Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Gbar_A10 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 110302803 ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32 Warning! 1825971 characters in sequence are not A, C, G, or T File 133 of 343 Found at i:44723903 original size:27 final size:27 Alignment explanation
Indices: 44723873--44724103 Score: 258 Period size: 27 Copynumber: 8.6 Consensus size: 27 44723863 TAATAAAGAG 44723873 AAATTACTGAAATACCCTCGATTTGTA 1 AAATTACTGAAATACCCTCGATTTGTA * 44723900 AAATTACCGAAATA-CCTCGATTTGTA 1 AAATTACTGAAATACCCTCGATTTGTA * * 44723926 AAATTACCGAAACACCCTCGATTTGTA 1 AAATTACTGAAATACCCTCGATTTGTA * * 44723953 AAATTACCGAAACACCCTCGATTTGTA 1 AAATTACTGAAATACCCTCGATTTGTA * 44723980 AAATTA-TCAAA-ACACCATCGATTTGTA 1 AAATTACTGAAATAC-CC-TCGATTTGTA ** * ** 44724007 AAATTACCAAAATACCTTTAATTTGTA 1 AAATTACTGAAATACCCTCGATTTGTA 44724034 AAATTACTGAAATACCCTCGATTTGTA 1 AAATTACTGAAATACCCTCGATTTGTA * * 44724061 AAATTA-TCAAA-ACACCCCTGATTTGTA 1 AAATTACTGAAATAC-CCTC-GATTTGTA 44724088 AAATTA-TCGAAATACC 1 AAATTACT-GAAATACC 44724104 ATTGTAGTGT Statistics Matches: 178, Mismatches: 17, Indels: 17 0.84 0.08 0.08 Matches are distributed among these distances: 25 4 0.02 26 37 0.21 27 125 0.70 28 8 0.04 29 4 0.02 ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30 Consensus pattern (27 bp): AAATTACTGAAATACCCTCGATTTGTA Found at i:44724001 original size:54 final size:54 Alignment explanation
Indices: 44723890--44724132 Score: 262 Period size: 54 Copynumber: 4.5 Consensus size: 54 44723880 TGAAATACCC * * * 44723890 TCGATTTGTAAAATTACCGAAATA-CCTCGATTTGTAAAATTACCGAAACACCC 1 TCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAACACCA * 44723943 TCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCAAAACACCA 1 TCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAACACCA * * ** * 44723997 TCGATTTGTAAAATTACCAAAATACCTTTAATTTGTAAAATTACTGAAATAC-CC- 1 TCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA-TCAAA-ACACCA * * * * * 44724051 TCGATTTGTAAAATTATCAAAACACCC-CTGATTTGTAAAATTATCGAAATACCA 1 TCGATTTGTAAAATTACCGAAATACCCTC-GATTTGTAAAATTATCAAAACACCA * * * 44724105 TTG-TAGTGTAAAATTATCGAAATACCCT 1 TCGAT-TTGTAAAATTACCGAAATACCCT 44724133 TGTAGTGTAA Statistics Matches: 160, Mismatches: 22, Indels: 14 0.82 0.11 0.07 Matches are distributed among these distances: 52 1 0.01 53 29 0.18 54 122 0.76 55 6 0.04 56 2 0.01 ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31 Consensus pattern (54 bp): TCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAACACCA Found at i:44724035 original size:81 final size:80 Alignment explanation
Indices: 44723873--44724103 Score: 336 Period size: 81 Copynumber: 2.9 Consensus size: 80 44723863 TAATAAAGAG * * * 44723873 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCTCGATTTGTAAAATTACCGAAA 1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCTCGATTTGTAAAATTACCGAAA * * 44723938 CACCCTCGATTTGTA 66 TACCCTCAATTTGTA * * * 44723953 AAATTACCGAAACACCCTCGATTTGTAAAATTATCAAAACACCATCGATTTGTAAAATTACCAAA 1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACC-TCGATTTGTAAAATTACCGAA * * 44724018 ATACCTTTAATTTGTA 65 ATACCCTCAATTTGTA * * 44724034 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCCCTGATTTGTAAAATTATCGAA 1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCTC-GATTTGTAAAATTACCGAA 44724099 ATACC 65 ATACC 44724104 ATTGTAGTGT Statistics Matches: 134, Mismatches: 15, Indels: 3 0.88 0.10 0.02 Matches are distributed among these distances: 80 39 0.29 81 95 0.71 ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30 Consensus pattern (80 bp): AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCTCGATTTGTAAAATTACCGAAA TACCCTCAATTTGTA Found at i:44724114 original size:27 final size:27 Alignment explanation
Indices: 44724084--44724145 Score: 115 Period size: 27 Copynumber: 2.3 Consensus size: 27 44724074 ACCCCTGATT 44724084 TGTAAAATTATCGAAATACCATTGTAG 1 TGTAAAATTATCGAAATACCATTGTAG * 44724111 TGTAAAATTATCGAAATACCCTTGTAG 1 TGTAAAATTATCGAAATACCATTGTAG 44724138 TGTAAAAT 1 TGTAAAAT 44724146 GACTGACATA Statistics Matches: 34, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 27 34 1.00 ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34 Consensus pattern (27 bp): TGTAAAATTATCGAAATACCATTGTAG Found at i:44724115 original size:81 final size:81 Alignment explanation
Indices: 44723873--44724132 Score: 325 Period size: 81 Copynumber: 3.2 Consensus size: 81 44723863 TAATAAAGAG * * * * 44723873 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCTC-GATTTGTAAAATTACCGAA 1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCCCTGATTTGTAAAATTACCGAA * * 44723937 ACACCCTCG-ATTTGTA 66 ATA-CCTTGTATTTGTA * * * * 44723953 AAATTACCGAAACACCCTCGATTTGTAAAATTATCAAAACA-CCATCGATTTGTAAAATTACCAA 1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCCCT-GATTTGTAAAATTACCGA 44724017 AATACCTT-TAATTTGTA 65 AATACCTTGT-ATTTGTA * 44724034 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCCCTGATTTGTAAAATTATCGAA 1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCCCTGATTTGTAAAATTACCGAA * 44724099 ATACCATTGTA-GTGTA 66 ATACC-TTGTATTTGTA 44724115 AAATTA-TCGAAATACCCT 1 AAATTACT-GAAATACCCT 44724133 TGTAGTGTAA Statistics Matches: 156, Mismatches: 16, Indels: 15 0.83 0.09 0.08 Matches are distributed among these distances: 79 1 0.01 80 40 0.26 81 108 0.69 82 6 0.04 83 1 0.01 ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31 Consensus pattern (81 bp): AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAACACCCCTGATTTGTAAAATTACCGAA ATACCTTGTATTTGTA Found at i:44724156 original size:27 final size:28 Alignment explanation
Indices: 44724084--44724176 Score: 111 Period size: 27 Copynumber: 3.4 Consensus size: 28 44724074 ACCCCTGATT * * 44724084 TGTAAAATTA-TCGAAATACCATTGTAG 1 TGTAAAATGACTCGAAATACCCTTGTAG * 44724111 TGTAAAATTA-TCGAAATACCCTTGTAG 1 TGTAAAATGACTCGAAATACCCTTGTAG * * 44724138 TGTAAAATGACT-GACATACCCCTGTAG 1 TGTAAAATGACTCGAAATACCCTTGTAG * 44724165 GGTAAAATGACT 1 TGTAAAATGACT 44724177 ATTTTCCCCT Statistics Matches: 60, Mismatches: 5, Indels: 2 0.90 0.07 0.03 Matches are distributed among these distances: 27 59 0.98 28 1 0.02 ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30 Consensus pattern (28 bp): TGTAAAATGACTCGAAATACCCTTGTAG Found at i:44732270 original size:26 final size:26 Alignment explanation
Indices: 44732235--44732297 Score: 110 Period size: 26 Copynumber: 2.5 Consensus size: 26 44732225 GTCATAGCCA 44732235 AATT-TAACATTTCATAACAGCATTT 1 AATTATAACATTTCATAACAGCATTT * 44732260 AATTATAACATTTCATAATAGCATTT 1 AATTATAACATTTCATAACAGCATTT 44732286 AATTATAACATT 1 AATTATAACATT 44732298 AAACTATCAA Statistics Matches: 36, Mismatches: 1, Indels: 1 0.95 0.03 0.03 Matches are distributed among these distances: 25 4 0.11 26 32 0.89 ACGTcount: A:0.43, C:0.13, G:0.03, T:0.41 Consensus pattern (26 bp): AATTATAACATTTCATAACAGCATTT Found at i:44732271 original size:13 final size:13 Alignment explanation
Indices: 44732255--44732297 Score: 59 Period size: 13 Copynumber: 3.3 Consensus size: 13 44732245 TTCATAACAG 44732255 CATTTAATTATAA 1 CATTTAATTATAA * * * 44732268 CATTTCATAATAG 1 CATTTAATTATAA 44732281 CATTTAATTATAA 1 CATTTAATTATAA 44732294 CATT 1 CATT 44732298 AAACTATCAA Statistics Matches: 24, Mismatches: 6, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 13 24 1.00 ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44 Consensus pattern (13 bp): CATTTAATTATAA Found at i:44735847 original size:43 final size:43 Alignment explanation
Indices: 44735723--44735879 Score: 174 Period size: 43 Copynumber: 3.7 Consensus size: 43 44735713 TGTGTTATCG * * * 44735723 TGTAAGACCATGACTGGGACATTGGCATCGACT-TATGATTTACA 1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGATTT-CA * * * 44735767 TGTGAGACCACGTCTGAGACATTGGCATCG-TACTTGATTTCA 1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTCA ** * * ** 44735809 TGTAAGACCTTGTCTAGGACAGTGGCATCGATATTTGATGACA 1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTCA 44735852 TGTAAGACCACGTCTGGGACATTGGCAT 1 TGTAAGACCACGTCTGGGACATTGGCAT 44735880 TGTATGAGCT Statistics Matches: 92, Mismatches: 19, Indels: 5 0.79 0.16 0.04 Matches are distributed among these distances: 42 27 0.29 43 39 0.42 44 26 0.28 ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29 Consensus pattern (43 bp): TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTCA Found at i:44735873 original size:85 final size:86 Alignment explanation
Indices: 44735723--44735879 Score: 219 Period size: 85 Copynumber: 1.8 Consensus size: 86 44735713 TGTGTTATCG * * * * 44735723 TGTAAGACCATGACTGGGACATTGGCATCGACTTATGATTTACATGTGAGACCACGTCTGAGACA 1 TGTAAGACCATGACTAGGACAGTGGCATCGACTTATGATTGACATGTAAGACCACGTCTGAGACA 44735788 TTGGCATCGTACTTGATTTCA 66 TTGGCATCGTACTTGATTTCA * * * * 44735809 TGTAAGACCTTGTCTAGGACAGTGGCATCGA-TATTTGA-TGACATGTAAGACCACGTCTGGGAC 1 TGTAAGACCATGACTAGGACAGTGGCATCGACT-TATGATTGACATGTAAGACCACGTCTGAGAC 44735872 ATTGGCAT 65 ATTGGCAT 44735880 TGTATGAGCT Statistics Matches: 62, Mismatches: 8, Indels: 3 0.85 0.11 0.04 Matches are distributed among these distances: 85 31 0.50 86 31 0.50 ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29 Consensus pattern (86 bp): TGTAAGACCATGACTAGGACAGTGGCATCGACTTATGATTGACATGTAAGACCACGTCTGAGACA TTGGCATCGTACTTGATTTCA Found at i:44740256 original size:22 final size:22 Alignment explanation
Indices: 44740214--44740257 Score: 54 Period size: 22 Copynumber: 2.0 Consensus size: 22 44740204 AATTATTTAC * * 44740214 GACTAAAGTATAGCGTTCATAT 1 GACTAAAGAATAGCGTGCATAT 44740236 GACTAAATGAATAGC-TGCATAT 1 GACTAAA-GAATAGCGTGCATAT 44740258 ACGCATATTC Statistics Matches: 19, Mismatches: 2, Indels: 2 0.83 0.09 0.09 Matches are distributed among these distances: 22 13 0.68 23 6 0.32 ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30 Consensus pattern (22 bp): GACTAAAGAATAGCGTGCATAT Found at i:44740558 original size:40 final size:40 Alignment explanation
Indices: 44740484--44740704 Score: 322 Period size: 40 Copynumber: 5.6 Consensus size: 40 44740474 AACCCAAGTA * * 44740484 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG * * * 44740523 CCTTCGAGTCTTAGCCCGGATATAGTCAATAGCACAAAAG 1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG * 44740563 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG * 44740603 CCTTCGGGACTTAGCCCGGATATTGTCAATAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG * * 44740643 -CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG 1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG * 44740682 CCTTCGGGACTTAGCCCAGATAT 1 CCTTCGGGACTTAGCCCGGATAT 44740705 CATTCGAATA Statistics Matches: 164, Mismatches: 15, Indels: 5 0.89 0.08 0.03 Matches are distributed among these distances: 39 47 0.29 40 114 0.70 41 3 0.02 ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG Found at i:44740686 original size:79 final size:80 Alignment explanation
Indices: 44740484--44740704 Score: 340 Period size: 79 Copynumber: 2.8 Consensus size: 80 44740474 AACCCAAGTA * * * * 44740484 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGAGTCTTAGCCCGGATATA 1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA 44740547 GTCAATAGCACAAAAG 65 GTCAATAGCACAAAAG * 44740563 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATTG 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG * 44740628 TCAATAGCACAAATG 66 TCAATAGCACAAAAG * * 44740643 -CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGACTTAGCCCAGATAT 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT 44740705 CATTCGAATA Statistics Matches: 132, Mismatches: 8, Indels: 4 0.92 0.06 0.03 Matches are distributed among these distances: 79 73 0.55 80 58 0.44 81 1 0.01 ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23 Consensus pattern (80 bp): CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG TCAATAGCACAAAAG Found at i:44740695 original size:119 final size:119 Alignment explanation
