Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 151 of 343
Found at i:50057882 original size:52 final size:51
Alignment explanation
Indices: 50057836--50058086 Score: 276
Period size: 52 Copynumber: 4.8 Consensus size: 51
50057826 GGGTATTTCA
*
50057836 GTAATTTCACAATCAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTA-AATCAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * * *
50057888 ATAATTTTTAAACTGAGGGT-AAACAGTAATTCT-TAAATCAAGGGTAAAACG
1 GTAA-TTTTAAA-TCAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * *
50057939 GTAATTTTACAAACGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTTTA-AATC-AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* *
50057992 GTAATTCTGTAAACTGAGGGTAAAACGGTAATTTTA-AAATC-AGGGTAAAACG
1 GTAATT-T-TAAA-TCAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
*
50058044 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCG
1 GTAATT-T-TAAATC-AGGGTAAAACGGTAATTCTATAAATCG
50058087 GAGTATTTGG
Statistics
Matches: 168, Mismatches: 19, Indels: 22
0.80 0.09 0.11
Matches are distributed among these distances:
50 5 0.03
51 28 0.17
52 70 0.42
53 42 0.25
54 21 0.12
55 2 0.01
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (51 bp):
GTAATTTTAAATCAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:50057908 original size:104 final size:105
Alignment explanation
Indices: 50057834--50058086 Score: 311
Period size: 106 Copynumber: 2.4 Consensus size: 105
50057824 AGGGGTATTT
* *
50057834 CAGTAATTTCACAATC-AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC-GATAATT-TT
1 CAGTAATTTCACAAACGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG-TAATTCTG
*
50057896 TAAACTGAGGGTAAACAGTAATTCTTAAATCAAGGGTAAAA
65 TAAACTGAGGGTAAACAGAAATTCTTAAATCAAGGGTAAAA
* * *
50057937 CGGTAATTTTACAAACGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 CAGTAATTTCACAAACGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGT
* *
50058002 AAACTGAGGGTAAAACGGTAATT-TTAAAATC-AGGGTAAAA
66 AAACTGAGGGT-AAACAGAAATTCTT-AAATCAAGGGTAAAA
* * * *
50058042 CGGTAATTCTGTA-AATCGAGGGTAAAACGGTAATTCTGTAAATCG
1 CAGTAATT-T-CACAAACGAGGGTAAAACGGTAATTCTATAAATCG
50058087 GAGTATTTGG
Statistics
Matches: 136, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
103 13 0.10
104 41 0.30
105 33 0.24
106 47 0.35
107 2 0.01
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.27
Consensus pattern (105 bp):
CAGTAATTTCACAAACGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGT
AAACTGAGGGTAAACAGAAATTCTTAAATCAAGGGTAAAA
Found at i:50058039 original size:79 final size:81
Alignment explanation
Indices: 50057846--50058085 Score: 345
Period size: 79 Copynumber: 3.0 Consensus size: 81
50057836 GTAATTTCAC
* * * *
50057846 AATC-AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATT-TTTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGT
50057908 -AAACAGTAATTCT-TA
65 AAAACAGTAATTCTGTA
50057923 AATCAAGGGTAAAACGGTAATTTTACAAA-CGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
50057987 AAACAGTAATTCTGTA
66 AAACAGTAATTCTGTA
*
50058003 AA-CTGAGGGTAAAACGGTAATTTTA-AAATC-AGGGTAAAACGGTAATTCTGTAAATCGAGGGT
1 AATC-AAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
*
50058065 AAAACGGTAATTCTGTA
65 AAAACAGTAATTCTGTA
50058082 AATC
1 AATC
50058086 GGAGTATTTG
Statistics
Matches: 149, Mismatches: 6, Indels: 13
0.89 0.04 0.08
Matches are distributed among these distances:
77 22 0.15
78 33 0.22
79 68 0.46
80 26 0.17
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.27
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:50060078 original size:6 final size:6
Alignment explanation
Indices: 50060067--50060188 Score: 97
Period size: 6 Copynumber: 19.8 Consensus size: 6
50060057 TATCATAACT
* *
50060067 AGAATC AGAATC AGAATC AGAATT AGAATC AGAATC AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * * * *
50060116 AAAATC AGAACC AGAATT AGAATT AGGTAA-C AGAATC GGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
50060165 AGGTAA-C AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
50060189 GTGAATGCAA
Statistics
Matches: 93, Mismatches: 14, Indels: 18
0.74 0.11 0.14
Matches are distributed among these distances:
5 5 0.05
6 76 0.82
7 8 0.09
8 4 0.04
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:50060079 original size:18 final size:18
Alignment explanation
Indices: 50060067--50060188 Score: 97
Period size: 19 Copynumber: 6.6 Consensus size: 18
50060057 TATCATAACT
50060067 AGAATCAGAATCAGAATC
1 AGAATCAGAATCAGAATC
*
50060085 AGAATTAGAATCAGAATC
1 AGAATCAGAATCAGAATC
* *
50060103 AG-GTGACAGAATCAAAATC
1 AGAAT--CAGAATCAGAATC
* * *
50060122 AGAACCAGAATTAGAATT
1 AGAATCAGAATCAGAATC
*
50060140 AGGTAA-CAGAATCGGAATC
1 A-G-AATCAGAATCAGAATC
*
50060159 AGTATCAGGTAA-CAGAATC
1 AGAATCA-G-AATCAGAATC
50060178 AGAATCAGAAT
1 AGAATCAGAAT
50060189 GTGAATGCAA
Statistics
Matches: 80, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
17 4 0.05
18 34 0.43
19 38 0.47
20 4 0.05
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.19
Consensus pattern (18 bp):
AGAATCAGAATCAGAATC
Found at i:50060114 original size:37 final size:37
Alignment explanation
Indices: 50060072--50060160 Score: 115
Period size: 37 Copynumber: 2.4 Consensus size: 37
50060062 TAACTAGAAT
** *
50060072 CAGAATCAGAATCAGAATTAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAACCAGAATCAGAATCAGGTAA
* * *
50060109 CAGAATCAAAATCAGAACCAGAATTAGAATTAGGTAA
1 CAGAATCAGAATCAGAACCAGAATCAGAATCAGGTAA
*
50060146 CAGAATCGGAATCAG
1 CAGAATCAGAATCAG
50060161 TATCAGGTAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (37 bp):
CAGAATCAGAATCAGAACCAGAATCAGAATCAGGTAA
Found at i:50060149 original size:25 final size:25
Alignment explanation
Indices: 50060121--50060188 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
50060111 GAATCAAAAT
* * *
50060121 CAGAACCAGAATTAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
50060146 CAGAATCGGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
50060171 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
50060189 GTGAATGCAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:50060365 original size:27 final size:27
Alignment explanation
Indices: 50060300--50060357 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
50060290 AGCATGGCTG
* * *
50060300 CCAGA-ACAGATATCGTGACAGAGTCA
1 CCAGATACAGATATTGTGGCAGAGCCA
50060326 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATATTGTGGCAGAGCCA
50060353 CCAGA
1 CCAGA
50060358 ATTAGATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATATTGTGGCAGAGCCA
Found at i:50060764 original size:27 final size:26
Alignment explanation
Indices: 50060683--50060765 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
50060673 TCGATTGGTC
* * *
50060683 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
*
