Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 141 of 343
Found at i:46801033 original size:27 final size:27
Alignment explanation
Indices: 46800977--46801100 Score: 162
Period size: 27 Copynumber: 4.6 Consensus size: 27
46800967 ACAAATTAGA
* * *
46800977 GGTATTTTGGTAATTTTAC-AAACTAGG
1 GGTATTTTGGTAATTTTGCTAATCGA-G
46801004 GGTATTTTGGTAATTTTGCTAATCGAG
1 GGTATTTTGGTAATTTTGCTAATCGAG
**
46801031 GGTATTTTTTTAATTTTTG-TAATCGAG
1 GGTATTTTGGTAA-TTTTGCTAATCGAG
*
46801058 GGTATTTTGGTAATTTTGTTAATCGAG
1 GGTATTTTGGTAATTTTGCTAATCGAG
46801085 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
46801101 GATAAACTAA
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
26 5 0.06
27 73 0.84
28 9 0.10
ACGTcount: A:0.23, C:0.05, G:0.23, T:0.48
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTGCTAATCGAG
Found at i:46801035 original size:54 final size:54
Alignment explanation
Indices: 46800946--46801109 Score: 170
Period size: 54 Copynumber: 3.0 Consensus size: 54
46800936 TTCTACCTTA
** * * *
46800946 TAGGGGTATTTCAGTAATTTTACAAAT-TAGAGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTGCTAATCGAG-GGTATTTTGGTAATTTTACAAAC
** ***
46801000 TAGGGGTATTTTGGTAATTTTGCTAATCGAGGGTATTTTTTTAATTTTTGTAA-
1 TAGGGGTATTTTGGTAATTTTGCTAATCGAGGGTATTTTGGTAATTTTACAAAC
* * * *
46801053 TCGAGGGTATTTTGGTAATTTTGTTAATCGAGGGTATTTTGGTAATTTGATAAAC
1 TAG-GGGTATTTTGGTAATTTTGCTAATCGAGGGTATTTTGGTAATTTTACAAAC
46801108 TA
1 TA
46801110 AAGTAGTCTA
Statistics
Matches: 88, Mismatches: 19, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
53 2 0.02
54 83 0.94
55 3 0.03
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.45
Consensus pattern (54 bp):
TAGGGGTATTTTGGTAATTTTGCTAATCGAGGGTATTTTGGTAATTTTACAAAC
Found at i:46809496 original size:5 final size:5
Alignment explanation
Indices: 46809486--46809518 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
46809476 GAATACCTTG
46809486 TCTTC TCTTC TCTTC TCTTC TCTTC TCTTC TCT
1 TCTTC TCTTC TCTTC TCTTC TCTTC TCTTC TCT
46809519 CTTTCAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (5 bp):
TCTTC
Found at i:46817112 original size:30 final size:30
Alignment explanation
Indices: 46817078--46817175 Score: 76
Period size: 30 Copynumber: 3.3 Consensus size: 30
46817068 TAAACTAAAA
46817078 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
46817108 TGAGCTGAGGC-TAAACTCCT-AGGCTGAGGT
1 TGAGCT-AAGCTTTAGCTCGTGA-GCTAAAGT
* *
46817138 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
46817168 TGAGCTAA
1 TGAGCTAA
46817176 AAGTGAGCTC
Statistics
Matches: 49, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
29 3 0.06
30 40 0.82
31 6 0.12
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:46819427 original size:30 final size:30
Alignment explanation
Indices: 46819372--46819438 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
46819362 CTCACTCGAT
*
46819372 TCTTTTTAACTCTCAAATTTCTTTTCGTTC
1 TCTTTTTAACTCTCAAATTTCTTTTCATTC
* *
46819402 TCTTTTTCAA-TCTC-ATTTTCTTTTTCATTT
1 TCTTTTT-AACTCTCAAATTTC-TTTTCATTC
46819432 TCTTTTT
1 TCTTTTT
46819439 GATTTTCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 5 0.16
30 25 0.78
31 2 0.06
ACGTcount: A:0.13, C:0.21, G:0.01, T:0.64
Consensus pattern (30 bp):
TCTTTTTAACTCTCAAATTTCTTTTCATTC
Found at i:46819429 original size:12 final size:12
Alignment explanation
Indices: 46819414--46819445 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
46819404 TTTTTCAATC
46819414 TCATTTTCTTTT
1 TCATTTTCTTTT
46819426 TCATTTTCTTTT
1 TCATTTTCTTTT
*
46819438 TGATTTTC
1 TCATTTTC
46819446 AAAGGCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.16, G:0.03, T:0.72
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:46819456 original size:12 final size:12
Alignment explanation
Indices: 46819441--46819471 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
46819431 TTCTTTTTGA
46819441 TTTTCAAAGGCT
1 TTTTCAAAGGCT
46819453 TTTTCAAAGGCT
1 TTTTCAAAGGCT
46819465 TTTTCAA
1 TTTTCAA
46819472 GTTCTTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:46819529 original size:5 final size:5
Alignment explanation
Indices: 46819519--46819575 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
46819509 TTCTTGCCTC
*
46819519 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
46819566 TCTTT TCTTT
1 TCTTT TCTTT
46819576 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:46819559 original size:15 final size:14
Alignment explanation
Indices: 46819519--46819575 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
46819509 TTCTTGCCTC
*
46819519 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
46819534 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
46819549 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
46819566 TCTTTTCTTT
1 TCTTTTCTTT
46819576 GTTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:46819576 original size:21 final size:21
Alignment explanation
Indices: 46819519--46819586 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
46819509 TTCTTGCCTC
* *
46819519 TCTTTTCTTTT-TATTTCATTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
46819540 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
46819561 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
46819581 CTCTTT
1 -TCTTT
46819587 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.18
21 27 0.69
22 5 0.13
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:46820517 original size:12 final size:12
Alignment explanation
Indices: 46820490--46820534 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
46820480 CCTCTCTTTC
46820490 TTTTTTTGTCGAAA
1 TTTTTTT-TCG-AA
46820504 TTTTTTTTCGAA
1 TTTTTTTTCGAA
46820516 TTTTTTTT-G-A
1 TTTTTTTTCGAA
46820526 TTTTTTTTC
1 TTTTTTTTC
46820535 TTATATACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
10 9 0.30
11 1 0.03
12 10 0.33
13 3 0.10
14 7 0.23
ACGTcount: A:0.13, C:0.07, G:0.09, T:0.71
Consensus pattern (12 bp):
TTTTTTTTCGAA
Found at i:46820522 original size:13 final size:13
Alignment explanation
Indices: 46820490--46820523 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
46820480 CCTCTCTTTC
*
46820490 TTTTTTTGTCGAA
1 TTTTTTTTTCGAA
*
46820503 ATTTTTTTTCGAA
1 TTTTTTTTTCGAA
46820516 TTTTTTTT
1 TTTTTTTT
46820524 GATTTTTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.15, C:0.06, G:0.09, T:0.71
Consensus pattern (13 bp):
TTTTTTTTTCGAA
Found at i:46821787 original size:17 final size:16
Alignment explanation
Indices: 46821728--46821787 Score: 50
Period size: 17 Copynumber: 3.6 Consensus size: 16
46821718 GAGACAGCCA
* *
46821728 CCATACATGCATTTAAG
1 CCATTCATGCATTT-AT
46821745 CCATTCATGCATTCTAT
1 CCATTCATGCATT-TAT
*
46821762 -CATCCCATGCATTTGAT
1 CCAT-TCATGCATTT-AT
46821779 CCATTCATG
1 CCATTCATG
46821788 GACTACACTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 4 0.11
17 27 0.77
18 4 0.11
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (16 bp):
CCATTCATGCATTTAT
Found at i:46827988 original size:36 final size:36
Alignment explanation
Indices: 46827941--46828015 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
46827931 ATCGAATGAG
*
46827941 GCTGATGTGTTTTAAAAACTTCAAAACTCATACCTT
1 GCTGATATGTTTTAAAAACTTCAAAACTCATACCTT
*
46827977 GCTGATATGTTTTAAAGACTTCAAAACTCATACCTT
1 GCTGATATGTTTTAAAAACTTCAAAACTCATACCTT
46828013 GCT
1 GCT
46828016 TACCTTTTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (36 bp):
GCTGATATGTTTTAAAAACTTCAAAACTCATACCTT
Found at i:46832048 original size:9 final size:9
Alignment explanation
Indices: 46832034--46832170 Score: 62
Period size: 9 Copynumber: 14.2 Consensus size: 9
46832024 ATCACATCTG
46832034 GGGGGGGGT
1 GGGGGGGGT
46832043 GGGGGGGGT
1 GGGGGGGGT
46832052 GGGGGGGGT
1 GGGGGGGGT
* *
46832061 GTGGGGTTGGC
1 G-GGGG-GGGT
46832072 GGGGGTTGGGT
1 GGGGG--GGGT
46832083 GGTTGGGGGGT
1 GG--GGGGGGT
** * *
46832094 TTGGGTGTT
1 GGGGGGGGT
46832103 GGGGTTGGGG-
1 GGGG--GGGGT
*
46832113 GGGGAGGGT
1 GGGGGGGGT
*
46832122 GGGTGGGGT
1 GGGGGGGGT
**
46832131 -GGTTGGGT
1 GGGGGGGGT
*
46832139 GGGGGTGGTT
1 GGGGG-GGGT
46832149 GGGGGGGGGTT
1 -GGGGGGGG-T
46832160 GGGGGGGGT
1 GGGGGGGGT
46832169 GG
1 GG
46832171 CACAAAAACA
Statistics
Matches: 96, Mismatches: 20, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
8 10 0.10
9 38 0.40
10 25 0.26
11 20 0.21
13 3 0.03
ACGTcount: A:0.01, C:0.01, G:0.76, T:0.23
Consensus pattern (9 bp):
GGGGGGGGT
Found at i:46832075 original size:20 final size:19
Alignment explanation
Indices: 46832033--46832076 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
46832023 CATCACATCT
*
46832033 GGGGGGGGGTGGGGGGGGT
1 GGGGGGGGGTGGGGGGGGC
**
46832052 GGGGGGGGTGTGGGGTTGGC
1 GGGGGGGG-GTGGGGGGGGC
46832072 GGGGG
1 GGGGG
46832077 TTGGGTGGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.00, C:0.02, G:0.84, T:0.14
Consensus pattern (19 bp):
GGGGGGGGGTGGGGGGGGC
Found at i:46832100 original size:39 final size:38
Alignment explanation
Indices: 46832033--46832156 Score: 117
Period size: 39 Copynumber: 3.2 Consensus size: 38
46832023 CATCACATCT
* **
46832033 GGGGGG-GGGTGGGGGGGGTGGGGGGGGTGTGGGGTTGG
1 GGGGGGAGGGTGGGTGGGGT-GGTTGGGTGTGGGGTTGG
** *
46832071 CGGGGGTTGGGTGGTTGGGG-GGTTTGGGTGTTGGGGTTGG
1 -GGGGGGAGGGTGGGTGGGGTGG-TTGGGTG-TGGGGTTGG
*
46832111 GGGGGGAGGGTGGGTGGGGTGGTTGGGTGGGGGTGGTTGG
1 GGGGGGAGGGTGGGTGGGGTGGTTGGGT-GTGG-GGTTGG
46832151 GGGGGG
1 GGGGGG
46832157 GTTGGGGGGG
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
38 2 0.03
39 34 0.49
40 34 0.49
ACGTcount: A:0.01, C:0.01, G:0.76, T:0.23
Consensus pattern (38 bp):
GGGGGGAGGGTGGGTGGGGTGGTTGGGTGTGGGGTTGG
Found at i:46832106 original size:40 final size:38
Alignment explanation
Indices: 46832039--46832155 Score: 110
Period size: 40 Copynumber: 2.9 Consensus size: 38
46832029 ATCTGGGGGG
* **
46832039 GGGTGGGGGGGGTGGGGGGGGTGTGGGGTTGGCGGGGGTT
1 GGGTGGGTGGGGT-GGTTGGGTGTGGGGTTGG-GGGGGTT
* **
46832079 GGGTGGTTGGGG-GGTTTGGGTGTTGGGGTTGGGGGGGGA