Indices: 44740484--44740704 Score: 347 Period size: 119 Copynumber: 1.9 Consensus size: 119 44740474 AACCCAAGTA * * * 44740484 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGAGTCTTAGCCCGGATATAGT 1 CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGT * 44740549 CAATAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG 66 CAATAGCACAAAAGCCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATG * * 44740603 CCTTCGGGACTTAGCCCGGATATTGTCAA-TAGCACAAATG-CTTCGGGACTTAGCCCGGATATA 1 CCTTCGGGACTTAG-CCGGATATAG-CAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATA * 44740666 GTCACTAGCACAAAAGCCTTCGGGACTTAGCCCAGATAT 64 GTCAATAGCACAAAAGCCTTCGGGACTTAGCCCAGATAT 44740705 CATTCGAATA Statistics Matches: 93, Mismatches: 7, Indels: 4 0.89 0.07 0.04 Matches are distributed among these distances: 119 71 0.76 120 19 0.20 121 3 0.03 ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23 Consensus pattern (119 bp): CCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGT CAATAGCACAAAAGCCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATG Found at i:44744451 original size:31 final size:31 Alignment explanation
Indices: 44744372--44744484 Score: 137 Period size: 31 Copynumber: 3.7 Consensus size: 31 44744362 TTAGTCTTGA * 44744372 CATAT-ACTGGGCCGAAGCC-TTTCATTTAA- 1 CATATCACTGGGCCGAAGCCTTTTCA-TAAAT * 44744401 CGAT-T-ACTGCGCCGAAGCCTTTTCATAAAT 1 C-ATATCACTGGGCCGAAGCCTTTTCATAAAT * 44744431 CATATCACTGGGCCAAAGCCTTTTCATAAAT 1 CATATCACTGGGCCGAAGCCTTTTCATAAAT * 44744462 CATTTCACTGGGCCGAAGCCTTT 1 CATATCACTGGGCCGAAGCCTTT 44744485 ACTATAAACG Statistics Matches: 73, Mismatches: 6, Indels: 8 0.84 0.07 0.09 Matches are distributed among these distances: 29 20 0.27 30 9 0.12 31 44 0.60 ACGTcount: A:0.27, C:0.27, G:0.17, T:0.30 Consensus pattern (31 bp): CATATCACTGGGCCGAAGCCTTTTCATAAAT Found at i:44744567 original size:42 final size:42 Alignment explanation
Indices: 44744508--44744595 Score: 140 Period size: 42 Copynumber: 2.1 Consensus size: 42 44744498 TGACCCATAG * ** * 44744508 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA 1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA 44744550 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA 1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA 44744592 GCCC 1 GCCC 44744596 GTTTGGGGAG Statistics Matches: 42, Mismatches: 4, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 42 42 1.00 ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27 Consensus pattern (42 bp): GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA Found at i:44744788 original size:26 final size:26 Alignment explanation
Indices: 44744744--44744893 Score: 239 Period size: 26 Copynumber: 5.8 Consensus size: 26 44744734 CCTCTTTAAT * 44744744 AACTAGGGCA-AAGCCCTTTTCAGTA 1 AACTGGGGCATAAGCCCTTTTCAGTA * 44744769 AACTGGGGCATAAGCCCTTTTCAATA 1 AACTGGGGCATAAGCCCTTTTCAGTA * * 44744795 AAGTGGGGCATAAGCCCTTTTCGGTA 1 AACTGGGGCATAAGCCCTTTTCAGTA * 44744821 AACTGGGGCATAAGCCCTTTTCAATA 1 AACTGGGGCATAAGCCCTTTTCAGTA * 44744847 AACTGGGGCATAAGCCCTTTTCGGTA 1 AACTGGGGCATAAGCCCTTTTCAGTA 44744873 AACTGGGGCATAAGCCCTTTT 1 AACTGGGGCATAAGCCCTTTT 44744894 GCACTTCCTC Statistics Matches: 114, Mismatches: 10, Indels: 1 0.91 0.08 0.01 Matches are distributed among these distances: 25 9 0.08 26 105 0.92 ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27 Consensus pattern (26 bp): AACTGGGGCATAAGCCCTTTTCAGTA Found at i:44744822 original size:52 final size:52 Alignment explanation
Indices: 44744744--44744893 Score: 266 Period size: 52 Copynumber: 2.9 Consensus size: 52 44744734 CCTCTTTAAT * * 44744744 AACTAGGGCA-AAGCCCTTTTCAGTAAACTGGGGCATAAGCCCTTTTCAATA 1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA * 44744795 AAGTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA 1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA 44744847 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT 1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT 44744894 GCACTTCCTC Statistics Matches: 94, Mismatches: 4, Indels: 1 0.95 0.04 0.01 Matches are distributed among these distances: 51 8 0.09 52 86 0.91 ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27 Consensus pattern (52 bp): AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA Found at i:44750463 original size:51 final size:49 Alignment explanation
Indices: 44750283--44750478 Score: 230 Period size: 50 Copynumber: 3.9 Consensus size: 49 44750273 TAGCCAAAGC * * * 44750283 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT 1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT * * * * * 44750332 TATCTGCTACACGTAGTAGTCTGCACTTAGTACTACACACATGACCTAAC 1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT * * * * * 44750382 CATCTGATACACGTAGTAGCCTGCAGTTAGTACTACACACGTGATCGAAGT 1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T * * 44750433 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC 1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC 44750479 TCACAATAGA Statistics Matches: 122, Mismatches: 22, Indels: 5 0.82 0.15 0.03 Matches are distributed among these distances: 49 39 0.32 50 44 0.36 51 39 0.32 ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26 Consensus pattern (49 bp): TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT Found at i:44750478 original size:101 final size:99 Alignment explanation
Indices: 44750296--44750479 Score: 260 Period size: 101 Copynumber: 1.8 Consensus size: 99 44750286 CTGGTACGCA * * * * 44750296 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGCTACACGTAGTAGTCTGCACTTA 1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGCTACACATAGTAGCCTGCACTTA 44750361 GTACTACACACATGACCTAACCATCTGATACACG 66 GTACTACACACATGACCTAACCATCTGATACACG * * * * * 44750395 TAGTAGCCTGCAGTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT 1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGCTACACATAGTAGCCTGCACT * 44750460 TAGTACTACACACGTGACCT 64 TAGTACTACACACATGACCT 44750480 CACAATAGAT Statistics Matches: 73, Mismatches: 10, Indels: 2 0.86 0.12 0.02 Matches are distributed among these distances: 99 28 0.38 100 3 0.04 101 42 0.58 ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26 Consensus pattern (99 bp): TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGCTACACATAGTAGCCTGCACTTA GTACTACACACATGACCTAACCATCTGATACACG Found at i:44753342 original size:43 final size:43 Alignment explanation
Indices: 44753281--44753364 Score: 141 Period size: 43 Copynumber: 2.0 Consensus size: 43 44753271 TTACCAAAAT ** 44753281 TAACCTTTTTTGCTAACTGCAATGTTGCGAAAATTAAACAAAG 1 TAACCTTTTTCACTAACTGCAATGTTGCGAAAATTAAACAAAG * 44753324 TAACCTTTTTCACTAACTGCGATGTTGCGAAAATTAAACAA 1 TAACCTTTTTCACTAACTGCAATGTTGCGAAAATTAAACAA 44753365 TCTTTCGGTC Statistics Matches: 38, Mismatches: 3, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 43 38 1.00 ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32 Consensus pattern (43 bp): TAACCTTTTTCACTAACTGCAATGTTGCGAAAATTAAACAAAG Found at i:44765008 original size:38 final size:38 Alignment explanation
Indices: 44764926--44765009 Score: 105 Period size: 38 Copynumber: 2.2 Consensus size: 38 44764916 ATATGCTGGA * 44764926 ATTATATCCGGGTTAAATCCCACAGGCTTCGTGCTAGT 1 ATTATATCCGGGTTAAATCCCACAGGCCTCGTGCTAGT * ** * * * 44764964 AATATATCCGGGTTAAATCCTGCAGGCCTGGTGTTGGT 1 ATTATATCCGGGTTAAATCCCACAGGCCTCGTGCTAGT 44765002 ATTATATC 1 ATTATATC 44765010 TGAGTTTAAA Statistics Matches: 38, Mismatches: 8, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 38 38 1.00 ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33 Consensus pattern (38 bp): ATTATATCCGGGTTAAATCCCACAGGCCTCGTGCTAGT Found at i:44773169 original size:40 final size:40 Alignment explanation
Indices: 44773114--44773196 Score: 121 Period size: 40 Copynumber: 2.1 Consensus size: 40 44773104 TATTCAGATG * * * 44773114 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT 1 ATATCAGGACTAAGATCCGAAGGAAATTGTGCTAGTTACT * * 44773154 ATATCAGGACTAAGATCCGAAGGAAATTGTGCTTGTTATT 1 ATATCAGGACTAAGATCCGAAGGAAATTGTGCTAGTTACT 44773194 ATA 1 ATA 44773197 ACCGGGTTAA Statistics Matches: 38, Mismatches: 5, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 40 38 1.00 ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31 Consensus pattern (40 bp): ATATCAGGACTAAGATCCGAAGGAAATTGTGCTAGTTACT Found at i:44773214 original size:40 final size:40 Alignment explanation
Indices: 44773170--44773270 Score: 132 Period size: 40 Copynumber: 2.5 Consensus size: 40 44773160 GGACTAAGAT ** 44773170 CCGAAGGAAATT-GTGCTTGTTATTATAACCGGGTTAAGTC 1 CCGAAGG-AATTCGTGCGGGTTATTATAACCGGGTTAAGTC * 44773210 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTC 1 CCGAAGGAATTCGTGCGGGTTATTATAACCGGGTTAAGTC * * * 44773250 CCGAAGGCATTCATGCTGGTT 1 CCGAAGGAATTCGTGCGGGTT 44773271 GTTACATCCG Statistics Matches: 55, Mismatches: 5, Indels: 2 0.89 0.08 0.03 Matches are distributed among these distances: 39 3 0.05 40 52 0.95 ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30 Consensus pattern (40 bp): CCGAAGGAATTCGTGCGGGTTATTATAACCGGGTTAAGTC Found at i:44781277 original size:40 final size:40 Alignment explanation
Indices: 44781226--44781374 Score: 169 Period size: 40 Copynumber: 3.7 Consensus size: 40 44781216 CGGATGATAT * * * 44781226 CCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATAT 1 CCGGACTAAG-TCCCGAAGGCATTCGTGCTAGTTATTATAA 44781266 CCGGACTAAGAT-CCGAAGGCAATT-GTGCTAGTTATTATAA 1 CCGGACTAAG-TCCCGAAGGC-ATTCGTGCTAGTTATTATAA ** ** 44781306 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA 1 CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA ** 44781346 CCGGGTTAAGTCCCGAAGGCATTCGTGCT 1 CCGGACTAAGTCCCGAAGGCATTCGTGCT 44781375 GGTTGTTACA Statistics Matches: 99, Mismatches: 7, Indels: 6 0.88 0.06 0.05 Matches are distributed among these distances: 39 4 0.04 40 92 0.93 41 3 0.03 ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28 Consensus pattern (40 bp): CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA Found at i:44792362 original size:33 final size:34 Alignment explanation
Indices: 44792314--44792457 Score: 136 Period size: 33 Copynumber: 4.4 Consensus size: 34 44792304 TTTTTGGTGA * * * * 44792314 TGCTATGTTTGTGCTGTTTG-GTGCTGTTTTTTG 1 TGCTATTTTTATGCTGTTTTGGTGCTATTTTTTG * * 44792347 TGCAATTTTTATGCTGTTTTGGTGCTATTTTGT- 1 TGCTATTTTTATGCTGTTTTGGTGCTATTTTTTG * ** * 44792380 TGCTGTTTTGGTGATGTTTTGGTGCTATTTTTTG 1 TGCTATTTTTATGCTGTTTTGGTGCTATTTTTTG * 44792414 TGCTATTTTTATGCTG-TTTGGTG-T-TGTTTTGG 1 TGCTATTTTTATGCTGTTTTGGTGCTAT-TTTTTG * 44792446 TGCTGTTTTTAT 1 TGCTATTTTTAT 44792458 ACTTAGGTAT Statistics Matches: 90, Mismatches: 18, Indels: 7 0.78 0.16 0.06 Matches are distributed among these distances: 31 1 0.01 32 17 0.19 33 50 0.56 34 22 0.24 ACGTcount: A:0.07, C:0.08, G:0.26, T:0.59 Consensus pattern (34 bp): TGCTATTTTTATGCTGTTTTGGTGCTATTTTTTG Found at i:44792367 original size:67 final size:69 Alignment explanation
Indices: 44792285--44792447 Score: 187 Period size: 67 Copynumber: 2.4 Consensus size: 69 44792275 TTTTGCAGGT * * * * 44792285 TTTTTGTGCTATTTTGGTG-T-TTTTGGTGATGCTATGTTT-GTGCTG-TTTGGTGCTGTTTTTT 1 TTTTTATGCTGTTTTGGTGCTATTTTGGTG-TGCTAT-TTTGGTGATGTTTTGGTGCTATTTTTT 44792346 GTGCAA 64 GTGCAA * 44792352 TTTTTATGCTGTTTTGGTGCTATTTT-GT-TGCTGTTTTGGTGATGTTTTGGTGCTATTTTTTGT 1 TTTTTATGCTGTTTTGGTGCTATTTTGGTGTGCTATTTTGGTGATGTTTTGGTGCTATTTTTTGT * 44792415 GCTA 66 GCAA * * 44792419 TTTTTATGCTG-TTTGGTGTTGTTTTGGTG 1 TTTTTATGCTGTTTTGGTGCTATTTTGGTG 44792448 CTGTTTTTAT Statistics Matches: 82, Mismatches: 8, Indels: 11 0.81 0.08 0.11 Matches are distributed among these distances: 65 3 0.04 66 22 0.27 67 50 0.61 68 3 0.04 69 4 0.05 ACGTcount: A:0.07, C:0.07, G:0.28, T:0.59 Consensus pattern (69 bp): TTTTTATGCTGTTTTGGTGCTATTTTGGTGTGCTATTTTGGTGATGTTTTGGTGCTATTTTTTGT GCAA Found at i:44792444 original size:11 final size:11 Alignment explanation
Indices: 44792285--44792454 Score: 105 Period size: 11 Copynumber: 15.4 Consensus size: 11 44792275 TTTTGCAGGT * * 44792285 TTTTTGTGCTA 1 TTTTGGTGCTG 44792296 TTTTGGTG-T- 1 TTTTGGTGCTG * 44792305 TTTTGGTGATG 1 TTTTGGTGCTG * 44792316 CTATGTTTGTGCTG 1 -T-T-TTGGTGCTG 44792330 -TTTGGTGCTG 1 TTTTGGTGCTG * ** 44792340 TTTTTTGTGCAA 1 -TTTTGGTGCTG ** 44792352 TTTTTATGCTG 1 TTTTGGTGCTG * 44792363 TTTTGGTGCTA 1 TTTTGGTGCTG * 44792374 TTTTGTTGCTG 1 TTTTGGTGCTG * 44792385 TTTTGGTGATG 1 TTTTGGTGCTG * 44792396 TTTTGGTGCTAT 1 TTTTGGTGCT-G * * 44792408 TTTTTGTGCTA 1 TTTTGGTGCTG ** 44792419 TTTTTATGCTG 1 TTTTGGTGCTG * 44792430 -TTTGGTGTTG 1 TTTTGGTGCTG 44792440 TTTTGGTGCTG 1 TTTTGGTGCTG 44792451 TTTT 1 TTTT 44792455 TATACTTAGG Statistics Matches: 123, Mismatches: 27, Indels: 18 0.73 0.16 0.11 Matches are distributed among these distances: 9 8 0.07 10 17 0.14 11 73 0.59 12 17 0.14 13 1 0.01 14 7 0.06 ACGTcount: A:0.06, C:0.07, G:0.27, T:0.59 Consensus pattern (11 bp): TTTTGGTGCTG Found at i:44792448 original size:44 final size:45 Alignment explanation
