Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 143 of 343
Found at i:47457322 original size:15 final size:15
Alignment explanation
Indices: 47457302--47457336 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
47457292 CATCTTCGGG
47457302 AGATATGCCGGCGGT
1 AGATATGCCGGCGGT
47457317 AGATATGCCGGCGGT
1 AGATATGCCGGCGGT
47457332 AGATA
1 AGATA
47457337 CACCGGTACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.37, T:0.20
Consensus pattern (15 bp):
AGATATGCCGGCGGT
Found at i:47457342 original size:15 final size:15
Alignment explanation
Indices: 47457309--47457342 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
47457299 GGGAGATATG
**
47457309 CCGGCGGTAGATATG
1 CCGGCGGTAGATACA
47457324 CCGGCGGTAGATACA
1 CCGGCGGTAGATACA
47457339 CCGG
1 CCGG
47457343 TACCATCGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.26, G:0.38, T:0.15
Consensus pattern (15 bp):
CCGGCGGTAGATACA
Found at i:47463756 original size:27 final size:27
Alignment explanation
Indices: 47463716--47463827 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
47463706 AGGAAGCGTC
* *
47463716 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
47463743 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
47463770 CTGGTAGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
47463798 CTAGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
47463824 CTGG
1 CTGG
47463828 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 7 0.10
27 47 0.67
28 16 0.23
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:47463822 original size:54 final size:54
Alignment explanation
Indices: 47463716--47463836 Score: 136
Period size: 54 Copynumber: 2.2 Consensus size: 54
47463706 AGGAAGCGTC
* * * * *
47463716 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTAGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
* * *
47463770 CTGGTAGCTCTGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCTGTT
1 CTGGTAGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTGTT
* *
47463824 CTGGCAGCCATGC
1 CTGGTAGCTATGC
47463837 TGCATAATTC
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 38 0.69
55 17 0.31
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.36
Consensus pattern (54 bp):
CTGGTAGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
Found at i:47465364 original size:18 final size:18
Alignment explanation
Indices: 47465324--47465366 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
47465314 ATGCCAAAAA
*
47465324 TACTT-AGACATATTAAT
1 TACTTAAGACACATTAAT
47465341 TAACTTAAGACACATTAAT
1 T-ACTTAAGACACATTAAT
47465360 TACTTAA
1 TACTTAA
47465367 ACTAAATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 10 0.43
19 12 0.52
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (18 bp):
TACTTAAGACACATTAAT
Found at i:47465375 original size:18 final size:19
Alignment explanation
Indices: 47465325--47465376 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
47465315 TGCCAAAAAT
*
47465325 ACTT-AGACATATTAATTA
1 ACTTAAGACAAATTAATTA
*
47465343 ACTTAAGACACATTAATT-
1 ACTTAAGACAAATTAATTA
47465361 ACTTAA-ACTAAATTAA
1 ACTTAAGAC-AAATTAA
47465377 CTAAATAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 2 0.07
18 16 0.53
19 12 0.40
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (19 bp):
ACTTAAGACAAATTAATTA
Found at i:47469808 original size:42 final size:43
Alignment explanation
Indices: 47469749--47469842 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
47469739 TGGTTTATGA
* * * *
47469749 GTAAGACCATGTCTGGGAT-GTTGGCATC-GTACTTGATTTCGT
1 GTAAGACCATGTATGGGATAG-TGGCATCAATACTTGATTACAT
*
47469791 GTAAGACCATGTATGGGATAGTGGCATCAATATTTGATTACAT
1 GTAAGACCATGTATGGGATAGTGGCATCAATACTTGATTACAT
47469834 GTAAGACCA
1 GTAAGACCA
47469843 CATTTGGGAC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 25 0.56
43 20 0.44
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.32
Consensus pattern (43 bp):
GTAAGACCATGTATGGGATAGTGGCATCAATACTTGATTACAT
Found at i:47474127 original size:32 final size:33
Alignment explanation
Indices: 47474081--47474144 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
47474071 AACAGTGGGT
47474081 ACTGGGCCGAAGCCCC-TTTCAGA-ATACAGTAA
1 ACTGGGCCGAAGCCCCTTTTCAGATA-ACAGTAA
**
47474113 ACTGGGCCTTAGCCCCTTTTCAGATAACAGTA
1 ACTGGGCCGAAGCCCCTTTTCAGATAACAGTA
47474145 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 14 0.50
33 13 0.46
34 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCCTTTTCAGATAACAGTAA
Found at i:47476150 original size:3 final size:3
Alignment explanation
Indices: 47476142--47476176 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
47476132 AAACATACGA
* *
47476142 AAT AAT AAT AAT AAT AAT AAT AAT TAT AAT GAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
47476177 CATCCGAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:47478174 original size:32 final size:33
Alignment explanation
Indices: 47478128--47478191 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
47478118 AACAGCGGGT
47478128 ACTGGGCCGAAG-CCCTTTTCAGA-ACACAGTAA
1 ACTGGGCCGAAGCCCCTTTTCAGATA-ACAGTAA
**
47478160 ACTGGGCCTTAGCCCCTTTTCAGATAACAGTA
1 ACTGGGCCGAAGCCCCTTTTCAGATAACAGTA
47478192 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 10 0.36
33 17 0.61
34 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCCTTTTCAGATAACAGTAA
Found at i:47502914 original size:50 final size:50
Alignment explanation
Indices: 47502787--47502983 Score: 243
Period size: 50 Copynumber: 3.9 Consensus size: 50
47502777 TAGCCAAAGC
* * * *
47502787 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
* *
47502836 TATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
* * * ***
47502886 CATCTGATACACGTAGTAGCCTGTACTTAGTACTACACACGTGATGGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-T
* * *
47502937 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
47502984 CACAATAGAT
Statistics
Matches: 123, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
49 41 0.33
50 44 0.36
51 38 0.31
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (50 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
Found at i:47502969 original size:101 final size:99
Alignment explanation
Indices: 47502800--47502983 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
47502790 CTGGTACGCA
* * **
47502800 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
47502865 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* * ** *
47502899 TAGTAGCCTGTACTTAGTACTACACACGTGATGGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACT
47502964 TAGTACTACACACGTGACCT
64 TAGTACTACACACGTGACCT
47502984 CACAATAGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 28 0.38
100 2 0.03
101 44 0.59
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:47510973 original size:22 final size:22
Alignment explanation
Indices: 47510948--47510994 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
47510938 AATATATGCT
*
47510948 TTGGTATGATTTTGGTTTA-GAA
1 TTGGTATGA-TTTGGTTGATGAA
47510970 TTGGTATGATTTGGTTGATGAA
1 TTGGTATGATTTGGTTGATGAA
47510992 TTG
1 TTG
47510995 AGAATGGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
TTGGTATGATTTGGTTGATGAA
Found at i:47512983 original size:46 final size:46
Alignment explanation
Indices: 47512930--47513112 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
47512920 TATATATACA
* * *
47512930 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * * *
47512976 CATCTCATACACGTTTCGCATTAGCCATTGGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
47513022 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
*
47513068 CATCTCATACACATTTCACATTAGCCATTCAGCTTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
47513113 ATACACTTCC
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 126 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:47513143 original size:47 final size:47
Alignment explanation
Indices: 47513083--47513417 Score: 492
Period size: 47 Copynumber: 7.1 Consensus size: 47
47513073 CATACACATT
* * * * * *
47513083 TCACATTAGCCATTCAGCTTTACCACATATATACACT-TCCACGTTCA
1 TCACATTGGCCATTCAGCCTTATCACATATATGCA-TGTTCACATTCA
*
47513130 TCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCA
* *
47513177 TCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCA
1 TCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCA
*
47513224 TCACATTGGCCATTCAGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCA
* *
47513271 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCA
47513318 TCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCA
* * * * **
47513365 TCACATTGGCCATTCGGCCTTATCTCATTTATACACATTCACATTCA
1 TCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCA
47513412 TCACAT
1 TCACAT
47513418 AAAATCCTAA
Statistics
Matches: 266, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 265 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCA
Found at i:47513297 original size:22 final size:21
Alignment explanation
Indices: 47513129--47513345 Score: 66
Period size: 22 Copynumber: 9.3 Consensus size: 21
47513119 TTCCACGTTC
47513129 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTC-GCCTT
* * *
47513151 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCA--TTCGCCTT
47513175 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTC-GCCTT
* * * *
47513198 ATCACATATATGCATATTCACATT
1 ATCACAT-T-GGC-CATTCGCCTT
47513222 CATCACATTGGCCATTCAGCCTT
1 -ATCACATTGGCCATTC-GCCTT
* *
47513245 ATCACACATAT-G-CATGTTCACATT
1 AT--CACAT-TGGCCA--TTCGCCTT
47513269 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTC-GCCTT
* *
47513292 ATCACACATAT-G-CATGTTCACATT
1 AT--CACAT-TGGCCA--TTCGCCTT
47513316 CATCACATTGGCCATTCAGCCTT
1 -ATCACATTGGCCATTC-GCCTT
47513339 ATCACAT
1 ATCACAT
47513346 ATATGCATGT
Statistics
Matches: 143, Mismatches: 22, Indels: 60
0.64 0.10 0.27
Matches are distributed among these distances:
22 40 0.28
23 35 0.24
24 35 0.24
25 33 0.23
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (21 bp):
ATCACATTGGCCATTCGCCTT
Found at i:47524047 original size:70 final size:70
Alignment explanation
Indices: 47523959--47524125 Score: 257
Period size: 70 Copynumber: 2.4 Consensus size: 70
47523949 GACTATATGC
*
47523959 GGCACTTAGTGT-TCGAAACATTGAGTAAGGCACTTAGTGTGTAG-AATTATAATAGCTTCGGCT