50060709 ATACAGATATTGTGGCAGAGCCACTAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
50060736 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
50060763 AAC
1 AAC
50060766 GCTTCTTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:50060994 original size:27 final size:27
Alignment explanation
Indices: 50060964--50061158 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
50060954 GGGGCAAAAT
* * *
50060964 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
50060991 GGTAATTCTACCCTACAAGGGT-TTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50061017 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50061044 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50061071 GGTAATTCTATCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50061098 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50061125 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50061152 AGTAATT
1 GGTAATT
50061159 TCACAATCAA
Statistics
Matches: 148, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 24 0.16
27 124 0.84
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:50061193 original size:27 final size:27
Alignment explanation
Indices: 50061163--50061437 Score: 290
Period size: 27 Copynumber: 10.2 Consensus size: 27
50061153 GTAATTTCAC
*
50061163 AATCAAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTATA
* *
50061190 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTATA
* *
50061217 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAACGA-TAATTCTATA
* * * *
50061244 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGATAATTCTATA
* * *
50061271 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGATAATTCTATA
* *
50061298 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTATA
*
50061325 AATCGAGGGTAAAAC-AGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTATA
* *
50061352 AA-CTGAGGGTAAAATGATAATTTTA-A
1 AATC-GAGGGTAAAACGATAATTCTATA
*
50061378 CAATCGAGGGTAAAACGGTAATTCTATA
1 -AATCGAGGGTAAAACGATAATTCTATA
* *
50061406 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTATA
50061433 AATCG
1 AATCG
50061438 GGAGTATTTT
Statistics
Matches: 214, Mismatches: 24, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.04
27 198 0.93
28 8 0.04
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTATA
Found at i:50061428 original size:81 final size:80
Alignment explanation
Indices: 50061163--50061437 Score: 358
Period size: 81 Copynumber: 3.4 Consensus size: 80
50061153 GTAATTTCAC
* * *
50061163 AATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTT-AAAATC-GAGGGT
*
50061227 -AAACTAGTAATTCTGTA
64 AAAAC-GGTAATTCTGTA
* ** *
50061244 AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTT-AAAATCGAGGGTA
50061309 AAACGGTAATTCTGTA
65 AAACGGTAATTCTGTA
* * *
50061325 AATCGAGGGTAAAACAGTAATTCTGTAAA-CTGAGGGTAAAATGATAATTTTAACAATCGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGATAATTTTAA-AATCGAGGGT
*
50061389 AAAACGGTAATTCTATA
64 AAAACGGTAATTCTGTA
*
50061406 AATCGAGGGTAAAACGGTAATTCTGTAAATCG
1 AATCAAGGGTAAAACGGTAATTCTGTAAATCG
50061438 GGAGTATTTT
Statistics
Matches: 173, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
80 3 0.02
81 164 0.95
82 6 0.03
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.27
Consensus pattern (80 bp):
AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTAAAATCGAGGGTAA
AACGGTAATTCTGTA
Found at i:50061454 original size:54 final size:54
Alignment explanation
Indices: 50061163--50061437 Score: 326
Period size: 54 Copynumber: 5.1 Consensus size: 54
50061153 GTAATTTCAC
* * * *
50061163 AATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
* * * * **
50061217 AA-CTGAGGGT-AAACTAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACA
1 AATC-GAGGGTAAAAC-GGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
* *
50061271 AATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
* * * *
50061325 AATCGAGGGTAAAACAGTAATTCTGTAAA-CTGAGGGTAAAATGATAATT-T-TAA
1 AATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTGT-A
50061378 CAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
1 -AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
50061433 AATCG
1 AATCG
50061438 GGAGTATTTT
Statistics
Matches: 185, Mismatches: 26, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
52 1 0.01
53 8 0.04
54 167 0.90
55 8 0.04
56 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.27
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
Found at i:50061454 original size:81 final size:81
Alignment explanation
Indices: 50061163--50061468 Score: 345
Period size: 81 Copynumber: 3.8 Consensus size: 81
50061153 GTAATTTCAC
* * * * * *
50061163 AATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTTTGTA-AA-CTGAGGG
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTT-AACAATC-GAGGG
*
50061226 T-AAACTAGTAATTCTGTA
64 TAAAAC-GGTAATTCTGTA
* * ** * *
50061244 AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAACAATCGAGGGTA
50061309 AAACGGTAATTCTGTA
66 AAACGGTAATTCTGTA
* *
50061325 AATCGAGGGTAAAACAGTAATTCTGTAAA-CTGAGGGTAAAATGATAATTTTAACAATCGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAATGGTAATTTTAACAATCGAGGGT
*
50061389 AAAACGGTAATTCTATA
65 AAAACGGTAATTCTGTA
***
50061406 AATCGAGGGTAAAACGGTAATTCTGTAAATCG-GGAGTATTTTGGTAATTTT-ACAAGTCGAGGG
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGG-GTAAAATGGTAATTTTAACAA-TCGAGGG
50061469 CATTTCAGTA
Statistics
Matches: 198, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
80 8 0.04
81 184 0.93
82 6 0.03
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAACAATCGAGGGTA
AAACGGTAATTCTGTA
Found at i:50066540 original size:16 final size:15
Alignment explanation
Indices: 50066518--50066562 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
50066508 ACAAAATTGG
50066518 AAAGATAAAAAATAA
1 AAAGATAAAAAATAA
* *
50066533 AGATGATAAATAATAA
1 A-AAGATAAAAAATAA
*
50066549 AAAGATGAAAAATA
1 AAAGATAAAAAATA
50066563 TCATTATTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.18
Consensus pattern (15 bp):
AAAGATAAAAAATAA
Found at i:50067201 original size:13 final size:13
Alignment explanation
Indices: 50067183--50067222 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
50067173 AATAATTATT
50067183 ATAATATAATATA
1 ATAATATAATATA
50067196 ATAATATAATATA
1 ATAATATAATATA
* *
50067209 ATAACATAAAATA
1 ATAATATAATATA
50067222 A
1 A
50067223 AAGAAATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (13 bp):
ATAATATAATATA
Found at i:50067222 original size:18 final size:18
Alignment explanation
Indices: 50067182--50067222 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
50067172 TAATAATTAT
*
50067182 TATAATATAATATAATAA
1 TATAATATAATAAAATAA
*
50067200 TATAATATAATAACATAA
1 TATAATATAATAAAATAA
*
50067218 AATAA
1 TATAA
50067223 AAGAAATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (18 bp):