Indices: 44792363--44792455 Score: 136 Period size: 44 Copynumber: 2.1 Consensus size: 45 44792353 TTTTATGCTG 44792363 TTTTGGTGCTATTTTGTTGCTGTTTTGGTGATGTTTTGGTGCTAT 1 TTTTGGTGCTATTTTGTTGCTGTTTTGGTGATGTTTTGGTGCTAT * * * 44792408 TTTTTGTGCTATTTT-TATGCTG-TTTGGTGTTGTTTTGGTGCTGT 1 TTTTGGTGCTATTTTGT-TGCTGTTTTGGTGATGTTTTGGTGCTAT 44792452 TTTT 1 TTTT 44792456 ATACTTAGGT Statistics Matches: 44, Mismatches: 3, Indels: 3 0.88 0.06 0.06 Matches are distributed among these distances: 44 25 0.57 45 19 0.43 ACGTcount: A:0.05, C:0.06, G:0.27, T:0.61 Consensus pattern (45 bp): TTTTGGTGCTATTTTGTTGCTGTTTTGGTGATGTTTTGGTGCTAT Found at i:44793122 original size:11 final size:11 Alignment explanation
Indices: 44793106--44793141 Score: 54 Period size: 11 Copynumber: 3.3 Consensus size: 11 44793096 CTGAACTTGC 44793106 TTTGGTGCTGT 1 TTTGGTGCTGT * 44793117 TTTGGTGTTGT 1 TTTGGTGCTGT * 44793128 TTTGGTGGTGT 1 TTTGGTGCTGT 44793139 TTT 1 TTT 44793142 ATTGTTCTTT Statistics Matches: 23, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 23 1.00 ACGTcount: A:0.00, C:0.03, G:0.36, T:0.61 Consensus pattern (11 bp): TTTGGTGCTGT Found at i:44793147 original size:22 final size:22 Alignment explanation
Indices: 44793106--44793153 Score: 60 Period size: 22 Copynumber: 2.2 Consensus size: 22 44793096 CTGAACTTGC * * 44793106 TTTGGTGCTGTTTTGGTGTTGT 1 TTTGGTGCTGTTTTAGTGTTCT * * 44793128 TTTGGTGGTGTTTTATTGTTCT 1 TTTGGTGCTGTTTTAGTGTTCT 44793150 TTTG 1 TTTG 44793154 CAACTATTTT Statistics Matches: 22, Mismatches: 4, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 22 22 1.00 ACGTcount: A:0.02, C:0.04, G:0.31, T:0.62 Consensus pattern (22 bp): TTTGGTGCTGTTTTAGTGTTCT Found at i:44798430 original size:13 final size:13 Alignment explanation
Indices: 44798412--44798451 Score: 80 Period size: 13 Copynumber: 3.1 Consensus size: 13 44798402 TTAATTTATA 44798412 TGTGTGAAAATTT 1 TGTGTGAAAATTT 44798425 TGTGTGAAAATTT 1 TGTGTGAAAATTT 44798438 TGTGTGAAAATTT 1 TGTGTGAAAATTT 44798451 T 1 T 44798452 ATTGTTTGTG Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 27 1.00 ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47 Consensus pattern (13 bp): TGTGTGAAAATTT Found at i:44799602 original size:43 final size:43 Alignment explanation
Indices: 44799550--44799674 Score: 128 Period size: 44 Copynumber: 2.9 Consensus size: 43 44799540 AGGATTTTGA 44799550 TATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT 1 TATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCG-T * * * * * 44799594 T-TTTGATTTGCGTGTAAGACC-CTATCTGGGACAGTAGCATTGT 1 TATGTGATTT-CGTGTAAGACCAC-GTCTGGGACATTGGCATCGT * * * * 44799637 TATGTAATTACATGTAAGACCACGTCTGGAACATTGGC 1 TATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGC 44799675 GTTGTACGAG Statistics Matches: 64, Mismatches: 13, Indels: 9 0.74 0.15 0.10 Matches are distributed among these distances: 43 31 0.48 44 33 0.52 ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33 Consensus pattern (43 bp): TATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGT Found at i:44802056 original size:42 final size:43 Alignment explanation
Indices: 44801954--44802057 Score: 138 Period size: 42 Copynumber: 2.4 Consensus size: 43 44801944 AATGTCGACA * * * * 44801954 TCCCAAATGTGGTCTTACATGTAATCAAATATCGATGCCACTG 1 TCCCAGATATGGTCTTACATGAAATCAAATATCGATGCCAATG * * * 44801997 TCCCAGACAAGGCCTTACATGAAATCAAATA-CGATGCCAATG 1 TCCCAGATATGGTCTTACATGAAATCAAATATCGATGCCAATG 44802039 TCCCAGATATGGTCTTACA 1 TCCCAGATATGGTCTTACA 44802058 AAATATCACA Statistics Matches: 51, Mismatches: 10, Indels: 1 0.82 0.16 0.02 Matches are distributed among these distances: 42 26 0.51 43 25 0.49 ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26 Consensus pattern (43 bp): TCCCAGATATGGTCTTACATGAAATCAAATATCGATGCCAATG Found at i:44807690 original size:29 final size:29 Alignment explanation
Indices: 44807631--44807747 Score: 173 Period size: 29 Copynumber: 4.1 Consensus size: 29 44807621 ATACATGCAC * * * 44807631 ATGGCCCACTAGG-CCTAATCTCATTCAT 1 ATGGCCCATTAGGCCCAAATCACATTCAT * 44807659 ATGGCCCATTAGGCCCAAATCACATTCGT 1 ATGGCCCATTAGGCCCAAATCACATTCAT * 44807688 ATGGCCCATTAGGCCCAAATTACATTCAT 1 ATGGCCCATTAGGCCCAAATCACATTCAT * 44807717 ACGGCCCATTAGGCCCAAATCACATTCAT 1 ATGGCCCATTAGGCCCAAATCACATTCAT 44807746 AT 1 AT 44807748 ACATGCTTTC Statistics Matches: 79, Mismatches: 9, Indels: 1 0.89 0.10 0.01 Matches are distributed among these distances: 28 12 0.15 29 67 0.85 ACGTcount: A:0.29, C:0.31, G:0.15, T:0.26 Consensus pattern (29 bp): ATGGCCCATTAGGCCCAAATCACATTCAT Found at i:44809554 original size:29 final size:28 Alignment explanation
Indices: 44809493--44809582 Score: 92 Period size: 29 Copynumber: 3.1 Consensus size: 28 44809483 ACATACATGC * ** * 44809493 ATATGGCCCATCAGGCCCAATTCATATTC 1 ATATGGCCCATTAGGCCCAA-TCACCTTT 44809522 ATATGGCCCATTAGGCCCGAATCACCTTT 1 ATATGGCCCATTAGGCCC-AATCACCTTT ** 44809551 ATATGGCCTGTTAGGCCCAAATCACC-TT 1 ATATGGCCCATTAGGCCC-AATCACCTTT 44809579 ATAT 1 ATAT 44809583 TCATGCTCAC Statistics Matches: 53, Mismatches: 7, Indels: 3 0.84 0.11 0.05 Matches are distributed among these distances: 28 6 0.11 29 45 0.85 30 2 0.04 ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29 Consensus pattern (28 bp): ATATGGCCCATTAGGCCCAATCACCTTT Found at i:44809820 original size:16 final size:16 Alignment explanation
Indices: 44809799--44809836 Score: 67 Period size: 16 Copynumber: 2.4 Consensus size: 16 44809789 AACTTTCAGA * 44809799 TTTTCGTCATTTTGGC 1 TTTTCGACATTTTGGC 44809815 TTTTCGACATTTTGGC 1 TTTTCGACATTTTGGC 44809831 TTTTCG 1 TTTTCG 44809837 GCTTTTGCTG Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 16 21 1.00 ACGTcount: A:0.08, C:0.18, G:0.18, T:0.55 Consensus pattern (16 bp): TTTTCGACATTTTGGC Found at i:44812378 original size:33 final size:33 Alignment explanation
Indices: 44812329--44812393 Score: 85 Period size: 33 Copynumber: 2.0 Consensus size: 33 44812319 ATATGCAAAA * 44812329 CAGTCTAGGCCGTAGCCATATTCAGTAACAGAG 1 CAGTCTAGGCCGTAGCCATATACAGTAACAGAG ** * * 44812362 CAGTCTAGGCTTTAGCCCTATACAGTAGCAGA 1 CAGTCTAGGCCGTAGCCATATACAGTAACAGA 44812394 ATGGGCCCAA Statistics Matches: 27, Mismatches: 5, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 33 27 1.00 ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23 Consensus pattern (33 bp): CAGTCTAGGCCGTAGCCATATACAGTAACAGAG Found at i:44812731 original size:27 final size:27 Alignment explanation
Indices: 44812701--44812769 Score: 113 Period size: 28 Copynumber: 2.5 Consensus size: 27 44812691 GGGCATAATC 44812701 GTCATTTTACCATAC-AGGGGTATTACG 1 GTCATTTTACC-TACAAGGGGTATTACG 44812728 GTCATTTTATCCTACAAGGGGTATTACG 1 GTCATTTTA-CCTACAAGGGGTATTACG 44812756 GTCATTTTACCTAC 1 GTCATTTTACCTAC 44812770 TTTGGGGTTT Statistics Matches: 40, Mismatches: 0, Indels: 4 0.91 0.00 0.09 Matches are distributed among these distances: 27 17 0.43 28 23 0.57 ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36 Consensus pattern (27 bp): GTCATTTTACCTACAAGGGGTATTACG Found at i:44821407 original size:30 final size:30 Alignment explanation
Indices: 44821348--44821408 Score: 86 Period size: 30 Copynumber: 2.0 Consensus size: 30 44821338 ATTCCCGAGC * * 44821348 TTAGGGGCAAAAGTGTAATTATGCAAAAGT 1 TTAGGGGCAAAAGTATAATTATACAAAAGT * * 44821378 TTAGGGGCAAAAGTATAATTTTACCAAAGT 1 TTAGGGGCAAAAGTATAATTATACAAAAGT 44821408 T 1 T 44821409 CGTATTAAAG Statistics Matches: 27, Mismatches: 4, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 30 27 1.00 ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30 Consensus pattern (30 bp): TTAGGGGCAAAAGTATAATTATACAAAAGT Found at i:44823830 original size:44 final size:44 Alignment explanation
Indices: 44822904--44823814 Score: 992 Period size: 44 Copynumber: 20.8 Consensus size: 44 44822894 CGTTACATTT * 44822904 GATCTG-TCCTCTGTCAATACAGAGACACCAAATCTGTTATCTTC 1 GATCTGCT-CTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * * * 44822948 GATATGCTCTTTGTCAATACAGAGACGACAAATCTGTTATCTTT 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * 44822992 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGCTATC-TC 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * * * 44823035 TGATCTGCTCTCTGCCAATACGGAGACACCAAATCT-TCTATCTTT 1 -GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT-TATCTTC * * * * ** 44823080 GATCTACTCTCTGTCAATACAGAAATGCTAAATCTACTATCTTC 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * * * * * 44823124 GATCTGCTCTTTGACAATATAGAGACGCCAAATCTGCTATGTTT 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * * ** 44823168 GATCTGCTCTCTGACAATATAGAGACACCAAATCTACTATCTTC 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * ** * * 44823212 GATCTGCTCTTTAG-CAATACAGATATTCCAAATCGGCTATCTTC 1 GATCTGCTCTCT-GTCAATACAGAGACGCCAAATCTGTTATCTTC * * 44823256 GATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTCATCTTC 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * 44823300 GATCTGCTCTCTGTCAATACAGAGACGCCAAATATGTCATCTTC 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * * 44823344 GATCTGCTCTCTGTCAATACAGAGACACCAAATCTGTCATATTC 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * 44823388 GATCTGCTCTCTGTCAATACAGAGACGCCAAATTTGTTATCTTC 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * * * 44823432 GATCTGTTCTCTGT-AATACAGAGACACCAAATCTGTCATCTTT 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * * * * * * 44823475 GATTTTCTCTCTGTCAATACAGAGATGCCATATTTTTTATATTC 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC ** * * * * * 44823519 GATCTATTCTCTGTTAATACAGAGACGCCAATTTTTTTATTTTC 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * * 44823563 GATCTACTCTCTGTCAATACAGAGACGCCAAATTTGTTATTTTC 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC ** * * 44823607 GATCTGCTCTCTGTCAATACAGAGACGTGAAACCTATTATCTTC 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * * * * 44823651 GATCTGCTCTCTGACAATACAGAGATGCCACATCTGCTA--TTA 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * * 44823693 G-TCTGCTCTCTGTCAATACAGAGACACCAAATTTGTTATCTTT 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * ** * * 44823736 GATCTACTCTCTGTCAATACAGAGACATCAAACCTATTATCTTC 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC * * * 44823780 GATCTGTTCTCTGACAATACAGAGACTCCAAATCT 1 GATCTGCTCTCTGTCAATACAGAGACGCCAAATCT 44823815 ACTATCAGTG Statistics Matches: 731, Mismatches: 125, Indels: 22 0.83 0.14 0.03 Matches are distributed among these distances: 41 31 0.04 42 3 0.00 43 41 0.06 44 653 0.89 45 3 0.00 ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33 Consensus pattern (44 bp): GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTC Found at i:44835818 original size:14 final size:14 Alignment explanation
Indices: 44835799--44835850 Score: 52 Period size: 14 Copynumber: 3.6 Consensus size: 14 44835789 AGTAATATAA 44835799 AATATAATAAAAAT 1 AATATAATAAAAAT * 44835813 AATATAATGAATAAT 1 AATATAAT-AAAAAT * 44835828 ATATATAGT-AAAAT 1 A-ATATAATAAAAAT * 44835842 GATATAATA 1 AATATAATA 44835851 TATTATAAAA Statistics Matches: 30, Mismatches: 5, Indels: 6 0.73 0.12 0.15 Matches are distributed among these distances: 13 6 0.20 14 12 0.40 15 6 0.20 16 6 0.20 ACGTcount: A:0.62, C:0.00, G:0.06, T:0.33 Consensus pattern (14 bp): AATATAATAAAAAT Found at i:44835853 original size:20 final size:19 Alignment explanation
Indices: 44835823--44835867 Score: 63 Period size: 22 Copynumber: 2.2 Consensus size: 19 44835813 AATATAATGA 44835823 ATAATATATATAGTAAAATGAT 1 ATAATATAT-TA-TAAAAT-AT 44835845 ATAATATATTATAAAATAT 1 ATAATATATTATAAAATAT 44835864 ATAA 1 ATAA 44835868 ATAAAACTTA Statistics Matches: 23, Mismatches: 0, Indels: 3 0.88 0.00 0.12 Matches are distributed among these distances: 19 6 0.26 20 6 0.26 21 2 0.09 22 9 0.39 ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38 Consensus pattern (19 bp): ATAATATATTATAAAATAT Found at i:44835870 original size:20 final size:22 Alignment explanation
Indices: 44835800--44835867 Score: 72 Period size: 21 Copynumber: 3.3 Consensus size: 22 44835790 GTAATATAAA * * * * 44835800 ATATAATAAAAATAATATAATG 1 ATATAATATATATAGTAAAATG 44835822 A-ATAATATATATAGTAAAATG 1 ATATAATATATATAGTAAAATG 44835843 ATATAATATAT-TA-TAAAAT- 1 ATATAATATATATAGTAAAATG 44835862 ATATAA 1 ATATAA 44835868 ATAAAACTTA Statistics Matches: 41, Mismatches: 4, Indels: 5 0.82 0.08 0.10 Matches are distributed among these distances: 19 6 0.15 20 6 0.15 21 19 0.46 22 10 0.24 ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35 Consensus pattern (22 bp): ATATAATATATATAGTAAAATG Found at i:44835938 original size:18 final size:17 Alignment explanation