1 GGCACTTAGTGTGT-GAAACATCGAGTAAGGCACTTAGTGTG-AGAAATTATAATAGCTTCGGCT
47524022 ATGCGAT
64 ATGCGAT
* *
47524029 GGCATTTAGTGTGTGAAACATCGAGTAAGGCACTTAGTGTGCGAAATTATAATAGCTTCGGCTAT
1 GGCACTTAGTGTGTGAAACATCGAGTAAGGCACTTAGTGTGAGAAATTATAATAGCTTCGGCTAT
47524094 GCGAT
66 GCGAT
* *
47524099 GGCACTTAGTGTGCGAAACATCAAGTA
1 GGCACTTAGTGTGTGAAACATCGAGTA
47524126 TTCGACAGTG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
69 1 0.01
70 87 0.98
71 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (70 bp):
GGCACTTAGTGTGTGAAACATCGAGTAAGGCACTTAGTGTGAGAAATTATAATAGCTTCGGCTAT
GCGAT
Found at i:47529287 original size:93 final size:93
Alignment explanation
Indices: 47529178--47529348 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
47529168 GCCCATAAGT
* *
47529178 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAACTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCA
47529242 ACAAGCTCGGATGCCTAGTTACATCTCTC
65 ACAAGCTCGGATGCCTAGTTACATCTCTC
* *
47529271 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCAA
* *
47529336 CGAGTTCGGATGC
66 CAAGCTCGGATGC
47529349 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCTC
Found at i:47529340 original size:46 final size:46
Alignment explanation
Indices: 47529170--47529345 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
47529160 TGTAACCCGC
* * *
47529170 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCAT
* * * * *
47529216 CCATAACTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
47529266 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
47529309 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
47529346 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
45 1 0.01
46 60 0.57
47 27 0.25
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:47531755 original size:15 final size:15
Alignment explanation
Indices: 47531737--47531798 Score: 74
Period size: 15 Copynumber: 4.2 Consensus size: 15
47531727 AAGAAAACGA
47531737 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
47531752 ATAAAGAAA-CC-AG
1 ATAAAGAAATCCAAG
* *
47531765 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
47531781 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
47531796 ATA
1 ATA
47531799 CGATACTATG
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
13 2 0.05
14 10 0.26
15 26 0.67
16 1 0.03
ACGTcount: A:0.58, C:0.15, G:0.16, T:0.11
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:47531770 original size:29 final size:28
Alignment explanation
Indices: 47531727--47531791 Score: 94
Period size: 29 Copynumber: 2.3 Consensus size: 28
47531717 CAAAGATAAC
*
47531727 AAGAAAACGAATAAAGAAATCCAAGATA
1 AAGAAACCGAATAAAGAAATCCAAGATA
* *
47531755 AAGAAACCAGAATAAAGAGATCCAGGATA
1 AAGAAACC-GAATAAAGAAATCCAAGATA
47531784 AAGAAACC
1 AAGAAACC
47531792 CAAGATACGA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 7 0.21
29 26 0.79
ACGTcount: A:0.60, C:0.14, G:0.17, T:0.09
Consensus pattern (28 bp):
AAGAAACCGAATAAAGAAATCCAAGATA
Found at i:47534757 original size:46 final size:45
Alignment explanation
Indices: 47534690--47534863 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
47534680 TGTAACCCGC
*
47534690 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
* *
47534736 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTAGCAT
* *** * * *
47534782 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTC-GACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
*
47534828 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
47534864 ATGCCAACCA
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
44 1 0.01
45 28 0.26
46 48 0.45
47 27 0.25
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGCAT
Found at i:47534856 original size:92 final size:93
Alignment explanation
Indices: 47534698--47534868 Score: 290
Period size: 92 Copynumber: 1.8 Consensus size: 93
47534688 GCCCATAAGT
* *
47534698 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
47534763 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
47534791 GAACTCGGACTCAACTCAACGAGTTC-GACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
47534855 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
47534869 AACCATCCTA
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 48 0.66
93 25 0.34
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:47538256 original size:21 final size:22
Alignment explanation
Indices: 47538232--47538275 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
47538222 GCAAATACGT
47538232 TTGGCACACACCCATA-ATAGG
1 TTGGCACACACCCATATATAGG
* *
47538253 TTGGCACAGAGCCATATATAGG
1 TTGGCACACACCCATATATAGG
47538275 T
1 T
47538276 CGGCGCAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (22 bp):
TTGGCACACACCCATATATAGG
Found at i:47538287 original size:22 final size:21
Alignment explanation
Indices: 47538234--47538292 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 21
47538224 AAATACGTTT
* * *
47538234 GGCACACACCCATAATAGGTT
1 GGCACAAAGCCATAATAGGTC
*
47538255 GGCACAGAGCCATATATAGGTC
1 GGCACAAAGCCATA-ATAGGTC
*
47538277 GGCGCAAAGCCATAAT
1 GGCACAAAGCCATAAT
47538293 CAGAATAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 14 0.44
22 18 0.56
ACGTcount: A:0.34, C:0.25, G:0.24, T:0.17
Consensus pattern (21 bp):
GGCACAAAGCCATAATAGGTC
Found at i:47538500 original size:41 final size:41
Alignment explanation
Indices: 47538442--47538561 Score: 168
Period size: 41 Copynumber: 2.9 Consensus size: 41
47538432 AGCCACCGGT
* *
47538442 GGATCCACGATCGTCAAGCAACCATGCGATCCTTAATTGGC
1 GGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATTGAC
* * * *
47538483 GGATCCACGGTCATCAAGCAACCATGCGATCCTCAATCGAT
1 GGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATTGAC
* *
47538524 GGATCCACGGTTGTCAAGCAACCATGAGATCCTTAATT
1 GGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATT
47538562 TCTTCCTCCA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
GGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATTGAC
Found at i:47538948 original size:26 final size:27
Alignment explanation
Indices: 47538797--47539190 Score: 309
Period size: 27 Copynumber: 14.7 Consensus size: 27
47538787 TTTCACCCTA
* * * * *
47538797 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * **
47538824 CAAGGGTATTTCGATAATTTTGCAAGC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * **
47538851 CAATGGTATTTCT-ATAATTTTTAAAAGT
1 CAAGGGTATTT-TGGTAATTTTGCAAA-T
*
47538879 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTGCAAAT
*
47538906 CAAGGGTATTTTTGTAATTTTGCAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
*
47538933 C-AGGGTATTTTGGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
47538959 CAGGGGTATTTTGATAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * * *
47538986 CGAGGGTATTTTGATAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * **
47539013 CAAGGGTATTTCGGT-ATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
47539039 CGAGGGTATTTCGGTAATTCAT--AAAT
1 CAAGGGTATTTTGGTAATT-TTGCAAAT
* *
47539065 CAAGGGTATTTTGTTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* *
47539091 CCAGGGATATTTTGGTAATTTTGCTAAT
1 CAAGGG-TATTTTGGTAATTTTGCAAAT
* * *
47539119 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
** * *
47539146 CAAGGGTA-TTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
*
47539172 CAAGGGTATTTTAGTAATT
1 CAAGGGTATTTTGGTAATT
47539191 CTACCCTACA
Statistics
Matches: 306, Mismatches: 50, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
25 1 0.00
26 96 0.31
27 181 0.59
28 28 0.09
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGCAAAT
Found at i:47538959 original size:53 final size:54
Alignment explanation
Indices: 47538797--47539190 Score: 304
Period size: 53 Copynumber: 7.4 Consensus size: 54
47538787 TTTCACCCTA
* * * * * * * **
47538797 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCGATAATTTTGCAAGC
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAAT
* * * *
47538851 CAATGGTATTTCTATAATTTTTA-AAAGTCAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTTTTGTAA-TTTTACAAA-TCAAGGGTATTT-TGGTAATTTTGCAAAT
* *
47538906 CAAGGGTATTTTTGTAATTTTGCAAATC-AGGGTATTTTGGTAATTTTCCAAAT
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAAT
* * * * *
47538959 CAGGGGTA-TTTTGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAGT
1 CAAGGGTATTTTTG-TAATTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAAT
** ** * * *
47539013 CAAGGGTATTTCGGT-ATTTTACAGGTCGAGGGTATTTCGGTAATTCAT--AAAT
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGGTAATT-TTGCAAAT
* *
47539065 CAAGGGTA-TTTTGTTAATTTTACAAA-CCAGGGATATTTTGGTAATTTTGCTAAT
1 CAAGGGTATTTTTG-TAATTTTACAAATCAAGGG-TATTTTGGTAATTTTGCAAAT
* * ** * ** * *
47539119 CGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAAT
*
47539172 CAAGGGTATTTTAGTAATT
1 CAAGGGTATTTTTGTAATT
47539191 CTACCCTACA
Statistics
Matches: 271, Mismatches: 53, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
51 3 0.01
52 24 0.09
53 117 0.43
54 74 0.27
55 53 0.20
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAAT
Found at i:47539212 original size:27 final size:26
Alignment explanation
Indices: 47539182--47539279 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 26
47539172 CAAGGGTATT
47539182 TTAGTAATTCTACCCTACAGGGGCATC
1 TTAGTAATTCTA-CCTACAGGGGCATC
*
47539209 TTAGTAATT-T-CCTACAGTGGCATC
1 TTAGTAATTCTACCTACAGGGGCATC
*
47539233 TCAGTAATTCTATCCTACAGGGGCAT-
1 TTAGTAATTCTA-CCTACAGGGGCATC
*
47539259 TTCAGTAATACTAGCCTACAG
1 TT-AGTAATTCTA-CCTACAG
47539280 ATATGAGATT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
24 21 0.34
25 1 0.02
26 2 0.03
27 37 0.61
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
TTAGTAATTCTACCTACAGGGGCATC
Found at i:47542596 original size:47 final size:49
Alignment explanation
Indices: 47542478--47542654 Score: 189
Period size: 44 Copynumber: 3.8 Consensus size: 49
47542468 TGTAACCCGC
* * *
47542478 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC--A-G--GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
47542522 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
47542572 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
47542615 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
47542655 TCAATCATCC
Statistics