1 GGGTGGGTGGGGTGG-TTGGGTG-TGGGGTTGGGGGGGTT
*
46832118 GGGTGGGTGGGGTGGTTGGGTGGGGGTGGTTGGGGGGG
1 GGGTGGGTGGGGTGGTTGGGT-GTGG-GGTTGGGGGGG
46832156 GGTTGGGGGG
Statistics
Matches: 64, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
38 2 0.03
39 29 0.45
40 33 0.52
ACGTcount: A:0.01, C:0.01, G:0.74, T:0.24
Consensus pattern (38 bp):
GGGTGGGTGGGGTGGTTGGGTGTGGGGTTGGGGGGGTT
Found at i:46832158 original size:14 final size:14
Alignment explanation
Indices: 46832105--46832158 Score: 60
Period size: 14 Copynumber: 4.0 Consensus size: 14
46832095 TGGGTGTTGG
46832105 GGTTGGGGGGGGAG-
1 GGTTGGGGGGGG-GT
*
46832119 GG-T-GGGTGGGGT
1 GGTTGGGGGGGGGT
*
46832131 GGTTGGGTGGGGGT
1 GGTTGGGGGGGGGT
46832145 GGTTGGGGGGGGGT
1 GGTTGGGGGGGGGT
46832159 TGGGGGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 1 0.03
12 8 0.24
13 2 0.06
14 22 0.67
ACGTcount: A:0.02, C:0.00, G:0.76, T:0.22
Consensus pattern (14 bp):
GGTTGGGGGGGGGT
Found at i:46832165 original size:8 final size:8
Alignment explanation
Indices: 46832045--46832114 Score: 54
Period size: 8 Copynumber: 8.8 Consensus size: 8
46832035 GGGGGGGTGG
*
46832045 GGGGGGTG
1 GGGGGGTT
*
46832053 GGGGGGGT
1 GGGGGGTT
*
46832061 GTGGGGTT
1 GGGGGGTT
46832069 GGCGGGGGTT
1 -G-GGGGGTT
*
46832079 GGGTGGTT
1 GGGGGGTT
46832087 GGGGGGTT
1 GGGGGGTT
* *
46832095 TGGGTGTT
1 GGGGGGTT
46832103 --GGGGTT
1 GGGGGGTT
46832109 GGGGGG
1 GGGGGG
46832115 GGAGGGTGGG
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
6 5 0.10
8 35 0.73
9 2 0.04
10 6 0.12
ACGTcount: A:0.00, C:0.01, G:0.73, T:0.26
Consensus pattern (8 bp):
GGGGGGTT
Found at i:46835516 original size:29 final size:30
Alignment explanation
Indices: 46835475--46835546 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
46835465 ACTTAAGCCA
46835475 AGCTC-AACGAGCTAAAGTAAGCTAAT-TG
1 AGCTCAAACGAGCTAAAGTAAGCTAATGTG
* *
46835503 AGCTCAAACGAGCTAAATTAAGCTCATGTG
1 AGCTCAAACGAGCTAAAGTAAGCTAATGTG
46835533 AGCT-AAATCGAGCT
1 AGCTCAAA-CGAGCT
46835547 GGGAAAAACT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 5 0.13
29 22 0.56
30 12 0.31
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (30 bp):
AGCTCAAACGAGCTAAAGTAAGCTAATGTG
Found at i:46842021 original size:28 final size:28
Alignment explanation
Indices: 46841956--46842109 Score: 256
Period size: 28 Copynumber: 5.5 Consensus size: 28
46841946 ATATTAAGTC
* *
46841956 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
46841983 CGCACAGTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
46842011 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
46842039 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
46842067 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
46842095 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46842110 GTACAATTTA
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
27 21 0.17
28 99 0.82
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:46842050 original size:56 final size:55
Alignment explanation
Indices: 46841956--46842134 Score: 259
Period size: 56 Copynumber: 3.2 Consensus size: 55
46841946 ATATTAAGTC
* * *
46841956 CGCACACTCAGTGCTATATAATCAACTCGCACAGTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTATATAATCAAACT
*
46842011 CGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAA-CTCGCACACTTAGTGCTATATAATCAAACT
* * * *
46842067 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTATATAA-TCAAACT
46842124 CGCACACTTAG
1 CGCACACTTAG
46842135 CGCCAATCTC
Statistics
Matches: 112, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
55 23 0.21
56 71 0.63
57 18 0.16
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTATATAATCAAACT
Found at i:46849105 original size:33 final size:33
Alignment explanation
Indices: 46849067--46849134 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
46849057 TTGCCGAGCG
*
46849067 ATACAAAAAATTCAAGGAATGCTGGTAAGGAAC
1 ATACAAAAAATTCAAGGAATGCTAGTAAGGAAC
* *
46849100 ATACAAAAAATTCGAGTAATGCTAGTAAGGAAC
1 ATACAAAAAATTCAAGGAATGCTAGTAAGGAAC
46849133 AT
1 AT
46849135 TGCAAAGCGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.21
Consensus pattern (33 bp):
ATACAAAAAATTCAAGGAATGCTAGTAAGGAAC
Found at i:46860256 original size:26 final size:26
Alignment explanation
Indices: 46860227--46860286 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
46860217 TTTACTAAAC
** * *
46860227 TACCCCTAAGTATGAAATTACCATTA
1 TACCCCTAAGTACAAAATGACCATGA
46860253 TACCCCTAAGTACAAAATGACCATGA
1 TACCCCTAAGTACAAAATGACCATGA
46860279 TACCCCTA
1 TACCCCTA
46860287 GGGTTAGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.25
Consensus pattern (26 bp):
TACCCCTAAGTACAAAATGACCATGA
Found at i:46860428 original size:28 final size:28
Alignment explanation
Indices: 46860389--46860524 Score: 115
Period size: 27 Copynumber: 5.1 Consensus size: 28
46860379 TAGAGGAATC
46860389 GTTT-TGGTAGCTATGCCACAAATATCT
1 GTTTCTGGTAGCTATGCCACAAATATCT
* *
46860416 GTTTCTGGTAGCTATGCAACAAACATCT
1 GTTTCTGGTAGCTATGCCACAAATATCT
* * *
46860444 -ATTCTGGTGGCTCTGCCAC-AATATCT
1 GTTTCTGGTAGCTATGCCACAAATATCT
* * *
46860470 GTATCTGGT-GACTCTGTCAC-AATATCT
1 GTTTCTGGTAG-CTATGCCACAAATATCT
* * *
46860497 G-TTCTGGCAGCCATGCTACAAAT-TCT
1 GTTTCTGGTAGCTATGCCACAAATATCT
46860523 GT
1 GT
46860525 GGCGTGTAGT
Statistics
Matches: 87, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
26 21 0.24
27 45 0.52
28 21 0.24
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.35
Consensus pattern (28 bp):
GTTTCTGGTAGCTATGCCACAAATATCT
Found at i:46863689 original size:12 final size:12
Alignment explanation
Indices: 46863672--46863703 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
46863662 CAGATTTTGC
46863672 TTTTTTTTTCAA
1 TTTTTTTTTCAA
46863684 TTTTTTTTTCAA
1 TTTTTTTTTCAA
46863696 TTTTTTTT
1 TTTTTTTT
46863704 GAAACTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTTTTTTTCAA
Found at i:46864892 original size:14 final size:14
Alignment explanation
Indices: 46864873--46864915 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
46864863 TTAAAGAAGC
46864873 AATTCATTAAATTA
1 AATTCATTAAATTA
46864887 AATTCATTAAA-TA
1 AATTCATTAAATTA
* *
46864900 AACTCATTTAATTA
1 AATTCATTAAATTA
46864914 AA
1 AA
46864916 CTAAGATGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (14 bp):
AATTCATTAAATTA
Found at i:46868060 original size:21 final size:21
Alignment explanation
Indices: 46868027--46868100 Score: 59
Period size: 21 Copynumber: 3.6 Consensus size: 21
46868017 AAGACACTCA
**
46868027 TTTTTTCAATTTCCTTCTCTT
1 TTTTTTCTTTTTCCTTCTCTT
46868048 TTTTTTCTTTTT-CTT-TAC-T
1 TTTTTTCTTTTTCCTTCT-CTT
*
46868067 TATTTTC-TTTTCAC-TCTCTT
1 TTTTTTCTTTTTC-CTTCTCTT
46868087 TTGTTTTCTTTTTC
1 TT-TTTTCTTTTTC
46868101 TGATTTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
18 4 0.10
19 10 0.24
20 8 0.19
21 15 0.36
22 5 0.12
ACGTcount: A:0.07, C:0.20, G:0.01, T:0.72
Consensus pattern (21 bp):
TTTTTTCTTTTTCCTTCTCTT
Found at i:46870246 original size:18 final size:18
Alignment explanation
Indices: 46870218--46870252 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
46870208 TATGTTCAAA
46870218 TTTTCAGATTTTGTTTTTT
1 TTTTCAGATTTT-TTTTTT
46870237 TTTTCA-ATTTTTTTTT
1 TTTTCAGATTTTTTTTT
46870253 GAATTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.77
Consensus pattern (18 bp):
TTTTCAGATTTTTTTTTT
Found at i:46870247 original size:11 final size:11
Alignment explanation
Indices: 46870233--46870274 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
46870223 AGATTTTGTT
46870233 TTTTTTTTCAA
1 TTTTTTTTCAA
*
46870244 TTTTTTTTTGAA
1 -TTTTTTTTCAA
46870256 TTTTTTTTCAA
1 TTTTTTTTCAA
46870267 TTTTTTTT
1 TTTTTTTT
46870275 GAAACTTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (11 bp):
TTTTTTTTCAA
Found at i:46870249 original size:12 final size:12
Alignment explanation
Indices: 46870232--46870274 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
46870222 CAGATTTTGT
46870232 TTTTTTTTTCAA
1 TTTTTTTTTCAA
*
46870244 TTTTTTTTTGAA
1 TTTTTTTTTCAA
46870256 -TTTTTTTTCAA
1 TTTTTTTTTCAA
46870267 TTTTTTTT
1 TTTTTTTT
46870275 GAAACTTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 10 0.36
12 18 0.64
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTTTTTTTCAA
Found at i:46871465 original size:14 final size:14
Alignment explanation
Indices: 46871443--46871487 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
46871433 TTAAAGAAGC
46871443 AACTCATTAAATTA
1 AACTCATTAAATTA
*
46871457 AATTCATTAAA-TA
1 AACTCATTAAATTA
*
46871470 AACTCATTTAATTA
1 AACTCATTAAATTA
46871484 AACT
1 AACT
46871488 AAGATGAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:46871525 original size:22 final size:22
Alignment explanation
Indices: 46871499--46871568 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
46871489 AGATGAGTTG
46871499 TATTAATGACCAGCAACTCATT
1 TATTAATGACCAGCAACTCATT
* *
46871521 TATTAA--ACTA--AGA-TGAGTT
1 TATTAATGACCAGCA-ACTCA-TT
46871540 GTATTAATGACCAGCAACTCATT
1 -TATTAATGACCAGCAACTCATT
46871563 TATTAA
1 TATTAA
46871569 ACTAAGAGGC
Statistics
Matches: 36, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
18 3 0.08
19 3 0.08
20 9 0.25
22 15 0.42
23 3 0.08
24 3 0.08
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (22 bp):
TATTAATGACCAGCAACTCATT
Found at i:46871531 original size:42 final size:42
Alignment explanation
Indices: 46871470--46871575 Score: 203
Period size: 42 Copynumber: 2.5 Consensus size: 42
46871460 TCATTAAATA
46871470 AACTCATTTAATTAAACTAAGATGAGTTGTATTAATGACCAGC
1 AACTCATTT-ATTAAACTAAGATGAGTTGTATTAATGACCAGC
46871513 AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGC
1 AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGC
46871555 AACTCATTTATTAAACTAAGA
1 AACTCATTTATTAAACTAAGA
46871576 GGCCTAAATG
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 54 0.86
43 9 0.14
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (42 bp):
AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGC
Found at i:46877248 original size:99 final size:98
Alignment explanation
Indices: 46877068--46877299 Score: 272
Period size: 99 Copynumber: 2.3 Consensus size: 98
46877058 TCTATTGTGG
* * * ** *
46877068 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCT-GAAAACTGTAATCACGTGTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA--CGTATACTGGATAA-T-TGGTCACATGTGT
* **
46877131 AGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
62 AGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
46877168 AGGTCACGTGTGTAGTACTAAGT-CTAGGCTACTACGTATACTGGATAATTGGTCACATGTGTAG
1 -GGTCACATGTGTAGTACTAAGTGC-AGGCTACTACGTATACTGGATAATTGGTCACATGTGTAG
*
46877232 TACTAAGTGCAGGCTACTACGTGTACCGGATAATT
64 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
46877267 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
46877300 TGCGTACCAG
Statistics
Matches: 113, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
98 28 0.25
99 48 0.42
100 4 0.04
101 33 0.29
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (98 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACTGGATAATTGGTCACATGTGTAGTA
CTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:46877307 original size:49 final size:49
Alignment explanation
Indices: 46877068--46877312 Score: 267
Period size: 49 Copynumber: 4.9 Consensus size: 49
46877058 TCTATTGTGG
* * * * *
46877068 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-T
** * * **
46877119 AATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * **
46877168 AGGTCACGTGTGTAGTACTAAGT-CTAGGCTACTACGTATACTGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGC-AGGCTACTACGTGTACCAGATAATT
*
46877218 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
46877267 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
46877313 GCTTTGGCTA
Statistics
Matches: 164, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
49 87 0.53
50 41 0.25
51 36 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:46880326 original size:15 final size:15
Alignment explanation
Indices: 46880301--46880359 Score: 68
Period size: 15 Copynumber: 4.0 Consensus size: 15
46880291 CATAGTATCG
46880301 TATCTTGGGTTTCTT
1 TATCTTGGGTTTCTT
*
46880316 TA-CTCTGGGTTTCTC
1 TATCT-TGGGTTTCTT
*
46880331 TATCTTGGATTTCTT
1 TATCTTGGGTTTCTT
*
46880346 TAT-TTGGTTTTCTT
1 TATCTTGGGTTTCTT
46880360 GTTATCTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
14 12 0.32
15 24 0.63
16 2 0.05
ACGTcount: A:0.08, C:0.15, G:0.17, T:0.59
Consensus pattern (15 bp):
TATCTTGGGTTTCTT
Found at i:46882198 original size:49 final size:49
Alignment explanation
Indices: 46882023--46882268 Score: 269
Period size: 49 Copynumber: 5.0 Consensus size: 49
46882013 TCTACTGTAA
* * * * *
46882023 GGTCGCATGTGTAGTACTAAGTGCGGGCTACTATGCGTACCTA-AAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-AGATAA-T-T
* * * **
46882074 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
46882123 AGGTCACGTGGGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
46882173 GGTCACATGTGTAGTACTAACTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
46882222 GGTCGCAAGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
46882269 CTTTGGCTAC
Statistics
Matches: 167, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 87 0.52
50 45 0.27
51 35 0.21
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:46884574 original size:26 final size:26
Alignment explanation
Indices: 46884545--46884604 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
46884535 ATTACTAAAC
** * *
46884545 TACCCCTAAGTATGGAATTACCATTA
1 TACCCCTAAGTATAAAATGACCATGA
*
46884571 TACCCCTAAGTGTAAAATGACCATGA
1 TACCCCTAAGTATAAAATGACCATGA
46884597 TACCCCTA
1 TACCCCTA
46884605 GGGTTAGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
TACCCCTAAGTATAAAATGACCATGA
Found at i:46884749 original size:28 final size:27
Alignment explanation
Indices: 46884708--46884822 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
46884698 TGGAGGAAGC
46884708 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* *
46884735 ATTTCTGGTGGCTATGCCACAAACATCT
1 -GTTCTGGTGGCTATGCCACAAATATCT
* *
46884763 GTTCTGATGGCTCTGCCAC-AATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* * * *
46884789 GTATCTAGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTATGCCACAAATATCT
46884816 GTTCTGG
1 GTTCTGG
46884823 CAGTCATGCT
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
26 12 0.16
27 38 0.51
28 25 0.33
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:46886473 original size:10 final size:11
Alignment explanation
Indices: 46886449--46886499 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
46886439 AAACGAGTTC
46886449 ATTGAGCTAGA
1 ATTGAGCTAGA
46886460 ATTGAGCT-GA
1 ATTGAGCTAGA
*
46886470 ATTGAGCT-CA
1 ATTGAGCTAGA
46886480 A-TGAGCTAGA
1 ATTGAGCTAGA
*
46886490 TTTGAGCTAG
1 ATTGAGCTAG
46886500 GTCAACTTGC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 6 0.17
10 13 0.37
11 16 0.46
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (11 bp):
ATTGAGCTAGA
Found at i:46905295 original size:56 final size:56
Alignment explanation
Indices: 46905235--46905371 Score: 229
Period size: 56 Copynumber: 2.4 Consensus size: 56
46905225 TCCCAGATAA
* * *
46905235 GGTCTTACTCGTACACATATCTCGAAGTAACATATCAATGCCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGAAGTAACATATCAATGCCAACGTATAAAACGT
* *
46905291 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTAACATATCAATGCCAACGTATAAAACGT
46905347 GGTCTTACTCGCACACATATATCGA
1 GGTCTTACTCGCACACATATATCGA
46905372 TGCCGTGGTC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 76 1.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTAACATATCAATGCCAACGTATAAAACGT
Found at i:46906512 original size:11 final size:11
Alignment explanation
Indices: 46906498--46906524 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
46906488 AATTTCACAC
46906498 ACACATAATAA
1 ACACATAATAA
46906509 ACACATAATAA
1 ACACATAATAA
46906520 ACACA
1 ACACA
46906525 AAAATAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.22, G:0.00, T:0.15
Consensus pattern (11 bp):
ACACATAATAA
Found at i:46908970 original size:11 final size:11
Alignment explanation
Indices: 46908954--46908981 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
46908944 AAGCCCATTG
46908954 GGCCCAGTTTT
1 GGCCCAGTTTT
46908965 GGCCCAGTTTT
1 GGCCCAGTTTT
46908976 GGCCCA
1 GGCCCA
46908982 TCGAGGCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.11, C:0.32, G:0.29, T:0.29
Consensus pattern (11 bp):
GGCCCAGTTTT
Found at i:46929578 original size:20 final size:19
Alignment explanation
Indices: 46929555--46929619 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
46929545 AAGCTCAAAC
46929555 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
46929575 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
46929595 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
46929615 GAGCT
1 GAGCT
46929620 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:46932520 original size:20 final size:20
Alignment explanation
Indices: 46932474--46932511 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
46932464 AGCTGAAAAG
46932474 AAGCT-AAATCAAGCTCAAAT
1 AAGCTGAAA-CAAGCTCAAAT
46932494 AAGCTGAAACAAGCTCAA
1 AAGCTGAAACAAGCTCAA
46932512 GTGAGCTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.50, C:0.21, G:0.13, T:0.16
Consensus pattern (20 bp):
AAGCTGAAACAAGCTCAAAT
Found at i:46937409 original size:40 final size:40
Alignment explanation
Indices: 46937349--46937614 Score: 480
Period size: 40 Copynumber: 6.7 Consensus size: 40
46937339 GCAAACACAT
* *
46937349 TTGCCTTC-GGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
46937388 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
46937428 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
46937468 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
46937508 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
46937548 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
46937588 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
46937615 ATCCAATGTT
Statistics
Matches: 218, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
39 8 0.04
40 210 0.96
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:46946190 original size:40 final size:40
Alignment explanation
Indices: 46946142--46946408 Score: 489
Period size: 40 Copynumber: 6.7 Consensus size: 40
46946132 GCAAACACAT
* *
46946142 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
46946182 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
46946222 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
46946262 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
46946302 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
46946342 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
46946382 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
46946409 ATCCAATGTT
Statistics
Matches: 219, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 219 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:46949043 original size:21 final size:22
Alignment explanation
Indices: 46949004--46949047 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
46948994 ATGCATACTC
46949004 CTTCAAGCTCAAATCAGCTCAA
1 CTTCAAGCTCAAATCAGCTCAA
* *
46949026 CTTCAA-CTCAACTTAGCTCAA
1 CTTCAAGCTCAAATCAGCTCAA
46949047 C
1 C
46949048 GAGCTCGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.34, C:0.34, G:0.07, T:0.25
Consensus pattern (22 bp):
CTTCAAGCTCAAATCAGCTCAA
Found at i:46963649 original size:27 final size:26
Alignment explanation
Indices: 46963619--46963705 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 26
46963609 ATCTTAAATG
46963619 TGTGTCTTAAATACTGCACTATAATTA
1 TGTGTCTTAAATACTGCACT-TAATTA
*
46963646 TGTGTCTTAAATACTGCACTT--TAA
1 TGTGTCTTAAATACTGCACTTAATTA
46963670 TGTGTCTTAAATACTGCACTTTAATTA
