Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 133 of 343
Found at i:44723903 original size:27 final size:27
Alignment explanation
Indices: 44723873--44724103 Score: 258
Period size: 27 Copynumber: 8.6 Consensus size: 27
44723863 TAATAAAGAG
44723873 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
44723900 AAATTACCGAAATA-CCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
44723926 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
44723953 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
44723980 AAATTA-TCAAA-ACACCATCGATTTGTA
1 AAATTACTGAAATAC-CC-TCGATTTGTA
** * **
44724007 AAATTACCAAAATACCTTTAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
44724034 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
44724061 AAATTA-TCAAA-ACACCCCTGATTTGTA
1 AAATTACTGAAATAC-CCTC-GATTTGTA
44724088 AAATTA-TCGAAATACC
1 AAATTACT-GAAATACC
44724104 ATTGTAGTGT
Statistics
Matches: 178, Mismatches: 17, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.02
26 37 0.21
27 125 0.70
28 8 0.04
29 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:44724001 original size:54 final size:54
Alignment explanation
Indices: 44723890--44724132 Score: 262
Period size: 54 Copynumber: 4.5 Consensus size: 54
44723880 TGAAATACCC
* * *
44723890 TCGATTTGTAAAATTACCGAAATA-CCTCGATTTGTAAAATTACCGAAACACCC
1 TCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAACACCA
*
44723943 TCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCAAAACACCA
1 TCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAACACCA
* * ** *
44723997 TCGATTTGTAAAATTACCAAAATACCTTTAATTTGTAAAATTACTGAAATAC-CC-
1 TCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA-TCAAA-ACACCA
* * * * *
44724051 TCGATTTGTAAAATTATCAAAACACCC-CTGATTTGTAAAATTATCGAAATACCA
1 TCGATTTGTAAAATTACCGAAATACCCTC-GATTTGTAAAATTATCAAAACACCA
* * *
44724105 TTG-TAGTGTAAAATTATCGAAATACCCT
1 TCGAT-TTGTAAAATTACCGAAATACCCT
44724133 TGTAGTGTAA
Statistics
Matches: 160, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
52 1 0.01
53 29 0.18
54 122 0.76
55 6 0.04
56 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (54 bp):
TCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAACACCA
Found at i:44724035 original size:81 final size:80
Alignment explanation
Indices: 44723873--44724103 Score: 336
Period size: 81 Copynumber: 2.9 Consensus size: 80
44723863 TAATAAAGAG
* * *
44723873 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCTCGATTTGTAAAATTACCGAAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCTCGATTTGTAAAATTACCGAAA
* *
44723938 CACCCTCGATTTGTA
66 TACCCTCAATTTGTA
* * *
44723953 AAATTACCGAAACACCCTCGATTTGTAAAATTATCAAAACACCATCGATTTGTAAAATTACCAAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACC-TCGATTTGTAAAATTACCGAA
* *
44724018 ATACCTTTAATTTGTA
65 ATACCCTCAATTTGTA
* *
44724034 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCCCTGATTTGTAAAATTATCGAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCTC-GATTTGTAAAATTACCGAA
44724099 ATACC
65 ATACC
44724104 ATTGTAGTGT
Statistics
Matches: 134, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
80 39 0.29
81 95 0.71
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (80 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCTCGATTTGTAAAATTACCGAAA
TACCCTCAATTTGTA
Found at i:44724114 original size:27 final size:27
Alignment explanation
Indices: 44724084--44724145 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
44724074 ACCCCTGATT
44724084 TGTAAAATTATCGAAATACCATTGTAG
1 TGTAAAATTATCGAAATACCATTGTAG
*
44724111 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCATTGTAG
44724138 TGTAAAAT
1 TGTAAAAT
44724146 GACTGACATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCATTGTAG
Found at i:44724115 original size:81 final size:81
Alignment explanation
Indices: 44723873--44724132 Score: 325
Period size: 81 Copynumber: 3.2 Consensus size: 81
44723863 TAATAAAGAG
* * * *
44723873 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCTC-GATTTGTAAAATTACCGAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCCCTGATTTGTAAAATTACCGAA
* *
44723937 ACACCCTCG-ATTTGTA
66 ATA-CCTTGTATTTGTA
* * * *
44723953 AAATTACCGAAACACCCTCGATTTGTAAAATTATCAAAACA-CCATCGATTTGTAAAATTACCAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCCCT-GATTTGTAAAATTACCGA
44724017 AATACCTT-TAATTTGTA
65 AATACCTTGT-ATTTGTA
*
44724034 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCCCTGATTTGTAAAATTATCGAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCCCTGATTTGTAAAATTACCGAA
*
44724099 ATACCATTGTA-GTGTA
66 ATACC-TTGTATTTGTA
44724115 AAATTA-TCGAAATACCCT
1 AAATTACT-GAAATACCCT
44724133 TGTAGTGTAA
Statistics
Matches: 156, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
79 1 0.01
80 40 0.26
81 108 0.69
82 6 0.04
83 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCCCTGATTTGTAAAATTACCGAA
ATACCTTGTATTTGTA
Found at i:44724156 original size:27 final size:28
Alignment explanation
Indices: 44724084--44724176 Score: 111
Period size: 27 Copynumber: 3.4 Consensus size: 28
44724074 ACCCCTGATT
* *
44724084 TGTAAAATTA-TCGAAATACCATTGTAG
1 TGTAAAATGACTCGAAATACCCTTGTAG
*
44724111 TGTAAAATTA-TCGAAATACCCTTGTAG
1 TGTAAAATGACTCGAAATACCCTTGTAG
* *
44724138 TGTAAAATGACT-GACATACCCCTGTAG
1 TGTAAAATGACTCGAAATACCCTTGTAG
*
44724165 GGTAAAATGACT
1 TGTAAAATGACT
44724177 ATTTTCCCCT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (28 bp):
TGTAAAATGACTCGAAATACCCTTGTAG
Found at i:44732270 original size:26 final size:26
Alignment explanation
Indices: 44732235--44732297 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
44732225 GTCATAGCCA
44732235 AATT-TAACATTTCATAACAGCATTT
1 AATTATAACATTTCATAACAGCATTT
*
44732260 AATTATAACATTTCATAATAGCATTT
1 AATTATAACATTTCATAACAGCATTT
44732286 AATTATAACATT
1 AATTATAACATT
44732298 AAACTATCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 4 0.11
26 32 0.89
ACGTcount: A:0.43, C:0.13, G:0.03, T:0.41
Consensus pattern (26 bp):
AATTATAACATTTCATAACAGCATTT
Found at i:44732271 original size:13 final size:13
Alignment explanation
Indices: 44732255--44732297 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
44732245 TTCATAACAG
44732255 CATTTAATTATAA
1 CATTTAATTATAA
* * *
44732268 CATTTCATAATAG
1 CATTTAATTATAA
44732281 CATTTAATTATAA
1 CATTTAATTATAA
44732294 CATT
1 CATT
44732298 AAACTATCAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (13 bp):
CATTTAATTATAA
Found at i:44735847 original size:43 final size:43
Alignment explanation
Indices: 44735723--44735879 Score: 174
Period size: 43 Copynumber: 3.7 Consensus size: 43
44735713 TGTGTTATCG
* * *
44735723 TGTAAGACCATGACTGGGACATTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGATTT-CA
* * *
44735767 TGTGAGACCACGTCTGAGACATTGGCATCG-TACTTGATTTCA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTCA
** * * **
44735809 TGTAAGACCTTGTCTAGGACAGTGGCATCGATATTTGATGACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTCA
44735852 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
44735880 TGTATGAGCT
Statistics
Matches: 92, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
42 27 0.29
43 39 0.42
44 26 0.28
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTCA
Found at i:44735873 original size:85 final size:86
Alignment explanation
Indices: 44735723--44735879 Score: 219
Period size: 85 Copynumber: 1.8 Consensus size: 86
44735713 TGTGTTATCG
* * * *
44735723 TGTAAGACCATGACTGGGACATTGGCATCGACTTATGATTTACATGTGAGACCACGTCTGAGACA
1 TGTAAGACCATGACTAGGACAGTGGCATCGACTTATGATTGACATGTAAGACCACGTCTGAGACA
44735788 TTGGCATCGTACTTGATTTCA
66 TTGGCATCGTACTTGATTTCA
* * * *
44735809 TGTAAGACCTTGTCTAGGACAGTGGCATCGA-TATTTGA-TGACATGTAAGACCACGTCTGGGAC
1 TGTAAGACCATGACTAGGACAGTGGCATCGACT-TATGATTGACATGTAAGACCACGTCTGAGAC
44735872 ATTGGCAT
65 ATTGGCAT
44735880 TGTATGAGCT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
85 31 0.50
86 31 0.50
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (86 bp):
TGTAAGACCATGACTAGGACAGTGGCATCGACTTATGATTGACATGTAAGACCACGTCTGAGACA
TTGGCATCGTACTTGATTTCA
Found at i:44740256 original size:22 final size:22
Alignment explanation
Indices: 44740214--44740257 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
44740204 AATTATTTAC
* *
44740214 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
44740236 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
44740258 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:44740558 original size:40 final size:40
Alignment explanation
Indices: 44740484--44740704 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
44740474 AACCCAAGTA
* *
44740484 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
44740523 CCTTCGAGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
44740563 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
44740603 CCTTCGGGACTTAGCCCGGATATTGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
44740643 -CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
44740682 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
44740705 CATTCGAATA
Statistics
Matches: 164, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 47 0.29
40 114 0.70
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:44740686 original size:79 final size:80
Alignment explanation
Indices: 44740484--44740704 Score: 340
Period size: 79 Copynumber: 2.8 Consensus size: 80
44740474 AACCCAAGTA
* * * *
44740484 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGAGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
44740547 GTCAATAGCACAAAAG
65 GTCAATAGCACAAAAG
*
44740563 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
44740628 TCAATAGCACAAATG
66 TCAATAGCACAAAAG
* *
44740643 -CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
44740705 CATTCGAATA
Statistics
Matches: 132, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
79 73 0.55
80 58 0.44
81 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:44740695 original size:119 final size:119
Alignment explanation
Indices: 44740484--44740704 Score: 347
Period size: 119 Copynumber: 1.9 Consensus size: 119
44740474 AACCCAAGTA
* * *
44740484 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGAGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGT
*
44740549 CAATAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
66 CAATAGCACAAAAGCCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATG
* *
44740603 CCTTCGGGACTTAGCCCGGATATTGTCAA-TAGCACAAATG-CTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAG-CCGGATATAG-CAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATA
*
44740666 GTCACTAGCACAAAAGCCTTCGGGACTTAGCCCAGATAT
64 GTCAATAGCACAAAAGCCTTCGGGACTTAGCCCAGATAT
44740705 CATTCGAATA
Statistics
Matches: 93, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
119 71 0.76
120 19 0.20
121 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGT
CAATAGCACAAAAGCCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATG
Found at i:44744451 original size:31 final size:31
Alignment explanation
Indices: 44744372--44744484 Score: 137
Period size: 31 Copynumber: 3.7 Consensus size: 31
44744362 TTAGTCTTGA
*
44744372 CATAT-ACTGGGCCGAAGCC-TTTCATTTAA-
1 CATATCACTGGGCCGAAGCCTTTTCA-TAAAT
*
44744401 CGAT-T-ACTGCGCCGAAGCCTTTTCATAAAT
1 C-ATATCACTGGGCCGAAGCCTTTTCATAAAT
*
44744431 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
44744462 CATTTCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
44744485 ACTATAAACG
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
29 20 0.27
30 9 0.12
31 44 0.60
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:44744567 original size:42 final size:42
Alignment explanation
Indices: 44744508--44744595 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
44744498 TGACCCATAG
* ** *
44744508 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
44744550 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
44744592 GCCC
1 GCCC
44744596 GTTTGGGGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:44744788 original size:26 final size:26
Alignment explanation
Indices: 44744744--44744893 Score: 239
Period size: 26 Copynumber: 5.8 Consensus size: 26
44744734 CCTCTTTAAT
*
44744744 AACTAGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
44744769 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
44744795 AAGTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
44744821 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
44744847 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
44744873 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
44744894 GCACTTCCTC
Statistics
Matches: 114, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 9 0.08
26 105 0.92
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:44744822 original size:52 final size:52
Alignment explanation
Indices: 44744744--44744893 Score: 266
Period size: 52 Copynumber: 2.9 Consensus size: 52
44744734 CCTCTTTAAT
* *
44744744 AACTAGGGCA-AAGCCCTTTTCAGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
44744795 AAGTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
44744847 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
44744894 GCACTTCCTC
Statistics
Matches: 94, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 8 0.09
52 86 0.91
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:44750463 original size:51 final size:49
Alignment explanation
Indices: 44750283--44750478 Score: 230
Period size: 50 Copynumber: 3.9 Consensus size: 49
44750273 TAGCCAAAGC
* * *
44750283 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * * *
44750332 TATCTGCTACACGTAGTAGTCTGCACTTAGTACTACACACATGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * *
44750382 CATCTGATACACGTAGTAGCCTGCAGTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* *
44750433 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
44750479 TCACAATAGA
Statistics
Matches: 122, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 39 0.32
50 44 0.36
51 39 0.32
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:44750478 original size:101 final size:99
Alignment explanation
Indices: 44750296--44750479 Score: 260
Period size: 101 Copynumber: 1.8 Consensus size: 99
44750286 CTGGTACGCA
* * * *
44750296 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGCTACACGTAGTAGTCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGCTACACATAGTAGCCTGCACTTA
44750361 GTACTACACACATGACCTAACCATCTGATACACG
66 GTACTACACACATGACCTAACCATCTGATACACG
* * * * *
44750395 TAGTAGCCTGCAGTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGCTACACATAGTAGCCTGCACT
*
44750460 TAGTACTACACACGTGACCT
64 TAGTACTACACACATGACCT
44750480 CACAATAGAT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 28 0.38
100 3 0.04
101 42 0.58
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGCTACACATAGTAGCCTGCACTTA
GTACTACACACATGACCTAACCATCTGATACACG
Found at i:44753342 original size:43 final size:43
Alignment explanation
Indices: 44753281--44753364 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
44753271 TTACCAAAAT
**
44753281 TAACCTTTTTTGCTAACTGCAATGTTGCGAAAATTAAACAAAG
1 TAACCTTTTTCACTAACTGCAATGTTGCGAAAATTAAACAAAG
*
44753324 TAACCTTTTTCACTAACTGCGATGTTGCGAAAATTAAACAA
1 TAACCTTTTTCACTAACTGCAATGTTGCGAAAATTAAACAA
44753365 TCTTTCGGTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (43 bp):
TAACCTTTTTCACTAACTGCAATGTTGCGAAAATTAAACAAAG
Found at i:44765008 original size:38 final size:38
Alignment explanation
Indices: 44764926--44765009 Score: 105
Period size: 38 Copynumber: 2.2 Consensus size: 38
44764916 ATATGCTGGA
*
44764926 ATTATATCCGGGTTAAATCCCACAGGCTTCGTGCTAGT
1 ATTATATCCGGGTTAAATCCCACAGGCCTCGTGCTAGT
* ** * * *
44764964 AATATATCCGGGTTAAATCCTGCAGGCCTGGTGTTGGT
1 ATTATATCCGGGTTAAATCCCACAGGCCTCGTGCTAGT
44765002 ATTATATC
1 ATTATATC
44765010 TGAGTTTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (38 bp):
ATTATATCCGGGTTAAATCCCACAGGCCTCGTGCTAGT
Found at i:44773169 original size:40 final size:40
Alignment explanation
Indices: 44773114--44773196 Score: 121
Period size: 40 Copynumber: 2.1 Consensus size: 40
44773104 TATTCAGATG
* * *
44773114 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCAGGACTAAGATCCGAAGGAAATTGTGCTAGTTACT
* *
44773154 ATATCAGGACTAAGATCCGAAGGAAATTGTGCTTGTTATT
1 ATATCAGGACTAAGATCCGAAGGAAATTGTGCTAGTTACT
44773194 ATA
1 ATA
44773197 ACCGGGTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (40 bp):
ATATCAGGACTAAGATCCGAAGGAAATTGTGCTAGTTACT
Found at i:44773214 original size:40 final size:40
Alignment explanation
Indices: 44773170--44773270 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
44773160 GGACTAAGAT
**
44773170 CCGAAGGAAATT-GTGCTTGTTATTATAACCGGGTTAAGTC
1 CCGAAGG-AATTCGTGCGGGTTATTATAACCGGGTTAAGTC
*
44773210 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTC
1 CCGAAGGAATTCGTGCGGGTTATTATAACCGGGTTAAGTC
* * *
44773250 CCGAAGGCATTCATGCTGGTT
1 CCGAAGGAATTCGTGCGGGTT
44773271 GTTACATCCG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
39 3 0.05
40 52 0.95
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (40 bp):
CCGAAGGAATTCGTGCGGGTTATTATAACCGGGTTAAGTC
Found at i:44781277 original size:40 final size:40
Alignment explanation
Indices: 44781226--44781374 Score: 169
Period size: 40 Copynumber: 3.7 Consensus size: 40
44781216 CGGATGATAT
* * *
44781226 CCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGACTAAG-TCCCGAAGGCATTCGTGCTAGTTATTATAA
44781266 CCGGACTAAGAT-CCGAAGGCAATT-GTGCTAGTTATTATAA
1 CCGGACTAAG-TCCCGAAGGC-ATTCGTGCTAGTTATTATAA
** **
44781306 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
**
44781346 CCGGGTTAAGTCCCGAAGGCATTCGTGCT
1 CCGGACTAAGTCCCGAAGGCATTCGTGCT
44781375 GGTTGTTACA
Statistics
Matches: 99, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
39 4 0.04
40 92 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
Found at i:44792362 original size:33 final size:34
Alignment explanation
Indices: 44792314--44792457 Score: 136
Period size: 33 Copynumber: 4.4 Consensus size: 34
44792304 TTTTTGGTGA
* * * *
44792314 TGCTATGTTTGTGCTGTTTG-GTGCTGTTTTTTG
1 TGCTATTTTTATGCTGTTTTGGTGCTATTTTTTG
* *
44792347 TGCAATTTTTATGCTGTTTTGGTGCTATTTTGT-
1 TGCTATTTTTATGCTGTTTTGGTGCTATTTTTTG
* ** *
44792380 TGCTGTTTTGGTGATGTTTTGGTGCTATTTTTTG
1 TGCTATTTTTATGCTGTTTTGGTGCTATTTTTTG
*
44792414 TGCTATTTTTATGCTG-TTTGGTG-T-TGTTTTGG
1 TGCTATTTTTATGCTGTTTTGGTGCTAT-TTTTTG
*
44792446 TGCTGTTTTTAT
1 TGCTATTTTTAT
44792458 ACTTAGGTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
31 1 0.01
32 17 0.19
33 50 0.56
34 22 0.24
ACGTcount: A:0.07, C:0.08, G:0.26, T:0.59
Consensus pattern (34 bp):
TGCTATTTTTATGCTGTTTTGGTGCTATTTTTTG
Found at i:44792367 original size:67 final size:69
Alignment explanation
Indices: 44792285--44792447 Score: 187
Period size: 67 Copynumber: 2.4 Consensus size: 69
44792275 TTTTGCAGGT
* * * *
44792285 TTTTTGTGCTATTTTGGTG-T-TTTTGGTGATGCTATGTTT-GTGCTG-TTTGGTGCTGTTTTTT
1 TTTTTATGCTGTTTTGGTGCTATTTTGGTG-TGCTAT-TTTGGTGATGTTTTGGTGCTATTTTTT
44792346 GTGCAA
64 GTGCAA
*
44792352 TTTTTATGCTGTTTTGGTGCTATTTT-GT-TGCTGTTTTGGTGATGTTTTGGTGCTATTTTTTGT
1 TTTTTATGCTGTTTTGGTGCTATTTTGGTGTGCTATTTTGGTGATGTTTTGGTGCTATTTTTTGT
*
44792415 GCTA
66 GCAA
* *
44792419 TTTTTATGCTG-TTTGGTGTTGTTTTGGTG
1 TTTTTATGCTGTTTTGGTGCTATTTTGGTG
44792448 CTGTTTTTAT
Statistics
Matches: 82, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
65 3 0.04
66 22 0.27
67 50 0.61
68 3 0.04
69 4 0.05
ACGTcount: A:0.07, C:0.07, G:0.28, T:0.59
Consensus pattern (69 bp):
TTTTTATGCTGTTTTGGTGCTATTTTGGTGTGCTATTTTGGTGATGTTTTGGTGCTATTTTTTGT
GCAA
Found at i:44792444 original size:11 final size:11
Alignment explanation
Indices: 44792285--44792454 Score: 105
Period size: 11 Copynumber: 15.4 Consensus size: 11
44792275 TTTTGCAGGT
* *
44792285 TTTTTGTGCTA
1 TTTTGGTGCTG
44792296 TTTTGGTG-T-
1 TTTTGGTGCTG
*
44792305 TTTTGGTGATG
1 TTTTGGTGCTG
*
44792316 CTATGTTTGTGCTG
1 -T-T-TTGGTGCTG
44792330 -TTTGGTGCTG
1 TTTTGGTGCTG
* **
44792340 TTTTTTGTGCAA
1 -TTTTGGTGCTG
**
44792352 TTTTTATGCTG
1 TTTTGGTGCTG
*
44792363 TTTTGGTGCTA
1 TTTTGGTGCTG
*
44792374 TTTTGTTGCTG
1 TTTTGGTGCTG
*
44792385 TTTTGGTGATG
1 TTTTGGTGCTG
*
44792396 TTTTGGTGCTAT
1 TTTTGGTGCT-G
* *
44792408 TTTTTGTGCTA
1 TTTTGGTGCTG
**
44792419 TTTTTATGCTG
1 TTTTGGTGCTG
*
44792430 -TTTGGTGTTG
1 TTTTGGTGCTG
44792440 TTTTGGTGCTG
1 TTTTGGTGCTG
44792451 TTTT
1 TTTT
44792455 TATACTTAGG
Statistics
Matches: 123, Mismatches: 27, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
9 8 0.07
10 17 0.14
11 73 0.59
12 17 0.14
13 1 0.01
14 7 0.06
ACGTcount: A:0.06, C:0.07, G:0.27, T:0.59
Consensus pattern (11 bp):
TTTTGGTGCTG
Found at i:44792448 original size:44 final size:45
Alignment explanation
Indices: 44792363--44792455 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 45
44792353 TTTTATGCTG
44792363 TTTTGGTGCTATTTTGTTGCTGTTTTGGTGATGTTTTGGTGCTAT
1 TTTTGGTGCTATTTTGTTGCTGTTTTGGTGATGTTTTGGTGCTAT
* * *
44792408 TTTTTGTGCTATTTT-TATGCTG-TTTGGTGTTGTTTTGGTGCTGT