Matches: 110, Mismatches: 9, Indels: 23
0.77 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 34 0.31
45 2 0.02
46 30 0.27
47 30 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:47542642 original size:93 final size:91
Alignment explanation
Indices: 47542485--47542654 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 91
47542475 CGCCCATAAG
47542485 CGAACTCGGACTCAACTCAACGAGCTCAGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 CGAACTCGGACTCAACTCAACGAGCTCAGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
47542550 GAGTTCGGATGCCTAGTTACATCTCA
66 GAGTTCGGATGCCTAGTTACATCTCA
*
47542576 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGG---TTCGCATCCATAAGTGAACTCGGACTCAACTC
47542640 AACGAGTTCGGATGC
63 AACGAGTTCGGATGC
47542655 TCAATCATCC
Statistics
Matches: 75, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
90 2 0.03
91 26 0.35
93 47 0.63
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (91 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCA
Found at i:47542670 original size:46 final size:46
Alignment explanation
Indices: 47542481--47542670 Score: 164
Period size: 46 Copynumber: 4.2 Consensus size: 46
47542471 AACCCGCCCA
* * *
47542481 TAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-T--TC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGCTCATCATCC
47542524 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT-C
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A--T-CATCC
* * *** *
47542573 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
47542617 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAATCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ATCATCC
47542665 T-AGTGA
1 TAAGTGA
47542671 CATGTCACTT
Statistics
Matches: 117, Mismatches: 15, Indels: 26
0.74 0.09 0.16
Matches are distributed among these distances:
43 5 0.04
44 31 0.26
45 3 0.03
46 36 0.31
47 30 0.26
48 8 0.07
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
Found at i:47550173 original size:93 final size:93
Alignment explanation
Indices: 47550044--47550215 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
47550034 CGCCCATAAG
* ** *
47550044 CGAACTCGGACTCAACTCAATGAGCTTAGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTTAGGCATTCGCATCAATAAGTGAACTCGGACTCAACTCA
47550109 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
47550137 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCAATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTTAGG-CATTCGCATCAATAAGTGAACTCGGACTCAACTC
47550201 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
47550216 TCAATCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTTAGGCATTCGCATCAATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:47550205 original size:46 final size:45
Alignment explanation
Indices: 47550038--47550212 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
47550028 GTAACCCGCC
* * **
47550038 CATAAGCGAACTCGGACTCAACTCAATGAGCTTAGG-TGTTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* *
47550083 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 -CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
47550133 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
47550176 CAATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 C-ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
47550213 TGCTCAATCA
Statistics
Matches: 108, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 6 0.06
46 57 0.53
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (45 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:47560096 original size:39 final size:40
Alignment explanation
Indices: 47560011--47560096 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
47560001 GGACTAAGAT
* *
47560011 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAATC
47560051 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAATC
47560090 CCGAAGG
1 CCGAAGG
47560097 TACTTGGGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
39 15 0.35
40 26 0.60
41 2 0.05
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAATC
Found at i:47563795 original size:70 final size:70
Alignment explanation
Indices: 47563648--47563808 Score: 198
Period size: 70 Copynumber: 2.3 Consensus size: 70
47563638 CTATATATAA
* ** ** *
47563648 CACTTAGTGTGGGAAACATTAAGTAAGGCACTTAGTGTGTAGAATTATAATAACTTCGGCTATGC
1 CACTTAGTGTGCGAAACATCGAGTAACACACTTAGTGTGCAGAATTATAATAACTTCGGCTATGC
*
47563713 GATGG
66 AATGG
* * *
47563718 CATTTAGTGTGCGAAACATCGAGTAACACACTTAGTGTGCGGAATTATAATAGCTTCGGCTATGC
1 CACTTAGTGTGCGAAACATCGAGTAACACACTTAGTGTGCAGAATTATAATAACTTCGGCTATGC
47563783 AATGG
66 AATGG
* *
47563788 CGCTTAGT-TCGCAAAACATCG
1 CACTTAGTGT-GCGAAACATCG
47563809 GGTATTCGAT
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
69 1 0.01
70 76 0.99
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (70 bp):
CACTTAGTGTGCGAAACATCGAGTAACACACTTAGTGTGCAGAATTATAATAACTTCGGCTATGC
AATGG
Found at i:47572783 original size:46 final size:47
Alignment explanation
Indices: 47572730--47572994 Score: 260
Period size: 46 Copynumber: 5.7 Consensus size: 47
47572720 TGTGTGTGCT
47572730 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATTATGAGAGCC
* * * * *
47572776 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CATTGA-GACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGATTATGAGAGCC
* * *
47572824 AGTGTAAGACATGTCTGGGACATGCGTCGGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATTATG-AGAGCC
* * * *
47572870 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-CAT--GTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATTATGAGAGCC
* *
47572914 AGTGTAAGACATGTCTGGGACATGCAACGG-CACGGATATGTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-GAT-TATGAGAGCC
*
47572962 AATGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
47572995 ATTATACCCT
Statistics
Matches: 179, Mismatches: 25, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
43 2 0.01
44 33 0.18
46 59 0.33
47 30 0.17
48 34 0.19
49 15 0.08
50 6 0.03
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATTATGAGAGCC
Found at i:47572994 original size:140 final size:139
Alignment explanation
Indices: 47572730--47572994 Score: 331
Period size: 140 Copynumber: 1.9 Consensus size: 139
47572720 TGTGTGTGCT
* *
47572730 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATCAT-AGAGCCAGTGTAAGACCATGTCTGG
* ** * * *
47572795 GACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCGTCGGCCTCGA
65 GACATGGCAACGGCACGGAGACGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGA
47572860 GATGTAAGCC
130 GATGTAAGCC
* * *
47572870 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-CAT-GTGCTAGTGTAAGA-CATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATCATAGAGCCAGTGTAAGACCATGTCTGG
* *
47572932 GACAT-GCAACGGCACGGATATGTGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGC
65 GACATGGCAACGGCACGGAGA--CGAGAGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGGC
47572995 ATTATACCCT
Statistics
Matches: 107, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
136 11 0.10
137 13 0.12
138 26 0.24
139 14 0.13
140 42 0.39
141 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (139 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATCATAGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCAACGGCACGGAGACGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAG
ATGTAAGCC
Found at i:47576652 original size:46 final size:45
Alignment explanation
Indices: 47576585--47576758 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
47576575 TGTAACCCGC
*
47576585 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
47576631 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
47576677 ACATCTCTCGAACTCGGACTCAACTCAAC-AGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
* *
47576723 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
47576759 ATGCCCAAAC
Statistics
Matches: 104, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 21 0.20
46 56 0.54
47 19 0.18
48 3 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:47576759 original size:92 final size:93
Alignment explanation
Indices: 47576593--47576763 Score: 265
Period size: 92 Copynumber: 1.8 Consensus size: 93
47576583 GCCCATAAGT
* *
47576593 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
47576658 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
47576686 GAACTCGGACTCAACTCAAC-AGTTC-GGACATTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
47576749 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
47576764 CAAACATCCT
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
91 2 0.03
92 49 0.69
93 20 0.28
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:47579193 original size:30 final size:30
Alignment explanation
Indices: 47579149--47579237 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
47579139 CAAAGATAAT
47579149 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
47579178 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
47579208 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
47579238 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:47579197 original size:15 final size:15
Alignment explanation
Indices: 47579149--47579228 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
47579139 CAAAGATAAT
*
47579149 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
47579163 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
47579178 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
47579193 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
47579208 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
47579223 AAGAAA
1 AAGAAA
47579229 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:47579237 original size:15 final size:15
Alignment explanation
Indices: 47579160--47579237 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
47579150 AGAAAACCGA
47579160 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
47579175 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
47579189 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
47579204 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
47579220 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
47579235 ATA
1 ATA
47579238 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:47590769 original size:14 final size:13