1 TGTGTCTTAAATACTGCAC-TTAATTA
46963697 TGTGTCTTA
1 TGTGTCTTA
46963706 GTTTTTACAT
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
24 21 0.38
25 2 0.04
26 1 0.02
27 31 0.56
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.44
Consensus pattern (26 bp):
TGTGTCTTAAATACTGCACTTAATTA
Found at i:46963677 original size:24 final size:24
Alignment explanation
Indices: 46963619--46963694 Score: 116
Period size: 24 Copynumber: 3.0 Consensus size: 24
46963609 ATCTTAAATG
*
46963619 TGTGTCTTAAATACTGCACTATAATTA
1 TGTGTCTTAAATACTGCACT-T--TAA
46963646 TGTGTCTTAAATACTGCACTTTAA
1 TGTGTCTTAAATACTGCACTTTAA
46963670 TGTGTCTTAAATACTGCACTTTAA
1 TGTGTCTTAAATACTGCACTTTAA
46963694 T
1 T
46963695 TATGTGTCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
24 27 0.56
26 1 0.02
27 20 0.42
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (24 bp):
TGTGTCTTAAATACTGCACTTTAA
Found at i:46965991 original size:40 final size:39
Alignment explanation
Indices: 46965947--46966079 Score: 133
Period size: 40 Copynumber: 3.3 Consensus size: 39
46965937 ACTATGTTTG
* *
46965947 GCACTTAATGTGTGATTCGAGATAGTTTCAGCTATATAT
1 GCACTTAGTGTGTGATTCGAGATAGCTTCAGCTATATAT
* *
46965986 AGCACTTAGTGTGTGATTC-AGAATAGCTTCTGCTAAATAT
1 -GCACTTAGTGTGTGATTCGAG-ATAGCTTCAGCTATATAT
* ** * *
46966026 GACACTTAGTGTGCGAGACTGAGATAGCTTCAGCTATCAAAG
1 G-CACTTAGTGTGTGATTC-GAGATAGCTTCAGCTAT-ATAT
46966068 GCACTTAGTGTG
1 GCACTTAGTGTG
46966080 CAAGATTATA
Statistics
Matches: 77, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
39 3 0.04
40 46 0.60
41 23 0.30
42 5 0.06
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (39 bp):
GCACTTAGTGTGTGATTCGAGATAGCTTCAGCTATATAT
Found at i:46966073 original size:41 final size:42
Alignment explanation
Indices: 46966028--46966127 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 42
46966018 CTAAATATGA
*
46966028 CACTTAGTGTGCGAGACTGA-GATAGCTTCAGCTAT-CAAAGG
1 CACTTAGTGTGCGAGA-TGATAATAGCTTCAGCTATGCAAAGG
* * * ***
46966069 CACTTAGTGTGCAAGATTATAATAGCTTCGGCTATGCTTTGG
1 CACTTAGTGTGCGAGATGATAATAGCTTCAGCTATGCAAAGG
46966111 CACTTAGTGTGCGAGAT
1 CACTTAGTGTGCGAGAT
46966128 ATCGAATATT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
40 2 0.04
41 28 0.57
42 19 0.39
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (42 bp):
CACTTAGTGTGCGAGATGATAATAGCTTCAGCTATGCAAAGG
Found at i:46973537 original size:46 final size:44
Alignment explanation
Indices: 46973484--46973655 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 44
46973474 TGGGCATCCT
*
46973484 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-GTCCG
*** * *
46973530 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAGTCCG
* *
46973577 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-GTCCG
* *
46973623 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46973656 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (44 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAGTCCG
Found at i:46973635 original size:93 final size:93
Alignment explanation
Indices: 46973476--46973647 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
46973466 AGGATATTTG
* * *
46973476 GGCATCCTAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
46973541 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
46973569 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
*
46973634 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
46973648 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:46978437 original size:14 final size:14
Alignment explanation
Indices: 46978390--46978437 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
46978380 GTACGAATGG
*
46978390 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
46978404 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
46978418 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
46978432 ATTGGT
1 AATGGT
46978438 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:46979681 original size:12 final size:13
Alignment explanation
Indices: 46979657--46979683 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46979647 AAAAAATATT
46979657 TCCCGCAAAAAAA
1 TCCCGCAAAAAAA
46979670 TCCCGCAAAAAAA
1 TCCCGCAAAAAAA
46979683 T
1 T
46979684 AAGTCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.30, G:0.07, T:0.11
Consensus pattern (13 bp):
TCCCGCAAAAAAA
Found at i:46989668 original size:10 final size:10
Alignment explanation
Indices: 46989653--46989699 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
46989643 ATAAATCACT
46989653 TTTTTTTCGA
1 TTTTTTTCGA
**
46989663 TTTTTTTTTA
1 TTTTTTTCGA
46989673 TTTTTTTCGAA
1 TTTTTTTCG-A
*
46989684 TTTTTTT-TA
1 TTTTTTTCGA
46989693 TTTTTTT
1 TTTTTTT
46989700 AACTTGTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
9 8 0.26
10 15 0.48
11 8 0.26
ACGTcount: A:0.11, C:0.04, G:0.04, T:0.81
Consensus pattern (10 bp):
TTTTTTTCGA
Found at i:46989678 original size:20 final size:20
Alignment explanation
Indices: 46989653--46989699 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
46989643 ATAAATCACT
*
46989653 TTTTTTTCGATTTTTTTTTA
1 TTTTTTTCGAATTTTTTTTA
46989673 TTTTTTTCGAATTTTTTTTA
1 TTTTTTTCGAATTTTTTTTA
46989693 TTTTTTT
1 TTTTTTT
46989700 AACTTGTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.11, C:0.04, G:0.04, T:0.81
Consensus pattern (20 bp):
TTTTTTTCGAATTTTTTTTA
Found at i:46990098 original size:14 final size:14
Alignment explanation
Indices: 46990051--46990098 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
46990041 GTACGAATGG
*
46990051 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
46990065 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
46990079 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
46990093 ATTGGT
1 AATGGT
46990099 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:46993757 original size:15 final size:15
Alignment explanation
Indices: 46993737--46993786 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 15
46993727 CGAGAGATAA
46993737 AAAAAGAAATGAAAG
1 AAAAAGAAATGAAAG
46993752 AAAAAGAAATTGAGAAAG
1 AAAAAGAAA-T--GAAAG
*
46993770 AAAAAGAGAATAAAAG
1 AAAAAGA-AATGAAAG
46993786 A
1 A
46993787 GAACAAAAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
15 9 0.30
16 6 0.20
18 13 0.43
19 2 0.07
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.08
Consensus pattern (15 bp):
AAAAAGAAATGAAAG
Found at i:47001218 original size:43 final size:43
Alignment explanation
Indices: 47001061--47001219 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 43
47001051 TATGTGTTTT
* * *
47001061 CGTGTAAGACCACGCCTAGGACGTTGGCA--TATACTTATGGTTTA
1 CGTGTAAGACCACGTCTAGGATGTTGGCATCTATA-TT-T-GATTA
* * * * * *
47001105 CGTGTAAGATCATGTCTGGGATGTTGGCATC-GTACTTGATTT
1 CGTGTAAGACCACGTCTAGGATGTTGGCATCTATATTTGATTA
* *
47001147 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCTATATTTGATTA
1 CGTGTAAGACCAC-GTCTAGGA-TGTTGGCATCTATATTTGATTA
*
47001190 CATGTAAGACCACGTCTAGGATGTTGGCAT
1 CGTGTAAGACCACGTCTAGGATGTTGGCAT
47001220 TGTATGAGCT
Statistics
Matches: 90, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
42 29 0.32
43 33 0.37
44 26 0.29
45 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTAGGATGTTGGCATCTATATTTGATTA
Found at i:47001962 original size:10 final size:10
Alignment explanation
Indices: 47001922--47001968 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 10
47001912 TAATGAAACA
*
47001922 TATGCTTTGG
1 TATGATTTGG
47001932 TATGAATTTGG
1 TATG-ATTTGG
*
47001943 TTTAGATTTGG
1 TAT-GATTTGG
47001954 TATGATTTGG
1 TATGATTTGG
47001964 T-TGAT
1 TATGAT
47001969 GAATTGAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 4 0.12
10 12 0.38
11 15 0.47
12 1 0.03
ACGTcount: A:0.19, C:0.02, G:0.28, T:0.51
Consensus pattern (10 bp):
TATGATTTGG
Found at i:47007799 original size:14 final size:14
Alignment explanation
Indices: 47007780--47007808 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47007770 AGGAACTTAT
47007780 ACGGAAAATTTTGC
1 ACGGAAAATTTTGC
47007794 ACGGAAAATTTTGC
1 ACGGAAAATTTTGC
47007808 A
1 A
47007809 TGAGGCACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (14 bp):
ACGGAAAATTTTGC
Found at i:47013145 original size:15 final size:15
Alignment explanation
Indices: 47013099--47013146 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
47013089 AAACCTATAA
*
47013099 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
47013114 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
47013128 AAACTTCATATCCAT
1 AAACTTCATATCCAT
47013143 AAAC
1 AAAC
47013147 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:47014471 original size:18 final size:18
Alignment explanation
Indices: 47014448--47014497 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
47014438 GAAAGACAAA
*
47014448 GAAAAAGAGATTGAGAGT
1 GAAAAAGAGAATGAGAGT
* *
47014466 GAAAAAGAAAATGAGATT
1 GAAAAAGAGAATGAGAGT
*
47014484 GAAAATGAGAATGA
1 GAAAAAGAGAATGA
47014498 AAAAGAGTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.56, C:0.00, G:0.28, T:0.16
Consensus pattern (18 bp):
GAAAAAGAGAATGAGAGT
Found at i:47014474 original size:24 final size:24
Alignment explanation
Indices: 47014445--47014522 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
47014435 AATGAAAGAC
*
47014445 AAAGAAAAAGAGATTGAGAGTGAA
1 AAAGAAAAAGAGATTGAGAGTGAG
* * *
47014469 AAAGAAAATGAGATTGAAAATGAG
1 AAAGAAAAAGAGATTGAGAGTGAG
* * *
47014493 AATGAAAAAGAGTTTGAGAGAGAG
1 AAAGAAAAAGAGATTGAGAGTGAG
47014517 AAAGAA
1 AAAGAA
47014523 TGTGAACAAG
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.58, C:0.00, G:0.28, T:0.14
Consensus pattern (24 bp):
AAAGAAAAAGAGATTGAGAGTGAG
Found at i:47016997 original size:14 final size:14
Alignment explanation
Indices: 47016978--47017022 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
47016968 AACTCATCTT
*
47016978 AGTTTAATTAAATG
1 AGTTTAATTTAATG
*
47016992 AGTTT-ATTTGATG
1 AGTTTAATTTAATG
*
47017005 AATTTAATTTAATG
1 AGTTTAATTTAATG