1 TTTTGGTGCTATTTTGT-TGCTGTTTTGGTGATGTTTTGGTGCTAT
44792452 TTTT
1 TTTT
44792456 ATACTTAGGT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
44 25 0.57
45 19 0.43
ACGTcount: A:0.05, C:0.06, G:0.27, T:0.61
Consensus pattern (45 bp):
TTTTGGTGCTATTTTGTTGCTGTTTTGGTGATGTTTTGGTGCTAT
Found at i:44793122 original size:11 final size:11
Alignment explanation
Indices: 44793106--44793141 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
44793096 CTGAACTTGC
44793106 TTTGGTGCTGT
1 TTTGGTGCTGT
*
44793117 TTTGGTGTTGT
1 TTTGGTGCTGT
*
44793128 TTTGGTGGTGT
1 TTTGGTGCTGT
44793139 TTT
1 TTT
44793142 ATTGTTCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.00, C:0.03, G:0.36, T:0.61
Consensus pattern (11 bp):
TTTGGTGCTGT
Found at i:44793147 original size:22 final size:22
Alignment explanation
Indices: 44793106--44793153 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
44793096 CTGAACTTGC
* *
44793106 TTTGGTGCTGTTTTGGTGTTGT
1 TTTGGTGCTGTTTTAGTGTTCT
* *
44793128 TTTGGTGGTGTTTTATTGTTCT
1 TTTGGTGCTGTTTTAGTGTTCT
44793150 TTTG
1 TTTG
44793154 CAACTATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.02, C:0.04, G:0.31, T:0.62
Consensus pattern (22 bp):
TTTGGTGCTGTTTTAGTGTTCT
Found at i:44798430 original size:13 final size:13
Alignment explanation
Indices: 44798412--44798451 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
44798402 TTAATTTATA
44798412 TGTGTGAAAATTT
1 TGTGTGAAAATTT
44798425 TGTGTGAAAATTT
1 TGTGTGAAAATTT
44798438 TGTGTGAAAATTT
1 TGTGTGAAAATTT
44798451 T
1 T
44798452 ATTGTTTGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:44799602 original size:43 final size:43
Alignment explanation
Indices: 44799550--44799674 Score: 128
Period size: 44 Copynumber: 2.9 Consensus size: 43
44799540 AGGATTTTGA
44799550 TATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
1 TATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCG-T
* * * * *
44799594 T-TTTGATTTGCGTGTAAGACC-CTATCTGGGACAGTAGCATTGT
1 TATGTGATTT-CGTGTAAGACCAC-GTCTGGGACATTGGCATCGT
* * * *
44799637 TATGTAATTACATGTAAGACCACGTCTGGAACATTGGC
1 TATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGC
44799675 GTTGTACGAG
Statistics
Matches: 64, Mismatches: 13, Indels: 9
0.74 0.15 0.10
Matches are distributed among these distances:
43 31 0.48
44 33 0.52
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
TATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGT
Found at i:44802056 original size:42 final size:43
Alignment explanation
Indices: 44801954--44802057 Score: 138
Period size: 42 Copynumber: 2.4 Consensus size: 43
44801944 AATGTCGACA
* * * *
44801954 TCCCAAATGTGGTCTTACATGTAATCAAATATCGATGCCACTG
1 TCCCAGATATGGTCTTACATGAAATCAAATATCGATGCCAATG
* * *
44801997 TCCCAGACAAGGCCTTACATGAAATCAAATA-CGATGCCAATG
1 TCCCAGATATGGTCTTACATGAAATCAAATATCGATGCCAATG
44802039 TCCCAGATATGGTCTTACA
1 TCCCAGATATGGTCTTACA
44802058 AAATATCACA
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
TCCCAGATATGGTCTTACATGAAATCAAATATCGATGCCAATG
Found at i:44807690 original size:29 final size:29
Alignment explanation
Indices: 44807631--44807747 Score: 173
Period size: 29 Copynumber: 4.1 Consensus size: 29
44807621 ATACATGCAC
* * *
44807631 ATGGCCCACTAGG-CCTAATCTCATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
*
44807659 ATGGCCCATTAGGCCCAAATCACATTCGT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
*
44807688 ATGGCCCATTAGGCCCAAATTACATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
*
44807717 ACGGCCCATTAGGCCCAAATCACATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
44807746 AT
1 AT
44807748 ACATGCTTTC
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 12 0.15
29 67 0.85
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTCAT
Found at i:44809554 original size:29 final size:28
Alignment explanation
Indices: 44809493--44809582 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 28
44809483 ACATACATGC
* ** *
44809493 ATATGGCCCATCAGGCCCAATTCATATTC
1 ATATGGCCCATTAGGCCCAA-TCACCTTT
44809522 ATATGGCCCATTAGGCCCGAATCACCTTT
1 ATATGGCCCATTAGGCCC-AATCACCTTT
**
44809551 ATATGGCCTGTTAGGCCCAAATCACC-TT
1 ATATGGCCCATTAGGCCC-AATCACCTTT
44809579 ATAT
1 ATAT
44809583 TCATGCTCAC
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 6 0.11
29 45 0.85
30 2 0.04
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCACCTTT
Found at i:44809820 original size:16 final size:16
Alignment explanation
Indices: 44809799--44809836 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
44809789 AACTTTCAGA
*
44809799 TTTTCGTCATTTTGGC
1 TTTTCGACATTTTGGC
44809815 TTTTCGACATTTTGGC
1 TTTTCGACATTTTGGC
44809831 TTTTCG
1 TTTTCG
44809837 GCTTTTGCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.08, C:0.18, G:0.18, T:0.55
Consensus pattern (16 bp):
TTTTCGACATTTTGGC
Found at i:44812378 original size:33 final size:33
Alignment explanation
Indices: 44812329--44812393 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
44812319 ATATGCAAAA
*
44812329 CAGTCTAGGCCGTAGCCATATTCAGTAACAGAG
1 CAGTCTAGGCCGTAGCCATATACAGTAACAGAG
** * *
44812362 CAGTCTAGGCTTTAGCCCTATACAGTAGCAGA
1 CAGTCTAGGCCGTAGCCATATACAGTAACAGA
44812394 ATGGGCCCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (33 bp):
CAGTCTAGGCCGTAGCCATATACAGTAACAGAG
Found at i:44812731 original size:27 final size:27
Alignment explanation
Indices: 44812701--44812769 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 27
44812691 GGGCATAATC
44812701 GTCATTTTACCATAC-AGGGGTATTACG
1 GTCATTTTACC-TACAAGGGGTATTACG
44812728 GTCATTTTATCCTACAAGGGGTATTACG
1 GTCATTTTA-CCTACAAGGGGTATTACG
44812756 GTCATTTTACCTAC
1 GTCATTTTACCTAC
44812770 TTTGGGGTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
27 17 0.43
28 23 0.57
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCTACAAGGGGTATTACG
Found at i:44821407 original size:30 final size:30
Alignment explanation
Indices: 44821348--44821408 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
44821338 ATTCCCGAGC
* *
44821348 TTAGGGGCAAAAGTGTAATTATGCAAAAGT
1 TTAGGGGCAAAAGTATAATTATACAAAAGT
* *
44821378 TTAGGGGCAAAAGTATAATTTTACCAAAGT
1 TTAGGGGCAAAAGTATAATTATACAAAAGT
44821408 T
1 T
44821409 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TTAGGGGCAAAAGTATAATTATACAAAAGT
Found at i:44823830 original size:44 final size:44
Alignment explanation
Indices: 44822904--44823814 Score: 992
Period size: 44 Copynumber: 20.8 Consensus size: 44
44822894 CGTTACATTT
*
44822904 GATCTG-TCCTCTGTCAATACAGAGACACCAAATCTGTTATCTTC
1 GATCTGCT-CTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* * * *
44822948 GATATGCTCTTTGTCAATACAGAGACGACAAATCTGTTATCTTT
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
*
44822992 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGCTATC-TC
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* * * *
44823035 TGATCTGCTCTCTGCCAATACGGAGACACCAAATCT-TCTATCTTT
1 -GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT-TATCTTC
* * * * **
44823080 GATCTACTCTCTGTCAATACAGAAATGCTAAATCTACTATCTTC
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* * * * * *
44823124 GATCTGCTCTTTGACAATATAGAGACGCCAAATCTGCTATGTTT
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* * * **
44823168 GATCTGCTCTCTGACAATATAGAGACACCAAATCTACTATCTTC
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* * ** * *
44823212 GATCTGCTCTTTAG-CAATACAGATATTCCAAATCGGCTATCTTC
1 GATCTGCTCTCT-GTCAATACAGAGACGCCAAATCTGTTATCTTC
* *
44823256 GATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTCATCTTC
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* *
44823300 GATCTGCTCTCTGTCAATACAGAGACGCCAAATATGTCATCTTC
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* * *
44823344 GATCTGCTCTCTGTCAATACAGAGACACCAAATCTGTCATATTC
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
*
44823388 GATCTGCTCTCTGTCAATACAGAGACGCCAAATTTGTTATCTTC
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* * * *
44823432 GATCTGTTCTCTGT-AATACAGAGACACCAAATCTGTCATCTTT
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* * * * * * *
44823475 GATTTTCTCTCTGTCAATACAGAGATGCCATATTTTTTATATTC
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
** * * * * *
44823519 GATCTATTCTCTGTTAATACAGAGACGCCAATTTTTTTATTTTC
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* * *
44823563 GATCTACTCTCTGTCAATACAGAGACGCCAAATTTGTTATTTTC
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
** * *
44823607 GATCTGCTCTCTGTCAATACAGAGACGTGAAACCTATTATCTTC
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* * * * *
44823651 GATCTGCTCTCTGACAATACAGAGATGCCACATCTGCTA--TTA
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* * *
44823693 G-TCTGCTCTCTGTCAATACAGAGACACCAAATTTGTTATCTTT
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* ** * *
44823736 GATCTACTCTCTGTCAATACAGAGACATCAAACCTATTATCTTC
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
* * *
44823780 GATCTGTTCTCTGACAATACAGAGACTCCAAATCT
1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCT
44823815 ACTATCAGTG
Statistics
Matches: 731, Mismatches: 125, Indels: 22
0.83 0.14 0.03
Matches are distributed among these distances:
41 31 0.04
42 3 0.00
43 41 0.06
44 653 0.89
45 3 0.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (44 bp):
GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC
Found at i:44835818 original size:14 final size:14
Alignment explanation
Indices: 44835799--44835850 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
44835789 AGTAATATAA
44835799 AATATAATAAAAAT
1 AATATAATAAAAAT
*
44835813 AATATAATGAATAAT
1 AATATAAT-AAAAAT
*
44835828 ATATATAGT-AAAAT
1 A-ATATAATAAAAAT
*
44835842 GATATAATA
1 AATATAATA
44835851 TATTATAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
13 6 0.20
14 12 0.40
15 6 0.20
16 6 0.20
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.33
Consensus pattern (14 bp):
AATATAATAAAAAT
Found at i:44835853 original size:20 final size:19
Alignment explanation
Indices: 44835823--44835867 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 19
44835813 AATATAATGA
44835823 ATAATATATATAGTAAAATGAT
1 ATAATATAT-TA-TAAAAT-AT
44835845 ATAATATATTATAAAATAT
1 ATAATATATTATAAAATAT
44835864 ATAA
1 ATAA
44835868 ATAAAACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.26
20 6 0.26
21 2 0.09
22 9 0.39
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (19 bp):
ATAATATATTATAAAATAT
Found at i:44835870 original size:20 final size:22
Alignment explanation
Indices: 44835800--44835867 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 22