TATAATATAATAAAATAA
Found at i:50067235 original size:21 final size:20
Alignment explanation
Indices: 50067206--50067252 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
50067196 ATAATATAAT
50067206 ATAATAACATAAAATAAAAGAA
1 ATAA-AACATAAAAT-AAAGAA
* *
50067228 ATAAAACATGAAATAAATAA
1 ATAAAACATAAAATAAAGAA
50067248 ATAAA
1 ATAAA
50067253 GAAACAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 10 0.43
21 9 0.39
22 4 0.17
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.19
Consensus pattern (20 bp):
ATAAAACATAAAATAAAGAA
Found at i:50070386 original size:93 final size:93
Alignment explanation
Indices: 50070273--50070444 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50070263 CGCCCATAAG
* *
50070273 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50070338 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
50070366 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50070431 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
50070445 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:50070441 original size:46 final size:46
Alignment explanation
Indices: 50070266--50070441 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
50070256 TGTAACCCGC
* * *
50070266 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
50070312 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
50070362 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50070405 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
50070442 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:50077424 original size:46 final size:46
Alignment explanation
Indices: 50077357--50077531 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
50077347 TGTAACCCGC
*
50077357 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
50077403 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
50077453 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
50077496 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
50077532 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:50077477 original size:93 final size:93
Alignment explanation
Indices: 50077364--50077535 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
50077354 CGCCCATAAG
* * *
50077364 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50077429 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
50077457 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50077522 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
50077536 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:50091747 original size:46 final size:46
Alignment explanation
Indices: 50091598--50091808 Score: 178
Period size: 46 Copynumber: 4.5 Consensus size: 46
50091588 GTTGTTGGCT
** * * *
50091598 AGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAACCTCGAGT-CGAGAGCC
* * * * * * *
50091644 AGTGTAAGACTATGTCTGGGACATTGCGTCAGCATTGAGACGAGAGCT
1 AGTGTAAGAC-ATGTTTGGGACA-TGCATCAACCTCGAGTCGAGAGCC
50091692 AGTGTAAGACATGTTTGGGACATGCATCAACCTCGAGTCGTA-AGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAACCTCGAGTCG-AGAGCC
* * * * *
50091738 AGTGTAAGACATGTCTGGGACATGCATCGA-CTATGAGAT-GATAGTC
1 AGTGTAAGACATGTTTGGGACATGCATCAACCT-CGAG-TCGAGAGCC
50091784 AGTGTAAGACCATGTTTGGGACATG
1 AGTGTAAGA-CATGTTTGGGACATG
50091809 GCAACGACTT
Statistics
Matches: 135, Mismatches: 22, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
45 3 0.02
46 70 0.52
47 38 0.28
48 23 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGGACATGCATCAACCTCGAGTCGAGAGCC
Found at i:50091822 original size:47 final size:46
Alignment explanation
Indices: 50091737--50091857 Score: 133
Period size: 47 Copynumber: 2.6 Consensus size: 46
50091727 AGTCGTAAGC
* * *
50091737 CAGTGTAAGACATGTCTGGGACAT-GCATCGACTATGAGATGAT-AGT
1 CAGTGTAAGACATGTTTGGGACATGGCAACGACTATGAGAT-ATGA-A
50091783 CAGTGTAAGACCATGTTTGGGACATGGCAACGACT-TGAGATATGAA
1 CAGTGTAAGA-CATGTTTGGGACATGGCAACGACTATGAGATATGAA
*
50091829 CTAGTGTAACATCATG-TTGGGACATGGCA
1 C-AGTGTAAGA-CATGTTTGGGACATGGCA
50091858 TCGGCACCTT
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
46 26 0.39
47 32 0.48
48 8 0.12
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26
Consensus pattern (46 bp):
CAGTGTAAGACATGTTTGGGACATGGCAACGACTATGAGATATGAA
Found at i:50091859 original size:140 final size:140
Alignment explanation
Indices: 50091598--50091859 Score: 311
Period size: 140 Copynumber: 1.9 Consensus size: 140
50091588 GTTGTTGGCT
* * * *
50091598 AGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACTATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
* * *
50091663 GACATTGCGTCAGCATTGAGACGAGAGCTAGTGTAAGACATGTTTGGGACATGCATCAACCTCGA
66 GACATTGCGTCAACATTGAGACGAGAACTAGTGTAACACATGTTTGGGACATGCATCAACCTCGA
50091728 GTCGTAAGCC
131 GTCGTAAGCC
* * * * *
50091738 AGTGTAAGACATGTCTGGGACATGCATCGACTATGA-GATGATAGTCAGTGTAAGACCATGTTTG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCA-CATGATGAGAGCCAGTGTAAGACCATGTCTG
*
50091802 GGACA-TG-G-CAACGACTTGAGA-TATGAACTAGTGTAACATCATG-TTGGGACATGGCATC
65 GGACATTGCGTCAAC-A-TTGAGACGA-GAACTAGTGTAACA-CATGTTTGGGACAT-GCATC
50091860 GGCACCTTAC
Statistics
Matches: 103, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
137 3 0.03
138 3 0.03
139 29 0.28
140 67 0.65
141 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATTGCGTCAACATTGAGACGAGAACTAGTGTAACACATGTTTGGGACATGCATCAACCTCGA
GTCGTAAGCC
Found at i:50099348 original size:47 final size:45
Alignment explanation
Indices: 50099279--50099440 Score: 166
Period size: 46 Copynumber: 3.5 Consensus size: 45
50099269 ATTATTGGTT
*
50099279 AGTGTAAGACATGTC-GGGACATGCATCGGCCACATTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGATAGCC
* * * * * * *
50099324 AATGTAAGACCATGTCTGGGACATGGCAT-TGACAGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAGATGATAGCC
* * *
50099370 AGTGTAAGACATGTCTGGCACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGATGATAGCC
50099416 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
50099441 GCATTGACTT
Statistics
Matches: 92, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
44 4 0.04
45 23 0.25
46 36 0.39
47 25 0.27
48 4 0.04
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGATAGCC
Found at i:50099411 original size:92 final size:91
Alignment explanation
Indices: 50099278--50099448 Score: 272
Period size: 92 Copynumber: 1.9 Consensus size: 91
50099268 TATTATTGGT
* *
50099278 TAGTGTAAGACATGTCGGGACATGCATCGGCCACATTATGATAGCCAATGTAAGACCATGTCTGG
1 TAGTGTAAGACATGTCGGCACATGCATCGGCCACATGATGATAGCCAATGTAAGACCATGTCTGG
50099343 GACATGGCATTGACAGAGACGAGAGC
66 GACATGGCATTGACAGAGACGAGAGC
* * *
50099369 TAGTGTAAGACATGTCTGGCACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCT
1 TAGTGTAAGACATGTC-GGCACATGCATCGGCCAC-ATGATGATAGCCAATGTAAGACCATGTCT
50099433 GGGACATGGCATTGAC
64 GGGACATGGCATTGAC
50099449 TTGAGATATG