47017019 AGTT
1 AGTT
47017023 GCTTCTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:47018050 original size:15 final size:15
Alignment explanation
Indices: 47018004--47018051 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
47017994 AAATCTATAA
*
47018004 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
47018019 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
47018033 AAACTTCATATCCAT
1 AAACTTCATATCCAT
47018048 AAAC
1 AAAC
47018052 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:47022799 original size:21 final size:20
Alignment explanation
Indices: 47022757--47022800 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
47022747 AGAAAAAAAT
*
47022757 AGAAAAAGAAAAAAAGAGTG
1 AGAAAAACAAAAAAAGAGTG
* *
47022777 AGAAACAACAAAAAGAGATTG
1 AGAAA-AACAAAAAAAGAGTG
47022798 AGA
1 AGA
47022801 CTGAAAAAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.66, C:0.05, G:0.23, T:0.07
Consensus pattern (20 bp):
AGAAAAACAAAAAAAGAGTG
Found at i:47037197 original size:27 final size:27
Alignment explanation
Indices: 47037167--47037501 Score: 302
Period size: 27 Copynumber: 12.4 Consensus size: 27
47037157 TTTCACCCTA
* *
47037167 CAAGGGTGTTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
47037194 CAAGGGTATTTCT-GTAATTTTTA-AAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T
* *
47037222 CAAGGGTATTTTAGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
47037249 CAAGGGTATATGGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
47037276 CGAGGGTATTTTAGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
47037303 CAAAGGTATTTTAGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
47037330 CGAGGGTATTTCGATAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
47037357 CAGGGGTATTTCGATAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
47037383 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * *
47037411 CAATGGTATTTTGGTAATTTTGCTAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
47037437 CAAGGGTACTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
** ** *
47037464 CAAGGGTA-TTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
47037490 CAAGGGTATTTT
1 CAAGGGTATTTT
47037502 AGAAATTCCA
Statistics
Matches: 262, Mismatches: 37, Indels: 18
0.83 0.12 0.06
Matches are distributed among these distances:
26 47 0.18
27 190 0.73
28 25 0.10
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:47037521 original size:26 final size:27
Alignment explanation
Indices: 47037497--47037600 Score: 93
Period size: 27 Copynumber: 3.9 Consensus size: 27
47037487 AACCAAGGGT
*
47037497 ATTTTAGAAATTCCACCCTACAGGGGC
1 ATTTTAGAAATTCTACCCTACAGGGGC
* * *
47037524 AATTTAGTAAA-TCTATCCTACAAGGGC
1 ATTTTAG-AAATTCTACCCTACAGGGGC
* * *
47037551 ATTTCAGTAATTCTACCCTACAGGGGT
1 ATTTTAGAAATTCTACCCTACAGGGGC
* * * *
47037578 ATTTCAGTAATACTAGCCTACAG
1 ATTTTAGAAATTCTACCCTACAG
47037601 ATATGAGATT
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 2 0.03
27 58 0.92
28 3 0.05
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (27 bp):
ATTTTAGAAATTCTACCCTACAGGGGC
Found at i:47037598 original size:54 final size:54
Alignment explanation
Indices: 47037490--47037599 Score: 134
Period size: 54 Copynumber: 2.0 Consensus size: 54
47037480 TTTTGTAAAC
* * *
47037490 CAAGGGTATTTTAGAAATTCCACCCTACAGGGGCAATTTAGTAAATCTATCCTA
1 CAAGGGCATTTCAGAAATTCCACCCTACAGGGGCAATTTAGTAAATCTAGCCTA
* * *
47037544 CAAGGGCATTTCAGTAATTCTACCCTACAGGGG-TATTTCAGT-AATACTAGCCTA
1 CAAGGGCATTTCAGAAATTCCACCCTACAGGGGCAATTT-AGTAAAT-CTAGCCTA
47037598 CA
1 CA
47037600 GATATGAGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
53 7 0.15
54 41 0.85
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (54 bp):
CAAGGGCATTTCAGAAATTCCACCCTACAGGGGCAATTTAGTAAATCTAGCCTA
Found at i:47045651 original size:42 final size:42
Alignment explanation
Indices: 47045588--47045714 Score: 168
Period size: 42 Copynumber: 3.0 Consensus size: 42
47045578 CTTCGTTTTC
** * *
47045588 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
* *
47045631 T-GATGCCATAGCCTAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
*
47045672 TCGATGCCATAGCCCAGCTATGGTCTTACACA-AATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
47045713 TC
1 TC
47045715 TTACTGATGC
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
41 11 0.15
42 62 0.84
43 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:47045740 original size:46 final size:47
Alignment explanation
Indices: 47045671--47045792 Score: 160
Period size: 46 Copynumber: 2.6 Consensus size: 47
47045661 ATATTCATAT
* * * *
47045671 ATCGATGCCATAGCCCAGCTATGGTCTTACACAAATCA-CATATCTTAC
1 ATCGATGCCATATCCCAGATATGGTCTTACAC-AAT-AGCATATATCAC
*
47045719 -T-GATGCCATATCCCAGATATGGTCTTATACAATAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTACACAATAGCATATATCAC
47045764 ATCGATGCCATATCCCAGATATGGTCTTA
1 ATCGATGCCATATCCCAGATATGGTCTTA
47045793 TACGAAAATC
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
44 1 0.02
45 11 0.17
46 27 0.41
47 27 0.41
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (47 bp):
ATCGATGCCATATCCCAGATATGGTCTTACACAATAGCATATATCAC
Found at i:47045776 original size:47 final size:48
Alignment explanation
Indices: 47045671--47045804 Score: 168
Period size: 47 Copynumber: 2.8 Consensus size: 48
47045661 ATATTCATAT
* * * * *
47045671 ATCGATGCCATAGCCCAGCTATGGTCTTACACAAATCACATATCTTAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAAATCACATATATCAC
47045719 -T-GATGCCATATCCCAGATATGGTCTTATAC-AAT-AGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAAATCA-CATATATCAC
47045764 ATCGATGCCATATCCCAGATATGGTCTTATACGAAAATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATAC--AAATCAC
47045805 TTGTCACTTG
Statistics
Matches: 74, Mismatches: 5, Indels: 12
0.81 0.05 0.13
Matches are distributed among these distances:
44 1 0.01
45 11 0.15
46 27 0.36
47 30 0.41
50 4 0.05
51 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.28
Consensus pattern (48 bp):
ATCGATGCCATATCCCAGATATGGTCTTATACAAATCACATATATCAC
Found at i:47045864 original size:31 final size:31
Alignment explanation
Indices: 47045827--47046093 Score: 374
Period size: 31 Copynumber: 8.6 Consensus size: 31
47045817 ACTTGTAGTC
* * *
47045827 GAAGCTACCACTATTCACTGATCAGGTAGC-
1 GAAGCTACCACTTTTCACTAATCACGTAGCT
* * * *
47045857 CAGAGCTACCACTTTTCACTGATCAAGTAGCC
1 GA-AGCTACCACTTTTCACTAATCACGTAGCT
* *
47045889 GGAGCTACCACTTTTCACTAATCACGTAGCA
1 GAAGCTACCACTTTTCACTAATCACGTAGCT
* *
47045920 GAACCTACCACTTTTCACTGATCACGTAGCT
1 GAAGCTACCACTTTTCACTAATCACGTAGCT
*
47045951 GAAGCTACCACTTTTCACTAATCACGTAGCA
1 GAAGCTACCACTTTTCACTAATCACGTAGCT
* *
47045982 GAACCTACCACTTTTCACTGATCACGTAGCT
1 GAAGCTACCACTTTTCACTAATCACGTAGCT
*
47046013 GAAGCTACCACTTTTCACTAATCGCGTAGCT
1 GAAGCTACCACTTTTCACTAATCACGTAGCT
*
47046044 GAAGCTACCACTTTTCACTAATCGCGTAGCT
1 GAAGCTACCACTTTTCACTAATCACGTAGCT
47046075 GAAGCTACCACTTTTCACT
1 GAAGCTACCACTTTTCACT
47046094 TGTCATTTGT
Statistics
Matches: 214, Mismatches: 21, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
30 1 0.00
31 213 1.00
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (31 bp):
GAAGCTACCACTTTTCACTAATCACGTAGCT
Found at i:47046174 original size:50 final size:51
Alignment explanation
Indices: 47046069--47046197 Score: 183
Period size: 50 Copynumber: 2.5 Consensus size: 51
47046059 CACTAATCGC
*
47046069 GTAGCTGAAGCTACCACTTT-TCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCTGAAGCTATCA-TTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
47046120 GTAGCTGAAGCTATCATTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCTGAAGCTATCATTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
* *
47046170 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCTGAAGCTATCATTTATCACTTGT
47046198 TGCCATGGTC
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
50 46 0.65
51 25 0.35
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (51 bp):
GTAGCTGAAGCTATCATTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:47050491 original size:40 final size:40
Alignment explanation
Indices: 47050447--47050531 Score: 161
Period size: 40 Copynumber: 2.1 Consensus size: 40
47050437 TGTAAACTAA
47050447 ATGAACAAATGAGTTACTTAATGCATGACTTAATTTAATC
1 ATGAACAAATGAGTTACTTAATGCATGACTTAATTTAATC
*
47050487 ATGAACAAATGAGTTACTTAATGCATGACTTAATTTAATG
1 ATGAACAAATGAGTTACTTAATGCATGACTTAATTTAATC
47050527 ATGAA
1 ATGAA
47050532 AACTTAACTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (40 bp):
ATGAACAAATGAGTTACTTAATGCATGACTTAATTTAATC
Found at i:47061098 original size:6 final size:6
Alignment explanation
Indices: 47061087--47061273 Score: 152
Period size: 6 Copynumber: 30.8 Consensus size: 6
47061077 AACCAAAATG
* * *
47061087 AGAATC AGAATC AGAACC AGTAA-C AGAATC AGAATC AGAATC AGTATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* * *
47061135 AGTAA-C AGAATC AGAATC AAAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
47061184 AAAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * *
47061232 AGAATT AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
47061274 GTGAATGCAA
Statistics
Matches: 144, Mismatches: 23, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
5 10 0.07
6 122 0.85
7 10 0.07
8 2 0.01
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:47061102 original size:30 final size:29
Alignment explanation
Indices: 47061066--47061273 Score: 201
Period size: 30 Copynumber: 7.1 Consensus size: 29
47061056 AAGAAACATT
* * *
47061066 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
**
47061096 ATCAGAACCAGTAACAGAATCAGAATCAGA
1 ATCAGAA-TTGTAACAGAATCAGAATCAGA
* *
47061126 ATCAGTATTAGTAACAGAATCAGAATCAAA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
* *
47061156 ATCAGAATTAGGTGACAGAATCAGAATCAAA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
47061187 ATC---A--GTAACAGAATCAGAATCAGA
1 ATCAGAATTGTAACAGAATCAGAATCAGA
* *