Indices: 44835917--44835967 Score: 59 Period size: 18 Copynumber: 2.9 Consensus size: 17 44835907 CTAAAAATAA 44835917 TATATATAATAAATCATT 1 TATATATAATAAAT-ATT 44835935 TATATATACAT-AATATT 1 TATATATA-ATAAATATT * 44835952 TATAGTAAAATAAATA 1 TATA-TATAATAAATA 44835968 ATATATAAAA Statistics Matches: 29, Mismatches: 1, Indels: 6 0.81 0.03 0.17 Matches are distributed among these distances: 17 9 0.31 18 18 0.62 19 2 0.07 ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41 Consensus pattern (17 bp): TATATATAATAAATATT Found at i:44835989 original size:25 final size:27 Alignment explanation
Indices: 44835952--44836003 Score: 81 Period size: 25 Copynumber: 2.0 Consensus size: 27 44835942 ACATAATATT 44835952 TATAGTAAAATAAATAATATAT-AAAA 1 TATAGTAAAATAAATAATATATGAAAA * 44835978 TATA-TAAAATAAATAATTTATGAAAA 1 TATAGTAAAATAAATAATATATGAAAA 44836004 AAAATAGAAA Statistics Matches: 24, Mismatches: 1, Indels: 2 0.89 0.04 0.07 Matches are distributed among these distances: 25 16 0.67 26 8 0.33 ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33 Consensus pattern (27 bp): TATAGTAAAATAAATAATATATGAAAA Found at i:44838696 original size:27 final size:27 Alignment explanation
Indices: 44838666--44838897 Score: 304 Period size: 27 Copynumber: 8.6 Consensus size: 27 44838656 TTAGTTTACC 44838666 AAATTACCAAAATACCCCTGGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * * * * 44838693 AAATCACTAAAATA-CCTTGGTTTATA 1 AAATTACCAAAATACCCCTGGTTTGTA * * 44838719 AAATCACCAAAATACCCCTAGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * * * * 44838746 AAATTACTAAAATACCCTTTGTTTATA 1 AAATTACCAAAATACCCCTGGTTTGTA 44838773 AAATTACCAAAATACCCCTGGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * 44838800 AAATTACCAAAATACCCCTGATTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * 44838827 AAATTACCAAAATACCCCTGATTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * * * 44838854 AAATTACCAAAATAACCCTGATTTGTG 1 AAATTACCAAAATACCCCTGGTTTGTA ** 44838881 AAATTACTTAAATACCC 1 AAATTACCAAAATACCC 44838898 TCGACCTGTA Statistics Matches: 181, Mismatches: 23, Indels: 2 0.88 0.11 0.01 Matches are distributed among these distances: 26 23 0.13 27 158 0.87 ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31 Consensus pattern (27 bp): AAATTACCAAAATACCCCTGGTTTGTA Found at i:44838825 original size:81 final size:82 Alignment explanation
Indices: 44838666--44838951 Score: 298 Period size: 81 Copynumber: 3.5 Consensus size: 82 44838656 TTAGTTTACC * * * * * * * 44838666 AAATTACCAAAATACCC-CTGGTTTGTAAAATCACTAAAATA-CCTTGGTTTATAAAATCACCAA 1 AAATTACCAAAATACCCTTTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA 44838729 AATACCCCT-AGTTTGTA 66 AATACCCCTGA-TTTGTA * * 44838746 AAATTACTAAAATACCCTTTG-TTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA 1 AAATTACCAAAATACCCTTTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA 44838810 AATACCCCTGATTTGTA 66 AATACCCCTGATTTGTA * * * * ** 44838827 AAATTACCAAAATACCC-CTGATTTGTAAAATTACCAAAATAACCCTGATTTGTGAAATTACTTA 1 AAATTACCAAAATACCCTTTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA ** 44838891 AATA-CCCTCGACCTGTA 66 AATACCCCT-GATTTGTA *** * * * 44838908 AAATTATTGAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCC 1 AAATTACCAAAATACCCTTTGATTTGTAAAATTACCAAAATACCC 44838952 TTGATTTACA Statistics Matches: 174, Mismatches: 26, Indels: 11 0.82 0.12 0.05 Matches are distributed among these distances: 80 41 0.24 81 132 0.76 82 1 0.01 ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31 Consensus pattern (82 bp): AAATTACCAAAATACCCTTTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA AATACCCCTGATTTGTA Found at i:44838873 original size:54 final size:53 Alignment explanation
Indices: 44838666--44838958 Score: 313 Period size: 54 Copynumber: 5.5 Consensus size: 53 44838656 TTAGTTTACC * * * * * 44838666 AAATTACCAAAATACCCCTGGTTTGTAAAATCACTAAAATACCTTGGTTTATA 1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTGATTTGTA * * 44838719 AAATCACCAAAATACCCCT-AGTTTGTAAAATTACTAAAATACCCTTTG-TTTATA 1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACTAAAATACCC--TGATTTGTA * * 44838773 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTA 1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATA-CCCTGATTTGTA * * 44838827 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATAACCCTGATTTGTG 1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAAT-ACCCTGATTTGTA ** ** * * * * 44838881 AAATTACTTAAATA-CCCTCGACCTGTAAAATTATTGAAATACCTTCGACTTGTA 1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACTAAAATACCCT-GATTTGTA * * 44838935 AAATTACCAAAGTACCCTTGATTT 1 AAATTACCAAAATACCCCTGATTT 44838959 ACAGAATTAT Statistics Matches: 204, Mismatches: 26, Indels: 19 0.82 0.10 0.08 Matches are distributed among these distances: 53 49 0.24 54 146 0.72 55 9 0.04 ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32 Consensus pattern (53 bp): AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTGATTTGTA Found at i:44838911 original size:27 final size:27 Alignment explanation
Indices: 44838666--44838958 Score: 251 Period size: 27 Copynumber: 10.9 Consensus size: 27 44838656 TTAGTTTACC * 44838666 AAATTACCAAAATACCC-CTGGTTTGTA 1 AAATTACCAAAATACCCTC-GATTTGTA * * * * * 44838693 AAATCACTAAAATA-CCTTGGTTTATA 1 AAATTACCAAAATACCCTCGATTTGTA * * 44838719 AAATCACCAAAATACCC-CTAGTTTGTA 1 AAATTACCAAAATACCCTCGA-TTTGTA * * * 44838746 AAATTACTAAAATACCCTTTG-TTTATA 1 AAATTACCAAAATACCC-TCGATTTGTA * 44838773 AAATTACCAAAATACCC-CTGGTTTGTA 1 AAATTACCAAAATACCCTC-GATTTGTA 44838800 AAATTACCAAAATACCC-CTGATTTGTA 1 AAATTACCAAAATACCCTC-GATTTGTA 44838827 AAATTACCAAAATACCC-CTGATTTGTA 1 AAATTACCAAAATACCCTC-GATTTGTA * 44838854 AAATTACCAAAATAACCCT-GATTTGTG 1 AAATTACCAAAAT-ACCCTCGATTTGTA ** ** 44838881 AAATTACTTAAATACCCTCGACCTGTA 1 AAATTACCAAAATACCCTCGATTTGTA *** * * 44838908 AAATTATTGAAATACCTTCGACTTGTA 1 AAATTACCAAAATACCCTCGATTTGTA * * 44838935 AAATTACCAAAGTACCCTTGATTT 1 AAATTACCAAAATACCCTCGATTT 44838959 ACAGAATTAT Statistics Matches: 221, Mismatches: 35, Indels: 20 0.80 0.13 0.07 Matches are distributed among these distances: 26 28 0.13 27 189 0.86 28 4 0.02 ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32 Consensus pattern (27 bp): AAATTACCAAAATACCCTCGATTTGTA Found at i:44839004 original size:27 final size:27 Alignment explanation
Indices: 44838907--44839006 Score: 85 Period size: 27 Copynumber: 3.7 Consensus size: 27 44838897 CTCGACCTGT * * * ** 44838907 AAAATTATTGAAATACCTTCGACTTGT 1 AAAATTATCGAAATACCCTCGATTTAC * * 44838934 AAAATTA-CCAAAGTACCCTTGATTTAC 1 AAAATTATCGAAA-TACCCTCGATTTAC * *** 44838961 AGAATTATCGTTTTACCCTCGATTTAC 1 AAAATTATCGAAATACCCTCGATTTAC 44838988 AAAATTATCGAAATACCCT 1 AAAATTATCGAAATACCCT 44839007 TGTAGGGTGG Statistics Matches: 54, Mismatches: 17, Indels: 4 0.72 0.23 0.05 Matches are distributed among these distances: 26 3 0.06 27 50 0.93 28 1 0.02 ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34 Consensus pattern (27 bp): AAAATTATCGAAATACCCTCGATTTAC Found at i:44839028 original size:27 final size:27 Alignment explanation
Indices: 44838990--44839238 Score: 311 Period size: 27 Copynumber: 9.3 Consensus size: 27 44838980 CGATTTACAA * * * 44838990 AATTATCGAAATACCCTTGTAGGGTGG 1 AATTACCGAAATACCCCTGTAGGGTAG * * * 44839017 AAATACCAAAATACCCCTATAGGGTAG 1 AATTACCGAAATACCCCTGTAGGGTAG * * 44839044 AATTAACGAAATACCCCTATAGGGTAG 1 AATTACCGAAATACCCCTGTAGGGTAG 44839071 AATTACCGAAATACCCCTGTAGGGTAG 1 AATTACCGAAATACCCCTGTAGGGTAG ** * 44839098 AATTACTAAAATACCCTTGTAGGGTAG 1 AATTACCGAAATACCCCTGTAGGGTAG * * 44839125 AATTACCGAAATACCCTTGTAAGGTAG 1 AATTACCGAAATACCCCTGTAGGGTAG 44839152 AATTACCGAAATACCCCTGTAGGGTAG 1 AATTACCGAAATACCCCTGTAGGGTAG ** * 44839179 AATTACTAAAATACTCCTGTAGGGTAG 1 AATTACCGAAATACCCCTGTAGGGTAG * * * * 44839206 AATTACCGAGATA-CCTTGTGGGGTAA 1 AATTACCGAAATACCCCTGTAGGGTAG 44839232 AATTACC 1 AATTACC 44839239 ATTTTGCCCC Statistics Matches: 193, Mismatches: 29, Indels: 1 0.87 0.13 0.00 Matches are distributed among these distances: 26 16 0.08 27 177 0.92 ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25 Consensus pattern (27 bp): AATTACCGAAATACCCCTGTAGGGTAG Found at i:44839671 original size:19 final size:19 Alignment explanation
Indices: 44839643--44839707 Score: 63 Period size: 19 Copynumber: 3.8 Consensus size: 19 44839633 TATTCACATT * 44839643 CTGATTTTGATTCTGTTAC 1 CTGATATTGATTCTGTTAC 44839662 CTGATATTGATTCTG--A- 1 CTGATATTGATTCTGTTAC 44839678 -T--T-TTGATTCTGTTAC 1 CTGATATTGATTCTGTTAC * 44839693 CTGATACTGATTCTG 1 CTGATATTGATTCTG 44839708 ATTCTGATTC Statistics Matches: 37, Mismatches: 2, Indels: 14 0.70 0.04 0.26 Matches are distributed among these distances: 12 9 0.24 13 1 0.03 14 1 0.03 15 1 0.03 16 1 0.03 17 1 0.03 18 1 0.03 19 22 0.59 ACGTcount: A:0.18, C:0.15, G:0.17, T:0.49 Consensus pattern (19 bp): CTGATATTGATTCTGTTAC Found at i:44839678 original size:6 final size:6 Alignment explanation
Indices: 44839640--44839727 Score: 67 Period size: 6 Copynumber: 14.3 Consensus size: 6 44839630 TTGTATTCAC * * 44839640 ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTTTG ATTCTG 1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG * 44839689 -TTACCTG ATACTG ATTCTG ATTCTG ATTCT- AGTTCTG AT 1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT 44839728 AATGTTTCTT Statistics Matches: 66, Mismatches: 6, Indels: 20 0.72 0.07 0.22 Matches are distributed among these distances: 5 6 0.09 6 50 0.76 7 7 0.11 8 2 0.03 9 1 0.02 ACGTcount: A:0.19, C:0.15, G:0.16, T:0.50 Consensus pattern (6 bp): ATTCTG Found at i:44839678 original size:31 final size:31 Alignment explanation
Indices: 44839640--44839718 Score: 140 Period size: 31 Copynumber: 2.5 Consensus size: 31 44839630 TTGTATTCAC * 44839640 ATTCTGATTTTGATTCTGTTACCTGATATTG 1 ATTCTGATTTTGATTCTGTTACCTGATACTG 44839671 ATTCTGATTTTGATTCTGTTACCTGATACTG 1 ATTCTGATTTTGATTCTGTTACCTGATACTG * 44839702 ATTCTGATTCTGATTCT 1 ATTCTGATTTTGATTCT 44839719 AGTTCTGATA Statistics Matches: 46, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 31 46 1.00 ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51 Consensus pattern (31 bp): ATTCTGATTTTGATTCTGTTACCTGATACTG Found at i:44842916 original size:29 final size:27 Alignment explanation
Indices: 44842870--44842932 Score: 67 Period size: 29 Copynumber: 2.3 Consensus size: 27 44842860 ACGAAATAAA * 44842870 TCGA-CTAGTCCGATACTTTATTCTTTCC 1 TCGATCTAGTCCGATACTTCATT-TTT-C 44842898 TCGATCTAGATCCGA-ACTTCATTTTTC 1 TCGATCTAG-TCCGATACTTCATTTTTC * 44842925 TTGATCTA 1 TCGATCTA 44842933 TATAATATCA Statistics Matches: 31, Mismatches: 2, Indels: 5 0.82 0.05 0.13 Matches are distributed among these distances: 27 8 0.26 28 7 0.23 29 11 0.35 30 5 0.16 ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43 Consensus pattern (27 bp): TCGATCTAGTCCGATACTTCATTTTTC Found at i:44849558 original size:27 final size:27 Alignment explanation
Indices: 44849528--44849631 Score: 122 Period size: 27 Copynumber: 3.9 Consensus size: 27 44849518 CTTGATTGAT * 44849528 AAATGACTGTTGTGCCCCTATGTGGTA 1 AAATGACTGTTTTGCCCCTATGTGGTA * * 44849555 AAATGACTGTTTT-TCCCTCATGAGGTA 1 AAATGACTGTTTTGCCCCT-ATGTGGTA * * 44849582 AAATGACTGTTTTGCCCTTATATGGTA 1 AAATGACTGTTTTGCCCCTATGTGGTA * * 44849609 ATATAACTGTTTTG-CCCTATGTG 1 AAATGACTGTTTTGCCCCTATGTG 44849632 ATGTAAATAT Statistics Matches: 64, Mismatches: 11, Indels: 5 0.80 0.14 0.06 Matches are distributed among these distances: 26 11 0.17 27 50 0.78 28 3 0.05 ACGTcount: A:0.24, C:0.17, G:0.20, T:0.38 Consensus pattern (27 bp): AAATGACTGTTTTGCCCCTATGTGGTA Found at i:44853743 original size:44 final size:44 Alignment explanation
Indices: 44853678--44853805 Score: 156 Period size: 44 Copynumber: 3.0 Consensus size: 44 44853668 TAGGATTCTG * * 44853678 ATATGGGATTTCATGTAAGACCACGTCTGGGACGTTGGCATCA- 1 ATATGGGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATCAT * * * 44853721 ATTTGGGATTTACGTGTAAGACCATGTTTGGGACATTGGCATCAT 1 ATATGGGATTT-CGTGTAAGACCATGTCTGGGACGTTGGCATCAT * 44853766 ATAT--GATTTCGTGTAAGACCTTGTCTGGGACAG-TGGCATC 1 ATATGGGATTTCGTGTAAGACCATGTCTGGGAC-GTTGGCATC 44853806 TTTATTTGAT Statistics Matches: 73, Mismatches: 9, Indels: 7 0.82 0.10 0.08 Matches are distributed among these distances: 42 27 0.37 43 15 0.21 44 28 0.38 45 3 0.04 ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32 Consensus pattern (44 bp): ATATGGGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATCAT Found at i:44853795 original size:42 final size:42 Alignment explanation