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
91 16 0.22
92 56 0.77
93 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (91 bp):
TAGTGTAAGACATGTCGGCACATGCATCGGCCACATGATGATAGCCAATGTAAGACCATGTCTGG
GACATGGCATTGACAGAGACGAGAGC
Found at i:50099455 original size:47 final size:47
Alignment explanation
Indices: 50099315--50099479 Score: 185
Period size: 47 Copynumber: 3.6 Consensus size: 47
50099305 CGGCCACATT
50099315 ATGATAGCCAATGTAAGACCATGTCTGGGACATGGCATTGAC-AGAG
1 ATGATAGCCAATGTAAGACCATGTCTGGGACATGGCATTGACTAGAG
* * * * * * *
50099361 ACGAGAGCTAGTGTAAGA-CATGTCTGGCACAT-GCATCGGCTACGAG
1 ATGATAGCCAATGTAAGACCATGTCTGGGACATGGCATTGACTA-GAG
* * *
50099407 ATGATAGTCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTGAG
1 ATGATAGCCAATGTAAGACCATGTCTGGGACATGGCATTGACTAGAG
*
50099454 AT-ATGAGCCAATGTAGGACCATGTCT
1 ATGAT-AGCCAATGTAAGACCATGTCT
50099480 TGAGATAACG
Statistics
Matches: 96, Mismatches: 18, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
44 6 0.06
45 14 0.15
46 33 0.34
47 36 0.38
48 7 0.07
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
ATGATAGCCAATGTAAGACCATGTCTGGGACATGGCATTGACTAGAG
Found at i:50102791 original size:38 final size:38
Alignment explanation
Indices: 50102740--50102826 Score: 165
Period size: 38 Copynumber: 2.3 Consensus size: 38
50102730 CGGTACTAGT
50102740 TGGAGTGTAGGTATGGGTAGGTTGATTTTATCCCCACA
1 TGGAGTGTAGGTATGGGTAGGTTGATTTTATCCCCACA
*
50102778 TGGAGTGTAGGTATGGGTGGGTTGATTTTATCCCCACA
1 TGGAGTGTAGGTATGGGTAGGTTGATTTTATCCCCACA
50102816 TGGAGTGTAGG
1 TGGAGTGTAGG
50102827 GTTGGACAGA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.20, C:0.11, G:0.36, T:0.33
Consensus pattern (38 bp):
TGGAGTGTAGGTATGGGTAGGTTGATTTTATCCCCACA
Found at i:50106764 original size:21 final size:20
Alignment explanation
Indices: 50106735--50106781 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
50106725 ATATAATAAT
50106735 ATAATAACATAAAATAAAAGAA
1 ATAA-AACATAAAAT-AAAGAA
* *
50106757 ATAAAACATGAAATAAATAA
1 ATAAAACATAAAATAAAGAA
50106777 ATAAA
1 ATAAA
50106782 TAAACAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 10 0.43
21 9 0.39
22 4 0.17
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.19
Consensus pattern (20 bp):
ATAAAACATAAAATAAAGAA
Found at i:50108237 original size:5 final size:5
Alignment explanation
Indices: 50108229--50108314 Score: 172
Period size: 5 Copynumber: 17.2 Consensus size: 5
50108219 TAATTGTGCC
50108229 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
50108279 TATTA TATTA TATTA TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA T
50108315 TTTTAAATAT
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 81 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:50108922 original size:21 final size:21
Alignment explanation
Indices: 50108894--50108945 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
50108884 TTTTTTCTAA
50108894 GATG-TAAATTGGACTAAATT
1 GATGTTAAATTGGACTAAATT
* *
50108914 GA-GTTTAAATTGTATTAAATT
1 GATG-TTAAATTGGACTAAATT
50108935 GATGTTAAATT
1 GATGTTAAATT
50108946 TACTCGTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 1 0.04
20 2 0.07
21 23 0.85
22 1 0.04
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.42
Consensus pattern (21 bp):
GATGTTAAATTGGACTAAATT
Found at i:50109978 original size:16 final size:15
Alignment explanation
Indices: 50109957--50110002 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
50109947 TCTACATGAA
50109957 ATACATGAAAATGATG
1 ATACATGAAAAT-ATG
*
50109973 ATACATGATAAT-TG
1 ATACATGAAAATATG
*
50109987 ATATATGAAAATATG
1 ATACATGAAAATATG
50110002 A
1 A
50110003 GATGATGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
14 12 0.46
15 3 0.12
16 11 0.42
ACGTcount: A:0.50, C:0.04, G:0.15, T:0.30
Consensus pattern (15 bp):
ATACATGAAAATATG
Found at i:50110024 original size:29 final size:30
Alignment explanation
Indices: 50109957--50110025 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
50109947 TCTACATGAA
*
50109957 ATACATGAAAATGATGATACATGATAATTG
1 ATACATGAAAATGATGAGACATGATAATTG
* * *
50109987 ATATATGAAAAT-ATGAGATGATGATATTTG
1 ATACATGAAAATGATGAGA-CATGATAATTG
50110017 -TACATGAAA
1 ATACATGAAA
50110026 TTTATTTGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
29 13 0.39
30 20 0.61
ACGTcount: A:0.46, C:0.04, G:0.17, T:0.32
Consensus pattern (30 bp):
ATACATGAAAATGATGAGACATGATAATTG
Found at i:50112738 original size:25 final size:25
Alignment explanation
Indices: 50112710--50112757 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
50112700 TACATAGTGA
50112710 ACAAG-CATAATCACATAACCATATC
1 ACAAGACATAATCACAT-ACCATATC
*
50112735 ACAAGACATTATCACATACCATA
1 ACAAGACATAATCACATACCATA
50112758 GACAAATAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.48, C:0.27, G:0.04, T:0.21
Consensus pattern (25 bp):
ACAAGACATAATCACATACCATATC
Found at i:50120752 original size:29 final size:28
Alignment explanation
Indices: 50120710--50120881 Score: 202
Period size: 29 Copynumber: 6.0 Consensus size: 28
50120700 GTGCTAAACA
* *
50120710 ATGGTTGTAACCATCCCTTTTCATATTCG
1 ATGGTCGTCACCATCCCTTTTCATATT-G
50120739 ATGGTCGTCACCATCCCTTTTCATAGTTG
1 ATGGTCGTCACCATCCCTTTTCATA-TTG
50120768 ATGGTCGTCACCATCCCTTTTCATAATTG
1 ATGGTCGTCACCATCCCTTTTCAT-ATTG
* * * * * *
50120797 ATAGCCG-AAGCTATCCCTTTTCAAAGTCG
1 ATGGTCGTCA-CCATCCCTTTTCATA-TTG
*
50120826 ATGGTCGTCACCTTCCCTTTTCATAGTTG
1 ATGGTCGTCACCATCCCTTTTCATA-TTG
50120855 ATGGTCGTCACCATCCCTTTTCATATT
1 ATGGTCGTCACCATCCCTTTTCATATT
50120882 CGATAGCCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
28 4 0.03
29 114 0.93
30 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (28 bp):
ATGGTCGTCACCATCCCTTTTCATATTG
Found at i:50120813 original size:58 final size:58
Alignment explanation
Indices: 50120751--50120936 Score: 182
Period size: 58 Copynumber: 3.2 Consensus size: 58
50120741 GGTCGTCACC
50120751 ATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATTGATAGCCGAAGCT
1 ATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATTGATAGCCGAAGCT
* * * * * * * *
50120809 ATCCCTTTTCAAAGTCGATGGTCGTCACCTTCCCTTTTCATAGTTGATGGTCGTCA-CC
1 ATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATTGATAGCCG-AAGCT
* *** * *
50120867 ATCCCTTTTCATA-TTCGATAG-CCAAAGCTATCCCTTTTCAT-ATTCGATAGCCAAAGCT
1 ATCCCTTTTCATAGTT-GATGGTCGTCA-CCATCCCTTTTCATAATT-GATAGCCGAAGCT
50120925 ATCCCTTTTCAT
1 ATCCCTTTTCAT
50120937 TTTCGGTAGC
Statistics
Matches: 101, Mismatches: 22, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
57 6 0.06
58 94 0.93
59 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.13, T:0.37
Consensus pattern (58 bp):
ATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATTGATAGCCGAAGCT
Found at i:50120914 original size:87 final size:87
Alignment explanation
Indices: 50120722--50120914 Score: 334