Alignment explanation
Indices: 47590747--47590785 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
47590737 TGTTCTTTCC
47590747 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
*
47590760 TTTTCGTTTCTTTT
1 CTTTC-TTTCTTTT
47590774 CTTTC-TTCTTTT
1 CTTTCTTTCTTTT
47590786 AACTCCTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 7 0.30
13 4 0.17
14 12 0.52
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.77
Consensus pattern (13 bp):
CTTTCTTTCTTTT
Found at i:47594886 original size:87 final size:87
Alignment explanation
Indices: 47594740--47594904 Score: 244
Period size: 87 Copynumber: 1.9 Consensus size: 87
47594730 AGGCTAAGTG
* * *
47594740 TAACACCCCTAACTCGTATCCATCGCTGGAATAGGGTTACGGAGCATTATCGAACTTATAACACA
1 TAACACCCCTAACCCGTATCCATAGCTGGAAGAGGGTTACGGAGCATTATCGAACTTATAACACA
*
47594805 ATTGAACATACATAAATAAATA
66 ATCGAACATACATAAATAAATA
*
47594827 TAACACCCCTAACCCGTATCCATTATC-GGAAGAGGGTTACGGAGCATTA-CTGAACTTATAACA
1 TAACACCCCTAACCCGTATCCA-TAGCTGGAAGAGGGTTACGGAGCATTATC-GAACTTATAACA
*
47594890 TAATCGAACATACAT
64 CAATCGAACATACAT
47594905 TTCACATAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
86 1 0.01
87 67 0.96
88 2 0.03
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (87 bp):
TAACACCCCTAACCCGTATCCATAGCTGGAAGAGGGTTACGGAGCATTATCGAACTTATAACACA
ATCGAACATACATAAATAAATA
Found at i:47599915 original size:27 final size:26
Alignment explanation
Indices: 47599867--47599922 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
47599857 GCGAAGCTGC
*
47599867 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
47599894 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
47599920 CAG
1 CAG
47599923 GTATATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:47600717 original size:54 final size:54
Alignment explanation
Indices: 47600659--47600772 Score: 135
Period size: 54 Copynumber: 2.1 Consensus size: 54
47600649 TTTAACACCC
47600659 TAGGGGCAAAAT-GGTAATTT-TACCCCACAAGGGTATCTT-GGTAATTCTACCCTA
1 TAGGGG-AAAATCGGT-ATTTATACCCCACAAGGGTAT-TTAGGTAATTCTACCCTA
* ** * *
47600713 TAGGGGTATTTCGGTATTTATACCCTACAAGGGTATTTAGGTAATTCTATCCTA
1 TAGGGGAAAATCGGTATTTATACCCCACAAGGGTATTTAGGTAATTCTACCCTA
47600767 TAGGGG
1 TAGGGG
47600773 TATTTCGGTA
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
53 8 0.15
54 44 0.85
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (54 bp):
TAGGGGAAAATCGGTATTTATACCCCACAAGGGTATTTAGGTAATTCTACCCTA
Found at i:47600773 original size:54 final size:53
Alignment explanation
Indices: 47600675--47600782 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 53
47600665 CAAAATGGTA
47600675 ATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTATAGGGGTATTTCGGT
1 ATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTATAGGGGTATTTCGGT
* *
47600728 ATTTATACCCTACAAGGGTAT-TTAGGTAATTCTATCCTATAGGGGTATTTCGGT
1 ATTT-TACCCCACAAGGGTATCTT-GGTAATTCTACCCTATAGGGGTATTTCGGT
47600782 A
1 A
47600783 ATTCTACAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
53 6 0.12
54 45 0.88
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (53 bp):
ATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTATAGGGGTATTTCGGT
Found at i:47600786 original size:27 final size:27
Alignment explanation
Indices: 47600671--47600789 Score: 132
Period size: 27 Copynumber: 4.4 Consensus size: 27
47600661 GGGGCAAAAT
* * * *
47600671 GGTAATTTTACCCCACAAGGGTATCTT-
1 GGTAATTCTACCCTATAGGGGTAT-TTC
47600698 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATTTC
* * * * *
47600725 GGTATTTATACCCTACAAGGGTATTTA
1 GGTAATTCTACCCTATAGGGGTATTTC
*
47600752 GGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATTTC
47600779 GGTAATTCTAC
1 GGTAATTCTAC
47600790 AACTTATCCA
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 2 0.03
27 73 0.97
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTATAGGGGTATTTC
Found at i:47601794 original size:31 final size:31
Alignment explanation
Indices: 47601751--47601814 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
47601741 CCTTTTCATA
47601751 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
47601782 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
47601813 TT
1 TT
47601815 ACGGTAAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:47602137 original size:24 final size:24
Alignment explanation
Indices: 47602007--47602199 Score: 277
Period size: 24 Copynumber: 8.0 Consensus size: 24
47601997 GCTTTATCAT
*
47602007 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
47602032 ATAACTGGGGCA-AAGCCCTCTTTTA
1 ATAACTGGGGCATAAG-CC-CTTTTA
47602057 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
47602082 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47602105 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
47602129 ATAATTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47602153 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
47602177 ATAATTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
47602200 GCACTTCCTC
Statistics
Matches: 158, Mismatches: 4, Indels: 13
0.90 0.02 0.07
Matches are distributed among these distances:
23 24 0.15
24 79 0.50
25 49 0.31
26 6 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:47602270 original size:9 final size:9
Alignment explanation
Indices: 47602256--47602321 Score: 69
Period size: 9 Copynumber: 6.9 Consensus size: 9
47602246 ATCTCGTGTG
47602256 CATATCATA
1 CATATCATA
*
47602265 CATATCATGTG
1 CATATCA--TA
47602276 CATATCATA
1 CATATCATA
* *
47602285 CATGTCATCTG
1 CATATCA--TA
47602296 CATATCATA
1 CATATCATA
47602305 CATATCATA
1 CATATCATA
47602314 CATATCAT
1 CATATCAT
47602322 GTTTATCAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
9 32 0.68
11 15 0.32
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:47602275 original size:20 final size:20
Alignment explanation
Indices: 47602252--47602312 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
47602242 GAACATCTCG
47602252 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
47602272 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
47602292 TCTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
47602312 T
1 T
47602313 ACATATCATG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:47602317 original size:4 final size:5
Alignment explanation
Indices: 47602256--47602321 Score: 59
Period size: 5 Copynumber: 13.6 Consensus size: 5
47602246 ATCTCGTGTG
* * *
47602256 CATAT CATA- CATAT CATGT GCATAT CATA- CATGT CATCT GCATAT CATA-
1 CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CATAT -CATAT CATAT
47602305 CATAT CATA- CATAT CAT
1 CATAT CATAT CATAT CAT
47602322 GTTTATCAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
4 15 0.30
5 27 0.54
6 8 0.16
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (5 bp):
CATAT
Found at i:47602388 original size:25 final size:25
Alignment explanation
Indices: 47602360--47602407 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
47602350 ATATATAAAC
* *
47602360 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
47602385 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
47602408 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:47625180 original size:40 final size:40
Alignment explanation
Indices: 47625089--47625309 Score: 254
Period size: 40 Copynumber: 5.5 Consensus size: 40
47625079 CTCAAGTAAT
* * *
47625089 CTTCGGGATTTAG-CCGGATATA-ACTACTAGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
47625127 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
47625167 CTTCGGGACTTAGCCCGGATATATTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
47625207 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
47625247 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
47625288 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
47625310 CATTCGAATA
Statistics
Matches: 153, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
38 11 0.07
39 19 0.12
40 93 0.61
41 27 0.18
42 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:47628549 original size:40 final size:39
Alignment explanation
Indices: 47628494--47628668 Score: 203
Period size: 40 Copynumber: 4.4 Consensus size: 39
47628484 GATGATAACT
* *
47628494 GGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTA-TATCC
*
47628534 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC
*
47628574 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC
* * *
47628614 GGGCTATGTCCCGAAGGCA-TTGAGCAAGTAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATATCC
* *
47628653 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
47628669 TACTTGGCTT
Statistics
Matches: 119, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
38 15 0.13
39 15 0.13
40 88 0.74
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCC
Found at i:47637872 original size:40 final size:39
Alignment explanation
Indices: 47637781--47638001 Score: 225
Period size: 40 Copynumber: 5.6 Consensus size: 39
47637771 CTCAAGTAAT
* * * *
47637781 CTTCGGGATTTAG-CCGGATATA-ACTACTAGCACAAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCAAAATGC
*
47637819 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCA-AAATGC
*
47637859 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCA-AAATGC
* *
47637899 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCAAGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCAA-AATGC
* * * *
47637939 CTTC-GGATCTTAGTCCGGTTATAGTCACAAAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCA-AAATGC
*
47637980 CTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
47638002 CATTCGAATA
Statistics
Matches: 153, Mismatches: 20, Indels: 17
0.81 0.11 0.09
Matches are distributed among these distances:
38 11 0.07
39 20 0.13
40 95 0.62
41 24 0.16
42 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCAAAATGC
Found at i:47637914 original size:80 final size:79
Alignment explanation
Indices: 47637781--47638001 Score: 263
Period size: 80 Copynumber: 2.8 Consensus size: 79
47637771 CTCAAGTAAT
* * *
47637781 CTTCGGGATTTAGCCGGATATA-ACTACTAGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCGGATATAGTC-ACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-
47637844 C-ACTAGCATA-AATGC
64 CAACTAGCA-AGAATGC
* *
47637859 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