47061211 ATCAGTATTAGTAACAGAATCAGAATTAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
*
47061241 ATCAGAATTACGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
47061272 AT
1 AT
47061274 GTGAATGCAA
Statistics
Matches: 149, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
24 21 0.14
27 1 0.01
28 1 0.01
30 81 0.54
31 45 0.30
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:47061103 original size:24 final size:24
Alignment explanation
Indices: 47061066--47061247 Score: 95
Period size: 24 Copynumber: 7.5 Consensus size: 24
47061056 AAGAAACATT
** *
47061066 ATCAGAATTGGAACCAAAATGAGA
1 ATCAGAATCAGAACCAAAATCAGA
*
47061090 ATCAGAATCAGAACCAGTAA-CAGA
1 ATCAGAATCAGAACCA-AAATCAGA
* ** *
47061114 ATCAGAATCAGAATCAGTATTAGTA
1 ATCAGAATCAGAACCAAAATCAG-A
*
47061139 A-CAGAATCAGAATCAAAATCAGA
1 ATCAGAATCAGAACCAAAATCAGA
* * * * *
47061162 ATTAG-GTGACAGAATCAGAATCAAA
1 ATCAGAAT--CAGAACCAAAATCAGA
* *
47061187 ATCAGTAA-CAGAATCAGAATCAGA
1 ATCAG-AATCAGAACCAAAATCAGA
* * *
47061211 ATCAGTATTAGTAA-CAGAATCAGA
1 ATCAGAATCAG-AACCAAAATCAGA
*
47061235 ATTAGAATCAGAA
1 ATCAGAATCAGAA
47061248 TTACGTGACA
Statistics
Matches: 125, Mismatches: 23, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
23 7 0.06
24 94 0.75
25 24 0.19
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (24 bp):
ATCAGAATCAGAACCAAAATCAGA
Found at i:47061194 original size:85 final size:85
Alignment explanation
Indices: 47061087--47061269 Score: 321
Period size: 85 Copynumber: 2.2 Consensus size: 85
47061077 AACCAAAATG
*
47061087 AGAATCAGAATCAGAACCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAAAACCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
47061152 CAAAATCAGAATTAGGTGAC
66 CAAAATCAGAATTACGTGAC
*
47061172 AGAATCAGAATCAAAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAAAACCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
* *
47061237 TAGAATCAGAATTACGTGAC
66 CAAAATCAGAATTACGTGAC
47061257 AGAATCAGAATCA
1 AGAATCAGAATCA
47061270 GAATGTGAAT
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAAAACCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
CAAAATCAGAATTACGTGAC
Found at i:47061427 original size:27 final size:26
Alignment explanation
Indices: 47061391--47061456 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
47061381 AGCATGACTG
*
47061391 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
47061417 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
47061444 CCAGAATCAGATA
1 CCAGAA-CAGATA
47061457 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:47061461 original size:27 final size:27
Alignment explanation
Indices: 47061391--47061464 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
47061381 AGCATGACTG
* *
47061391 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
47061417 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
47061444 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
47061465 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:47061471 original size:27 final size:27
Alignment explanation
Indices: 47061415--47061472 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
47061405 GTGACAGAGT
* * *
47061415 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
47061442 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
47061469 CACC
1 CACC
47061473 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:47061677 original size:22 final size:22
Alignment explanation
Indices: 47061629--47061687 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
47061619 GTAAATACGT
*
47061629 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
47061651 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
47061673 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
47061688 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:47061854 original size:27 final size:26
Alignment explanation
Indices: 47061775--47061857 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
47061765 TAGATCGGTC
* * *
47061775 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
*
47061801 ATACAAATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
47061828 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
47061855 AAC
1 AAC
47061858 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.14
27 42 0.86
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:47062086 original size:27 final size:27
Alignment explanation
Indices: 47062056--47062244 Score: 225
Period size: 27 Copynumber: 7.0 Consensus size: 27
47062046 GGGGCAAAAT
* * *
47062056 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47062083 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47062110 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
47062137 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47062164 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
47062191 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
47062218 AGAAATTCTACCCTACAGGGGAATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
47062245 AATAATTGCA
Statistics
Matches: 141, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 141 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:47062245 original size:54 final size:54
Alignment explanation
Indices: 47062056--47062251 Score: 250
Period size: 54 Copynumber: 3.6 Consensus size: 54
47062046 GGGGCAAAAT
* * * *
47062056 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* *
47062110 GGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTC
* * *
47062164 GGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * * * *
47062218 AGAAATTCTACCCTACAGGGGAATTTCAATAATT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATT
47062252 GCACAATCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 121 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:47062286 original size:27 final size:27
Alignment explanation
Indices: 47062256--47062935 Score: 827
Period size: 27 Copynumber: 25.2 Consensus size: 27
47062246 ATAATTGCAC
*
47062256 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
47062283 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
47062310 AA-CTGAGGGTAAACCAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
47062337 AATCAAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
47062364 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
**** *
47062391 AATCGAGGGTAAGGTAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
47062418 AA-CTGAGGGTAAAACGATAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* ** *
47062445 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
47062472 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
47062499 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
47062526 AATCGAGGGTAAAACGGTAATTATATA
1 AATCGAGGGTAAAACGGTAATTCTATA
**
47062553 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
47062580 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
47062607 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTATA
** * *
47062634 AATTAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
47062661 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
47062688 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
*
47062715 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
47062742 AATCGAAGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTATA
47062769 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
47062796 AATCGAGGGTAAACCGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
47062823 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
47062850 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
47062877 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
47062904 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
47062931 AATCG
1 AATCG
47062936 GGAGTACTTT
Statistics
Matches: 565, Mismatches: 76, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.01
27 555 0.98
28 5 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:47064942 original size:6 final size:6
Alignment explanation
Indices: 47064931--47065115 Score: 163
Period size: 6 Copynumber: 30.8 Consensus size: 6
47064921 AACCAAAATG
*
47064931 AGAATC AGAATC AGAATC AGTAAT- AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
47064979 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
47065028 A-AATC AGTAA-C AGAATC A-AATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
47065074 AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
47065116 GTGAATGCAA
Statistics
Matches: 147, Mismatches: 14, Indels: 36
0.75 0.07 0.18
Matches are distributed among these distances:
5 22 0.15
6 111 0.76
7 11 0.07
8 3 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:47064946 original size:30 final size:29
Alignment explanation
Indices: 47064910--47065115 Score: 203
Period size: 30 Copynumber: 7.1 Consensus size: 29
47064900 AAGAAACATT
* * *
47064910 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
* *
47064940 ATCAGAATCAGTAATAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
47064970 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
*
47065000 ATCAGAATTAGGTGACAGAATCAGAATCA-A
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
47065030 ATC---A--GTAACAGAATCA-AATCAGA
1 ATCAGAATTGTAACAGAATCAGAATCAGA
*
47065053 ATCAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
*
47065083 ATCAGAATTACGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
47065114 AT
1 AT
47065116 GTGAATGCAA
Statistics
Matches: 149, Mismatches: 13, Indels: 27
0.79 0.07 0.14
Matches are distributed among these distances:
22 5 0.03
23 15 0.10
26 1 0.01
27 1 0.01
29 13 0.09
30 72 0.48
31 42 0.28
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:47065070 original size:83 final size:85
Alignment explanation
Indices: 47064931--47065115 Score: 329
Period size: 83 Copynumber: 2.2 Consensus size: 85
47064921 AACCAAAATG
*
47064931 AGAATCAGAATCAGAATCAGTAATAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