44835790 GTAATATAAA
* * * *
44835800 ATATAATAAAAATAATATAATG
1 ATATAATATATATAGTAAAATG
44835822 A-ATAATATATATAGTAAAATG
1 ATATAATATATATAGTAAAATG
44835843 ATATAATATAT-TA-TAAAAT-
1 ATATAATATATATAGTAAAATG
44835862 ATATAA
1 ATATAA
44835868 ATAAAACTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 6 0.15
20 6 0.15
21 19 0.46
22 10 0.24
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (22 bp):
ATATAATATATATAGTAAAATG
Found at i:44835938 original size:18 final size:17
Alignment explanation
Indices: 44835917--44835967 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
44835907 CTAAAAATAA
44835917 TATATATAATAAATCATT
1 TATATATAATAAAT-ATT
44835935 TATATATACAT-AATATT
1 TATATATA-ATAAATATT
*
44835952 TATAGTAAAATAAATA
1 TATA-TATAATAAATA
44835968 ATATATAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
17 9 0.31
18 18 0.62
19 2 0.07
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (17 bp):
TATATATAATAAATATT
Found at i:44835989 original size:25 final size:27
Alignment explanation
Indices: 44835952--44836003 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 27
44835942 ACATAATATT
44835952 TATAGTAAAATAAATAATATAT-AAAA
1 TATAGTAAAATAAATAATATATGAAAA
*
44835978 TATA-TAAAATAAATAATTTATGAAAA
1 TATAGTAAAATAAATAATATATGAAAA
44836004 AAAATAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (27 bp):
TATAGTAAAATAAATAATATATGAAAA
Found at i:44838696 original size:27 final size:27
Alignment explanation
Indices: 44838666--44838897 Score: 304
Period size: 27 Copynumber: 8.6 Consensus size: 27
44838656 TTAGTTTACC
44838666 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
44838693 AAATCACTAAAATA-CCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
44838719 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
44838746 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
44838773 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
44838800 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
44838827 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
44838854 AAATTACCAAAATAACCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
44838881 AAATTACTTAAATACCC
1 AAATTACCAAAATACCC
44838898 TCGACCTGTA
Statistics
Matches: 181, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 23 0.13
27 158 0.87
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:44838825 original size:81 final size:82
Alignment explanation
Indices: 44838666--44838951 Score: 298
Period size: 81 Copynumber: 3.5 Consensus size: 82
44838656 TTAGTTTACC
* * * * * * *
44838666 AAATTACCAAAATACCC-CTGGTTTGTAAAATCACTAAAATA-CCTTGGTTTATAAAATCACCAA
1 AAATTACCAAAATACCCTTTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
44838729 AATACCCCT-AGTTTGTA
66 AATACCCCTGA-TTTGTA
* *
44838746 AAATTACTAAAATACCCTTTG-TTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
1 AAATTACCAAAATACCCTTTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
44838810 AATACCCCTGATTTGTA
66 AATACCCCTGATTTGTA
* * * * **
44838827 AAATTACCAAAATACCC-CTGATTTGTAAAATTACCAAAATAACCCTGATTTGTGAAATTACTTA
1 AAATTACCAAAATACCCTTTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
**
44838891 AATA-CCCTCGACCTGTA
66 AATACCCCT-GATTTGTA
*** * * *
44838908 AAATTATTGAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCC
1 AAATTACCAAAATACCCTTTGATTTGTAAAATTACCAAAATACCC
44838952 TTGATTTACA
Statistics
Matches: 174, Mismatches: 26, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
80 41 0.24
81 132 0.76
82 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (82 bp):
AAATTACCAAAATACCCTTTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
AATACCCCTGATTTGTA
Found at i:44838873 original size:54 final size:53
Alignment explanation
Indices: 44838666--44838958 Score: 313
Period size: 54 Copynumber: 5.5 Consensus size: 53
44838656 TTAGTTTACC
* * * * *
44838666 AAATTACCAAAATACCCCTGGTTTGTAAAATCACTAAAATACCTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTGATTTGTA
* *
44838719 AAATCACCAAAATACCCCT-AGTTTGTAAAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACTAAAATACCC--TGATTTGTA
* *
44838773 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATA-CCCTGATTTGTA
* *
44838827 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATAACCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAAT-ACCCTGATTTGTA
** ** * * * *
44838881 AAATTACTTAAATA-CCCTCGACCTGTAAAATTATTGAAATACCTTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACTAAAATACCCT-GATTTGTA
* *
44838935 AAATTACCAAAGTACCCTTGATTT
1 AAATTACCAAAATACCCCTGATTT
44838959 ACAGAATTAT
Statistics
Matches: 204, Mismatches: 26, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
53 49 0.24
54 146 0.72
55 9 0.04
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (53 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTGATTTGTA
Found at i:44838911 original size:27 final size:27
Alignment explanation
Indices: 44838666--44838958 Score: 251
Period size: 27 Copynumber: 10.9 Consensus size: 27
44838656 TTAGTTTACC
*
44838666 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * * *
44838693 AAATCACTAAAATA-CCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
44838719 AAATCACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * *
44838746 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
*
44838773 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
44838800 AAATTACCAAAATACCC-CTGATTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
44838827 AAATTACCAAAATACCC-CTGATTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
*
44838854 AAATTACCAAAATAACCCT-GATTTGTG
1 AAATTACCAAAAT-ACCCTCGATTTGTA
** **
44838881 AAATTACTTAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** * *
44838908 AAATTATTGAAATACCTTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
44838935 AAATTACCAAAGTACCCTTGATTT
1 AAATTACCAAAATACCCTCGATTT
44838959 ACAGAATTAT
Statistics
Matches: 221, Mismatches: 35, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
26 28 0.13
27 189 0.86
28 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:44839004 original size:27 final size:27
Alignment explanation
Indices: 44838907--44839006 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
44838897 CTCGACCTGT
* * * **
44838907 AAAATTATTGAAATACCTTCGACTTGT
1 AAAATTATCGAAATACCCTCGATTTAC
* *
44838934 AAAATTA-CCAAAGTACCCTTGATTTAC
1 AAAATTATCGAAA-TACCCTCGATTTAC
* ***
44838961 AGAATTATCGTTTTACCCTCGATTTAC
1 AAAATTATCGAAATACCCTCGATTTAC
44838988 AAAATTATCGAAATACCCT
1 AAAATTATCGAAATACCCT
44839007 TGTAGGGTGG
Statistics
Matches: 54, Mismatches: 17, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
26 3 0.06
27 50 0.93
28 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTCGATTTAC
Found at i:44839028 original size:27 final size:27
Alignment explanation
Indices: 44838990--44839238 Score: 311
Period size: 27 Copynumber: 9.3 Consensus size: 27
44838980 CGATTTACAA
* * *
44838990 AATTATCGAAATACCCTTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
44839017 AAATACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
44839044 AATTAACGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
44839071 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
44839098 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
44839125 AATTACCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
44839152 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
44839179 AATTACTAAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
44839206 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
44839232 AATTACC
1 AATTACC
44839239 ATTTTGCCCC
Statistics
Matches: 193, Mismatches: 29, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
26 16 0.08
27 177 0.92
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:44839671 original size:19 final size:19
Alignment explanation
Indices: 44839643--44839707 Score: 63
Period size: 19 Copynumber: 3.8 Consensus size: 19
44839633 TATTCACATT
*
44839643 CTGATTTTGATTCTGTTAC
1 CTGATATTGATTCTGTTAC
44839662 CTGATATTGATTCTG--A-
1 CTGATATTGATTCTGTTAC
44839678 -T--T-TTGATTCTGTTAC
1 CTGATATTGATTCTGTTAC
*
44839693 CTGATACTGATTCTG
1 CTGATATTGATTCTG
44839708 ATTCTGATTC
Statistics
Matches: 37, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
12 9 0.24
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 22 0.59
ACGTcount: A:0.18, C:0.15, G:0.17, T:0.49
Consensus pattern (19 bp):
CTGATATTGATTCTGTTAC
Found at i:44839678 original size:6 final size:6
Alignment explanation
Indices: 44839640--44839727 Score: 67
Period size: 6 Copynumber: 14.3 Consensus size: 6
44839630 TTGTATTCAC
* *
44839640 ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
*
44839689 -TTACCTG ATACTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
44839728 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 6, Indels: 20
0.72 0.07 0.22
Matches are distributed among these distances:
5 6 0.09
6 50 0.76
7 7 0.11
8 2 0.03
9 1 0.02
ACGTcount: A:0.19, C:0.15, G:0.16, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:44839678 original size:31 final size:31
Alignment explanation
Indices: 44839640--44839718 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
44839630 TTGTATTCAC
*
44839640 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
44839671 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
44839702 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
44839719 AGTTCTGATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:44842916 original size:29 final size:27
Alignment explanation
Indices: 44842870--44842932 Score: 67
Period size: 29 Copynumber: 2.3 Consensus size: 27
44842860 ACGAAATAAA
*
44842870 TCGA-CTAGTCCGATACTTTATTCTTTCC
1 TCGATCTAGTCCGATACTTCATT-TTT-C
44842898 TCGATCTAGATCCGA-ACTTCATTTTTC
1 TCGATCTAG-TCCGATACTTCATTTTTC
*
44842925 TTGATCTA
1 TCGATCTA
44842933 TATAATATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 8 0.26
28 7 0.23
29 11 0.35
30 5 0.16
ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43
Consensus pattern (27 bp):
TCGATCTAGTCCGATACTTCATTTTTC
Found at i:44849558 original size:27 final size:27
Alignment explanation
Indices: 44849528--44849631 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
44849518 CTTGATTGAT
*
44849528 AAATGACTGTTGTGCCCCTATGTGGTA
1 AAATGACTGTTTTGCCCCTATGTGGTA
* *
44849555 AAATGACTGTTTT-TCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCCT-ATGTGGTA
* *
44849582 AAATGACTGTTTTGCCCTTATATGGTA
1 AAATGACTGTTTTGCCCCTATGTGGTA
* *
44849609 ATATAACTGTTTTG-CCCTATGTG