Indices: 44853684--44853828 Score: 157 Period size: 42 Copynumber: 3.4 Consensus size: 42 44853674 TCTGATATGG * * 44853684 GATTTCATGTAAGACCACGTCTGGGACGTTGGCATCA-ATTT 1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCATATTT * * * 44853725 GGGATTTACGTGTAAGACCATGTTTGGGACATTGGCATCATATAT 1 --GATTT-CATGTAAGACCATGTCTGGGACATTGGCATCATATTT * * * * 44853770 GATTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCTTTATTT 1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATC-ATATTT * 44853813 GATTACATGTAAGACC 1 GATTTCATGTAAGACC 44853829 TAATCTTGGA Statistics Matches: 87, Mismatches: 12, Indels: 6 0.83 0.11 0.06 Matches are distributed among these distances: 42 28 0.32 43 28 0.32 44 28 0.32 45 3 0.03 ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34 Consensus pattern (42 bp): GATTTCATGTAAGACCATGTCTGGGACATTGGCATCATATTT Found at i:44861341 original size:42 final size:43 Alignment explanation
Indices: 44861231--44861393 Score: 150 Period size: 43 Copynumber: 3.8 Consensus size: 43 44861221 CTGATATGTT * ** * * * * ** 44861231 ATTTCATGTAAGACCAAGTATGGGACGTTGGCATTGATTTGGG 1 ATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATG * * 44861274 ATTTACGTGTAAGACCATGTTTGGGACATTGGCATCG-TATATG 1 ATTT-CGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATG * * 44861317 ATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTG 1 ATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATG * * * 44861360 ATTACATGTAAGA-CCTCGTCTGGGACGTTGGCAT 1 ATTTCGTGTAAGACCCT-GTCTGGGACATTGGCAT 44861394 TGTACAAGCT Statistics Matches: 101, Mismatches: 16, Indels: 6 0.82 0.13 0.05 Matches are distributed among these distances: 42 32 0.32 43 42 0.42 44 27 0.27 ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33 Consensus pattern (43 bp): ATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGATATATG Found at i:44863393 original size:68 final size:65 Alignment explanation
Indices: 44863276--44863528 Score: 221 Period size: 68 Copynumber: 3.8 Consensus size: 65 44863266 ATACAGATGG * ** * * * * * 44863276 TATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACGAGACA 1 TATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGCTACG-GAGA 44863340 TTA 64 -TA * * 44863343 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGG-GAT 1 T-ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGGAGAT 44863407 A 65 A * * * * * 44863408 TATGTAGCTAGGTTGTATGCGTGGTTCCAAGTGAATGACACCATGTAGACAAGAGAGCTA-GGAG 1 TATGTAGCTAGGTCGCATGGGTGGTACTAAGTG--T-ACACCATGTAGACAAGAGAGCTACGGAG 44863472 ATA 63 ATA * * * 44863475 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC 1 TA-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC 44863529 CAAAATTATG Statistics Matches: 153, Mismatches: 25, Indels: 20 0.77 0.13 0.10 Matches are distributed among these distances: 62 1 0.01 63 18 0.12 64 26 0.17 65 3 0.02 66 25 0.16 67 30 0.20 68 49 0.32 69 1 0.01 ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25 Consensus pattern (65 bp): TATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGGAGATA Found at i:44874645 original size:27 final size:26 Alignment explanation
Indices: 44874591--44874696 Score: 122 Period size: 27 Copynumber: 4.0 Consensus size: 26 44874581 CATGGCTGCC * * 44874591 AGAACAGATAATGTGACAGAGTCACT 1 AGAACAGATAATGTGGCAGAGCCACT 44874617 AGAACAGATAATCGTGGCAGAGCCACT 1 AGAACAGATAAT-GTGGCAGAGCCACT * * * 44874644 AGAATAGATATATGTGGCAAAGCCACC 1 AGAACAGATA-ATGTGGCAGAGCCACT * * 44874671 AGATCAGATAATTGTGGCATAGCCAC 1 AGAACAGATAA-TGTGGCAGAGCCAC 44874697 CAGGATGCTT Statistics Matches: 69, Mismatches: 8, Indels: 5 0.84 0.10 0.06 Matches are distributed among these distances: 26 13 0.19 27 54 0.78 28 2 0.03 ACGTcount: A:0.39, C:0.19, G:0.24, T:0.19 Consensus pattern (26 bp): AGAACAGATAATGTGGCAGAGCCACT Found at i:44876128 original size:24 final size:24 Alignment explanation
Indices: 44876092--44876193 Score: 168 Period size: 24 Copynumber: 4.2 Consensus size: 24 44876082 GCCAACACTG * 44876092 CTCTCCCTAATCAGCTCCTAAATC 1 CTCTCCCTTATCAGCTCCTAAATC * * 44876116 CTCTCCCGTATCAGTTCCTAAATC 1 CTCTCCCTTATCAGCTCCTAAATC * 44876140 CTCTCCCTTATCAGTTCCTAAATC 1 CTCTCCCTTATCAGCTCCTAAATC 44876164 CTCTCCCTTATCAGCTCCTAAATC 1 CTCTCCCTTATCAGCTCCTAAATC 44876188 CTCTCC 1 CTCTCC 44876194 TGACAGACTT Statistics Matches: 73, Mismatches: 5, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 24 73 1.00 ACGTcount: A:0.21, C:0.41, G:0.05, T:0.33 Consensus pattern (24 bp): CTCTCCCTTATCAGCTCCTAAATC Found at i:44882572 original size:13 final size:13 Alignment explanation
Indices: 44882556--44882580 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 44882546 TAAAAACCAT 44882556 GTGGGAAAATTTA 1 GTGGGAAAATTTA 44882569 GTGGGAAAATTT 1 GTGGGAAAATTT 44882581 CTACACAAAA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32 Consensus pattern (13 bp): GTGGGAAAATTTA Found at i:44889242 original size:20 final size:20 Alignment explanation
Indices: 44889219--44889260 Score: 75 Period size: 20 Copynumber: 2.1 Consensus size: 20 44889209 ATACTGAGTT 44889219 TGATAATACTGAACTGATTG 1 TGATAATACTGAACTGATTG * 44889239 TGATAATACTGAATTGATTG 1 TGATAATACTGAACTGATTG 44889259 TG 1 TG 44889261 TGAATGATTA Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 20 21 1.00 ACGTcount: A:0.33, C:0.07, G:0.21, T:0.38 Consensus pattern (20 bp): TGATAATACTGAACTGATTG Found at i:44892253 original size:46 final size:46 Alignment explanation
Indices: 44892203--44892331 Score: 213 Period size: 46 Copynumber: 2.8 Consensus size: 46 44892193 TGGTTGAGCA * 44892203 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG * 44892249 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG * * * 44892295 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 44892332 GTACATGATG Statistics Matches: 77, Mismatches: 6, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 46 77 1.00 ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG Found at i:44898752 original size:47 final size:51 Alignment explanation
Indices: 44898698--44898799 Score: 167 Period size: 50 Copynumber: 2.1 Consensus size: 51 44898688 AAGTGATTCC * 44898698 AAGCCCCGTTTTTAATG-T-TTTACGTTTTT-GAATCCCGGTAGCTCGA-T 1 AAGCCCCGATTTTAATGTTCTTTACGTTTTTAGAATCCCGGTAGCTCGATT 44898745 AAGCCCCGATTTTAATGTTCTTTACGTTTTTAGAATCCCGGTAGCTCGATT 1 AAGCCCCGATTTTAATGTTCTTTACGTTTTTAGAATCCCGGTAGCTCGATT 44898796 AAGC 1 AAGC 44898800 TTGTGTTAGC Statistics Matches: 50, Mismatches: 1, Indels: 4 0.91 0.02 0.07 Matches are distributed among these distances: 47 16 0.32 48 1 0.02 49 11 0.22 50 17 0.34 51 5 0.10 ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38 Consensus pattern (51 bp): AAGCCCCGATTTTAATGTTCTTTACGTTTTTAGAATCCCGGTAGCTCGATT Found at i:44899715 original size:93 final size:93 Alignment explanation
Indices: 44899556--44899727 Score: 308 Period size: 93 Copynumber: 1.8 Consensus size: 93 44899546 GGATGGTTGA * * 44899556 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAATGTCCGAACTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAACGCCCGAACTCGTTGAGT 44899621 TGAGTCCGAGTTCGTGAGATGTAACTAG 66 TGAGTCCGAGTTCGTGAGATGTAACTAG * * 44899649 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAACGCCCGAACTCGTTGAGT 44899714 TGAGTCCGAGTTCG 66 TGAGTCCGAGTTCG 44899728 CTTATGGGCG Statistics Matches: 75, Mismatches: 4, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 93 75 1.00 ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27 Consensus pattern (93 bp): GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAACGCCCGAACTCGTTGAGT TGAGTCCGAGTTCGTGAGATGTAACTAG Found at i:44899732 original size:46 final size:46 Alignment explanation
Indices: 44899560--44899734 Score: 205 Period size: 46 Copynumber: 3.8 Consensus size: 46 44899550 GGTTGAGCAT * * * 44899560 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAATGT 1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC * * * 44899606 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC 1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC 44899651 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC 1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC * * 44899699 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG 1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 44899735 GCGGGTTACA Statistics Matches: 110, Mismatches: 10, Indels: 18 0.80 0.07 0.13 Matches are distributed among these distances: 42 2 0.02 43 4 0.04 45 3 0.03 46 62 0.56 47 28 0.25 48 4 0.04 50 4 0.04 51 3 0.03 ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28 Consensus pattern (46 bp): CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC Found at i:44902129 original size:32 final size:32 Alignment explanation
Indices: 44902093--44902157 Score: 121 Period size: 32 Copynumber: 2.0 Consensus size: 32 44902083 TCCGCTAGAG 44902093 GTCCAAGGGATAGTGTTTCCGGTTGATCTAAT 1 GTCCAAGGGATAGTGTTTCCGGTTGATCTAAT * 44902125 GTCCAAGGGATAGTGTTTCTGGTTGATCTAAT 1 GTCCAAGGGATAGTGTTTCCGGTTGATCTAAT 44902157 G 1 G 44902158 CAGCTTCCGT Statistics Matches: 32, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 32 32 1.00 ACGTcount: A:0.22, C:0.14, G:0.29, T:0.35 Consensus pattern (32 bp): GTCCAAGGGATAGTGTTTCCGGTTGATCTAAT Found at i:44911005 original size:18 final size:19 Alignment explanation
Indices: 44910975--44911030 Score: 60 Period size: 18 Copynumber: 2.9 Consensus size: 19 44910965 GCAACTCCCC 44910975 AAAACATGGTTTTCCTAAAG 1 AAAA-ATGGTTTTCCTAAAG ** * * 44910995 ACTAA-GGTTTTCGTAAAT 1 AAAAATGGTTTTCCTAAAG 44911013 AAAAATGGTTTTCCTAAA 1 AAAAATGGTTTTCCTAAA 44911031 ATAGAATGTT Statistics Matches: 28, Mismatches: 7, Indels: 3 0.74 0.18 0.08 Matches are distributed among these distances: 18 14 0.50 19 12 0.43 20 2 0.07 ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34 Consensus pattern (19 bp): AAAAATGGTTTTCCTAAAG Found at i:44913424 original size:37 final size:37 Alignment explanation
Indices: 44913361--44913543 Score: 278 Period size: 37 Copynumber: 4.9 Consensus size: 37 44913351 AGCTCAGACG * * * * 44913361 AAATCTCCACACGAAGTTATCAGGTCTTATCCGGACA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA 44913398 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGG-CA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCC-GGACA * * 44913435 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGACA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA 44913472 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA * * 44913509 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA 44913544 ACATATTTCC Statistics Matches: 134, Mismatches: 10, Indels: 4 0.91 0.07 0.03 Matches are distributed among these distances: 36 2 0.01 37 130 0.97 38 2 0.01 ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23 Consensus pattern (37 bp): AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA Found at i:44913445 original size:74 final size:74 Alignment explanation
Indices: 44913364--44913543 Score: 308 Period size: 74 Copynumber: 2.4 Consensus size: 74 44913354 TCAGACGAAA * * * * 44913364 TCTCCACACGAAGTTATCAGGTCTTATCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC 1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC 44913429 CAGG-CATAC 66 C-GGACATAC 44913438 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC 1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC 44913503 CGGACATAC 66 CGGACATAC 44913512 TCTCCACACGTAGTCATCGGGTCTTACCCGGA 1 TCTCCACACGTAGTCATCGGGTCTTACCCGGA 44913544 ACATATTTCC Statistics Matches: 101, Mismatches: 4, Indels: 2 0.94 0.04 0.02 Matches are distributed among these distances: 73 2 0.02 74 99 0.98 ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24 Consensus pattern (74 bp): TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC CGGACATAC Found at i:44913827 original size:47 final size:47 Alignment explanation