Period size: 87 Copynumber: 2.2 Consensus size: 87
50120712 GGTTGTAACC
50120722 ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTT
1 ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTT
*
50120787 TTCATAATTGATAGCCGAAGCT
66 TTCATAATTGATAGCCAAAGCT
* * *
50120809 ATCCCTTTTCAAAGTCGATGGTCGTCACCTTCCCTTTTCATAGTTGATGGTCGTCACCATCCCTT
1 ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTT
50120874 TTCAT-ATTCGATAGCCAAAGCT
66 TTCATAATT-GATAGCCAAAGCT
50120896 ATCCCTTTTCATATTCGAT
1 ATCCCTTTTCATATTCGAT
50120915 AGCCAAAGCT
Statistics
Matches: 99, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
86 3 0.03
87 96 0.97
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.37
Consensus pattern (87 bp):
ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTT
TTCATAATTGATAGCCAAAGCT
Found at i:50120930 original size:87 final size:88
Alignment explanation
Indices: 50120751--50120936 Score: 270
Period size: 87 Copynumber: 2.1 Consensus size: 88
50120741 GGTCGTCACC
*
50120751 ATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATTGATAGCCGAAGCTATCCCTT
1 ATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATTGATAGCCAAAGCTATCCCTT
* ***
50120816 TTCAAAGTCGATGGTCGTCACCT
66 TTCAAAGTCGATAGTCCAAACCT
50120839 -TCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCAT-ATTCGATAGCCAAAGCTATCCCT
1 ATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATT-GATAGCCAAAGCTATCCCT
* * *
50120902 TTTCATATTCGATAG-CCAAAGCT
65 TTTCAAAGTCGATAGTCCAAACCT
50120925 ATCCCTTTTCAT
1 ATCCCTTTTCAT
50120937 TTTCGGTAGC
Statistics
Matches: 88, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
86 7 0.08
87 81 0.92
ACGTcount: A:0.22, C:0.28, G:0.13, T:0.37
Consensus pattern (88 bp):
ATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATTGATAGCCAAAGCTATCCCTT
TTCAAAGTCGATAGTCCAAACCT
Found at i:50120966 original size:29 final size:29
Alignment explanation
Indices: 50120867--50120965 Score: 162
Period size: 29 Copynumber: 3.4 Consensus size: 29
50120857 GGTCGTCACC
50120867 ATCCCTTTTCATATTCGATAGCCAAAGCT
1 ATCCCTTTTCATATTCGATAGCCAAAGCT
50120896 ATCCCTTTTCATATTCGATAGCCAAAGCT
1 ATCCCTTTTCATATTCGATAGCCAAAGCT
* * **
50120925 ATCCCTTTTCATTTTCGGTAGCTGAAGCT
1 ATCCCTTTTCATATTCGATAGCCAAAGCT
50120954 ATCCCTTTTCAT
1 ATCCCTTTTCAT
50120966 TGGTCAATAA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.38
Consensus pattern (29 bp):
ATCCCTTTTCATATTCGATAGCCAAAGCT
Found at i:50124435 original size:25 final size:25
Alignment explanation
Indices: 50124385--50124435 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
50124375 CTATTTCGAT
**
50124385 CCATATAACGGGAAGCTCATGTGAG
1 CCATATAACGGGAAGCTCATAAGAG
*
50124410 CCATGTAACGGGAAGCTCATAAGAG
1 CCATATAACGGGAAGCTCATAAGAG
50124435 C
1 C
50124436 TGTAATCAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.18
Consensus pattern (25 bp):
CCATATAACGGGAAGCTCATAAGAG
Found at i:50132269 original size:15 final size:15
Alignment explanation
Indices: 50132220--50132290 Score: 61
Period size: 15 Copynumber: 4.7 Consensus size: 15
50132210 GGTACTGTAA
*
50132220 TTTGGATTTCCTTAT
1 TTTGGATTTCTTTAT
** *
50132235 CATGGATTTATTTAT
1 TTTGGATTTCTTTAT
*
50132250 CTTGGATTTCTTTAT
1 TTTGGATTTCTTTAT
** **
50132265 TTTGGGCTTCTCCAT
1 TTTGGATTTCTTTAT
50132280 TTTGGATTTCT
1 TTTGGATTTCT
50132291 CCATCTTGGC
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.14, C:0.14, G:0.15, T:0.56
Consensus pattern (15 bp):
TTTGGATTTCTTTAT
Found at i:50132291 original size:15 final size:15
Alignment explanation
Indices: 50132251--50132299 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
50132241 TTTATTTATC
**
50132251 TTGGATTTCTTTATT
1 TTGGATTTCTCCATT
**
50132266 TTGGGCTTCTCCATT
1 TTGGATTTCTCCATT
*
50132281 TTGGATTTCTCCATC
1 TTGGATTTCTCCATT
50132296 TTGG
1 TTGG
50132300 CTTTTTGGTA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.10, C:0.18, G:0.18, T:0.53
Consensus pattern (15 bp):
TTGGATTTCTCCATT
Found at i:50134130 original size:42 final size:42
Alignment explanation
Indices: 50134084--50134173 Score: 144
Period size: 42 Copynumber: 2.1 Consensus size: 42
50134074 ATGGTTCGAG
50134084 AACAAACCGGAATCAATAAAAACTTTCCGATCACTTAAACAA
1 AACAAACCGGAATCAATAAAAACTTTCCGATCACTTAAACAA
** *
50134126 AACAAACTTGAATCAATAAAAACTTTTCGATCACTTAAACAA
1 AACAAACCGGAATCAATAAAAACTTTCCGATCACTTAAACAA
*
50134168 ATCAAA
1 AACAAA
50134174 ACAATTTACT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.51, C:0.21, G:0.06, T:0.22
Consensus pattern (42 bp):
AACAAACCGGAATCAATAAAAACTTTCCGATCACTTAAACAA
Found at i:50134470 original size:21 final size:21
Alignment explanation
Indices: 50134444--50134486 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
50134434 TAACCATGCC
50134444 ATTTATTTTCTTTAAAATTAG
1 ATTTATTTTCTTTAAAATTAG
50134465 ATTTATTTTCTTTAAAATTAG
1 ATTTATTTTCTTTAAAATTAG
50134486 A
1 A
50134487 CTCAATAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.56
Consensus pattern (21 bp):
ATTTATTTTCTTTAAAATTAG
Found at i:50135224 original size:16 final size:16
Alignment explanation
Indices: 50135205--50135235 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50135195 CTTCTTCACT
50135205 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
50135221 TACTTACTTACTTAA
1 TACTCACTTACTTAA
50135236 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:50135241 original size:20 final size:20
Alignment explanation
Indices: 50135202--50135241 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
50135192 AAACTTCTTC
* *
50135202 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
50135222 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
50135242 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:50135352 original size:23 final size:24
Alignment explanation
Indices: 50135314--50135358 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
50135304 TTTGCTCTTC
*
50135314 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
50135338 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
50135359 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:50135633 original size:55 final size:51
Alignment explanation
Indices: 50135432--50135636 Score: 193
Period size: 53 Copynumber: 3.9 Consensus size: 51
50135422 ACATGGGTAC
* * * * *
50135432 CTTACCATGGCCATGACTTGTCATGGTCTTACATG-GT--AT-CCTTTTGAAA
1 CTTACAAT-GCCATGTCTTGACATGGTCTTACATGTGTCCTTGCCTTATG-AA
*
50135481 CTTACCATGCCATGTCTTGACATGGTCTTACATGGTGTCCTTGCCTTATGAA
1 CTTACAATGCCATGTCTTGACATGGTCTTACAT-GTGTCCTTGCCTTATGAA
* * * * *
50135533 CTCACCAATGTCATGCCTTGGCATGGTCTTACATGGGTCCTTTGCCTTATAGTAA
1 CTTA-CAATGCCATGTCTTGACATGGTCTTACATGTGTCC-TTGCCTTAT-G-AA
*
50135588 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA
1 CTTA-CAATGCCATGTCTTGACATGGTCTTACATG-TGTCCTTGCCTTA
50135637 GAAACCTTAC
Statistics
Matches: 129, Mismatches: 17, Indels: 14
0.81 0.11 0.09