1 AAATGACTGTTTTGCCCCTATGTG
44849632 ATGTAAATAT
Statistics
Matches: 64, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
26 11 0.17
27 50 0.78
28 3 0.05
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.38
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCCTATGTGGTA
Found at i:44853743 original size:44 final size:44
Alignment explanation
Indices: 44853678--44853805 Score: 156
Period size: 44 Copynumber: 3.0 Consensus size: 44
44853668 TAGGATTCTG
* *
44853678 ATATGGGATTTCATGTAAGACCACGTCTGGGACGTTGGCATCA-
1 ATATGGGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATCAT
* * *
44853721 ATTTGGGATTTACGTGTAAGACCATGTTTGGGACATTGGCATCAT
1 ATATGGGATTT-CGTGTAAGACCATGTCTGGGACGTTGGCATCAT
*
44853766 ATAT--GATTTCGTGTAAGACCTTGTCTGGGACAG-TGGCATC
1 ATATGGGATTTCGTGTAAGACCATGTCTGGGAC-GTTGGCATC
44853806 TTTATTTGAT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
42 27 0.37
43 15 0.21
44 28 0.38
45 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (44 bp):
ATATGGGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATCAT
Found at i:44853795 original size:42 final size:42
Alignment explanation
Indices: 44853684--44853828 Score: 157
Period size: 42 Copynumber: 3.4 Consensus size: 42
44853674 TCTGATATGG
* *
44853684 GATTTCATGTAAGACCACGTCTGGGACGTTGGCATCA-ATTT
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCATATTT
* * *
44853725 GGGATTTACGTGTAAGACCATGTTTGGGACATTGGCATCATATAT
1 --GATTT-CATGTAAGACCATGTCTGGGACATTGGCATCATATTT
* * * *
44853770 GATTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCTTTATTT
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATC-ATATTT
*
44853813 GATTACATGTAAGACC
1 GATTTCATGTAAGACC
44853829 TAATCTTGGA
Statistics
Matches: 87, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
42 28 0.32
43 28 0.32
44 28 0.32
45 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
GATTTCATGTAAGACCATGTCTGGGACATTGGCATCATATTT
Found at i:44861341 original size:42 final size:43
Alignment explanation
Indices: 44861231--44861393 Score: 150
Period size: 43 Copynumber: 3.8 Consensus size: 43
44861221 CTGATATGTT
* ** * * * * **
44861231 ATTTCATGTAAGACCAAGTATGGGACGTTGGCATTGATTTGGG
1 ATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATG
* *
44861274 ATTTACGTGTAAGACCATGTTTGGGACATTGGCATCG-TATATG
1 ATTT-CGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATG
* *
44861317 ATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTG
1 ATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATG
* * *
44861360 ATTACATGTAAGA-CCTCGTCTGGGACGTTGGCAT
1 ATTTCGTGTAAGACCCT-GTCTGGGACATTGGCAT
44861394 TGTACAAGCT
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 32 0.32
43 42 0.42
44 27 0.27
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (43 bp):
ATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATG
Found at i:44863393 original size:68 final size:65
Alignment explanation
Indices: 44863276--44863528 Score: 221
Period size: 68 Copynumber: 3.8 Consensus size: 65
44863266 ATACAGATGG
* ** * * * * *
44863276 TATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACGAGACA
1 TATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGCTACG-GAGA
44863340 TTA
64 -TA
* *
44863343 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGG-GAT
1 T-ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGGAGAT
44863407 A
65 A
* * * * *
44863408 TATGTAGCTAGGTTGTATGCGTGGTTCCAAGTGAATGACACCATGTAGACAAGAGAGCTA-GGAG
1 TATGTAGCTAGGTCGCATGGGTGGTACTAAGTG--T-ACACCATGTAGACAAGAGAGCTACGGAG
44863472 ATA
63 ATA
* * *
44863475 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
44863529 CAAAATTATG
Statistics
Matches: 153, Mismatches: 25, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 26 0.17
65 3 0.02
66 25 0.16
67 30 0.20
68 49 0.32
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (65 bp):
TATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGGAGATA
Found at i:44874645 original size:27 final size:26
Alignment explanation
Indices: 44874591--44874696 Score: 122
Period size: 27 Copynumber: 4.0 Consensus size: 26
44874581 CATGGCTGCC
* *
44874591 AGAACAGATAATGTGACAGAGTCACT
1 AGAACAGATAATGTGGCAGAGCCACT
44874617 AGAACAGATAATCGTGGCAGAGCCACT
1 AGAACAGATAAT-GTGGCAGAGCCACT
* * *
44874644 AGAATAGATATATGTGGCAAAGCCACC
1 AGAACAGATA-ATGTGGCAGAGCCACT
* *
44874671 AGATCAGATAATTGTGGCATAGCCAC
1 AGAACAGATAA-TGTGGCAGAGCCAC
44874697 CAGGATGCTT
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 13 0.19
27 54 0.78
28 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.19
Consensus pattern (26 bp):
AGAACAGATAATGTGGCAGAGCCACT
Found at i:44876128 original size:24 final size:24
Alignment explanation
Indices: 44876092--44876193 Score: 168
Period size: 24 Copynumber: 4.2 Consensus size: 24
44876082 GCCAACACTG
*
44876092 CTCTCCCTAATCAGCTCCTAAATC
1 CTCTCCCTTATCAGCTCCTAAATC
* *
44876116 CTCTCCCGTATCAGTTCCTAAATC
1 CTCTCCCTTATCAGCTCCTAAATC
*
44876140 CTCTCCCTTATCAGTTCCTAAATC
1 CTCTCCCTTATCAGCTCCTAAATC
44876164 CTCTCCCTTATCAGCTCCTAAATC
1 CTCTCCCTTATCAGCTCCTAAATC
44876188 CTCTCC
1 CTCTCC
44876194 TGACAGACTT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.21, C:0.41, G:0.05, T:0.33
Consensus pattern (24 bp):
CTCTCCCTTATCAGCTCCTAAATC
Found at i:44882572 original size:13 final size:13
Alignment explanation
Indices: 44882556--44882580 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44882546 TAAAAACCAT
44882556 GTGGGAAAATTTA
1 GTGGGAAAATTTA
44882569 GTGGGAAAATTT
1 GTGGGAAAATTT
44882581 CTACACAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (13 bp):
GTGGGAAAATTTA
Found at i:44889242 original size:20 final size:20
Alignment explanation
Indices: 44889219--44889260 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
44889209 ATACTGAGTT
44889219 TGATAATACTGAACTGATTG
1 TGATAATACTGAACTGATTG
*
44889239 TGATAATACTGAATTGATTG
1 TGATAATACTGAACTGATTG
44889259 TG
1 TG
44889261 TGAATGATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.38
Consensus pattern (20 bp):
TGATAATACTGAACTGATTG
Found at i:44892253 original size:46 final size:46
Alignment explanation
Indices: 44892203--44892331 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
44892193 TGGTTGAGCA
*
44892203 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
44892249 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
44892295 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44892332 GTACATGATG
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:44898752 original size:47 final size:51
Alignment explanation
Indices: 44898698--44898799 Score: 167
Period size: 50 Copynumber: 2.1 Consensus size: 51
44898688 AAGTGATTCC
*
44898698 AAGCCCCGTTTTTAATG-T-TTTACGTTTTT-GAATCCCGGTAGCTCGA-T
1 AAGCCCCGATTTTAATGTTCTTTACGTTTTTAGAATCCCGGTAGCTCGATT
44898745 AAGCCCCGATTTTAATGTTCTTTACGTTTTTAGAATCCCGGTAGCTCGATT
1 AAGCCCCGATTTTAATGTTCTTTACGTTTTTAGAATCCCGGTAGCTCGATT
44898796 AAGC
1 AAGC
44898800 TTGTGTTAGC
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
47 16 0.32
48 1 0.02
49 11 0.22
50 17 0.34
51 5 0.10
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (51 bp):
AAGCCCCGATTTTAATGTTCTTTACGTTTTTAGAATCCCGGTAGCTCGATT
Found at i:44899715 original size:93 final size:93
Alignment explanation
Indices: 44899556--44899727 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
44899546 GGATGGTTGA
* *
44899556 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAACGCCCGAACTCGTTGAGT
44899621 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
44899649 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAACGCCCGAACTCGTTGAGT
44899714 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
44899728 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:44899732 original size:46 final size:46
Alignment explanation
Indices: 44899560--44899734 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
44899550 GGTTGAGCAT
* * *
44899560 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
44899606 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
44899651 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
44899699 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44899735 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.56
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:44902129 original size:32 final size:32
Alignment explanation
Indices: 44902093--44902157 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
44902083 TCCGCTAGAG
44902093 GTCCAAGGGATAGTGTTTCCGGTTGATCTAAT
1 GTCCAAGGGATAGTGTTTCCGGTTGATCTAAT
*
44902125 GTCCAAGGGATAGTGTTTCTGGTTGATCTAAT
1 GTCCAAGGGATAGTGTTTCCGGTTGATCTAAT
44902157 G
1 G
44902158 CAGCTTCCGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.14, G:0.29, T:0.35
Consensus pattern (32 bp):
GTCCAAGGGATAGTGTTTCCGGTTGATCTAAT
Found at i:44911005 original size:18 final size:19
Alignment explanation
Indices: 44910975--44911030 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
44910965 GCAACTCCCC
44910975 AAAACATGGTTTTCCTAAAG
1 AAAA-ATGGTTTTCCTAAAG
** * *
44910995 ACTAA-GGTTTTCGTAAAT
1 AAAAATGGTTTTCCTAAAG
44911013 AAAAATGGTTTTCCTAAA
1 AAAAATGGTTTTCCTAAA
44911031 ATAGAATGTT
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
18 14 0.50
19 12 0.43
20 2 0.07
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (19 bp):
AAAAATGGTTTTCCTAAAG
Found at i:44913424 original size:37 final size:37
Alignment explanation
Indices: 44913361--44913543 Score: 278
Period size: 37 Copynumber: 4.9 Consensus size: 37
44913351 AGCTCAGACG
* * * *
44913361 AAATCTCCACACGAAGTTATCAGGTCTTATCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
44913398 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGG-CA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC-GGACA
* *
44913435 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
44913472 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
44913509 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
44913544 ACATATTTCC
Statistics
Matches: 134, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
36 2 0.01
37 130 0.97
38 2 0.01
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:44913445 original size:74 final size:74
Alignment explanation
Indices: 44913364--44913543 Score: 308
Period size: 74 Copynumber: 2.4 Consensus size: 74
44913354 TCAGACGAAA
* * * *
44913364 TCTCCACACGAAGTTATCAGGTCTTATCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
44913429 CAGG-CATAC
66 C-GGACATAC
44913438 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