Indices: 44913748--44913988 Score: 374 Period size: 47 Copynumber: 5.1 Consensus size: 47 44913738 TATATATATT * * * * * 44913748 TCACATTGACCATTCGACTTTACCACATATATGCATGTTCATATTCA 1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA * * * * 44913795 CCACATTGGCCATTTGGCCTTATCACACATATGCATGCTCACATTCA 1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA 44913842 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA 1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA * * * 44913889 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA 1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA 44913936 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA 1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA 44913983 TCACAT 1 TCACAT 44913989 AAAATCCTAA Statistics Matches: 175, Mismatches: 19, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 47 175 1.00 ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32 Consensus pattern (47 bp): TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA Found at i:44913855 original size:94 final size:94 Alignment explanation
Indices: 44913748--44913988 Score: 419 Period size: 94 Copynumber: 2.6 Consensus size: 94 44913738 TATATATATT * * * * * * 44913748 TCACATTGACCATTCGACTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTTGGC 1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC 44913813 CTTATCACACATATGCATGCTCACATTCA 66 CTTATCACACATATGCATGCTCACATTCA 44913842 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC 1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC 44913907 CTTATCACACATATGCATGCTCACATTCA 66 CTTATCACACATATGCATGCTCACATTCA * 44913936 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT 1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACAT 44913989 AAAATCCTAA Statistics Matches: 140, Mismatches: 7, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 94 140 1.00 ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32 Consensus pattern (94 bp): TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC CTTATCACACATATGCATGCTCACATTCA Found at i:44920475 original size:14 final size:14 Alignment explanation
Indices: 44920432--44920499 Score: 75 Period size: 14 Copynumber: 4.7 Consensus size: 14 44920422 CAAGGAAACC 44920432 GAATAAAGAAATCCA 1 GAATAAAG-AATCCA * * 44920447 -AGATAGAGAAACCA 1 GA-ATAAAGAATCCA 44920461 GAATAAAGAATCCA 1 GAATAAAGAATCCA 44920475 GAATAAAGAGATCCA 1 GAATAAAGA-ATCCA * 44920490 GGATAAAGAA 1 GAATAAAGAA 44920500 ACCCAAGATA Statistics Matches: 45, Mismatches: 5, Indels: 7 0.79 0.09 0.12 Matches are distributed among these distances: 14 26 0.58 15 19 0.42 ACGTcount: A:0.57, C:0.12, G:0.19, T:0.12 Consensus pattern (14 bp): GAATAAAGAATCCA Found at i:44920509 original size:15 final size:15 Alignment explanation
Indices: 44920434--44920509 Score: 70 Period size: 15 Copynumber: 5.2 Consensus size: 15 44920424 AGGAAACCGA 44920434 ATAAAGAAATCCAAG 1 ATAAAGAAATCCAAG * 44920449 ATAGAGAAA-CC-AG 1 ATAAAGAAATCCAAG 44920462 AATAAAG-AATCC-AG 1 -ATAAAGAAATCCAAG * * 44920476 AATAAAGAGATCCAGG 1 -ATAAAGAAATCCAAG * 44920492 ATAAAGAAACCCAAG 1 ATAAAGAAATCCAAG 44920507 ATA 1 ATA 44920510 TGATACTATG Statistics Matches: 50, Mismatches: 7, Indels: 8 0.77 0.11 0.12 Matches are distributed among these distances: 13 4 0.08 14 18 0.36 15 27 0.54 16 1 0.02 ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12 Consensus pattern (15 bp): ATAAAGAAATCCAAG Found at i:44923533 original size:92 final size:93 Alignment explanation
Indices: 44923420--44923590 Score: 308 Period size: 92 Copynumber: 1.8 Consensus size: 93 44923410 GCCCATAAGT * * 44923420 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 44923485 CGAGTTCGGATGCCTAGTTACATCTCAC 66 CGAGTTCGGATGCCTAGTTACATCTCAC * 44923513 GAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 44923577 CGAGTTCGGATGCC 66 CGAGTTCGGATGCC 44923591 CAAATATCCT Statistics Matches: 75, Mismatches: 3, Indels: 1 0.95 0.04 0.01 Matches are distributed among these distances: 92 69 0.92 93 6 0.08 ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA CGAGTTCGGATGCCTAGTTACATCTCAC Found at i:44923586 original size:46 final size:46 Alignment explanation
Indices: 44923412--44923586 Score: 216 Period size: 46 Copynumber: 3.8 Consensus size: 46 44923402 TGTAACCCGC * * * 44923412 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT * 44923458 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT * * 44923508 -C-TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT 44923550 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 44923587 TGCCCAAATA Statistics Matches: 110, Mismatches: 9, Indels: 20 0.79 0.06 0.14 Matches are distributed among these distances: 41 2 0.02 42 4 0.04 43 2 0.02 44 2 0.02 45 6 0.05 46 79 0.72 47 6 0.05 48 2 0.02 49 2 0.02 50 3 0.03 51 2 0.02 ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21 Consensus pattern (46 bp): CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT Found at i:44935585 original size:24 final size:24 Alignment explanation
Indices: 44935558--44935646 Score: 106 Period size: 24 Copynumber: 3.7 Consensus size: 24 44935548 TCCACGTTTC * 44935558 CTCGCACACATAGTGCTATATAAT 1 CTCGCACACATAGTGCCATATAAT * * 44935582 CTCGCACACATAGTGCCATGTAGTT 1 CTCGCACACATAGTGCCATATA-AT * * * * 44935607 TTTGCACACATAGTGCCACATAAC 1 CTCGCACACATAGTGCCATATAAT 44935631 CTCGCACACATAGTGC 1 CTCGCACACATAGTGC 44935647 TGAAATTTCT Statistics Matches: 53, Mismatches: 11, Indels: 2 0.80 0.17 0.03 Matches are distributed among these distances: 24 34 0.64 25 19 0.36 ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26 Consensus pattern (24 bp): CTCGCACACATAGTGCCATATAAT Found at i:44938454 original size:27 final size:27 Alignment explanation
Indices: 44938359--44938445 Score: 133 Period size: 27 Copynumber: 3.2 Consensus size: 27 44938349 GGAAGTACTA 44938359 TACTGGTGG-CTCTGCCACAATTACTGT 1 TACTGGTGGCCT-TGCCACAATTACTGT * 44938386 TACTGGTGGCCTTGCCACAATTACTGA 1 TACTGGTGGCCTTGCCACAATTACTGT 44938413 TACTGGTGGCCTTGCCAC-ATATACTGT 1 TACTGGTGGCCTTGCCACAAT-TACTGT 44938440 TACTGG 1 TACTGG 44938446 CAGCTTTGCT Statistics Matches: 56, Mismatches: 2, Indels: 4 0.90 0.03 0.06 Matches are distributed among these distances: 26 2 0.04 27 52 0.93 28 2 0.04 ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32 Consensus pattern (27 bp): TACTGGTGGCCTTGCCACAATTACTGT Found at i:44943918 original size:40 final size:40 Alignment explanation
Indices: 44943797--44943943 Score: 149 Period size: 39 Copynumber: 3.8 Consensus size: 40 44943787 TGATGTGTGT * * * * * * 44943797 ATCCGGGCTTAAAGACCCGCAGGCCAT-ATGTTGGAATTGT 1 ATCCGGGTTTAAAGACCCGCAGG-CTTCGTGCTGGAATGGA * * * 44943837 ATCCGGGTTTAAAGA-CTGCAAGCTTTGTGCTGGAATGGA 1 ATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGA 44943876 ATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGA 1 ATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGA * * * 44943916 AT-CGGGGTTAAAGAACCGTAGGC-TCGTG 1 ATCCGGGTTTAAAGACCCGCAGGCTTCGTG 44943944 TTAGAAATGT Statistics Matches: 91, Mismatches: 14, Indels: 6 0.82 0.13 0.05 Matches are distributed among these distances: 38 7 0.08 39 47 0.52 40 37 0.41 ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24 Consensus pattern (40 bp): ATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGA Found at i:44952274 original size:18 final size:18 Alignment explanation
Indices: 44952251--44952296 Score: 74 Period size: 18 Copynumber: 2.6 Consensus size: 18 44952241 CACCCGATTA ** 44952251 AGCTTGTTGGATGATGGT 1 AGCTTGTTAAATGATGGT 44952269 AGCTTGTTAAATGATGGT 1 AGCTTGTTAAATGATGGT 44952287 AGCTTGTTAA 1 AGCTTGTTAA 44952297 CTGAGCTTCA Statistics Matches: 26, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 18 26 1.00 ACGTcount: A:0.24, C:0.07, G:0.30, T:0.39 Consensus pattern (18 bp): AGCTTGTTAAATGATGGT Found at i:44953833 original size:39 final size:40 Alignment explanation
Indices: 44953756--44953902 Score: 120 Period size: 40 Copynumber: 3.7 Consensus size: 40 44953746 TAGCTCCTCG * * * 44953756 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA 1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA * * 44953796 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG 1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA ** * * * * 44953835 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG 1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA ** * 44953875 CACAAAGGCCTTCGGGACTTAACCCGGA 1 TTC-AATGCCTTCGGGACTTAACCCGGA 44953903 ATTAATAACT Statistics Matches: 92, Mismatches: 12, Indels: 6 0.84 0.11 0.05 Matches are distributed among these distances: 39 27 0.29 40 65 0.71 ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25 Consensus pattern (40 bp): TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA Found at i:44953913 original size:80 final size:80 Alignment explanation
Indices: 44953802--44953982 Score: 219 Period size: 80 Copynumber: 2.3 Consensus size: 80 44953792 CTCATTCAAT * * * 44953802 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT 1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA- * 44953865 TAGT-A-TCTCGCACAAA 64 TAGTCACT-TAGCACAAA ** 44953881 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA 1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA 44953945 TAGTCACTTAGCACAAA 64 TAGTCACTTAGCACAAA * 44953962 GCCTTCGGGACTTAGCCCGGA 1 GCCTTCGGGACTTAACCCGGA 44953983 CAGCATTCAA Statistics Matches: 89, Mismatches: 7, Indels: 10 0.84 0.07 0.09 Matches are distributed among these distances: 79 7 0.08 80 71 0.80 81 10 0.11 82 1 0.01 ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24 Consensus pattern (80 bp): GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA GTCACTTAGCACAAA Found at i:44953942 original size:40 final size:40 Alignment explanation
Indices: 44953799--44953982 Score: 196 Period size: 40 Copynumber: 4.6 Consensus size: 40 44953789 TAACTCATTC * * 44953799 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG 1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA * * 44953839 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA 1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA * 44953879 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA 1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA * ** * * * 44953919 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA 1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA * 44953960 AA-GCCTTCGGGACTTAGCCCGGA 1 AATGCCTTCGGGACTTAACCCGGA 44953983 CAGCATTCAA Statistics Matches: 122, Mismatches: 16, Indels: 11 0.82 0.11 0.07 Matches are distributed among these distances: 39 8 0.07 40 103 0.84 41 11 0.09 ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24 Consensus pattern (40 bp): AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA Found at i:44961660 original size:39 final size:41 Alignment explanation
Indices: 44961591--44961727 Score: 115 Period size: 39 Copynumber: 3.5 Consensus size: 41 44961581 CGTTCAAGTT * * * ** 44961591 CCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATG 1 CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAATG * * 44961630 CCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACGAATG 1 CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAATG * * * * * * 44961670 CCTTC-GGACTTAACCCGGAAT-TAGTATCTCGCACAAAGG 1 CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAATG 44961709 CCTTC-GGACTTAACCCGGA 1 CCTTCGGGACTTAACCCGGA 44961728 ATAATAACTC Statistics Matches: 83, Mismatches: 12, Indels: 6 0.82 0.12 0.06 Matches are distributed among these distances: 38 2 0.02 39 68 0.82 40 13 0.16 ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25 Consensus pattern (41 bp): CCTTCGGGACTTAACCCGGATTATAGAAACTCACACGAATG Found at i:44961695 original size:78 final size:79 Alignment explanation
Indices: 44961605--44961807 Score: 209 Period size: 78 Copynumber: 2.6 Consensus size: 79 44961595 CGGGACATAG * ** * * * 44961605 CCCGGTTA-TAGTAACTCATTCAATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAA 1 CCCGGATATTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA--ATAATAACTCGCACAAA * 44961668 TGCCTTCGGA-CTTAA 64 TACCTTCGGATCTTAA * * 44961683 CCCGGA-ATTAGTATCTCGCACAAAGGCCTTC-GGACTTAACCCGGAATAATAACTCGCACAAAT 1 CCCGGATATTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGGAATAATAACTCGCACAAAT * 44961746 ACCTTCGGATCTTAG 65 ACCTTCGGATCTTAA * * * * 44961761 TCCGGATATTAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA 1 CCCGGATATTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCGGA 44961808 CAGCATTCAA Statistics Matches: 102, Mismatches: 16, Indels: 12 0.78 0.12 0.09 Matches are distributed among these distances: 76 3 0.03 77 21 0.21 78 39 0.38 79 20 0.20 80 19 0.19 ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25 Consensus pattern (79 bp): CCCGGATATTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATAATAACTCGCACAAATA CCTTCGGATCTTAA Found at i:44961714 original size:79 final size:80 Alignment explanation