*
47637924 AACTCGCAAGAATGC
65 AACTAGCAAGAATGC
* * *
47637939 CTTC-GGATCTTAGTCCGGTTATAGTCACAAAGCACAAAAGCCTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGA-CTTAG-CCGGATATAGTCAC-TAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
47638002 CATTCGAATA
Statistics
Matches: 125, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
78 12 0.10
79 21 0.17
80 61 0.49
81 31 0.25
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTAGCAAGAATGC
Found at i:47640710 original size:23 final size:21
Alignment explanation
Indices: 47640634--47640711 Score: 72
Period size: 23 Copynumber: 3.6 Consensus size: 21
47640624 AAAGGAAGAG
47640634 AGGAGAA-AAAAGAAAG-AAA
1 AGGAGAAGAAAAGAAAGAAAA
*
47640653 AGGAG-AGAGAAAGAAATGAGAA
1 AGGAGAAGA-AAAGAAA-GAAAA
*
47640675 AGGGGAAAGAAAAGAAAGAAAAA
1 AGGAG-AAGAAAAGAAAG-AAAA
47640698 ATGGAGAAGAAAAG
1 A-GGAGAAGAAAAG
47640712 GGTGGCTGGT
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
18 1 0.02
19 6 0.13
20 7 0.15
21 1 0.02
22 7 0.15
23 19 0.40
24 6 0.13
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (21 bp):
AGGAGAAGAAAAGAAAGAAAA
Found at i:47641670 original size:42 final size:42
Alignment explanation
Indices: 47641601--47641694 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
47641591 CGGTTCCAAG
* * *
47641601 CATGCCCCTGTCTCCATCTCGTGGGTGTTACACGACCTAGGA
1 CATGCCCGTGTCTCCATCTCGTAGGTGTCACACGACCTAGGA
* * *
47641643 CATGCCCGTGTCTCCAT-TCTGTAGGTGTCGCAGGGCCTAGGA
1 CATGCCCGTGTCTCCATCTC-GTAGGTGTCACACGACCTAGGA
*
47641685 CATGCTCGTG
1 CATGCCCGTG
47641695 GGTCCAGGCC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 2 0.05
42 42 0.95
ACGTcount: A:0.15, C:0.31, G:0.28, T:0.27
Consensus pattern (42 bp):
CATGCCCGTGTCTCCATCTCGTAGGTGTCACACGACCTAGGA
Found at i:47644488 original size:22 final size:22
Alignment explanation
Indices: 47644462--47644505 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
47644452 CAGCATCTAG
47644462 GAGTTTAATTACCTCAGCTTTA
1 GAGTTTAATTACCTCAGCTTTA
47644484 GAGTTTAATTACCTCAGCTTTA
1 GAGTTTAATTACCTCAGCTTTA
47644506 ACAACTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (22 bp):
GAGTTTAATTACCTCAGCTTTA
Found at i:47646557 original size:13 final size:13
Alignment explanation
Indices: 47646539--47646567 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
47646529 GAACCTGTAG
47646539 CCAAAGTGGTAAC
1 CCAAAGTGGTAAC
47646552 CCAAAGTGGTAAC
1 CCAAAGTGGTAAC
47646565 CCA
1 CCA
47646568 TGGTGAGGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.28, G:0.21, T:0.14
Consensus pattern (13 bp):
CCAAAGTGGTAAC
Found at i:47649535 original size:26 final size:26
Alignment explanation
Indices: 47649499--47649550 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
47649489 TTTGTATATT
47649499 AGATTTGTAAAAATGATTGAGTTAAG
1 AGATTTGTAAAAATGATTGAGTTAAG
47649525 AGATTTGTAAAAATGATTGAGTTAAG
1 AGATTTGTAAAAATGATTGAGTTAAG
47649551 TTGAAAGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (26 bp):
AGATTTGTAAAAATGATTGAGTTAAG
Found at i:47654157 original size:14 final size:13
Alignment explanation
Indices: 47654138--47654189 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
47654128 TGACATGTTC
47654138 TTCTTTCCTTTTCT
1 TTCTTT-CTTTTCT
* *
47654152 TTCTTTTTATTTTT
1 TTCTTTCT-TTTCT
47654166 TTCTTTTCTTTTCT
1 TTC-TTTCTTTTCT
47654180 TTC-TTCTTTT
1 TTCTTTCTTTT
47654190 TACTCCTTCG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
12 7 0.22
13 1 0.03
14 20 0.62
15 4 0.12
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (13 bp):
TTCTTTCTTTTCT
Found at i:47667934 original size:28 final size:28
Alignment explanation
Indices: 47667884--47667940 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
47667874 TAGTTGGGCT
* *
47667884 TGATGGGCCATATGAATGTGATTAGGCC
1 TGATGGGCCATATGAACGAGATTAGGCC
* *
47667912 TGATGGGCCATGTGAACGAGATTGGGCC
1 TGATGGGCCATATGAACGAGATTAGGCC
47667940 T
1 T
47667941 AAAGGGGCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (28 bp):
TGATGGGCCATATGAACGAGATTAGGCC
Found at i:47668305 original size:27 final size:27
Alignment explanation
Indices: 47668267--47668490 Score: 258
Period size: 27 Copynumber: 8.3 Consensus size: 27
47668257 AATTTACTAG
47668267 AATACCCTCGATTTGTAAAATTATCGA
1 AATACCCTCGATTTGTAAAATTATCGA
47668294 AATA-CCTACGATTTGTAAAATTATCGA
1 AATACCCT-CGATTTGTAAAATTATCGA
* *
47668321 AACACCCTCGATTTGTAAAATTATAGA
1 AATACCCTCGATTTGTAAAATTATCGA
* * *
47668348 AATACCCTTGATTTGAAAAATTACCGA
1 AATACCCTCGATTTGTAAAATTATCGA
47668375 AATACCCTCGATTTGTAAAATTA-CTGA
1 AATACCCTCGATTTGTAAAATTATC-GA
* * *
47668402 AATACCTTTGATTTGTAAAATTACCGA
1 AATACCCTCGATTTGTAAAATTATCGA
* * *
47668429 AAAACCC-CCATTTTGTAAAATTATCAA
1 AATACCCTCGA-TTTGTAAAATTATCGA
* * *
47668456 AATACCCTTG-TAGTGTAAAATTATTGA
1 AATACCCTCGAT-TTGTAAAATTATCGA
47668483 AATACCCT
1 AATACCCT
47668491 TGTAGTGTAA
Statistics
Matches: 167, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
26 6 0.04
27 157 0.94
28 4 0.02
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
AATACCCTCGATTTGTAAAATTATCGA
Found at i:47668514 original size:27 final size:27
Alignment explanation
Indices: 47668455--47668533 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
47668445 AAAATTATCA
* **
47668455 AAATACCCTTGTAGTGTAAAATTATTG
1 AAATACCCTTGTAGTGTAAAATGACCG
47668482 AAATACCCTTGTAGTGTAAAATGACCG
1 AAATACCCTTGTAGTGTAAAATGACCG
* * * *
47668509 ACATACCCCTATAGGGTAAAATGAC
1 AAATACCCTTGTAGTGTAAAATGAC
47668534 TGTTTTACCC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (27 bp):
AAATACCCTTGTAGTGTAAAATGACCG
Found at i:47675587 original size:16 final size:16
Alignment explanation
Indices: 47675566--47675600 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
47675556 GCAAATCCCG
*
47675566 AAATGCCGAAAAGCCA
1 AAATGCCAAAAAGCCA
47675582 AAATGCCAAAAAGCCA
1 AAATGCCAAAAAGCCA
47675598 AAA
1 AAA
47675601 GTTTGGCTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.57, C:0.23, G:0.14, T:0.06
Consensus pattern (16 bp):
AAATGCCAAAAAGCCA
Found at i:47679369 original size:41 final size:40
Alignment explanation
Indices: 47679324--47679531 Score: 136
Period size: 41 Copynumber: 5.1 Consensus size: 40
47679314 GTGTAAATAG
* * *
47679324 GGGCACATTTGTGCTATTCAAGGGTACTGAAGTACAAACAA
1 GGGCACGTATGTGCTATTCAAGGGTAC-AAAGTACAAACAA
* *
47679365 GGGCACGTATGTG-TAATTCAAGGGTAACAAAGTATAAACAG
1 GGGCACGTATGTGCT-ATTCAAGGGT-ACAAAGTACAAACAA
* * * *
47679406 GGGCACGTATGTGCGATTCAGGGGTACCAAAGTA-TAACTA
1 GGGCACGTATGTGCTATTCAAGGGTA-CAAAGTACAAACAA
* * * * * *
47679446 GGTGCACGTATGTACAATT-TAGGG-ACCGAAGTACAAATAG
1 GG-GCACGTATGTGCTATTCAAGGGTA-CAAAGTACAAACAA
** * * * *
47679486 GGGCGTGTATGTGCAATTTAGGGGTACCAAAGTACAAACAT
1 GGGCACGTATGTGCTATTCAAGGGTA-CAAAGTACAAACAA
47679527 GGGCA
1 GGGCA
47679532 TGCATTTAGG
Statistics
Matches: 131, Mismatches: 28, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
39 21 0.16
40 17 0.13
41 91 0.69
42 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (40 bp):
GGGCACGTATGTGCTATTCAAGGGTACAAAGTACAAACAA
Found at i:47679544 original size:34 final size:34
Alignment explanation
Indices: 47679501--47679565 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
47679491 TGTATGTGCA
47679501 ATTTAGGGGTACCAAAGTACAAACATGGGCATGC
1 ATTTAGGGGTACCAAAGTACAAACATGGGCATGC
**
47679535 ATTTAGGGGTACTGAAGTACAAACATGGGCA
1 ATTTAGGGGTACCAAAGTACAAACATGGGCA
47679566 CGTATATGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.35, C:0.15, G:0.28, T:0.22
Consensus pattern (34 bp):
ATTTAGGGGTACCAAAGTACAAACATGGGCATGC
Found at i:47679587 original size:41 final size:41
Alignment explanation
Indices: 47679535--47679626 Score: 114
Period size: 41 Copynumber: 2.2 Consensus size: 41
47679525 ATGGGCATGC
* *
47679535 ATTTAGGGGTACTGAAGTACAAACATGGGCACGTATATGCA
1 ATTTAGGGGTACCGAAGTACAAACATGGGCACGTATGTGCA
* * *
47679576 ATTTAGGGGTACCGAAGTACAAACA-GGGGATTGTATATGCA
1 ATTTAGGGGTACCGAAGTACAAACATGGGCA-CGTATGTGCA
*
47679617 ATTCAGGGGT
1 ATTTAGGGGT
47679627 TAACTAACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
40 4 0.09
41 42 0.91
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (41 bp):
ATTTAGGGGTACCGAAGTACAAACATGGGCACGTATGTGCA
Found at i:47684472 original size:176 final size:176
Alignment explanation
Indices: 47684178--47684522 Score: 672
Period size: 176 Copynumber: 2.0 Consensus size: 176
47684168 TTCCCCTCCC
47684178 AAGGGCAGGTTCTTACGCGTACCCCAAGACGGGTTGATTAGTCAATCTAGCTTGAAGCGGGCTCA
1 AAGGGCAGGTTCTTACGCGTACCCCAAGACGGGTTGATTAGTCAATCTAGCTTGAAGCGGGCTCA
47684243 AAAGATCAATCGTATAGAGTTTTCGCTATCCTTTGTATGGATTCCCATACATGTATTGCTAAACA
66 AAAGATCAATCGTATAGAGTTTTCGCTATCCTTTGTATGGATTCCCATACATGTATTGCTAAACA
*
47684308 AACGGGGGATTGAACAAAAACCGAGTGGATCGTTAGGAATTAAACA
131 AACGGGGGATTGAACAAAAAACGAGTGGATCGTTAGGAATTAAACA
47684354 AAGGGCAGGTTCTTACGCGTACCCCAAGACGGGTTGATTAGTCAATCTAGCTTGAAGCGGGCTCA
1 AAGGGCAGGTTCTTACGCGTACCCCAAGACGGGTTGATTAGTCAATCTAGCTTGAAGCGGGCTCA
47684419 AAAGATCAATCGTATAGAGTTTTCGCTATCCTTTGTATGGATTCCCATACATGTATTGCTAAACA
66 AAAGATCAATCGTATAGAGTTTTCGCTATCCTTTGTATGGATTCCCATACATGTATTGCTAAACA
*
47684484 AACGGGGGATTGAACAAAAAATGAGTGGATCGTTAGGAA
131 AACGGGGGATTGAACAAAAAACGAGTGGATCGTTAGGAA
47684523 CACCAAAATA
Statistics
Matches: 167, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
176 167 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (176 bp):
AAGGGCAGGTTCTTACGCGTACCCCAAGACGGGTTGATTAGTCAATCTAGCTTGAAGCGGGCTCA
AAAGATCAATCGTATAGAGTTTTCGCTATCCTTTGTATGGATTCCCATACATGTATTGCTAAACA
AACGGGGGATTGAACAAAAAACGAGTGGATCGTTAGGAATTAAACA
Found at i:47685739 original size:49 final size:49
Alignment explanation
Indices: 47685672--47685843 Score: 161
Period size: 49 Copynumber: 3.5 Consensus size: 49
47685662 CAAAGTCGAT
* * *
47685672 GCCATGTCCCAGATAGGTCTTAAACTGACTTTCATATATCGAGGCCGAG
1 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCAAG
* * * * * * *
47685721 GCCGTGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCG-GTGTCAAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-GCCAAG
* * ** *
47685770 GCCATGTCCCAGACAGGTCTTACACT-AGCTTGCATATCTCGAGGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATCGAGGCCAAG
*
47685819 G-CATGTCCCAGACATGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
47685844 AGCTCTCGTC
Statistics
Matches: 99, Mismatches: 21, Indels: 7
0.78 0.17 0.06