44913503 CGGACATAC
66 CGGACATAC
44913512 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
44913544 ACATATTTCC
Statistics
Matches: 101, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
73 2 0.02
74 99 0.98
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (74 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
CGGACATAC
Found at i:44913827 original size:47 final size:47
Alignment explanation
Indices: 44913748--44913988 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
44913738 TATATATATT
* * * * *
44913748 TCACATTGACCATTCGACTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
44913795 CCACATTGGCCATTTGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
44913842 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
44913889 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
44913936 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
44913983 TCACAT
1 TCACAT
44913989 AAAATCCTAA
Statistics
Matches: 175, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 175 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:44913855 original size:94 final size:94
Alignment explanation
Indices: 44913748--44913988 Score: 419
Period size: 94 Copynumber: 2.6 Consensus size: 94
44913738 TATATATATT
* * * * * *
44913748 TCACATTGACCATTCGACTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTTGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC
44913813 CTTATCACACATATGCATGCTCACATTCA
66 CTTATCACACATATGCATGCTCACATTCA
44913842 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC
44913907 CTTATCACACATATGCATGCTCACATTCA
66 CTTATCACACATATGCATGCTCACATTCA
*
44913936 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACAT
44913989 AAAATCCTAA
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 140 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (94 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC
CTTATCACACATATGCATGCTCACATTCA
Found at i:44920475 original size:14 final size:14
Alignment explanation
Indices: 44920432--44920499 Score: 75
Period size: 14 Copynumber: 4.7 Consensus size: 14
44920422 CAAGGAAACC
44920432 GAATAAAGAAATCCA
1 GAATAAAG-AATCCA
* *
44920447 -AGATAGAGAAACCA
1 GA-ATAAAGAATCCA
44920461 GAATAAAGAATCCA
1 GAATAAAGAATCCA
44920475 GAATAAAGAGATCCA
1 GAATAAAGA-ATCCA
*
44920490 GGATAAAGAA
1 GAATAAAGAA
44920500 ACCCAAGATA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
14 26 0.58
15 19 0.42
ACGTcount: A:0.57, C:0.12, G:0.19, T:0.12
Consensus pattern (14 bp):
GAATAAAGAATCCA
Found at i:44920509 original size:15 final size:15
Alignment explanation
Indices: 44920434--44920509 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
44920424 AGGAAACCGA
44920434 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
44920449 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
44920462 AATAAAG-AATCC-AG
1 -ATAAAGAAATCCAAG
* *
44920476 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
44920492 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
44920507 ATA
1 ATA
44920510 TGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
13 4 0.08
14 18 0.36
15 27 0.54
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:44923533 original size:92 final size:93
Alignment explanation
Indices: 44923420--44923590 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
44923410 GCCCATAAGT
* *
44923420 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
44923485 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
44923513 GAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
44923577 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
44923591 CAAATATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 69 0.92
93 6 0.08
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:44923586 original size:46 final size:46
Alignment explanation
Indices: 44923412--44923586 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
44923402 TGTAACCCGC
* * *
44923412 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
44923458 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
44923508 -C-TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
44923550 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
44923587 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 2 0.02
44 2 0.02
45 6 0.05
46 79 0.72
47 6 0.05
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:44935585 original size:24 final size:24
Alignment explanation
Indices: 44935558--44935646 Score: 106
Period size: 24 Copynumber: 3.7 Consensus size: 24
44935548 TCCACGTTTC
*
44935558 CTCGCACACATAGTGCTATATAAT
1 CTCGCACACATAGTGCCATATAAT
* *
44935582 CTCGCACACATAGTGCCATGTAGTT
1 CTCGCACACATAGTGCCATATA-AT
* * * *
44935607 TTTGCACACATAGTGCCACATAAC
1 CTCGCACACATAGTGCCATATAAT
44935631 CTCGCACACATAGTGC
1 CTCGCACACATAGTGC
44935647 TGAAATTTCT
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
24 34 0.64
25 19 0.36
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (24 bp):
CTCGCACACATAGTGCCATATAAT
Found at i:44938454 original size:27 final size:27
Alignment explanation
Indices: 44938359--44938445 Score: 133
Period size: 27 Copynumber: 3.2 Consensus size: 27
44938349 GGAAGTACTA
44938359 TACTGGTGG-CTCTGCCACAATTACTGT
1 TACTGGTGGCCT-TGCCACAATTACTGT
*
44938386 TACTGGTGGCCTTGCCACAATTACTGA
1 TACTGGTGGCCTTGCCACAATTACTGT
44938413 TACTGGTGGCCTTGCCAC-ATATACTGT
1 TACTGGTGGCCTTGCCACAAT-TACTGT
44938440 TACTGG
1 TACTGG
44938446 CAGCTTTGCT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
26 2 0.04
27 52 0.93
28 2 0.04
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
TACTGGTGGCCTTGCCACAATTACTGT
Found at i:44943918 original size:40 final size:40
Alignment explanation
Indices: 44943797--44943943 Score: 149
Period size: 39 Copynumber: 3.8 Consensus size: 40
44943787 TGATGTGTGT
* * * * * *
44943797 ATCCGGGCTTAAAGACCCGCAGGCCAT-ATGTTGGAATTGT
1 ATCCGGGTTTAAAGACCCGCAGG-CTTCGTGCTGGAATGGA
* * *
44943837 ATCCGGGTTTAAAGA-CTGCAAGCTTTGTGCTGGAATGGA
1 ATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGA
44943876 ATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGA
1 ATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGA
* * *
44943916 AT-CGGGGTTAAAGAACCGTAGGC-TCGTG
1 ATCCGGGTTTAAAGACCCGCAGGCTTCGTG
44943944 TTAGAAATGT
Statistics
Matches: 91, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
38 7 0.08
39 47 0.52
40 37 0.41
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (40 bp):
ATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGA
Found at i:44952274 original size:18 final size:18
Alignment explanation
Indices: 44952251--44952296 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
44952241 CACCCGATTA
**
44952251 AGCTTGTTGGATGATGGT
1 AGCTTGTTAAATGATGGT
44952269 AGCTTGTTAAATGATGGT
1 AGCTTGTTAAATGATGGT
44952287 AGCTTGTTAA
1 AGCTTGTTAA
44952297 CTGAGCTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.24, C:0.07, G:0.30, T:0.39
Consensus pattern (18 bp):
AGCTTGTTAAATGATGGT
Found at i:44953833 original size:39 final size:40
Alignment explanation
Indices: 44953756--44953902 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
44953746 TAGCTCCTCG
* * *
44953756 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
44953796 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
44953835 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
44953875 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
44953903 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:44953913 original size:80 final size:80
Alignment explanation
Indices: 44953802--44953982 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
44953792 CTCATTCAAT
* * *
44953802 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
44953865 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
44953881 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
44953945 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
44953962 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
44953983 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:44953942 original size:40 final size:40
Alignment explanation
Indices: 44953799--44953982 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
44953789 TAACTCATTC
* *
44953799 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
44953839 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
44953879 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
44953919 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
44953960 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
44953983 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:44961660 original size:39 final size:41
Alignment explanation
Indices: 44961591--44961727 Score: 115
Period size: 39 Copynumber: 3.5 Consensus size: 41
44961581 CGTTCAAGTT
* * * **
44961591 CCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATG
1 CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAATG
* *
44961630 CCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAATG
* * * * * *
44961670 CCTTC-GGACTTAACCCGGAAT-TAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAATG
44961709 CCTTC-GGACTTAACCCGGA
1 CCTTCGGGACTTAACCCGGA
44961728 ATAATAACTC
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
38 2 0.02
39 68 0.82
40 13 0.16
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (41 bp):
CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAATG
Found at i:44961695 original size:78 final size:79
Alignment explanation
Indices: 44961605--44961807 Score: 209
Period size: 78 Copynumber: 2.6 Consensus size: 79
44961595 CGGGACATAG
* ** * * *
44961605 CCCGGTTA-TAGTAACTCATTCAATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAA
1 CCCGGATATTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA--ATAATAACTCGCACAAA
*
44961668 TGCCTTCGGA-CTTAA
64 TACCTTCGGATCTTAA
* *
44961683 CCCGGA-ATTAGTATCTCGCACAAAGGCCTTC-GGACTTAACCCGGAATAATAACTCGCACAAAT
1 CCCGGATATTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGGAATAATAACTCGCACAAAT
*
44961746 ACCTTCGGATCTTAG
65 ACCTTCGGATCTTAA
* * * *
44961761 TCCGGATATTAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCCGGATATTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCGGA
44961808 CAGCATTCAA
Statistics
Matches: 102, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
76 3 0.03
77 21 0.21
78 39 0.38
79 20 0.20
80 19 0.19
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (79 bp):
CCCGGATATTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATAATAACTCGCACAAATA
CCTTCGGATCTTAA
Found at i:44961714 original size:79 final size:80
Alignment explanation
Indices: 44961629--44961807 Score: 217
Period size: 78 Copynumber: 2.3 Consensus size: 80
44961619 CTCATTCAAT
* * *
44961629 GCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATGCCTTCGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGA--ATAATAACTCGCACAAATACCTTCGGATCTTAACCCGGATAT
*
44961691 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
44961707 GGCCTTC-GGACTTAACCCGGAATAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATATT
1 -GCCTTCGGGACTTAACCCGGAATAATAACTCGCACAAATACCTTCGGATCTTAACCCGGATATT
44961771 AGTCACTTAGCACAAA
65 AGTCACTTAGCACAAA
*
44961787 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
44961808 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
76 3 0.03
77 20 0.23
78 23 0.26
79 18 0.21
80 22 0.25
81 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGAATAATAACTCGCACAAATACCTTCGGATCTTAACCCGGATATTA
GTCACTTAGCACAAA
Found at i:44961728 original size:39 final size:40
Alignment explanation
Indices: 44961626--44961807 Score: 185
Period size: 39 Copynumber: 4.6 Consensus size: 40
44961616 TAACTCATTC
* * *
44961626 AATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACG
1 AATGCCTTC-GGACTTAACCCGGATATTAGTAACTCGCACA
*
44961666 AATGCCTTCGGACTTAACCCGGA-ATTAGTATCTCGCACA
1 AATGCCTTCGGACTTAACCCGGATATTAGTAACTCGCACA
* *
44961705 AAGGCCTTCGGACTTAACCCGGA-A-TAATAACTCGCACA
1 AATGCCTTCGGACTTAACCCGGATATTAGTAACTCGCACA
* ** * *
44961743 AATACCTTCGGATCTTAGTCCGGATATTAGTCACTTAGCACA
1 AATGCCTTCGGA-CTTAACCCGGATATTAGTAAC-TCGCACA
*
44961785 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTC-GGACTTAACCCGGA
44961808 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
38 25 0.21
39 54 0.45
40 10 0.08
41 20 0.17
42 11 0.09
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGACTTAACCCGGATATTAGTAACTCGCACA
Found at i:44965684 original size:16 final size:16
Alignment explanation
Indices: 44965663--44965697 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
44965653 CGAAATGCCA
*
44965663 AAATGCCAAAAAGCTG
1 AAATGCCAAAAAGCAG
*
44965679 AAATGCCGAAAAGCAG
1 AAATGCCAAAAAGCAG
44965695 AAA
1 AAA
44965698 GTTTGGCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.54, C:0.17, G:0.20, T:0.09
Consensus pattern (16 bp):
AAATGCCAAAAAGCAG
Found at i:44965954 original size:29 final size:29
Alignment explanation
Indices: 44965921--44966022 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
44965911 TGAATGTGAC
* * *
44965921 TGGGCCTAACGGGCTATATAAATTTGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* * *
44965950 TGGGCCTAATAGGCCATATACAA-GTGGTT
1 TGGGCCTAATGGGCCATATA-AATATGATT
*
44965979 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATATGATT
*
44966007 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
44966023 CATACAGGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
28 18 0.30
29 41 0.67
30 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATATGATT
Found at i:44966017 original size:28 final size:28
Alignment explanation
Indices: 44965908--44966022 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 28
44965898 GTGAGCATGA
* * * *
44965908 ATATGAATGTGACTGGGCCTAACGGGCT
1 ATATGAATATGATTGGGCCTAATGGGCC
* * *
44965936 ATATAAATTTGATTTGGGCCTAATAGGCC
1 ATATGAATATGA-TTGGGCCTAATGGGCC
*
44965965 ATAT-ACA-AGTGGTTTGGGCCTAATGGGCC
1 ATATGA-ATA-T-GATTGGGCCTAATGGGCC
*
44965994 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATATGATTGGGCCTAATGGGCC
44966022 A
1 A
44966023 CATACAGGTA
Statistics
Matches: 70, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
28 28 0.40
29 39 0.56
30 3 0.04
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (28 bp):
ATATGAATATGATTGGGCCTAATGGGCC
Found at i:44975628 original size:46 final size:46
Alignment explanation
Indices: 44975575--44975750 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
44975565 TGGTTGAGCA
*
44975575 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
44975621 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
44975668 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
44975714 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44975751 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:44975731 original size:93 final size:93
Alignment explanation
Indices: 44975572--44975743 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
44975562 GGATGGTTGA
* * * *
44975572 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
44975637 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
44975665 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
*
44975730 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
44975744 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:44980215 original size:28 final size:28
Alignment explanation
Indices: 44980135--44980220 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
44980125 GTGAGCATGA
*
44980135 ATATGAATATGAATGGGCCTAACGGGCC
1 ATATGAATATGAATGGGCCTAATGGGCC
* * * *
44980163 ATATAAATGTGATTTGGGCCAAATGGGCC
1 ATATGAATATGA-ATGGGCCTAATGGGCC
*
44980192 ATATGAATATGAATGGGCTTAATGGGCC
1 ATATGAATATGAATGGGCCTAATGGGCC
44980220 A
1 A
44980221 GATACAGGTA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 24 0.51
29 23 0.49
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.26
Consensus pattern (28 bp):
ATATGAATATGAATGGGCCTAATGGGCC
Found at i:44985019 original size:29 final size:29
Alignment explanation
Indices: 44984980--44985054 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
44984970 ATCATATTCA
* * * *
44984980 ATGGCCTATTAGACCCAAACCTCCTGTAT
1 ATGGCCCATTAGGCCCAAACCACATGTAT
* * *
44985009 ATGGCCCATTAGGTCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAACCACATGTAT
44985038 ATGGCCCATTAGGCCCA
1 ATGGCCCATTAGGCCCA
44985055 GTCACATTCA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAACCACATGTAT
Found at i:44990802 original size:34 final size:34
Alignment explanation
Indices: 44990750--44990817 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
44990740 AGATGCAGTT
* *
44990750 TGGGCCTGAGCCCGTTACAGTATCAGTATCAATG
1 TGGGCCTGAGCCCATTACAGTAACAGTATCAATG
* *
44990784 TGGGCCTTAGCCTATTACAGTAACAGTATCAATG
1 TGGGCCTGAGCCCATTACAGTAACAGTATCAATG
44990818 CAGTAATGCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (34 bp):
TGGGCCTGAGCCCATTACAGTAACAGTATCAATG
Found at i:44991237 original size:27 final size:27
Alignment explanation
Indices: 44991190--44991274 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
44991180 CTCAAATACA
*
44991190 GTCATTTTACCTTATAAGGGTATTTCG
1 GTCATTTTACCCTATAAGGGTATTTCG
* * * *
44991217 TTCATTTTACCCTGTAGGGGTATTCCG
1 GTCATTTTACCCTATAAGGGTATTTCG
44991244 GTCATTTTACCCTATAAGGGTATTTCG
1 GTCATTTTACCCTATAAGGGTATTTCG
44991271 GTCA
1 GTCA
44991275 CCATTTTGGC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATAAGGGTATTTCG
Found at i:45010385 original size:30 final size:30
Alignment explanation
Indices: 45010349--45010430 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 30
45010339 TATGATATTG
* *
45010349 TATCTTGGATTTCTGTATCTTGGATTTCTT
1 TATCTTGGATTTCTGTATCTTAGACTTCTT
* * *
45010379 TATCTTGGATTTCTTTCTCCTAGACTTCTT
1 TATCTTGGATTTCTGTATCTTAGACTTCTT
*
45010409 TATCTTGGTTTTCATGTCATCT
1 TATCTTGGATTTC-TGT-ATCT
45010431 CTATTCCGTA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
30 37 0.90
31 2 0.05
32 2 0.05
ACGTcount: A:0.13, C:0.18, G:0.13, T:0.55
Consensus pattern (30 bp):
TATCTTGGATTTCTGTATCTTAGACTTCTT
Found at i:45010393 original size:15 final size:15
Alignment explanation
Indices: 45010349--45010421 Score: 92
Period size: 15 Copynumber: 4.9 Consensus size: 15
45010339 TATGATATTG
*
45010349 TATCTTGGATTTCTG
1 TATCTTGGATTTCTT
45010364 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
45010379 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* * * *
45010394 TCTCCTAGACTTCTT
1 TATCTTGGATTTCTT
*
45010409 TATCTTGGTTTTC
1 TATCTTGGATTTC
45010422 ATGTCATCTC
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 48 1.00
ACGTcount: A:0.12, C:0.18, G:0.14, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:45015524 original size:19 final size:18
Alignment explanation
Indices: 45015500--45015539 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
45015490 CGGGCTGAGG
*
45015500 ACACAGACGTGTTTGAGCC
1 ACACAGACGTGTGTGA-CC
*
45015519 ACACAGGCGTGTGTGACC
1 ACACAGACGTGTGTGACC
45015537 ACA
1 ACA
45015540 TGGCCTACCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.17
Consensus pattern (18 bp):
ACACAGACGTGTGTGACC
Found at i:45017877 original size:15 final size:16
Alignment explanation
Indices: 45017854--45017886 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
45017844 TGATCATTAC
*
45017854 TTCTTCTTC-TTCTCT
1 TTCTACTTCTTTCTCT
45017869 TTCTACTTCTTTCTCT
1 TTCTACTTCTTTCTCT
45017885 TT
1 TT
45017887 TCTTTGGAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (16 bp):
TTCTACTTCTTTCTCT
Found at i:45023475 original size:19 final size:20
Alignment explanation
Indices: 45023438--45023475 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
45023428 AGGCCTCTTT
*
45023438 GGATTCTATTTTTAATTTGG
1 GGATTCTATGTTTAATTTGG
*
45023458 GGATT-TATGTTTATTTTG
1 GGATTCTATGTTTAATTTG
45023476 CTTTAATACT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.18, C:0.03, G:0.21, T:0.58
Consensus pattern (20 bp):
GGATTCTATGTTTAATTTGG
Found at i:45027182 original size:49 final size:48
Alignment explanation
Indices: 45027110--45027297 Score: 234
Period size: 49 Copynumber: 3.8 Consensus size: 48
45027100 TGAGGTCACG
*
45027110 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GTCGCA
* * * * *
45027159 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTG-CGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGTCG--CA
*
45027208 TGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTG--TAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GTCGCA
* *
45027259 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
45027298 GCTTTGGCTA
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 75 0.63
51 38 0.32
52 1 0.01
53 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGTCGCA
Found at i:45027287 original size:100 final size:100
Alignment explanation
Indices: 45027109--45027292 Score: 332
Period size: 100 Copynumber: 1.8 Consensus size: 100
45027099 GTGAGGTCAC
*
45027109 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACTAAGT
45027174 GCAGGCTACTATGCGTACCCGAAAACTGCGATCAT
66 GCAGGCTACTATGCGTACCCGAAAACTGCGATCAT