Indices: 44961629--44961807 Score: 217 Period size: 78 Copynumber: 2.3 Consensus size: 80 44961619 CTCATTCAAT * * * 44961629 GCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATGCCTTCGGA-CTTAACCCGGA-AT 1 GCCTTCGGGACTTAACCCGGA--ATAATAACTCGCACAAATACCTTCGGATCTTAACCCGGATAT * 44961691 TAGT-A-TCTCGCACAAA 64 TAGTCACT-TAGCACAAA ** 44961707 GGCCTTC-GGACTTAACCCGGAATAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATATT 1 -GCCTTCGGGACTTAACCCGGAATAATAACTCGCACAAATACCTTCGGATCTTAACCCGGATATT 44961771 AGTCACTTAGCACAAA 65 AGTCACTTAGCACAAA * 44961787 GCCTTCGGGACTTAGCCCGGA 1 GCCTTCGGGACTTAACCCGGA 44961808 CAGCATTCAA Statistics Matches: 87, Mismatches: 7, Indels: 11 0.83 0.07 0.10 Matches are distributed among these distances: 76 3 0.03 77 20 0.23 78 23 0.26 79 18 0.21 80 22 0.25 81 1 0.01 ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24 Consensus pattern (80 bp): GCCTTCGGGACTTAACCCGGAATAATAACTCGCACAAATACCTTCGGATCTTAACCCGGATATTA GTCACTTAGCACAAA Found at i:44961728 original size:39 final size:40 Alignment explanation
Indices: 44961626--44961807 Score: 185 Period size: 39 Copynumber: 4.6 Consensus size: 40 44961616 TAACTCATTC * * * 44961626 AATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACG 1 AATGCCTTC-GGACTTAACCCGGATATTAGTAACTCGCACA * 44961666 AATGCCTTCGGACTTAACCCGGA-ATTAGTATCTCGCACA 1 AATGCCTTCGGACTTAACCCGGATATTAGTAACTCGCACA * * 44961705 AAGGCCTTCGGACTTAACCCGGA-A-TAATAACTCGCACA 1 AATGCCTTCGGACTTAACCCGGATATTAGTAACTCGCACA * ** * * 44961743 AATACCTTCGGATCTTAGTCCGGATATTAGTCACTTAGCACA 1 AATGCCTTCGGA-CTTAACCCGGATATTAGTAAC-TCGCACA * 44961785 AA-GCCTTCGGGACTTAGCCCGGA 1 AATGCCTTC-GGACTTAACCCGGA 44961808 CAGCATTCAA Statistics Matches: 120, Mismatches: 16, Indels: 11 0.82 0.11 0.07 Matches are distributed among these distances: 38 25 0.21 39 54 0.45 40 10 0.08 41 20 0.17 42 11 0.09 ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24 Consensus pattern (40 bp): AATGCCTTCGGACTTAACCCGGATATTAGTAACTCGCACA Found at i:44965684 original size:16 final size:16 Alignment explanation
Indices: 44965663--44965697 Score: 52 Period size: 16 Copynumber: 2.2 Consensus size: 16 44965653 CGAAATGCCA * 44965663 AAATGCCAAAAAGCTG 1 AAATGCCAAAAAGCAG * 44965679 AAATGCCGAAAAGCAG 1 AAATGCCAAAAAGCAG 44965695 AAA 1 AAA 44965698 GTTTGGCTAC Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 16 17 1.00 ACGTcount: A:0.54, C:0.17, G:0.20, T:0.09 Consensus pattern (16 bp): AAATGCCAAAAAGCAG Found at i:44965954 original size:29 final size:29 Alignment explanation
Indices: 44965921--44966022 Score: 109 Period size: 29 Copynumber: 3.6 Consensus size: 29 44965911 TGAATGTGAC * * * 44965921 TGGGCCTAACGGGCTATATAAATTTGATT 1 TGGGCCTAATGGGCCATATAAATATGATT * * * 44965950 TGGGCCTAATAGGCCATATACAA-GTGGTT 1 TGGGCCTAATGGGCCATATA-AATATGATT * 44965979 TGGGCCTAATGGGCCATATGAATATGA-T 1 TGGGCCTAATGGGCCATATAAATATGATT * 44966007 TGGGCTTAATGGGCCA 1 TGGGCCTAATGGGCCA 44966023 CATACAGGTA Statistics Matches: 61, Mismatches: 10, Indels: 5 0.80 0.13 0.07 Matches are distributed among these distances: 28 18 0.30 29 41 0.67 30 2 0.03 ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29 Consensus pattern (29 bp): TGGGCCTAATGGGCCATATAAATATGATT Found at i:44966017 original size:28 final size:28 Alignment explanation
Indices: 44965908--44966022 Score: 99 Period size: 29 Copynumber: 4.0 Consensus size: 28 44965898 GTGAGCATGA * * * * 44965908 ATATGAATGTGACTGGGCCTAACGGGCT 1 ATATGAATATGATTGGGCCTAATGGGCC * * * 44965936 ATATAAATTTGATTTGGGCCTAATAGGCC 1 ATATGAATATGA-TTGGGCCTAATGGGCC * 44965965 ATAT-ACA-AGTGGTTTGGGCCTAATGGGCC 1 ATATGA-ATA-T-GATTGGGCCTAATGGGCC * 44965994 ATATGAATATGATTGGGCTTAATGGGCC 1 ATATGAATATGATTGGGCCTAATGGGCC 44966022 A 1 A 44966023 CATACAGGTA Statistics Matches: 70, Mismatches: 11, Indels: 12 0.75 0.12 0.13 Matches are distributed among these distances: 28 28 0.40 29 39 0.56 30 3 0.04 ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30 Consensus pattern (28 bp): ATATGAATATGATTGGGCCTAATGGGCC Found at i:44975628 original size:46 final size:46 Alignment explanation
Indices: 44975575--44975750 Score: 187 Period size: 46 Copynumber: 3.8 Consensus size: 46 44975565 TGGTTGAGCA * 44975575 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG * * * * * 44975621 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG * * 44975668 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG * * * * 44975714 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 44975751 GCGGGTTACA Statistics Matches: 106, Mismatches: 17, Indels: 14 0.77 0.12 0.10 Matches are distributed among these distances: 43 6 0.06 45 3 0.03 46 61 0.58 47 28 0.26 48 3 0.03 50 5 0.05 ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG Found at i:44975731 original size:93 final size:93 Alignment explanation
Indices: 44975572--44975743 Score: 281 Period size: 93 Copynumber: 1.8 Consensus size: 93 44975562 GGATGGTTGA * * * * 44975572 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT 44975637 TGAGTCCGAGTTCGTGAGATGTAACTAG 66 TGAGTCCGAGTTCGTGAGATGTAACTAG * * 44975665 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT * 44975730 TGAGTCTGAGTTCG 66 TGAGTCCGAGTTCG 44975744 CTTATGGGCG Statistics Matches: 72, Mismatches: 7, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 93 72 1.00 ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28 Consensus pattern (93 bp): GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT TGAGTCCGAGTTCGTGAGATGTAACTAG Found at i:44980215 original size:28 final size:28 Alignment explanation
Indices: 44980135--44980220 Score: 109 Period size: 28 Copynumber: 3.0 Consensus size: 28 44980125 GTGAGCATGA * 44980135 ATATGAATATGAATGGGCCTAACGGGCC 1 ATATGAATATGAATGGGCCTAATGGGCC * * * * 44980163 ATATAAATGTGATTTGGGCCAAATGGGCC 1 ATATGAATATGA-ATGGGCCTAATGGGCC * 44980192 ATATGAATATGAATGGGCTTAATGGGCC 1 ATATGAATATGAATGGGCCTAATGGGCC 44980220 A 1 A 44980221 GATACAGGTA Statistics Matches: 47, Mismatches: 10, Indels: 2 0.80 0.17 0.03 Matches are distributed among these distances: 28 24 0.51 29 23 0.49 ACGTcount: A:0.33, C:0.14, G:0.28, T:0.26 Consensus pattern (28 bp): ATATGAATATGAATGGGCCTAATGGGCC Found at i:44985019 original size:29 final size:29 Alignment explanation
Indices: 44984980--44985054 Score: 87 Period size: 29 Copynumber: 2.6 Consensus size: 29 44984970 ATCATATTCA * * * * 44984980 ATGGCCTATTAGACCCAAACCTCCTGTAT 1 ATGGCCCATTAGGCCCAAACCACATGTAT * * * 44985009 ATGGCCCATTAGGTCCAAATCACATTTAT 1 ATGGCCCATTAGGCCCAAACCACATGTAT 44985038 ATGGCCCATTAGGCCCA 1 ATGGCCCATTAGGCCCA 44985055 GTCACATTCA Statistics Matches: 38, Mismatches: 8, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 29 38 1.00 ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27 Consensus pattern (29 bp): ATGGCCCATTAGGCCCAAACCACATGTAT Found at i:44990802 original size:34 final size:34 Alignment explanation
Indices: 44990750--44990817 Score: 100 Period size: 34 Copynumber: 2.0 Consensus size: 34 44990740 AGATGCAGTT * * 44990750 TGGGCCTGAGCCCGTTACAGTATCAGTATCAATG 1 TGGGCCTGAGCCCATTACAGTAACAGTATCAATG * * 44990784 TGGGCCTTAGCCTATTACAGTAACAGTATCAATG 1 TGGGCCTGAGCCCATTACAGTAACAGTATCAATG 44990818 CAGTAATGCA Statistics Matches: 30, Mismatches: 4, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 34 30 1.00 ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28 Consensus pattern (34 bp): TGGGCCTGAGCCCATTACAGTAACAGTATCAATG Found at i:44991237 original size:27 final size:27 Alignment explanation
Indices: 44991190--44991274 Score: 125 Period size: 27 Copynumber: 3.1 Consensus size: 27 44991180 CTCAAATACA * 44991190 GTCATTTTACCTTATAAGGGTATTTCG 1 GTCATTTTACCCTATAAGGGTATTTCG * * * * 44991217 TTCATTTTACCCTGTAGGGGTATTCCG 1 GTCATTTTACCCTATAAGGGTATTTCG 44991244 GTCATTTTACCCTATAAGGGTATTTCG 1 GTCATTTTACCCTATAAGGGTATTTCG 44991271 GTCA 1 GTCA 44991275 CCATTTTGGC Statistics Matches: 49, Mismatches: 9, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 27 49 1.00 ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41 Consensus pattern (27 bp): GTCATTTTACCCTATAAGGGTATTTCG Found at i:45010385 original size:30 final size:30 Alignment explanation
Indices: 45010349--45010430 Score: 92 Period size: 30 Copynumber: 2.7 Consensus size: 30 45010339 TATGATATTG * * 45010349 TATCTTGGATTTCTGTATCTTGGATTTCTT 1 TATCTTGGATTTCTGTATCTTAGACTTCTT * * * 45010379 TATCTTGGATTTCTTTCTCCTAGACTTCTT 1 TATCTTGGATTTCTGTATCTTAGACTTCTT * 45010409 TATCTTGGTTTTCATGTCATCT 1 TATCTTGGATTTC-TGT-ATCT 45010431 CTATTCCGTA Statistics Matches: 41, Mismatches: 9, Indels: 2 0.79 0.17 0.04 Matches are distributed among these distances: 30 37 0.90 31 2 0.05 32 2 0.05 ACGTcount: A:0.13, C:0.18, G:0.13, T:0.55 Consensus pattern (30 bp): TATCTTGGATTTCTGTATCTTAGACTTCTT Found at i:45010393 original size:15 final size:15 Alignment explanation
Indices: 45010349--45010421 Score: 92 Period size: 15 Copynumber: 4.9 Consensus size: 15 45010339 TATGATATTG * 45010349 TATCTTGGATTTCTG 1 TATCTTGGATTTCTT 45010364 TATCTTGGATTTCTT 1 TATCTTGGATTTCTT 45010379 TATCTTGGATTTCTT 1 TATCTTGGATTTCTT * * * * 45010394 TCTCCTAGACTTCTT 1 TATCTTGGATTTCTT * 45010409 TATCTTGGTTTTC 1 TATCTTGGATTTC 45010422 ATGTCATCTC Statistics Matches: 48, Mismatches: 10, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 15 48 1.00 ACGTcount: A:0.12, C:0.18, G:0.14, T:0.56 Consensus pattern (15 bp): TATCTTGGATTTCTT Found at i:45015524 original size:19 final size:18 Alignment explanation
Indices: 45015500--45015539 Score: 53 Period size: 19 Copynumber: 2.2 Consensus size: 18 45015490 CGGGCTGAGG * 45015500 ACACAGACGTGTTTGAGCC 1 ACACAGACGTGTGTGA-CC * 45015519 ACACAGGCGTGTGTGACC 1 ACACAGACGTGTGTGACC 45015537 ACA 1 ACA 45015540 TGGCCTACCC Statistics Matches: 19, Mismatches: 2, Indels: 1 0.86 0.09 0.05 Matches are distributed among these distances: 18 5 0.26 19 14 0.74 ACGTcount: A:0.28, C:0.28, G:0.28, T:0.17 Consensus pattern (18 bp): ACACAGACGTGTGTGACC Found at i:45017877 original size:15 final size:16 Alignment explanation
Indices: 45017854--45017886 Score: 50 Period size: 15 Copynumber: 2.1 Consensus size: 16 45017844 TGATCATTAC * 45017854 TTCTTCTTC-TTCTCT 1 TTCTACTTCTTTCTCT 45017869 TTCTACTTCTTTCTCT 1 TTCTACTTCTTTCTCT 45017885 TT 1 TT 45017887 TCTTTGGAGT Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 15 8 0.50 16 8 0.50 ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67 Consensus pattern (16 bp): TTCTACTTCTTTCTCT Found at i:45023475 original size:19 final size:20 Alignment explanation
Indices: 45023438--45023475 Score: 51 Period size: 19 Copynumber: 1.9 Consensus size: 20 45023428 AGGCCTCTTT * 45023438 GGATTCTATTTTTAATTTGG 1 GGATTCTATGTTTAATTTGG * 45023458 GGATT-TATGTTTATTTTG 1 GGATTCTATGTTTAATTTG 45023476 CTTTAATACT Statistics Matches: 16, Mismatches: 2, Indels: 1 0.84 0.11 0.05 Matches are distributed among these distances: 19 11 0.69 20 5 0.31 ACGTcount: A:0.18, C:0.03, G:0.21, T:0.58 Consensus pattern (20 bp): GGATTCTATGTTTAATTTGG Found at i:45027182 original size:49 final size:48 Alignment explanation
Indices: 45027110--45027297 Score: 234 Period size: 49 Copynumber: 3.8 Consensus size: 48 45027100 TGAGGTCACG * 45027110 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCA 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GTCGCA * * * * * 45027159 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTG-CGATCA 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGTCG--CA * 45027208 TGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA 1 TGTG--TAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GTCGCA * * 45027259 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA 45027298 GCTTTGGCTA Statistics Matches: 119, Mismatches: 14, Indels: 12 0.82 0.10 0.08 Matches are distributed among these distances: 47 2 0.02 48 1 0.01 49 75 0.63 51 38 0.32 52 1 0.01 53 2 0.02 ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29 Consensus pattern (48 bp): TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGTCGCA Found at i:45027287 original size:100 final size:100 Alignment explanation