Matches are distributed among these distances:
48 24 0.24
49 74 0.75
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCAAG
Found at i:47685788 original size:98 final size:97
Alignment explanation
Indices: 47685670--47685850 Score: 247
Period size: 98 Copynumber: 1.9 Consensus size: 97
47685660 ATCAAAGTCG
* * * *
47685670 ATGCCATGTCCCAGATAGGTCTTAAACT-GACTTTCATATATCGAGGCCGAGGCCGTGTCCTAGA
1 ATGCCATGTCCCAGACAGGTCTTAAACTAG-CTTGCATATATCGAGGCCGAGG-CATGTCCCAGA
*
47685734 CAGGTCTTACACTGGCTCTCATCTATCGGTGTCA
64 CAGGTCTTACACTAGCTCTCATCTATCGGTGTCA
* * * *
47685768 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATCTCGAGGCTGATGCATGTCCCAGACA
1 ATGCCATGTCCCAGACAGGTCTTAAACTAGCTTGCATATATCGAGGCCGAGGCATGTCCCAGACA
*
47685833 TGTCTTACACTAGCTCTC
66 GGTCTTACACTAGCTCTC
47685851 GTCTCAACAC
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
97 27 0.38
98 44 0.61
99 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (97 bp):
ATGCCATGTCCCAGACAGGTCTTAAACTAGCTTGCATATATCGAGGCCGAGGCATGTCCCAGACA
GGTCTTACACTAGCTCTCATCTATCGGTGTCA
Found at i:47689887 original size:21 final size:21
Alignment explanation
Indices: 47689840--47689881 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
47689830 AAGAAGTTGA
47689840 TAATTTGTTATATTATATATG
1 TAATTTGTTATATTATATATG
*
47689861 TAATTTGTTTTTATTATATAT
1 TAATTTG-TTATATTATATAT
47689882 TGATTTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (21 bp):
TAATTTGTTATATTATATATG
Found at i:47689894 original size:22 final size:23
Alignment explanation
Indices: 47689845--47689895 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
47689835 GTTGATAATT
* *
47689845 TGTTATATTATATATGTAATTTG
1 TGTTTTATTATATATGTAATTTA
*
47689868 T-TTTTATTATATAT-TGATTTA
1 TGTTTTATTATATATGTAATTTA
47689889 TGTTTTA
1 TGTTTTA
47689896 AACTATGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 6 0.25
22 17 0.71
23 1 0.04
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (23 bp):
TGTTTTATTATATATGTAATTTA
Found at i:47696277 original size:20 final size:20
Alignment explanation
Indices: 47696252--47696293 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
47696242 AACGGACTTA
47696252 ATTCATTAATTAAACAGCTC
1 ATTCATTAATTAAACAGCTC
47696272 ATTCATTAATTAAACAGCTC
1 ATTCATTAATTAAACAGCTC
47696292 AT
1 AT
47696294 ACAATTCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (20 bp):
ATTCATTAATTAAACAGCTC
Found at i:47697580 original size:46 final size:46
Alignment explanation
Indices: 47697513--47697738 Score: 209
Period size: 47 Copynumber: 4.9 Consensus size: 46
47697503 TGTAACCTGC
* * *
47697513 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTA-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGG-ATGCCTAGT
47697559 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGATGCCTAG-T
* * *
47697605 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTC-GGATGCCTAGTT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGATGCCTAG-T
* * * *
47697652 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTG-C-A-T
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-GA--TGCCTAGT
47697699 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGATGC
47697739 TCAACCATCC
Statistics
Matches: 159, Mismatches: 11, Indels: 23
0.82 0.06 0.12
Matches are distributed among these distances:
42 2 0.01
44 6 0.04
45 5 0.03
46 62 0.39
47 76 0.48
48 3 0.02
49 2 0.01
50 1 0.01
51 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGATGCCTAGT
Found at i:47697635 original size:47 final size:47
Alignment explanation
Indices: 47697567--47697689 Score: 246
Period size: 47 Copynumber: 2.6 Consensus size: 47
47697557 ATCCATAAGT
47697567 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
47697614 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
47697661 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
47697690 CATTTGCATC
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 76 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:47701876 original size:9 final size:9
Alignment explanation
Indices: 47701864--47701920 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
47701854 TTTGATAAAC
47701864 ATGATATGT
1 ATGATATGT
*
47701873 ATGATATGCAC
1 ATGATATG--T
*
47701884 ATGACATGT
1 ATGATATGT
*
47701893 ATGATATGCAC
1 ATGATATG--T
47701904 ATGATATGT
1 ATGATATGT
47701913 ATGATATG
1 ATGATATG
47701921 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:47701887 original size:20 final size:20
Alignment explanation
Indices: 47701862--47701932 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
47701852 ATTTTGATAA
47701862 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
47701882 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
47701902 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
47701922 ACATGAGATGT
1 ACATGATATGT
47701933 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:47701909 original size:11 final size:11
Alignment explanation
Indices: 47701873--47701927 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
47701863 CATGATATGT
47701873 ATGATATGCAC
1 ATGATATGCAC
* *
47701884 ATGACATG--T
1 ATGATATGCAC
47701893 ATGATATGCAC
1 ATGATATGCAC
*
47701904 ATGATATG--T
1 ATGATATGCAC
47701913 ATGATATGCAC
1 ATGATATGCAC
47701924 ATGA
1 ATGA
47701928 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:47702034 original size:24 final size:24
Alignment explanation
Indices: 47701977--47702143 Score: 218
Period size: 24 Copynumber: 7.0 Consensus size: 24
47701967 GGAGGAAGTG
47701977 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
47702001 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
47702024 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
47702048 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
47702072 -TAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
* *
47702096 AAAAAGGGCTT-TGCCTCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
47702118 CTAAAAGAGGC-TAGGCCTCCAGTTAT
1 C-AAAAG-GGCTTATGCC-CCAGTTAT
47702144 ATGATAAAGC
Statistics
Matches: 127, Mismatches: 8, Indels: 14
0.85 0.05 0.09
Matches are distributed among these distances:
23 49 0.39
24 63 0.50
25 15 0.12
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:47702046 original size:47 final size:47
Alignment explanation
Indices: 47701977--47702143 Score: 216
Period size: 47 Copynumber: 3.5 Consensus size: 47
47701967 GGAGGAAGTG
47701977 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
47702024 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
* *
47702072 -TAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCTCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTATT--AAAGGGCTTATGCCCCAGTTAT
*
47702118 CTAAAAGAGGC-TAGGCCTCCAGTTAT
1 C-AAAAG-GGCTTATGCC-CCAGTTAT
47702144 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 6, Indels: 12
0.86 0.05 0.10
Matches are distributed among these distances:
47 56 0.52
48 40 0.37
49 11 0.10
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:47702093 original size:71 final size:70
Alignment explanation
Indices: 47701977--47702143 Score: 248
Period size: 71 Copynumber: 2.3 Consensus size: 70
47701967 GGAGGAAGTG
*
47701977 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTA-TCAAAAGGGCTTATGCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCC
47702041 CAGTTA
65 CAGTTA
*
47702047 TCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCT
1 -CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCC
47702112 CAGTTA
65 CAGTTA
*
47702118 CTAAAAGAGGC-TAGGCCTCCAGTTAT
1 C-AAAAG-GGCTTATGCC-CCAGTTAT
47702144 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
70 1 0.01
71 66 0.74
72 22 0.25
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (70 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCC
AGTTA
Found at i:47703845 original size:22 final size:22
Alignment explanation
Indices: 47703797--47703846 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
47703787 AGTTGATAAT
*
47703797 TTTTTATTATATATGTAATTTG
1 TTTTTATTATATATGTAATTTA
*
47703819 TTTTTATTATATAT-TGATTTA
1 TTTTTATTATATATGTAATTTA
47703840 TGTTTTA
1 T-TTTTA
47703847 AACTATGTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (22 bp):
TTTTTATTATATATGTAATTTA
Found at i:47705678 original size:49 final size:49
Alignment explanation
Indices: 47705618--47705896 Score: 220
Period size: 49 Copynumber: 5.6 Consensus size: 49
47705608 CTGGTACGCA
* *
47705618 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACCATCTGATACACG
*
47705667 TAGTAGCCTGCACTTAGTACTACATACAT--GACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTAC--ACATGCGACC-AACCATCTGATACACG
* *** * *** * * *
47705717 TAGTAGCTTGCACTTAGTACTACACACATGATCGAAGTTGTCGGATACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-CCATCTGATACACG
* * * * *
47705768 TAGTAGCCTGCGCTTAGTACTACACATGCGACCTACTATATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACCATCTGATACACG
* * * * * * *
47705817 TAGGAGCCTGCACTTTGTACTACACACGTGACCTAAAACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC---AACCATCTGATACACG
* *
47705869 TAGTAGCCTTCACATAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
47705897 TGTTCTCACA
Statistics
Matches: 176, Mismatches: 44, Indels: 17
0.74 0.19 0.07
Matches are distributed among these distances:
48 3 0.02
49 62 0.35
50 41 0.23
51 38 0.22
52 32 0.18
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAACCATCTGATACACG
Found at i:47705894 original size:150 final size:149
Alignment explanation
Indices: 47705612--47705896 Score: 387
Period size: 150 Copynumber: 1.9 Consensus size: 149
47705602 AGCTATCTGG
* * *
47705612 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGATACATGTAGTAGCCTG
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATATGATACACGTAGGAGCCTG
* * * *
47705677 CACTTAGTACTACATACATGACCTAACCATTTGATACACGTAGTAGCTTGCACTTAGTACTACAC
66 CACTTAGTACTACACACATGACCTAACCATTTGAAACACATAGTAGCTTGCACATAGTACTA-AC
47705742 ACATGATCGAAGTTGTCGGA
130 ACATGATCGAAGTTGTCGGA
* * * *
47705762 TACGCATAGTAGCCTGCGCTTAGTACTACACATGCGACCTACTATATGGTACACGTAGGAGCCTG
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATATGATACACGTAGGAGCCTG
* *
47705827 CACTTTGTACTACACACGTGACCTAAAACCATCTT-AAACACATAGTAGCCTT-CACATAGTACT
66 CACTTAGTACTACACACATGACCT--AACCAT-TTGAAACACATAGTAG-CTTGCACATAGTACT