Matches are distributed among these distances:
48 23 0.18
49 9 0.07
50 2 0.02
52 11 0.09
53 40 0.31
54 1 0.01
55 40 0.31
56 3 0.02
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.37
Consensus pattern (51 bp):
CTTACAATGCCATGTCTTGACATGGTCTTACATGTGTCCTTGCCTTATGAA
Found at i:50135635 original size:108 final size:109
Alignment explanation
Indices: 50135479--50135678 Score: 289
Period size: 108 Copynumber: 1.8 Consensus size: 109
50135469 ATCCTTTTGA
* *
50135479 AACTTACCATGCCATGTCTTGACATGGTCTTACATGGTGTCCTTGCCTTATG-AA-CTCACCAAT
1 AACTTACAATGCCATGTCTTGACATGGTCTTACATGATGTCCTTGCCTTA-GAAACCTCACCAAT
*
50135542 GT-CATGCCTTGGCATGGTCTTACATGGGTCCTTTGCCTTATAGT
65 GTCCATGCCTTGCCATGGTCTTACATGGGTCCTTTGCCTTATAGT
* *
50135586 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTA-CAATGCCATGTCTTGACATGGTCTTACATGATGTCCTTGCCTTAGAAACCTCACCAAT
* * *
50135651 TTCCATGCCTTGCCATGGTTTTATATGG
65 GTCCATGCCTTGCCATGGTCTTACATGG
50135679 TATCCTTAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
107 7 0.09
108 43 0.53
109 9 0.11
110 22 0.27
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.36
Consensus pattern (109 bp):
AACTTACAATGCCATGTCTTGACATGGTCTTACATGATGTCCTTGCCTTAGAAACCTCACCAATG
TCCATGCCTTGCCATGGTCTTACATGGGTCCTTTGCCTTATAGT
Found at i:50135657 original size:55 final size:53
Alignment explanation
Indices: 50135432--50135685 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
50135422 ACATGGGTAC
* * *
50135432 CTTACC-ATGGCCATGACTTGTCATGGTCTTACATGGTATCCTT---TT-GAAA
1 CTTACCAAT-GCCATGCCTTGACATGGTCTTACATGGTGTCCTTGCCTTAGAAA
*
50135481 CTTACC-ATGCCATGTCTTGACATGGTCTTACATGGTGTCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTGTCCTTGCCTTA-GAAA
* * * *
50135533 CTCACCAATGTCATGCCTTGGCATGGTCTTACATGG-GTCCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTGTCC-TTGCC-T-TAGAAA
* * * *
50135588 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTGTCCTTGCCTTAGAAA
* * * * *
50135641 CCTTACCAATTTCCATGCCTTGCCATGGTTTTATATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTGTCCTT
50135686 AAACCCTAAT
Statistics
Matches: 169, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
48 31 0.18
49 8 0.05
51 2 0.01
52 11 0.07
53 37 0.22
54 10 0.06
55 67 0.40
56 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTGTCCTTGCCTTAGAAA
Found at i:50139043 original size:26 final size:26
Alignment explanation
Indices: 50139014--50139065 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
50139004 TCTCACTATT
*
50139014 TTTGGGTACAATAACAATATCTCAAA
1 TTTGGATACAATAACAATATCTCAAA
* *
50139040 TTTGTATAGAATAACAATATCTCAAA
1 TTTGGATACAATAACAATATCTCAAA
50139066 GTTGTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (26 bp):
TTTGGATACAATAACAATATCTCAAA
Found at i:50140576 original size:35 final size:35
Alignment explanation
Indices: 50140530--50140597 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
50140520 TGTTGCCCCG
* *
50140530 AAGGATATGTATACCATTTACATGATGTCGCCCTA
1 AAGGACATGTATACCATTTACACGATGTCGCCCTA
*
50140565 AAGGACATGTATACCATTTACACGGTGTCGCCC
1 AAGGACATGTATACCATTTACACGATGTCGCCC
50140598 CAAATGACCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (35 bp):
AAGGACATGTATACCATTTACACGATGTCGCCCTA
Found at i:50145500 original size:27 final size:28
Alignment explanation
Indices: 50145434--50145500 Score: 66
Period size: 29 Copynumber: 2.4 Consensus size: 28
50145424 CATACTTGAT
* *
50145434 CCTCCAAGAATTAGAGTACTATTCTCGAC
1 CCTCCAAGAATTAGAGAACTA-TCTCCAC
**
50145463 CCTCCGGGAATTAGAGAACTCA-C-CCAC
1 CCTCCAAGAATTAGAGAACT-ATCTCCAC
50145490 CCTCCAAGAAT
1 CCTCCAAGAAT
50145501 ATAGGAGTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
27 12 0.39
28 1 0.03
29 17 0.55
30 1 0.03
ACGTcount: A:0.31, C:0.33, G:0.15, T:0.21
Consensus pattern (28 bp):
CCTCCAAGAATTAGAGAACTATCTCCAC
Found at i:50148305 original size:46 final size:47
Alignment explanation
Indices: 50148236--50148407 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 47
50148226 TATGTGTGCT
* * *
50148236 AGTGTAAGACAAT-TCTGGAACATGCATTAGCCACAG-CATGAGAGCC
1 AGTGTAAGAC-ATGTCTGGGACATGCATCAGCCACAGAAATGAGAGCC
* * *
50148282 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGA-AATGAGAGCC
* * ** *
50148330 AGTGTAAGACATGTCTGGGGCATGCATC-GGCATTGAAATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGAAATGAGAGCC
50148376 AGTGTAAGACATGTCTGGGACATGCATCAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCC
50148408 TCGCGATATA
Statistics
Matches: 104, Mismatches: 16, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
45 5 0.05
46 60 0.58
47 6 0.06
48 31 0.30
49 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGAAATGAGAGCC
Found at i:50148338 original size:48 final size:48
Alignment explanation
Indices: 50148278--50148447 Score: 202
Period size: 48 Copynumber: 3.6 Consensus size: 48
50148268 ACAGCATGAG
*
50148278 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATTTA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATTCA
* * * * *
50148326 AGCCAGTGTAAGACATGTCTGGGGCATGCATCGGCATTGA-A-A-TGA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATTCA
* * *
50148371 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATATACA
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATTCA
* * *
50148420 AGCTAGTGTAAGACCTGTCTAGGACATG
1 AGCCAGTGTAAGACATGTCTGGGACATG
50148448 GCGTCAGCTT
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
45 2 0.02
46 35 0.34
47 2 0.02
48 63 0.61
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATTCA
Found at i:50148547 original size:49 final size:49
Alignment explanation
Indices: 50148458--50148582 Score: 169
Period size: 49 Copynumber: 2.5 Consensus size: 49
50148448 GCGTCAGCTT
* *
50148458 ACCTGTCTGGGACATGGCATCGACATTGATAGATGCAAGCCAGTGTAAG
1 ACCTGTCTGGGACATGGCATCGGCATTGATAGACGCAAGCCAGTGTAAG
* * * * *
50148507 ACCTGTATGGGACATGGCATCGGCCTTGCTATACGTAAGCCAGTGTAAG
1 ACCTGTCTGGGACATGGCATCGGCATTGATAGACGCAAGCCAGTGTAAG
*
50148556 ACTATGTCTGGGACATGGCATCGGCAT
1 AC-CTGTCTGGGACATGGCATCGGCAT
50148583 CTTAACCCAT
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
49 44 0.68
50 21 0.32
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.24
Consensus pattern (49 bp):
ACCTGTCTGGGACATGGCATCGGCATTGATAGACGCAAGCCAGTGTAAG
Found at i:50174476 original size:44 final size:44
Alignment explanation
Indices: 50174411--50174537 Score: 161
Period size: 42 Copynumber: 2.9 Consensus size: 44
50174401 GTTGACATTG
* * * *
50174411 ATCTGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCCTCG-
1 ATCTGAGATTTCGTGTAAGACCATGTTTGGGACACAGGCATCGT
* *
50174454 ATTTGAGATTTACGTGTAAGACCATGTTTGGGACATAGGCATCGT
1 ATCTGAGATTT-CGTGTAAGACCATGTTTGGGACACAGGCATCGT
*
50174499 ATCT-A-ATTTCGTGTAAGACCATGTTTGGGACAGAGGCAT
1 ATCTGAGATTTCGTGTAAGACCATGTTTGGGACACAGGCAT
50174538 TGATACAGAG
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