Indices: 45027109--45027292 Score: 332 Period size: 100 Copynumber: 1.8 Consensus size: 100 45027099 GTGAGGTCAC * 45027109 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCATGTGTAGTACTAAGT 1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACTAAGT 45027174 GCAGGCTACTATGCGTACCCGAAAACTGCGATCAT 66 GCAGGCTACTATGCGTACCCGAAAACTGCGATCAT * * * 45027209 GTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACTAAGT 1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACTAAGT 45027274 GCAGGCTACTATGCGTACC 66 GCAGGCTACTATGCGTACC 45027293 AGATAGCTTT Statistics Matches: 80, Mismatches: 4, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 100 80 1.00 ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29 Consensus pattern (100 bp): GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACTAAGT GCAGGCTACTATGCGTACCCGAAAACTGCGATCAT Found at i:45031096 original size:27 final size:27 Alignment explanation
Indices: 45031074--45031238 Score: 176 Period size: 27 Copynumber: 6.1 Consensus size: 27 45031064 AGTACCCTTA * 45031074 ATTTATAGAATTATCGTTTTACCCTCG 1 ATTTATAGAATTATCATTTTACCCTCG * * 45031101 ATTTACAAAATTAT-AGTTTTACCCTCG 1 ATTTATAGAATTATCA-TTTTACCCTCG * * 45031128 ATTTATAGAATTA-CTATTTTAACCTCC 1 ATTTATAGAATTATC-ATTTTACCCTCG * * 45031155 ATTTATAGAATTA-CTGTTTTACCC-CTA 1 ATTTATAGAATTATC-ATTTTACCCTC-G * * 45031182 ATTTACAAAATTATCATTTTACCCTCG 1 ATTTATAGAATTATCATTTTACCCTCG * 45031209 ATTTATAGAATTACCATTTTACCCTCG 1 ATTTATAGAATTATCATTTTACCCTCG 45031236 ATT 1 ATT 45031239 GTGAAATTAC Statistics Matches: 115, Mismatches: 17, Indels: 12 0.80 0.12 0.08 Matches are distributed among these distances: 26 1 0.01 27 111 0.97 28 3 0.03 ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43 Consensus pattern (27 bp): ATTTATAGAATTATCATTTTACCCTCG Found at i:45031132 original size:54 final size:55 Alignment explanation
Indices: 45031074--45031238 Score: 196 Period size: 54 Copynumber: 3.1 Consensus size: 55 45031064 AGTACCCTTA * * * 45031074 ATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTA-TAGTTTTACCCTCG 1 ATTTATAGAATTATCATTTTACCCTCGATTTATAGAATTACTAGTTTTACCCTCG * * * 45031128 ATTTATAGAATTA-CTATTTTAACCTCCATTTATAGAATTACT-GTTTTACCC-CTA 1 ATTTATAGAATTATC-ATTTTACCCTCGATTTATAGAATTACTAGTTTTACCCTC-G * * * 45031182 ATTTACAAAATTATCATTTTACCCTCGATTTATAGAATTACCA-TTTTACCCTCG 1 ATTTATAGAATTATCATTTTACCCTCGATTTATAGAATTACTAGTTTTACCCTCG 45031236 ATT 1 ATT 45031239 GTGAAATTAC Statistics Matches: 93, Mismatches: 12, Indels: 12 0.79 0.10 0.10 Matches are distributed among these distances: 53 2 0.02 54 88 0.95 55 3 0.03 ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43 Consensus pattern (55 bp): ATTTATAGAATTATCATTTTACCCTCGATTTATAGAATTACTAGTTTTACCCTCG Found at i:45031209 original size:81 final size:81 Alignment explanation
Indices: 45031074--45031234 Score: 247 Period size: 81 Copynumber: 2.0 Consensus size: 81 45031064 AGTACCCTTA * 45031074 ATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTATAGTTTTACCCTCGATTTATAGAAT 1 ATTTATAGAATTATCGTTTTACCCTCAATTTACAAAATTATAGTTTTACCCTCGATTTATAGAAT * 45031139 TACTATTTTAACCTCC 66 TACCATTTTAACCTCC 45031155 ATTTATAGAATTA-CTGTTTTACCC-CTAATTTACAAAATTATCA-TTTTACCCTCGATTTATAG 1 ATTTATAGAATTATC-GTTTTACCCTC-AATTTACAAAATTAT-AGTTTTACCCTCGATTTATAG * 45031217 AATTACCATTTTACCCTC 63 AATTACCATTTTAACCTC 45031235 GATTGTGAAA Statistics Matches: 74, Mismatches: 3, Indels: 6 0.89 0.04 0.07 Matches are distributed among these distances: 80 2 0.03 81 71 0.96 82 1 0.01 ACGTcount: A:0.31, C:0.20, G:0.06, T:0.43 Consensus pattern (81 bp): ATTTATAGAATTATCGTTTTACCCTCAATTTACAAAATTATAGTTTTACCCTCGATTTATAGAAT TACCATTTTAACCTCC Found at i:45031260 original size:27 final size:27 Alignment explanation
Indices: 45031230--45031368 Score: 104 Period size: 27 Copynumber: 5.1 Consensus size: 27 45031220 TACCATTTTA ** 45031230 CCCTCGATTGTGAAATTACTGAAATAC 1 CCCTCGATTGTGAAATTACCAAAATAC * * 45031257 CCCT--ATAGGGTAGAATTACCAAAATAC 1 CCCTCGATTGTG-A-AATTACCAAAATAC * * * 45031284 CCCTAGTTTGTAAAATTACCAAAATAC 1 CCCTCGATTGTGAAATTACCAAAATAC ** * * * 45031311 CATTGGTTTGTGAAATTACCGAAATA- 1 CCCTCGATTGTGAAATTACCAAAATAC * * 45031337 CCCTCAATTTGTAAAATTACCAAAATAC 1 CCCTCGA-TTGTGAAATTACCAAAATAC 45031365 CCCT 1 CCCT 45031369 AATTTACAAA Statistics Matches: 86, Mismatches: 20, Indels: 11 0.74 0.17 0.09 Matches are distributed among these distances: 25 4 0.05 26 3 0.03 27 72 0.84 28 5 0.06 29 2 0.02 ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29 Consensus pattern (27 bp): CCCTCGATTGTGAAATTACCAAAATAC Found at i:45031355 original size:81 final size:81 Alignment explanation
Indices: 45031237--45031396 Score: 216 Period size: 81 Copynumber: 2.0 Consensus size: 81 45031227 TTACCCTCGA * * * * ** 45031237 TTGTGAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTAGTTTGTAAAATTA 1 TTGTGAAATTACCGAAATACCCCAATAGGGTAAAATTACCAAAATACCCCTAATTTACAAAATTA 45031302 CCA-AAATACCATTGGT 66 -CATAAATACCATTGGT ** 45031318 TTGTGAAATTACCGAAATACCCTCAAT-TTGTAAAATTACCAAAATACCCCTAATTTACAAAATT 1 TTGTGAAATTACCGAAATACCC-CAATAGGGTAAAATTACCAAAATACCCCTAATTTACAAAATT 45031382 ACATAAATACCATTG 65 ACATAAATACCATTG 45031397 ACCTTCTAAA Statistics Matches: 69, Mismatches: 8, Indels: 4 0.85 0.10 0.05 Matches are distributed among these distances: 80 2 0.03 81 64 0.93 82 3 0.04 ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30 Consensus pattern (81 bp): TTGTGAAATTACCGAAATACCCCAATAGGGTAAAATTACCAAAATACCCCTAATTTACAAAATTA CATAAATACCATTGGT Found at i:45031372 original size:27 final size:27 Alignment explanation
Indices: 45031270--45031392 Score: 133 Period size: 27 Copynumber: 4.6 Consensus size: 27 45031260 TATAGGGTAG * 45031270 AATTACCAAAATACCCCTAGTTTGTAA 1 AATTACCAAAATACCCCTAATTTGTAA ** ** * 45031297 AATTACCAAAATACCATTGGTTTGTGA 1 AATTACCAAAATACCCCTAATTTGTAA * 45031324 AATTACCGAAATA-CCCTCAATTTGTAA 1 AATTACCAAAATACCCCT-AATTTGTAA ** 45031351 AATTACCAAAATACCCCTAATTTACAA 1 AATTACCAAAATACCCCTAATTTGTAA 45031378 AATTA-CATAAATACC 1 AATTACCA-AAATACC 45031393 ATTGACCTTC Statistics Matches: 80, Mismatches: 13, Indels: 6 0.81 0.13 0.06 Matches are distributed among these distances: 26 4 0.05 27 72 0.90 28 4 0.05 ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29 Consensus pattern (27 bp): AATTACCAAAATACCCCTAATTTGTAA Found at i:45031444 original size:27 final size:27 Alignment explanation
Indices: 45031371--45031456 Score: 88 Period size: 27 Copynumber: 3.1 Consensus size: 27 45031361 ATACCCCTAA * 45031371 TTTACAAAATTACAT-AAATACCATTGACC 1 TTTACAAAATTAC-TGAAATACCATTG--G 45031400 TTCTA-AAAATTA-TAGAAATACCATTGG 1 TT-TACAAAATTACT-GAAATACCATTGG * 45031427 TTTACAAAATTACTGAAATACCCTTGG 1 TTTACAAAATTACTGAAATACCATTGG 45031454 TTT 1 TTT 45031457 GTAGATTTAC Statistics Matches: 50, Mismatches: 2, Indels: 12 0.78 0.03 0.19 Matches are distributed among these distances: 26 2 0.04 27 25 0.50 28 1 0.02 29 20 0.40 30 2 0.04 ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35 Consensus pattern (27 bp): TTTACAAAATTACTGAAATACCATTGG Found at i:45031540 original size:27 final size:27 Alignment explanation
Indices: 45031497--45031570 Score: 71 Period size: 27 Copynumber: 2.7 Consensus size: 27 45031487 AAATGACTAA * 45031497 AATACCCCTAATA-GGTAAAAAGACCGT 1 AATACCCCT-GTAGGGTAAAAAGACCGT ** 45031524 AA-AGCCCCTGTAGGGTAAAGTGACCGT 1 AATA-CCCCTGTAGGGTAAAAAGACCGT * * 45031551 AATACCCTTGTATGGTAAAA 1 AATACCCCTGTAGGGTAAAA 45031571 TGACGAATAC Statistics Matches: 38, Mismatches: 6, Indels: 6 0.76 0.12 0.12 Matches are distributed among these distances: 26 3 0.08 27 34 0.89 28 1 0.03 ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22 Consensus pattern (27 bp): AATACCCCTGTAGGGTAAAAAGACCGT Found at i:45031574 original size:27 final size:27 Alignment explanation
Indices: 45031510--45031574 Score: 78 Period size: 27 Copynumber: 2.4 Consensus size: 27 45031500 ACCCCTAATA * 45031510 GGTAAAAAGACCGTAAAGCCCCTGTAG 1 GGTAAAATGACCGTAAAGCCCCTGTAG * * * 45031537 GGTAAAGTGACCGTAATA-CCCTTGTAT 1 GGTAAAATGACCGTAA-AGCCCCTGTAG 45031564 GGTAAAATGAC 1 GGTAAAATGAC 45031575 GAATACGCCC Statistics Matches: 32, Mismatches: 5, Indels: 2 0.82 0.13 0.05 Matches are distributed among these distances: 27 31 0.97 28 1 0.03 ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22 Consensus pattern (27 bp): GGTAAAATGACCGTAAAGCCCCTGTAG Found at i:45032765 original size:25 final size:25 Alignment explanation
Indices: 45032736--45032783 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 45032726 TTATAAAATG * * * 45032736 AAAATGACCGTTTTGCCCCTAGGTA 1 AAAATGACCATTATACCCCTAGGTA 45032761 AAAATGACCATTATACCCCTAGG 1 AAAATGACCATTATACCCCTAGG 45032784 GTTTAAATAT Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25 Consensus pattern (25 bp): AAAATGACCATTATACCCCTAGGTA Found at i:45032867 original size:11 final size:11 Alignment explanation
Indices: 45032831--45032888 Score: 61 Period size: 11 Copynumber: 5.6 Consensus size: 11 45032821 CATGGTATGT 45032831 ATGATATGCAC 1 ATGATATGCAC * * 45032842 ATGACATG--T 1 ATGATATGCAC 45032851 ATGATATGCAC 1 ATGATATGCAC * 45032862 ATGATATG--T 1 ATGATATGCAC 45032871 ATGATATGCAC 1 ATGATATGCAC 45032882 ATGATAT 1 ATGATAT 45032889 ATTCATAAAT Statistics Matches: 37, Mismatches: 6, Indels: 8 0.73 0.12 0.16 Matches are distributed among these distances: 9 15 0.41 11 22 0.59 ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33 Consensus pattern (11 bp): ATGATATGCAC Found at i:45032886 original size:20 final size:20 Alignment explanation
Indices: 45032820--45032888 Score: 120 Period size: 20 Copynumber: 3.5 Consensus size: 20 45032810 ATTTTGATAA * 45032820 ACATGGTATGTATGATATGC 1 ACATGATATGTATGATATGC * 45032840 ACATGACATGTATGATATGC 1 ACATGATATGTATGATATGC 45032860 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC 45032880 ACATGATAT 1 ACATGATAT 45032889 ATTCATAAAT Statistics Matches: 46, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 20 46 1.00 ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33 Consensus pattern (20 bp): ACATGATATGTATGATATGC Found at i:45033222 original size:25 final size:24 Alignment explanation
Indices: 45032940--45033226 Score: 414 Period size: 24 Copynumber: 11.8 Consensus size: 24 45032930 AAGTGTAAAT 45032940 GGCTTATGCCCCAGTTATTAAAAAG 1 GGCTTATGCCCCAGTTATT-AAAAG * * * 45032965 GGCTTACGCCCCGGTTATCAAAAG 1 GGCTTATGCCCCAGTTATTAAAAG * 45032989 GGCTTACGCCCCAGTTATTAAAAG 1 GGCTTATGCCCCAGTTATTAAAAG * * 45033013 GGCTTATGCCTCAGTTATCAAAAG 1 GGCTTATGCCCCAGTTATTAAAAG 45033037 GGCTTATGCCCCAGTTATTAAAAAG 1 GGCTTATGCCCCAGTTATT-AAAAG * * 45033062 GGCTTACGCCTCAGTTATTAAAAAG 1 GGCTTATGCCCCAGTTATT-AAAAG 45033087 GGCTTATGCCCCAGTTATTAAAAAG 1 GGCTTATGCCCCAGTTATT-AAAAG * 45033112 GGCTTATGCCCCAGTTATCAAAAG 1 GGCTTATGCCCCAGTTATTAAAAG 45033136 GGCTTATGCCCCAGTTATTAAAAG 1 GGCTTATGCCCCAGTTATTAAAAG 45033160 GGCTTATGCCCCAGTTATTAAAAG 1 GGCTTATGCCCCAGTTATTAAAAG * 45033184 GGCTTTTGCCCCAGTTATTAAAAG 1 GGCTTATGCCCCAGTTATTAAAAG * 45033208 AGGC-TAGGCCTCCAGTTAT 1 -GGCTTATGCC-CCAGTTAT 45033227 ATGATAAAGC Statistics Matches: 240, Mismatches: 19, Indels: 6 0.91 0.07 0.02 Matches are distributed among these distances: 24 144 0.60 25 96 0.40 ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28 Consensus pattern (24 bp): GGCTTATGCCCCAGTTATTAAAAG Found at i:45033226 original size:147 final size:147 Alignment explanation
Indices: 45032940--45033206 Score: 480 Period size: 147 Copynumber: 1.8 Consensus size: 147 45032930 AAGTGTAAAT * 45032940 GGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCGGTTATCAAAAGGGCTTACGCCCCAGTT 1 GGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTT * 45033005 ATTAAAAGGGCTTATGCCTCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTACG 66 ATTAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTACG 45033070 CCTCAGTTATTAAAAAG 131 CCTCAGTTATTAAAAAG * * 45033087 GGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTT 1 GGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTT * * 45033152 ATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATTAAAA 66 ATTAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAA 45033207 GAGGCTAGGC Statistics Matches: 114, Mismatches: 6, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 147 114 1.00 ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28 Consensus pattern (147 bp): GGCTTATGCCCCAGTTATTAAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTT ATTAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTACG CCTCAGTTATTAAAAAG Done.