47705890 -ACACATG
127 AACACATG
47705897 TGTTCTCACA
Statistics
Matches: 118, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
150 86 0.73
152 27 0.23
153 5 0.04
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (149 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATATGATACACGTAGGAGCCTG
CACTTAGTACTACACACATGACCTAACCATTTGAAACACATAGTAGCTTGCACATAGTACTAACA
CATGATCGAAGTTGTCGGA
Found at i:47706646 original size:16 final size:17
Alignment explanation
Indices: 47706625--47706663 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
47706615 TCTATAATGC
47706625 CCCAAAAATATCGAAA-
1 CCCAAAAATATCGAAAT
* *
47706641 CCCAAAAATCTTGAAAT
1 CCCAAAAATATCGAAAT
47706658 CCCAAA
1 CCCAAA
47706664 CTTTCTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.51, C:0.28, G:0.05, T:0.15
Consensus pattern (17 bp):
CCCAAAAATATCGAAAT
Found at i:47707967 original size:16 final size:16
Alignment explanation
Indices: 47707934--47707986 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
47707924 GTAAATCCCA
* *
47707934 AAAAGCCGAAATACCG
1 AAAAGTCGAAATGCCG
*
47707950 AAAAGTCGAAATGTCG
1 AAAAGTCGAAATGCCG
* *
47707966 AAAAGTCAAAATGCCA
1 AAAAGTCGAAATGCCG
47707982 AAAAG
1 AAAAG
47707987 CCAAAAGTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.53, C:0.17, G:0.19, T:0.11
Consensus pattern (16 bp):
AAAAGTCGAAATGCCG
Found at i:47707991 original size:16 final size:16
Alignment explanation
Indices: 47707926--47707992 Score: 53
Period size: 16 Copynumber: 4.2 Consensus size: 16
47707916 GTAGATCGGT
* *
47707926 AAATCCCAAAAAGCCG
1 AAATGCCAAAAAGCCA
* * * *
47707942 AAATACCGAAAAGTCG
1 AAATGCCAAAAAGCCA
* * *
47707958 AAATGTCGAAAAGTCA
1 AAATGCCAAAAAGCCA
47707974 AAATGCCAAAAAGCCA
1 AAATGCCAAAAAGCCA
47707990 AAA
1 AAA
47707993 GTTTGGCTAC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.54, C:0.21, G:0.15, T:0.10
Consensus pattern (16 bp):
AAATGCCAAAAAGCCA
Found at i:47708269 original size:29 final size:28
Alignment explanation
Indices: 47708206--47708271 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 28
47708196 AGCATGACTG
*
47708206 TAAATGTGATTTGGGCCTAGTGGCCATA
1 TAAATGTGATTTGGGCCTAATGGCCATA
*
47708234 TGAATGTGATTTGGGCCTAATAGGCC-TCA
1 TAAATGTGATTTGGGCCTAAT-GGCCAT-A
47708263 TAAATGTGA
1 TAAATGTGA
47708272 ATGGCCATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 20 0.61
29 13 0.39
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (28 bp):
TAAATGTGATTTGGGCCTAATGGCCATA
Found at i:47714320 original size:16 final size:16
Alignment explanation
Indices: 47714299--47714330 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
47714289 CGTACTGGAG
47714299 GCTTTTCCTCAATTTA
1 GCTTTTCCTCAATTTA
47714315 GCTTTTCCTCAATTTA
1 GCTTTTCCTCAATTTA
47714331 CTGTATTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.25, G:0.06, T:0.50
Consensus pattern (16 bp):
GCTTTTCCTCAATTTA
Found at i:47725866 original size:49 final size:49
Alignment explanation
Indices: 47725652--47725925 Score: 219
Period size: 49 Copynumber: 5.5 Consensus size: 49
47725642 GTACGCATAA
* * * * ** *
47725652 TAGCCTGCACTTAGTACTGCACATGCGACCAACAATCGGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCTACAATATGGTGCACGTAG
* * * * *
47725701 TAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAA
1 TAGCCTGCACTTAGTACTACACACGTGACCT-ACAATATGGTGCACGTAG
* * * * * *
47725751 TAGGCTGCACTTAGTACTACACACGTGATCGA-AGT-TGTCGGGTACGCATAG
1 TAGCCTGCACTTAGTACTACACACGTGACCTACAATATG--GTGCACG--TAG
* * *
47725802 TAGCCTGCACTTAGTACTACACATGCGACCTACTATATGGTGCACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCTACAATATGGTGCACGTAG
* * ** *
47725851 TAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAGACACATAG
1 TAGCCTGCACTTAGTACTACACACGTGACCTACAA-TATGGT-G-CACGTAG
*
47725903 TAGCCTGCACATAGTACTACACA
1 TAGCCTGCACTTAGTACTACACA
47725926 TGTGTTCTTA
Statistics
Matches: 179, Mismatches: 36, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
47 2 0.01
48 1 0.01
49 65 0.36
50 45 0.25
51 35 0.20
52 29 0.16
53 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACACGTGACCTACAATATGGTGCACGTAG
Found at i:47725902 original size:101 final size:101
Alignment explanation
Indices: 47725649--47725927 Score: 296
Period size: 101 Copynumber: 2.8 Consensus size: 101
47725639 TTTGTACGCA
* * * * * *
47725649 TAATAGCCTGCACTTAGTACTGCACATGCGACC--AACAATCGGGTACACGTAGTAGCCTGCACT
1 TAATAGCCTGCACTTAGTACTACACACGTGACCAAAACCATCGAGTACACATAGTAGCCTGCACT
* * *
47725712 TAGTACTACACACGTGACCTAACCATCTGATACACG
66 TAGTACTACACATGCGACCTAACCATATGATACACG
* * * **** * *
47725748 TAATAGGCTGCACTTAGTACTACACACGTGATCGAAGTTGTCGGGTACGCATAGTAGCCTGCACT
1 TAATAGCCTGCACTTAGTACTACACACGTGACCAAAACCATCGAGTACACATAGTAGCCTGCACT
* * *
47725813 TAGTACTACACATGCGACCT-ACTATATGGTGCACG
66 TAGTACTACACATGCGACCTAACCATATGATACACG
* *
47725848 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAG-ACACATAGTAGCCTGCA
1 TAATAGCCTGCACTTAGTACTACACACGTGACC-AAAACCATC-GAGTACACATAGTAGCCTGCA
*
47725912 CATAGTACTACACATG
64 CTTAGTACTACACATG
47725928 TGTTCTTACA
Statistics
Matches: 147, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
99 28 0.19
100 41 0.28
101 77 0.52
102 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (101 bp):
TAATAGCCTGCACTTAGTACTACACACGTGACCAAAACCATCGAGTACACATAGTAGCCTGCACT
TAGTACTACACATGCGACCTAACCATATGATACACG
Found at i:47735240 original size:47 final size:45
Alignment explanation
Indices: 47735167--47735437 Score: 210
Period size: 47 Copynumber: 5.8 Consensus size: 45
47735157 AGTAAGGTGT
* * * *
47735167 CGATGCCATGTCCTAGACACGATCTTACTCTAGCTCACATCTCAGGT
1 CGATG-CATGTCCCAGACATG-TCTTACACTAGCTCACATCTCAGGC
*
47735214 CAATGCCATGTCCCAGACATGGTCTTACACT-GACT-ATCATCTC-GTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCA-CATCTCAG--GC
* * *
47735262 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACTTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTC-AGGC
* * * *
47735308 CGATGCATGTCCTAGACATGTCTTACACTAGCCCTCATCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTC-AGGC
* * * * *
47735354 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAAT-ATGGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACAT-CTCA-GGC
* *
47735402 CAATGCATGTCCCAGACAT-TTTTACACTAGCTCACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
47735438 CACGAATGAC
Statistics
Matches: 184, Mismatches: 27, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
45 13 0.07
46 65 0.35
47 77 0.42
48 28 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAGGC
Found at i:47741731 original size:11 final size:11
Alignment explanation
Indices: 47741715--47741740 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
47741705 CGAAGCCCAC
47741715 ATCACAATAAT
1 ATCACAATAAT
47741726 ATCACAATAAT
1 ATCACAATAAT
47741737 ATCA
1 ATCA
47741741 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:47742205 original size:27 final size:27
Alignment explanation
Indices: 47742131--47742219 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
47742121 CAAAATAGTC
* * * * *
47742131 ATTTTACCCTACAGGGGTATGTCAGTC
1 ATTTTACACTACAAGGGTATTTCTGTA
47742158 ATTTTACACTACAAGGGTATTTCTGTA
1 ATTTTACACTACAAGGGTATTTCTGTA
47742185 ATTTTACACTACAAGGGTATTT-TGATA
1 ATTTTACACTACAAGGGTATTTCTG-TA
47742212 ATTTTACA
1 ATTTTACA
47742220 AATCGGGGGT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 2 0.04
27 54 0.96
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCTGTA
Found at i:47742229 original size:27 final size:27
Alignment explanation
Indices: 47742171--47742538 Score: 354
Period size: 27 Copynumber: 13.7 Consensus size: 27
47742161 TTACACTACA
* *
47742171 AGGGTATTTCTG-TAATTTTAC-ACTACA
1 AGGGTATTTC-GATAATTTTACAAAT-CG
*
47742198 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
47742225 GGGGTGTTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
*
47742252 AGGGTATTT-TAGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * * *
47742279 ATGGTATTTCAAAAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
47742306 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
47742333 AGGGTGTTTCGGTAATTTCACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
47742360 GGGGTATTTTGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
47742387 AGGGTATTT-TAGTAATTTCAC-AATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
47742413 AGGGTATTTTGGTAATTTTACAAAT-T
1 AGGGTATTTCGATAATTTTACAAATCG
*
47742439 AGGGGTATTTCAATAATTTTACAAATCG
1 A-GGGTATTTCGATAATTTTACAAATCG
* * *
47742467 AGGGTATTTTGGTAATTTTATAAA-CTG
1 AGGGTATTTCGATAATTTTACAAATC-G
*
47742494 AGGGTACTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
47742521 AGGGTATTTCAATAATTT
1 AGGGTATTTCGATAATTT
47742539 CTCTTTATTA
Statistics
Matches: 279, Mismatches: 51, Indels: 22
0.79 0.14 0.06
Matches are distributed among these distances:
26 25 0.09
27 249 0.89
28 5 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:47742896 original size:28 final size:28
Alignment explanation
Indices: 47742844--47742917 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
47742834 CTTATTCATT
* * *
47742844 TGGCCCATTTAGGCCAAATCTCATTCACA
1 TGGCCCA-TCAGGCCCAATCACATTCACA
*
47742873 TGGCCCATCAGGCCCAATCACATTCATA
1 TGGCCCATCAGGCCCAATCACATTCACA
47742901 TGGCCCATCAGGCCCAA
1 TGGCCCATCAGGCCCAA
47742918 CTATTTCCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 34 0.83
29 7 0.17
ACGTcount: A:0.27, C:0.35, G:0.16, T:0.22
Consensus pattern (28 bp):
TGGCCCATCAGGCCCAATCACATTCACA
Found at i:47751695 original size:47 final size:47
Alignment explanation
Indices: 47751635--47751796 Score: 176
Period size: 47 Copynumber: 3.5 Consensus size: 47
47751625 AATGTCCGAA
47751635 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCTGAG
* * * *
47751682 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATGATGCGAA-T--G--TCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCGA--GA-GATG-TAACTAGGCATCTGAG
*
47751727 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCAT-TCAAG
1 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCT-GAG
*
47751774 CTTGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
47751797 ACTTGTGGAT
Statistics
Matches: 94, Mismatches: 10, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 28 0.30
46 2 0.02
47 48 0.51
48 1 0.01
49 5 0.05