42 29 0.39
43 13 0.18
44 29 0.39
45 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (44 bp):
ATCTGAGATTTCGTGTAAGACCATGTTTGGGACACAGGCATCGT
Found at i:50175768 original size:401 final size:401
Alignment explanation
Indices: 50175016--50175816 Score: 1401
Period size: 401 Copynumber: 2.0 Consensus size: 401
50175006 GGTACTTTTA
*
50175016 TGTAACAGCCCGATTTAGGGCCAAAATAGAACAGTGGTTTCGAAACCACGAATCCGAGGTTGAAA
1 TGTAACAGCCCGATTTAGGGCCAAAAGAGAACAGTGGTTTCGAAACCACGAATCCGAGGTTGAAA
* * *
50175081 AAAATTAAAAAATTAAAATTATTTTGATTAAGTTTTTGTGTTTATATTATGATTTCATAATCGTG
66 AAAATTAAAAAATTAAAACTATTTTGATTAAGTTTTAGTGTTTATATTATGATTGCATAATCGTG
* *
50175146 TGAAAATTTCGTTGCGAAATTTGATCGATTGGGTGTTTAATTTGATGTTAAGGACTAAATTGAAA
131 TGAAAATTTCGTTGCAAAATTTGATCGATTAGGTGTTTAATTTGATGTTAAGGACTAAATTGAAA
*
50175211 TAGGTGAAAAATGTGTGTGTTCTAGTTCATAAAGTACTTGATTGAAATGGGGGTTTTAAGTAGAT
196 TAGGTGAAAAA-GTGTGTGTTCTAGTTCATAAAGTACTTGATTGAAATGGGGGTTTTAAGTAGAG
* *
50175276 GTCCTTAAATGGAATTAGACCATTATACTTTATATGGACAAATATTTGGACATGGATGGAATTTT
260 GTCCTTAAATGGAATTAGACCATTATACTTTATATGGACAAAAATTTGGACATGGATAGAATTTT
50175341 TAGAAAGTTTAGTAGTAAGGGCATTTTGGCCATTTGCATAATAAATGAAATAAAATGAG-AAAAT
325 TAGAAAGTTTAGTAGTAAGGGCATTTTGGCCATTTGCATAATAAATGAAATAAAATGAGAAAAAT
50175405 AACACAAAAAAT
390 AACACAAAAAAT
*
50175417 TGTAACAGCCCGATTTAGGGCCAAAACGA-AACAGTGGTTTCGAAACCACGAATCTGAGGTTGAA
1 TGTAACAGCCCGATTTAGGGCCAAAA-GAGAACAGTGGTTTCGAAACCACGAATCCGAGGTTG-A
50175481 AAAAAATTAAAAAATTAAAACTATTTTGATTAAGTTTTAGTGTTTATATTATGATTGCATAATCG
64 AAAAAATTAAAAAATTAAAACTATTTTGATTAAGTTTTAGTGTTTATATTATGATTGCATAATCG
* *
50175546 TGTGAAAATTTCGTTGCAAAATTTTATCGATTAGGTGTTTAATTTGATGTTTAGGACTAAATTGA
129 TGTGAAAATTTCGTTGCAAAATTTGATCGATTAGGTGTTTAATTTGATGTTAAGGACTAAATTGA
*
50175611 AATAGGTGAAAAA-TGTGTGTTCTAGTTCATAAAGTACTTGATTGAAATGGGGGTTTTAAGTATA
194 AATAGGTGAAAAAGTGTGTGTTCTAGTTCATAAAGTACTTGATTGAAATGGGGGTTTTAAGTAGA
*
50175675 GGTCCTTAAATGGAAATTAGACCATTATACTTTATATGGACAAAAATTTGGACTTGGATAGAATT
259 GGTCCTTAAATGG-AATTAGACCATTATACTTTATATGGACAAAAATTTGGACATGGATAGAATT
* *
50175740 TTTAGAAAGTTTAGTAGTAAGGGCATTTTGGTCATTTGCATAATAAATGAAATAAAATGGGAAAA
323 TTTAGAAAGTTTAGTAGTAAGGGCATTTTGGCCATTTGCATAATAAATGAAATAAAATGAGAAAA
50175805 ATAACACAAAAA
388 ATAACACAAAAA
50175817 TGTGTTCATC
Statistics
Matches: 380, Mismatches: 16, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
400 62 0.16
401 165 0.43
402 153 0.40
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (401 bp):
TGTAACAGCCCGATTTAGGGCCAAAAGAGAACAGTGGTTTCGAAACCACGAATCCGAGGTTGAAA
AAAATTAAAAAATTAAAACTATTTTGATTAAGTTTTAGTGTTTATATTATGATTGCATAATCGTG
TGAAAATTTCGTTGCAAAATTTGATCGATTAGGTGTTTAATTTGATGTTAAGGACTAAATTGAAA
TAGGTGAAAAAGTGTGTGTTCTAGTTCATAAAGTACTTGATTGAAATGGGGGTTTTAAGTAGAGG
TCCTTAAATGGAATTAGACCATTATACTTTATATGGACAAAAATTTGGACATGGATAGAATTTTT
AGAAAGTTTAGTAGTAAGGGCATTTTGGCCATTTGCATAATAAATGAAATAAAATGAGAAAAATA
ACACAAAAAAT
Found at i:50183185 original size:27 final size:27
Alignment explanation
Indices: 50183145--50183198 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
50183135 TGTCATGTGA
* *
50183145 AATTGAATGGTAAATTATTGTTACATG
1 AATTGAATGGTAAATTACTATTACATG
*
50183172 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGTAAATTACTATTACATG
50183199 GGTTGTATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.41
Consensus pattern (27 bp):
AATTGAATGGTAAATTACTATTACATG
Found at i:50183524 original size:49 final size:50
Alignment explanation
Indices: 50183447--50183690 Score: 296
Period size: 49 Copynumber: 4.9 Consensus size: 50
50183437 TATTGTGAGA
* **
50183447 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGG
* * ** * *
50183496 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCA-A
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-AGG
* * * **
50183547 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGG
*
50183597 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGG
* *
50183646 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
50183691 CCTTGTCTAC
Statistics
Matches: 165, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
49 83 0.50
50 47 0.28
51 35 0.21
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGG
Found at i:50192782 original size:30 final size:30
Alignment explanation
Indices: 50192748--50192844 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
50192738 AGCTCACTCC
50192748 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
50192778 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
50192808 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
50192838 TAGCTCA
1 TAGCTCA
50192845 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:50210817 original size:57 final size:58
Alignment explanation
Indices: 50210756--50210866 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
50210746 AAATTCACAT
* *
50210756 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
50210813 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
50210867 GTCATATTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 22 0.46
58 26 0.54
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:50210822 original size:29 final size:29
Alignment explanation
Indices: 50210759--50210866 Score: 139
Period size: 29 Copynumber: 3.8 Consensus size: 29
50210749 TTCACATACC
* * *
50210759 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
50210787 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
50210816 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
50210845 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
50210867 GTCATATTCA
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.01
28 17 0.24
29 51 0.73
30 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:50211131 original size:16 final size:16
Alignment explanation
Indices: 50211089--50211131 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
50211079 GTAGCCAAAC
*
50211089 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGACA
* *
50211105 TTTTGGATTTTCGACA
1 TTTCGGCTTTTCGACA
50211121 TTTCGGCTTTT
1 TTTCGGCTTTT
50211132 GCCGATTCAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.09, C:0.19, G:0.21, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCGACA
Found at i:50212393 original size:16 final size:17
Alignment explanation
Indices: 50212361--50212395 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
50212351 ACAAAAAAAG
*
50212361 TTTGGGATTTCGGGATT
1 TTTGGGATTTCGAGATT
50212378 TTTGGG-TTTCGAGATT
1 TTTGGGATTTCGAGATT
50212394 TT
1 TT
50212396 GGGGGCGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.11, C:0.06, G:0.31, T:0.51
Consensus pattern (17 bp):
TTTGGGATTTCGAGATT
Found at i:50225709 original size:31 final size:31
Alignment explanation
Indices: 50225674--50225741 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
50225664 AAATTTTGTT
*
50225674 ATTTTAGTCACTCTCGTTTA-ATAAGTTGTCA