* * *
45027209 GTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACTAAGT
45027274 GCAGGCTACTATGCGTACC
66 GCAGGCTACTATGCGTACC
45027293 AGATAGCTTT
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACTAAGT
GCAGGCTACTATGCGTACCCGAAAACTGCGATCAT
Found at i:45031096 original size:27 final size:27
Alignment explanation
Indices: 45031074--45031238 Score: 176
Period size: 27 Copynumber: 6.1 Consensus size: 27
45031064 AGTACCCTTA
*
45031074 ATTTATAGAATTATCGTTTTACCCTCG
1 ATTTATAGAATTATCATTTTACCCTCG
* *
45031101 ATTTACAAAATTAT-AGTTTTACCCTCG
1 ATTTATAGAATTATCA-TTTTACCCTCG
* *
45031128 ATTTATAGAATTA-CTATTTTAACCTCC
1 ATTTATAGAATTATC-ATTTTACCCTCG
* *
45031155 ATTTATAGAATTA-CTGTTTTACCC-CTA
1 ATTTATAGAATTATC-ATTTTACCCTC-G
* *
45031182 ATTTACAAAATTATCATTTTACCCTCG
1 ATTTATAGAATTATCATTTTACCCTCG
*
45031209 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAGAATTATCATTTTACCCTCG
45031236 ATT
1 ATT
45031239 GTGAAATTAC
Statistics
Matches: 115, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.01
27 111 0.97
28 3 0.03
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (27 bp):
ATTTATAGAATTATCATTTTACCCTCG
Found at i:45031132 original size:54 final size:55
Alignment explanation
Indices: 45031074--45031238 Score: 196
Period size: 54 Copynumber: 3.1 Consensus size: 55
45031064 AGTACCCTTA
* * *
45031074 ATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTA-TAGTTTTACCCTCG
1 ATTTATAGAATTATCATTTTACCCTCGATTTATAGAATTACTAGTTTTACCCTCG
* * *
45031128 ATTTATAGAATTA-CTATTTTAACCTCCATTTATAGAATTACT-GTTTTACCC-CTA
1 ATTTATAGAATTATC-ATTTTACCCTCGATTTATAGAATTACTAGTTTTACCCTC-G
* * *
45031182 ATTTACAAAATTATCATTTTACCCTCGATTTATAGAATTACCA-TTTTACCCTCG
1 ATTTATAGAATTATCATTTTACCCTCGATTTATAGAATTACTAGTTTTACCCTCG
45031236 ATT
1 ATT
45031239 GTGAAATTAC
Statistics
Matches: 93, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
53 2 0.02
54 88 0.95
55 3 0.03
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (55 bp):
ATTTATAGAATTATCATTTTACCCTCGATTTATAGAATTACTAGTTTTACCCTCG
Found at i:45031209 original size:81 final size:81
Alignment explanation
Indices: 45031074--45031234 Score: 247
Period size: 81 Copynumber: 2.0 Consensus size: 81
45031064 AGTACCCTTA
*
45031074 ATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTATAGTTTTACCCTCGATTTATAGAAT
1 ATTTATAGAATTATCGTTTTACCCTCAATTTACAAAATTATAGTTTTACCCTCGATTTATAGAAT
*
45031139 TACTATTTTAACCTCC
66 TACCATTTTAACCTCC
45031155 ATTTATAGAATTA-CTGTTTTACCC-CTAATTTACAAAATTATCA-TTTTACCCTCGATTTATAG
1 ATTTATAGAATTATC-GTTTTACCCTC-AATTTACAAAATTAT-AGTTTTACCCTCGATTTATAG
*
45031217 AATTACCATTTTACCCTC
63 AATTACCATTTTAACCTC
45031235 GATTGTGAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
80 2 0.03
81 71 0.96
82 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.06, T:0.43
Consensus pattern (81 bp):
ATTTATAGAATTATCGTTTTACCCTCAATTTACAAAATTATAGTTTTACCCTCGATTTATAGAAT
TACCATTTTAACCTCC
Found at i:45031260 original size:27 final size:27
Alignment explanation
Indices: 45031230--45031368 Score: 104
Period size: 27 Copynumber: 5.1 Consensus size: 27
45031220 TACCATTTTA
**
45031230 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCTCGATTGTGAAATTACCAAAATAC
* *
45031257 CCCT--ATAGGGTAGAATTACCAAAATAC
1 CCCTCGATTGTG-A-AATTACCAAAATAC
* * *
45031284 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTCGATTGTGAAATTACCAAAATAC
** * * *
45031311 CATTGGTTTGTGAAATTACCGAAATA-
1 CCCTCGATTGTGAAATTACCAAAATAC
* *
45031337 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTCGA-TTGTGAAATTACCAAAATAC
45031365 CCCT
1 CCCT
45031369 AATTTACAAA
Statistics
Matches: 86, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
25 4 0.05
26 3 0.03
27 72 0.84
28 5 0.06
29 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (27 bp):
CCCTCGATTGTGAAATTACCAAAATAC
Found at i:45031355 original size:81 final size:81
Alignment explanation
Indices: 45031237--45031396 Score: 216
Period size: 81 Copynumber: 2.0 Consensus size: 81
45031227 TTACCCTCGA
* * * * **
45031237 TTGTGAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTAGTTTGTAAAATTA
1 TTGTGAAATTACCGAAATACCCCAATAGGGTAAAATTACCAAAATACCCCTAATTTACAAAATTA
45031302 CCA-AAATACCATTGGT
66 -CATAAATACCATTGGT
**
45031318 TTGTGAAATTACCGAAATACCCTCAAT-TTGTAAAATTACCAAAATACCCCTAATTTACAAAATT
1 TTGTGAAATTACCGAAATACCC-CAATAGGGTAAAATTACCAAAATACCCCTAATTTACAAAATT
45031382 ACATAAATACCATTG
65 ACATAAATACCATTG
45031397 ACCTTCTAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 2 0.03
81 64 0.93
82 3 0.04
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (81 bp):
TTGTGAAATTACCGAAATACCCCAATAGGGTAAAATTACCAAAATACCCCTAATTTACAAAATTA
CATAAATACCATTGGT
Found at i:45031372 original size:27 final size:27
Alignment explanation
Indices: 45031270--45031392 Score: 133
Period size: 27 Copynumber: 4.6 Consensus size: 27
45031260 TATAGGGTAG
*
45031270 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
** ** *
45031297 AATTACCAAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
*
45031324 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
**
45031351 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
45031378 AATTA-CATAAATACC
1 AATTACCA-AAATACC
45031393 ATTGACCTTC
Statistics
Matches: 80, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.05
27 72 0.90
28 4 0.05
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:45031444 original size:27 final size:27
Alignment explanation
Indices: 45031371--45031456 Score: 88
Period size: 27 Copynumber: 3.1 Consensus size: 27
45031361 ATACCCCTAA
*
45031371 TTTACAAAATTACAT-AAATACCATTGACC
1 TTTACAAAATTAC-TGAAATACCATTG--G
45031400 TTCTA-AAAATTA-TAGAAATACCATTGG
1 TT-TACAAAATTACT-GAAATACCATTGG
*
45031427 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCATTGG
45031454 TTT
1 TTT
45031457 GTAGATTTAC
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
26 2 0.04
27 25 0.50
28 1 0.02
29 20 0.40
30 2 0.04
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCATTGG
Found at i:45031540 original size:27 final size:27
Alignment explanation
Indices: 45031497--45031570 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
45031487 AAATGACTAA
*
45031497 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
45031524 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
45031551 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
45031571 TGACGAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:45031574 original size:27 final size:27
Alignment explanation
Indices: 45031510--45031574 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
45031500 ACCCCTAATA
*
45031510 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
45031537 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
45031564 GGTAAAATGAC
1 GGTAAAATGAC
45031575 GAATACGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:45032765 original size:25 final size:25
Alignment explanation
Indices: 45032736--45032783 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
45032726 TTATAAAATG
* * *
45032736 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
45032761 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
45032784 GTTTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:45032867 original size:11 final size:11
Alignment explanation
Indices: 45032831--45032888 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
45032821 CATGGTATGT
45032831 ATGATATGCAC
1 ATGATATGCAC
* *
45032842 ATGACATG--T
1 ATGATATGCAC
45032851 ATGATATGCAC
1 ATGATATGCAC
*
45032862 ATGATATG--T
1 ATGATATGCAC
45032871 ATGATATGCAC
1 ATGATATGCAC
45032882 ATGATAT
1 ATGATAT
45032889 ATTCATAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
9 15 0.41
11 22 0.59
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:45032886 original size:20 final size:20
Alignment explanation
Indices: 45032820--45032888 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
45032810 ATTTTGATAA
*
45032820 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
45032840 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
45032860 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
45032880 ACATGATAT
1 ACATGATAT
45032889 ATTCATAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:45033222 original size:25 final size:24
Alignment explanation
Indices: 45032940--45033226 Score: 414
Period size: 24 Copynumber: 11.8 Consensus size: 24
45032930 AAGTGTAAAT
45032940 GGCTTATGCCCCAGTTATTAAAAAG
1 GGCTTATGCCCCAGTTATT-AAAAG
* * *
45032965 GGCTTACGCCCCGGTTATCAAAAG
1 GGCTTATGCCCCAGTTATTAAAAG
*
45032989 GGCTTACGCCCCAGTTATTAAAAG
1 GGCTTATGCCCCAGTTATTAAAAG
* *
45033013 GGCTTATGCCTCAGTTATCAAAAG
1 GGCTTATGCCCCAGTTATTAAAAG
45033037 GGCTTATGCCCCAGTTATTAAAAAG
1 GGCTTATGCCCCAGTTATT-AAAAG
* *
45033062 GGCTTACGCCTCAGTTATTAAAAAG
1 GGCTTATGCCCCAGTTATT-AAAAG
45033087 GGCTTATGCCCCAGTTATTAAAAAG
1 GGCTTATGCCCCAGTTATT-AAAAG
*
45033112 GGCTTATGCCCCAGTTATCAAAAG
1 GGCTTATGCCCCAGTTATTAAAAG
45033136 GGCTTATGCCCCAGTTATTAAAAG
1 GGCTTATGCCCCAGTTATTAAAAG
45033160 GGCTTATGCCCCAGTTATTAAAAG
1 GGCTTATGCCCCAGTTATTAAAAG
*
45033184 GGCTTTTGCCCCAGTTATTAAAAG
1 GGCTTATGCCCCAGTTATTAAAAG
*
45033208 AGGC-TAGGCCTCCAGTTAT
1 -GGCTTATGCC-CCAGTTAT
45033227 ATGATAAAGC
Statistics
Matches: 240, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
24 144 0.60
25 96 0.40
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
GGCTTATGCCCCAGTTATTAAAAG
Found at i:45033226 original size:147 final size:147
Alignment explanation
Indices: 45032940--45033206 Score: 480
Period size: 147 Copynumber: 1.8 Consensus size: 147
45032930 AAGTGTAAAT
*
45032940 GGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCGGTTATCAAAAGGGCTTACGCCCCAGTT
1 GGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTT
*
45033005 ATTAAAAGGGCTTATGCCTCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTACG
66 ATTAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTACG
45033070 CCTCAGTTATTAAAAAG
131 CCTCAGTTATTAAAAAG
* *
45033087 GGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTT
1 GGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTT
* *
45033152 ATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATTAAAA
66 ATTAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAA
45033207 GAGGCTAGGC
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
147 114 1.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (147 bp):
GGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTT
ATTAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTACG
CCTCAGTTATTAAAAAG
Done.