47064996 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
*
47065016 AGAATCAGAATCA-AATCAGTAACAGAATCA-AATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
47065079 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
47065099 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
47065116 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
83 64 0.67
84 19 0.20
85 13 0.14
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.21
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATTACGTGAC
Found at i:47065270 original size:27 final size:26
Alignment explanation
Indices: 47065233--47065298 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
47065223 AGCATGGCTG
*
47065233 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
47065259 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
47065286 CCAGAATCAGATA
1 CCAGAA-CAGATA
47065299 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:47065303 original size:27 final size:27
Alignment explanation
Indices: 47065233--47065306 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
47065223 AGCATGGCTG
* *
47065233 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
47065259 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
47065286 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
47065307 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:47065313 original size:27 final size:27
Alignment explanation
Indices: 47065257--47065314 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
47065247 GTGACAGAGT
* * *
47065257 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
47065284 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
47065311 CACC
1 CACC
47065315 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:47065694 original size:27 final size:26
Alignment explanation
Indices: 47065615--47065697 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
47065605 TCGATCGGTC
* ** *
47065615 AACAGATATTGTGACAGAGTGACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
47065641 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
47065668 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
47065695 AAC
1 AAC
47065698 GTTTCCTTCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:47065926 original size:27 final size:27
Alignment explanation
Indices: 47065896--47066091 Score: 203
Period size: 27 Copynumber: 7.3 Consensus size: 27
47065886 GGGGCAAAAT
* * *
47065896 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47065923 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47065950 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
47065977 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
47066004 GTTAATTCCATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
47066031 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
47066058 GAAAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47066085 AGTAATT
1 GGTAATT
47066092 GCAATATCAA
Statistics
Matches: 138, Mismatches: 31, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:47066091 original size:81 final size:81
Alignment explanation
Indices: 47065899--47066091 Score: 235
Period size: 81 Copynumber: 2.4 Consensus size: 81
47065889 GCAAAATGGT
* * * * * * * * *
47065899 AATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
1 AATTCTACCCTACAGGGGTATTTCAGTAATTCCACCCTACAAGGGTATTTCAGTAATTCTACCCT
*
47065964 ATAAGGGTATTTCGAT
66 ATAAGGGTATTTCGAA
* * *
47065980 AATTCTACCCTACAGGGGTATTT-TGTTAATTCCATCCTATAAGGGTATTTCAGTAATTCTACCC
1 AATTCTACCCTACAGGGGTATTTCAG-TAATTCCACCCTACAAGGGTATTTCAGTAATTCTACCC
*
47066044 TATAGGGGTATTTCGAA
65 TATAAGGGTATTTCGAA
*
47066061 AATTCTACCTTACAGGGGTATTTCAGTAATT
1 AATTCTACCCTACAGGGGTATTTCAGTAATT
47066092 GCAATATCAA
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.01
81 93 0.98
82 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
AATTCTACCCTACAGGGGTATTTCAGTAATTCCACCCTACAAGGGTATTTCAGTAATTCTACCCT
ATAAGGGTATTTCGAA
Found at i:47066143 original size:27 final size:27
Alignment explanation
Indices: 47066113--47066531 Score: 415
Period size: 27 Copynumber: 15.5 Consensus size: 27
47066103 AGTAAAATAG
47066113 TAATTCTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
47066140 TAATTTTGTAAA-CTGAGGGT-AAACCA
1 TAATTCTGTAAATC-GAGGGTAAAACGA
* * *
47066166 GTAATTTTGTAAATCAAGGGTAAAACGG
1 -TAATTCTGTAAATCGAGGGTAAAACGA
* * *
47066194 TAATTTTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
47066221 TAATTCTGTAAATCGATGGTAAAGC-A
1 TAATTCTGTAAATCGAGGGTAAAACGA
*
47066247 GTAATTCTGTAAATCGAGGGTAAAA-TA
1 -TAATTCTGTAAATCGAGGGTAAAACGA
* *
47066274 GTAATTCTGTAAA-CTGAGGGTAAAATGG
1 -TAATTCTGTAAATC-GAGGGTAAAACGA
*
47066302 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
* ** *
47066329 TAATTTTACAAATCGAGGGTAAATC-A
1 TAATTCTGTAAATCGAGGGTAAAACGA
* * **
47066355 GTAATTATATAAATCGAGGGTAAAATAA
1 -TAATTCTGTAAATCGAGGGTAAAACGA
*
47066383 TAATTCTATAAA-CTGAGGGTAAAACAGA
1 TAATTCTGTAAATC-GAGGGTAAAAC-GA
*
47066411 -AATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
47066437 TAATTCTATAAA-CTGAGGGTAAAACAA
1 TAATTCTGTAAATC-GAGGGTAAAACGA
* * *
47066464 TAATTTTGTAAATTGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
47066491 TAATTCTGTAAATTGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
47066518 TAATTCTGTAAATC
1 TAATTCTGTAAATC
47066532 AGGAGTACTT
Statistics
Matches: 334, Mismatches: 41, Indels: 34
0.82 0.10 0.08
Matches are distributed among these distances:
26 10 0.03
27 315 0.94
28 9 0.03
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGA
Found at i:47066206 original size:81 final size:80
Alignment explanation
Indices: 47066104--47066531 Score: 491
Period size: 81 Copynumber: 5.3 Consensus size: 80
47066094 AATATCAAGA
* * * *
47066104 GTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAACCAGTA
1 GTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAA-TGAGGGTAAAACAGTA
* *
47066169 ATTTTGTAAATCAAGG
65 ATTCTGTAAATCGAGG
* * * * *
47066185 GTAAAACGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGATGGTAAAGCAGTA
1 GTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAAT-GAGGGTAAAACAGTA
47066250 ATTCTGTAAATCGAGG
65 ATTCTGTAAATCGAGG
* * * * *
47066266 GTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGT
1 GTAAAACAGTAATTCTATAAATC-GAGGGTAAAACGATAATTCTGTAAAT-GAGGGTAAAACAGT
* **
47066330 AATTTTACAAATCGAGG
64 AATTCTGTAAATCGAGG
* * ** * *
47066347 GTAAATCAGTAATTATATAAATCGAGGGTAAAATAATAATTCTATAAACTGAGGGTAAAACAGAA
1 GTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAA-TGAGGGTAAAACAGTA
47066412 ATTCTGTAAATCGAGG
65 ATTCTGTAAATCGAGG
* * * *
47066428 GTAAAACGGTAATTCTATAAA-CTGAGGGTAAAACAATAATTTTGTAAATTGAGGGTAAAACGGT
1 GTAAAACAGTAATTCTATAAATC-GAGGGTAAAACGATAATTCTGTAAA-TGAGGGTAAAACAGT
*
47066492 AATTCTGTAAATTGAGG
64 AATTCTGTAAATCGAGG
* *
47066509 GTAAAACGGTAATTCTGTAAATC
1 GTAAAACAGTAATTCTATAAATC
47066532 AGGAGTACTT
Statistics
Matches: 297, Mismatches: 44, Indels: 11
0.84 0.12 0.03
Matches are distributed among these distances:
80 3 0.01
81 291 0.98
82 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (80 bp):
GTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATGAGGGTAAAACAGTAA
TTCTGTAAATCGAGG
Found at i:47066549 original size:54 final size:54
Alignment explanation
Indices: 47066112--47066531 Score: 481
Period size: 54 Copynumber: 7.8 Consensus size: 54
47066102 GAGTAAAATA
* * *
47066112 GTAATTCTGTAAATCGAGGGTAAAAC-GATAATTTTGTAAA-CTGAGGGTAAACCA
1 GTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATC-GAGGGTAAAACG
* * * * *
47066166 GTAATTTTGTAAATCAAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * **
47066220 GTAATTCTGTAAATCGATGGTAAAGCAGTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
**
47066274 GTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* ** * * * **
47066328 GTAATTTTACAAATCGAGGGTAAATCAGTAATTATATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * *
47066382 ATAATTCTATAAA-CTGAGGGTAAAACAGAAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
47066436 GTAATTCTATAAA-CTGAGGGTAAAACAATAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* *
47066490 GTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATC
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC
47066532 AGGAGTACTT
Statistics
Matches: 310, Mismatches: 50, Indels: 12
0.83 0.13 0.03
Matches are distributed among these distances:
53 2 0.01
54 305 0.98
55 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:47068549 original size:30 final size:29
Alignment explanation
Indices: 47068513--47068641 Score: 136
Period size: 30 Copynumber: 4.3 Consensus size: 29
47068503 AAGAAACATT
* * *
47068513 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
47068543 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
47068573 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
*
47068603 ATCAGAATTAGGTGACAGAATCAGAATCAGTA
1 ATCAGAATT--GTAACAGAATCAGAATCAG-A
47068635 A-CAGAAT
1 ATCAGAAT
47068642 CAGAATCAGA
Statistics
Matches: 86, Mismatches: 7, Indels: 11
0.83 0.07 0.11
Matches are distributed among these distances:
29 1 0.01
30 55 0.64
31 28 0.33
32 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:47068625 original size:79 final size:79
Alignment explanation
Indices: 47068539--47068710 Score: 308
Period size: 79 Copynumber: 2.2 Consensus size: 79
47068529 AAATGAGAAT
47068539 CAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAA
*
47068604 TCAGAATTAGGTGA
66 TCAGAATTACGTGA
* *
47068618 CAGAATCAGAATCAGTAACAGAATCAGAATCAGAATTAGTATTAGTAACAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAA
47068683 TCAGAATTACGTGA
66 TCAGAATTACGTGA
*
47068697 TAGAATCAGAATCA
1 CAGAATCAGAATCA
47068711 AAATGTGAAT
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 89 1.00
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (79 bp):
CAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAA
TCAGAATTACGTGA