50 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCTGAG
Found at i:47751744 original size:92 final size:93
Alignment explanation
Indices: 47751579--47751843 Score: 428
Period size: 92 Copynumber: 2.9 Consensus size: 93
47751569 AGGATATTTG
*
47751579 GGCATTCGAA-CTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGA
1 GGCATTC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGA
47751643 GTTGAGTCCGAGTTCGAGAGATGTAACTA
65 GTTGAGTCCGAGTTCGAGAGATGTAACTA
*
47751672 GGCA-TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATGTCCGAACTCGTTGA
1 GGCATTC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGA
47751735 GTTGAGTCCGAGTTCGAGAGATGTAACTA
65 GTTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * *
47751764 GGCATTCAAGCTTGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATTCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
47751829 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
47751844 CTTATGGGCG
Statistics
Matches: 160, Mismatches: 9, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
92 89 0.56
93 71 0.44
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATTCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:47770670 original size:3 final size:3
Alignment explanation
Indices: 47770651--47770718 Score: 64
Period size: 3 Copynumber: 22.7 Consensus size: 3
47770641 CTTTACAGCC
* * * * * *
47770651 ATT ATC ATT ACT ATT ATT ATT ATT ATA ATT ATT CTT ATT CTT ATT CTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
47770699 CTT ATT ATT ATT ACT ATT AT
1 ATT ATT ATT ATT ATT ATT AT
47770719 CATCTTCTTT
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:47775724 original size:14 final size:16
Alignment explanation
Indices: 47775701--47775733 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
47775691 TAAATCACGA
47775701 AAATTCCACACAT-AT
1 AAATTCCACACATAAT
47775716 AAATT-CACACATAAT
1 AAATTCCACACATAAT
47775731 AAA
1 AAA
47775734 CACTGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (16 bp):
AAATTCCACACATAAT
Found at i:47776151 original size:22 final size:22
Alignment explanation
Indices: 47776119--47776187 Score: 111
Period size: 22 Copynumber: 3.1 Consensus size: 22
47776109 TATGCACTAT
47776119 TAAACAGAGAGCACAAATGTGC
1 TAAACAGAGAGCACAAATGTGC
*
47776141 TAAACAAAGAGCACAAATGTGC
1 TAAACAGAGAGCACAAATGTGC
* *
47776163 TAAACAGAGAGCACTAACGTGC
1 TAAACAGAGAGCACAAATGTGC
47776185 TAA
1 TAA
47776188 TTATCAGAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.46, C:0.19, G:0.20, T:0.14
Consensus pattern (22 bp):
TAAACAGAGAGCACAAATGTGC
Found at i:47780879 original size:60 final size:60
Alignment explanation
Indices: 47780767--47780882 Score: 137
Period size: 60 Copynumber: 1.9 Consensus size: 60
47780757 ACAATTTCAC
* * * *
47780767 TTGGGTCTCAGCCCTTATCAGAATCAATTGGGCCTAGCCAATTTTCAAAATCAGTAATAG
1 TTGGGTCTCAGCCCTTAACAGAATCAAGTGGGCCTAGCCAATGTACAAAATCAGTAATAG
* * *
47780827 TTGGGTCT-AGCCCATTAACAGAATCAGGTGGGCCTAAGCCCA-GTACAGAATCAGTA
1 TTGGGTCTCAGCCC-TTAACAGAATCAAGTGGGCCT-AGCCAATGTACAAAATCAGTA
47780883 TCAGATGTAG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
59 5 0.11
60 37 0.79
61 5 0.11
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (60 bp):
TTGGGTCTCAGCCCTTAACAGAATCAAGTGGGCCTAGCCAATGTACAAAATCAGTAATAG
Found at i:47781027 original size:22 final size:22
Alignment explanation
Indices: 47781002--47781054 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
47780992 CTAAGTCAAT
* *
47781002 AGGACGGCTCAATGTCATAGAC
1 AGGACGGCTCAACGCCATAGAC
*
47781024 AGGACGGCTCAACGCCGTAGAC
1 AGGACGGCTCAACGCCATAGAC
*
47781046 AGGATGGCT
1 AGGACGGCT
47781055 AAAGGCTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.32, T:0.15
Consensus pattern (22 bp):
AGGACGGCTCAACGCCATAGAC
Found at i:47781334 original size:27 final size:27
Alignment explanation
Indices: 47781304--47781360 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
47781294 ATCGTCATTC
*
47781304 TACCATACAGGGGTATTACGGTAATTT
1 TACCATACAGGGGCATTACGGTAATTT
*
47781331 TACCCTACAGGGGCATTACGGTAATTT
1 TACCATACAGGGGCATTACGGTAATTT
47781358 TAC
1 TAC
47781361 AAACTGGGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (27 bp):
TACCATACAGGGGCATTACGGTAATTT
Found at i:47783237 original size:60 final size:60
Alignment explanation
Indices: 47783125--47783240 Score: 137
Period size: 60 Copynumber: 1.9 Consensus size: 60
47783115 ACAATTTCAC
* * * *
47783125 TTGGGTCTCAGCCCTTATCAGAATCAATTGGGCCTAGCCAATTTTCAAAATCAGTAATAG
1 TTGGGTCTCAGCCCTTAACAGAATCAAGTGGGCCTAGCCAATGTACAAAATCAGTAATAG
* * *
47783185 TTGGGTCT-AGCCCATTAACAGAATCAGGTGGGCCTAAGCCCA-GTACAGAATCAGTA
1 TTGGGTCTCAGCCC-TTAACAGAATCAAGTGGGCCT-AGCCAATGTACAAAATCAGTA
47783241 TCAGATGTAG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
59 5 0.11
60 37 0.79
61 5 0.11
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (60 bp):
TTGGGTCTCAGCCCTTAACAGAATCAAGTGGGCCTAGCCAATGTACAAAATCAGTAATAG
Found at i:47783385 original size:22 final size:22
Alignment explanation
Indices: 47783360--47783412 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
47783350 CTAAGTCAAT
* *
47783360 AGGACGGCTCAATGTCATAGAC
1 AGGACGGCTCAACGCCATAGAC
*
47783382 AGGACGGCTCAACGCCGTAGAC
1 AGGACGGCTCAACGCCATAGAC
*
47783404 AGGATGGCT
1 AGGACGGCT
47783413 AAAGGCTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.32, T:0.15
Consensus pattern (22 bp):
AGGACGGCTCAACGCCATAGAC
Found at i:47783692 original size:27 final size:27
Alignment explanation
Indices: 47783662--47783718 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
47783652 ATCGTCATTC
*
47783662 TACCATACAGGGGTATTACGATAATTT
1 TACCATACAGGGGCATTACGATAATTT
* *
47783689 TACCCTACAGGGGCATTACGGTAATTT
1 TACCATACAGGGGCATTACGATAATTT
47783716 TAC
1 TAC
47783719 AAACTGGGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (27 bp):
TACCATACAGGGGCATTACGATAATTT
Found at i:47785593 original size:60 final size:60
Alignment explanation
Indices: 47785481--47785596 Score: 137
Period size: 60 Copynumber: 1.9 Consensus size: 60
47785471 ACAATTTCAC
* * * *
47785481 TTGGGTCTCAGCCCTTATCAGAATCAATTGGGCCTAGCCAATTTTCAAAATCAGTAATAG
1 TTGGGTCTCAGCCCTTAACAGAATCAAGTGGGCCTAGCCAATGTACAAAATCAGTAATAG
* * *
47785541 TTGGGTCT-AGCCCATTAACAGAATCAGGTGGGCCTAAGCCCA-GTACAGAATCAGTA
1 TTGGGTCTCAGCCC-TTAACAGAATCAAGTGGGCCT-AGCCAATGTACAAAATCAGTA
47785597 TCAGATGTAG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
59 5 0.11
60 37 0.79
61 5 0.11
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (60 bp):
TTGGGTCTCAGCCCTTAACAGAATCAAGTGGGCCTAGCCAATGTACAAAATCAGTAATAG
Found at i:47785741 original size:22 final size:22
Alignment explanation
Indices: 47785716--47785768 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
47785706 CTAAGTCAAT
* *
47785716 AGGACGGCTCAATGTCATAGAC
1 AGGACGGCTCAACGCCATAGAC
*
47785738 AGGACGGCTCAACGCCGTAGAC
1 AGGACGGCTCAACGCCATAGAC
*
47785760 AGGATGGCT
1 AGGACGGCT
47785769 AAAGGCTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.32, T:0.15
Consensus pattern (22 bp):
AGGACGGCTCAACGCCATAGAC
Found at i:47786048 original size:27 final size:27
Alignment explanation
Indices: 47786018--47786074 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
47786008 ATCGTCATTC
*
47786018 TACCATACAGGGGTATTACGGTAATTT
1 TACCATACAGGGGCATTACGGTAATTT
*
47786045 TACCCTACAGGGGCATTACGGTAATTT
1 TACCATACAGGGGCATTACGGTAATTT
47786072 TAC
1 TAC
47786075 AAACTGGGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (27 bp):
TACCATACAGGGGCATTACGGTAATTT
Found at i:47787953 original size:60 final size:60
Alignment explanation
Indices: 47787841--47787956 Score: 137
Period size: 60 Copynumber: 1.9 Consensus size: 60
47787831 ACAATTTCAC
* * * *
47787841 TTGGGTCTCAGCCCTTATCAGAATCAATTGGGCCTAGCCAATTTTCAAAATCAGTAATAG
1 TTGGGTCTCAGCCCTTAACAGAATCAAGTGGGCCTAGCCAATGTACAAAATCAGTAATAG
* * *
47787901 TTGGGTCT-AGCCCATTAACAGAATCAGGTGGGCCTAAGCCCA-GTACAGAATCAGTA
1 TTGGGTCTCAGCCC-TTAACAGAATCAAGTGGGCCT-AGCCAATGTACAAAATCAGTA
47787957 TCAGATGTAG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
59 5 0.11
60 37 0.79
61 5 0.11
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (60 bp):
TTGGGTCTCAGCCCTTAACAGAATCAAGTGGGCCTAGCCAATGTACAAAATCAGTAATAG
Found at i:47788101 original size:22 final size:22
Alignment explanation
Indices: 47788076--47788128 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
47788066 CTAAGTCAAT
* *
47788076 AGGACGGCTCAATGTCATAGAC
1 AGGACGGCTCAACGCCATAGAC
*
47788098 AGGACGGCTCAACGCCGTAGAC
1 AGGACGGCTCAACGCCATAGAC
*
47788120 AGGATGGCT
1 AGGACGGCT
47788129 AAAGGCTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.32, T:0.15
Consensus pattern (22 bp):
AGGACGGCTCAACGCCATAGAC
Found at i:47788408 original size:27 final size:27
Alignment explanation
Indices: 47788378--47788434 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
47788368 ATCGTCATTC
*
47788378 TACCATACAGGGGTATTACGGTAATTT
1 TACCATACAGGGGCATTACGGTAATTT
*
47788405 TACCCTACAGGGGCATTACGGTAATTT
1 TACCATACAGGGGCATTACGGTAATTT
47788432 TAC
1 TAC
47788435 AAACTGGGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (27 bp):
TACCATACAGGGGCATTACGGTAATTT
Found at i:47790312 original size:60 final size:60
Alignment explanation
Indices: 47790200--47790315 Score: 137
Period size: 60 Copynumber: 1.9 Consensus size: 60
47790190 ACAATTTCAC
* * * *
47790200 TTGGGTCTCAGCCCTTATCAGAATCAATTGGGCCTAGCCAATTTTCAAAATCAGTAATAG
1 TTGGGTCTCAGCCCTTAACAGAATCAAGTGGGCCTAGCCAATGTACAAAATCAGTAATAG
* * *
47790260 TTGGGTCT-AGCCCATTAACAGAATCAGGTGGGCCTAAGCCCA-GTACAGAATCAGTA
1 TTGGGTCTCAGCCC-TTAACAGAATCAAGTGGGCCT-AGCCAATGTACAAAATCAGTA
47790316 TCAGATGTAG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
59 5 0.11
60 37 0.79
61 5 0.11
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (60 bp):
TTGGGTCTCAGCCCTTAACAGAATCAAGTGGGCCTAGCCAATGTACAAAATCAGTAATAG
Found at i:47790460 original size:22 final size:22
Alignment explanation
Indices: 47790435--47790487 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
47790425 CTAAGTCAAT
* *
47790435 AGGACGGCTCAATGTCATAGAC
1 AGGACGGCTCAACGCCATAGAC
*
47790457 AGGACGGCTCAACGCCGTAGAC
1 AGGACGGCTCAACGCCATAGAC
*
47790479 AGGATGGCT
1 AGGACGGCT
47790488 AAAGGCTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.32, T:0.15
Consensus pattern (22 bp):
AGGACGGCTCAACGCCATAGAC
Done.