Found at i:47068665 original size:30 final size:30
Alignment explanation
Indices: 47068618--47068710 Score: 132
Period size: 30 Copynumber: 3.1 Consensus size: 30
47068608 AATTAGGTGA
*
47068618 CAGAATCAGAATCAGTAACAGAATCAGAAT
1 CAGAATCAGAATTAGTAACAGAATCAGAAT
* *
47068648 CAGAATTAGTATTAGTAACAGAATCAGAAT
1 CAGAATCAGAATTAGTAACAGAATCAGAAT
* *
47068678 CAGAATCAGAATTACGTGATAGAATCAGAAT
1 CAGAATCAGAATTA-GTAACAGAATCAGAAT
47068709 CA
1 CA
47068711 AAATGTGAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 39 0.71
31 16 0.29
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.22
Consensus pattern (30 bp):
CAGAATCAGAATTAGTAACAGAATCAGAAT
Found at i:47068709 original size:6 final size:6
Alignment explanation
Indices: 47068534--47068689 Score: 153
Period size: 6 Copynumber: 25.8 Consensus size: 6
47068524 AACCAAAATG
*
47068534 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
47068582 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
47068631 AGTAA-C AGAATC AGAATC AGAATT AGTATT AGTAA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
47068679 AGAATC AGAAT
1 AGAATC AGAAT
47068690 TACGTGATAG
Statistics
Matches: 127, Mismatches: 10, Indels: 26
0.78 0.06 0.16
Matches are distributed among these distances:
5 10 0.08
6 107 0.84
7 8 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:47068869 original size:27 final size:26
Alignment explanation
Indices: 47068832--47068887 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
47068822 AGCATGGCTG
*
47068832 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
47068858 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
47068885 CCA
1 CCA
47068888 TAATCAGAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:47068895 original size:27 final size:27
Alignment explanation
Indices: 47068837--47068905 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
47068827 GGCTGCCAGA
* * * *
47068837 ACAGATATCGTGACAGAGTCACCAGAT
1 ACAGATATTGTGGCAGAGCCACCAAAT
47068864 ACAGATATTGTGGCAGAGCCACCATAAT
1 ACAGATATTGTGGCAGAGCCACCA-AAT
* *
47068892 -CAGAGAATGTGGCA
1 ACAGATATTGTGGCA
47068906 AACCCACCTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 33 0.94
28 2 0.06
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.19
Consensus pattern (27 bp):
ACAGATATTGTGGCAGAGCCACCAAAT
Found at i:47069281 original size:27 final size:26
Alignment explanation
Indices: 47069216--47069298 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
47069206 TCGATCGGTC
* * *
47069216 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
*
47069242 ATACAGATATTGTGGCAGAGGCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
47069269 AACAAATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
47069296 AAC
1 AAC
47069299 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.14
27 42 0.86
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:47069516 original size:27 final size:28
Alignment explanation
Indices: 47069454--47069517 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
47069444 CAGTCACATG
*
47069454 CCCACAAGGGCAAAACAGTCATTTAACA
1 CCCACAAGGGCAAAACAGTAATTTAACA
* ** *
47069482 CCC-TAAGGGCAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAACAGTAATTTAACA
47069508 CCCACAAGGG
1 CCCACAAGGG
47069518 TATCTTGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.17
Consensus pattern (28 bp):
CCCACAAGGGCAAAACAGTAATTTAACA
Found at i:47069554 original size:54 final size:54
Alignment explanation
Indices: 47069496--47069692 Score: 261
Period size: 54 Copynumber: 3.6 Consensus size: 54
47069486 AAGGGCAAAA
* *
47069496 TGGTAATTTTACCCCACAAGGGTATCTT-GGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTAT-TTCGGTAATTCTACCCTACAGGGGTATTT
* *
47069550 TGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
* * * *
47069604 TGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
* * * * *
47069658 CGGAAATTCTACCCTACAGGGGAATTTCAGTAATT
1 TGGTAATTCTACCCTACAAGGGTATTTCGGTAATT
47069693 GCACAATCAA
Statistics
Matches: 126, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 2 0.02
54 124 0.98
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
Found at i:47069685 original size:27 final size:27
Alignment explanation
Indices: 47069497--47069692 Score: 232
Period size: 27 Copynumber: 7.3 Consensus size: 27
47069487 AGGGCAAAAT
* * *
47069497 GGTAATTTTACCCCACAAGGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
*
47069524 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
47069551 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
47069578 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
47069605 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
47069632 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
47069659 GGAAATTCTACCCTACAGGGGAATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47069686 AGTAATT
1 GGTAATT
47069693 GCACAATCAA
Statistics
Matches: 144, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 2 0.01
27 142 0.99
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:47069727 original size:27 final size:27
Alignment explanation
Indices: 47069697--47070376 Score: 838
Period size: 27 Copynumber: 25.2 Consensus size: 27
47069687 GTAATTGCAC
* *
47069697 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
47069724 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
47069751 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
47069778 AATCGAGGGTAAAGCAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
47069805 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
47069832 AA-CTGAGGGTAAAATGGTAATTCTGGA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
47069859 AATCGAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
47069886 AATCGAGGGTAAAACGGTAATTATATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
47069913 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
47069940 AA-CTGAGGGTAAAACGGAAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
47069967 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
47069994 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
47070021 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
47070048 AATCGAAGGTAAAACGATAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
47070075 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
47070102 AACCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
47070129 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
47070156 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
47070183 AATCGAAGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
47070210 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
47070237 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
47070264 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
47070291 AA-CTGAGGGTAAAACAGTAATTCTGGA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** *
47070318 AA-CTGAGGGTAAAATAGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
47070345 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
47070372 AATCG
1 AATCG
47070377 GGAGTACTTT
Statistics
Matches: 580, Mismatches: 61, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
26 6 0.01
27 568 0.98
28 6 0.01
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:47074861 original size:10 final size:10
Alignment explanation
Indices: 47074845--47074902 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
47074835 CAACTCCGAC
47074845 CAGCTCAATT
1 CAGCTCAATT
* *
47074855 GAGCTCATTT
1 CAGCTCAATT
47074865 CAGCTCAA-T
1 CAGCTCAATT
47074874 CAAGCTCAATT
1 C-AGCTCAATT
*
47074885 TAGCTACAATT
1 CAGCT-CAATT
47074896 CAGCTCA
1 CAGCTCA
47074903 TTTATTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 2 0.05
10 27 0.69
11 10 0.26
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.29
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:47080042 original size:46 final size:45
Alignment explanation
Indices: 47079992--47080164 Score: 161
Period size: 46 Copynumber: 3.8 Consensus size: 45
47079982 TTGGGCATCC
* *
47079992 GAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCT
* *** * *
47080038 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCT
1 GAACTCATTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCT
* * * *
47080085 GACCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCT
*
47080131 GAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
47080165 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 63 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCT
Found at i:47080144 original size:93 final size:93
Alignment explanation
Indices: 47079985--47080156 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
47079975 AGGATGTTTG
* * * * * *
47079985 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
47080050 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
47080078 GGCATCTGACCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
47080143 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
47080157 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:47080328 original size:20 final size:20
Alignment explanation
Indices: 47080305--47080358 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
47080295 AGTTTTTCCC
*
47080305 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
47080325 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
47080345 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
47080359 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:47080340 original size:30 final size:30
Alignment explanation
Indices: 47080305--47080378 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
47080295 AGTTTTTCCC
47080305 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
47080335 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
47080365 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
47080379 TGACTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Done.