1 ATTTTAGTCACTCCCG-TTAGATAAGTTGTCA
*
50225705 ATTTTAGTTACTCCCGTTAGATAAGTTGTCA
1 ATTTTAGTCACTCCCGTTAGATAAGTTGTCA
50225736 ATTTTA
1 ATTTTA
50225742 ATCGCTCTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
30 3 0.09
31 31 0.91
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (31 bp):
ATTTTAGTCACTCCCGTTAGATAAGTTGTCA
Found at i:50226285 original size:16 final size:16
Alignment explanation
Indices: 50226260--50226294 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
50226250 TAAACAATAT
*
50226260 ATTATTAATTTTTAAA
1 ATTATGAATTTTTAAA
50226276 ATTATGAATTTTTAAA
1 ATTATGAATTTTTAAA
50226292 ATT
1 ATT
50226295 TAAACTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (16 bp):
ATTATGAATTTTTAAA
Found at i:50229354 original size:40 final size:40
Alignment explanation
Indices: 50229291--50229471 Score: 231
Period size: 40 Copynumber: 4.5 Consensus size: 40
50229281 TATTCGAATG
* *
50229291 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
50229331 AAACCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
50229371 ATATCCGGGCTAAATCCCGAAGGCATTTATGTTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
50229411 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
50229451 ATATCC-GACTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50229472 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 13 0.11
40 105 0.88
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:50237576 original size:40 final size:40
Alignment explanation
Indices: 50237513--50237693 Score: 240
Period size: 40 Copynumber: 4.5 Consensus size: 40
50237503 TATTCGGATG
* *
50237513 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
50237553 AAACCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
50237593 ATATCCGGGCTAAATCCCGAAGGCATTTATGTTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
50237633 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
50237673 ATATCC-GGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50237694 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 14 0.12
40 105 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:50242846 original size:22 final size:22
Alignment explanation
Indices: 50242821--50242896 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
50242811 AAAGCATTGT
50242821 AGTGCTAAACAGAGAGCACAAG
1 AGTGCTAAACAGAGAGCACAAG
** *
50242843 AGTGCTAAGTAGAGAGCAC-CG
1 AGTGCTAAACAGAGAGCACAAG
* * *
50242864 AAGTGCTGAACAGAGAGGACAAA
1 -AGTGCTAAACAGAGAGCACAAG
*
50242887 AGTGTTAAAC
1 AGTGCTAAAC
50242897 CTGTACAAGC
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
21 1 0.02
22 40 0.98
ACGTcount: A:0.42, C:0.16, G:0.29, T:0.13
Consensus pattern (22 bp):
AGTGCTAAACAGAGAGCACAAG
Found at i:50243564 original size:22 final size:23
Alignment explanation
Indices: 50243537--50243579 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
50243527 CCTATGTTCA
50243537 AAATTAA-CAACTTTCACTTTAC
1 AAATTAATCAACTTTCACTTTAC
**
50243559 AAATTAATCATTTTTCACTTT
1 AAATTAATCAACTTTCACTTT
50243580 TAGGCTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (23 bp):
AAATTAATCAACTTTCACTTTAC
Found at i:50244914 original size:36 final size:36
Alignment explanation
Indices: 50244874--50244962 Score: 160
Period size: 36 Copynumber: 2.5 Consensus size: 36
50244864 TAAGTCTTTG
* *
50244874 TATTTTTAAAAATTTAAAATTTAGTTCTTATACTAT
1 TATTTTTAAGAATTTAAAATTTAGTTCTTATACCAT
50244910 TATTTTTAAGAATTTAAAATTTAGTTCTTATACCAT
1 TATTTTTAAGAATTTAAAATTTAGTTCTTATACCAT
50244946 TATTTTTAAGAATTTAA
1 TATTTTTAAGAATTTAA
50244963 TTTTCTATTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (36 bp):
TATTTTTAAGAATTTAAAATTTAGTTCTTATACCAT
Found at i:50246822 original size:20 final size:20
Alignment explanation
Indices: 50246799--50246837 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
50246789 TGAATTTTTA
*
50246799 AAAAATATCATAAAATTATT
1 AAAAATATAATAAAATTATT
* *
50246819 AAAATTTTAATAAAATTAT
1 AAAAATATAATAAAATTAT
50246838 AAGGTTCTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAATATAATAAAATTATT
Found at i:50246869 original size:10 final size:10
Alignment explanation
Indices: 50246854--50246892 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
50246844 CTAAACCAAC
50246854 AATTTTTTAA
1 AATTTTTTAA
*
50246864 AATTTTTTTA
1 AATTTTTTAA
*
50246874 AATTTTAT-A
1 AATTTTTTAA
50246883 AATTTTTTAA
1 AATTTTTTAA
50246893 TTGTTTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 8 0.32
10 17 0.68
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:50246872 original size:11 final size:10
Alignment explanation
Indices: 50246854--50246902 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
50246844 CTAAACCAAC
*
50246854 AATTTTTTAA
1 AATTTTTTTA
50246864 AATTTTTTTA
1 AATTTTTTTA
*
50246874 AA-TTTTATA
1 AATTTTTTTA
50246883 AA-TTTTTT-
1 AATTTTTTTA
50246891 AATTGTTTTTA
1 AATT-TTTTTA
50246902 A
1 A
50246903 GTTTCGCTGC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
8 2 0.06
9 14 0.42
10 16 0.48
11 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (10 bp):
AATTTTTTTA
Found at i:50246879 original size:9 final size:9
Alignment explanation
Indices: 50246854--50246902 Score: 53
Period size: 9 Copynumber: 5.1 Consensus size: 9
50246844 CTAAACCAAC
50246854 AATTTTTTAA
1 AATTTTTT-A
50246864 AATTTTTTTA
1 AA-TTTTTTA
*
50246874 AATTTTATA
1 AATTTTTTA
50246883 AATTTTTTA
1 AATTTTTTA
*
50246892 ATTGTTTTTA
1 AAT-TTTTTA
50246902 A
1 A
50246903 GTTTCGCTGC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 16 0.47
10 12 0.35
11 6 0.18
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (9 bp):
AATTTTTTA
Found at i:50247210 original size:133 final size:133
Alignment explanation
Indices: 50247023--50247424 Score: 717
Period size: 134 Copynumber: 3.1 Consensus size: 133
50247013 TTATTTTTTA
* **
50247023 AAAATATTTTCCGATATTTTTTAATATTTAAGA-TTTTTTAAAACTTTCATTGATACGTAGCAGT
1 AAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTTAACTTTCATTGATACGTAGCAGT
50247087 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
66 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
50247152 ATG
131 ATG
50247155 AAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTTAACTTTCATTGATACGTAGCAGT
1 AAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTTAACTTTCATTGATACGTAGCAGT
50247220 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
66 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
50247285 ATG
131 ATG
50247288 AAAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTTAACTTTCATTGATACGTAGCAG
1 -AAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTTAACTTTCATTGATACGTAGCAG
50247353 TGTGTCATTGGAGGTTTTAATTTTAATTTTTAAT-----TCATATAGATGGGTAACGGGTATACA
65 TGTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAAT-ATATAGATGGGTAACGGGTATACA
50247413 AAATG
129 AAATG
50247418 AAAATAT
1 AAAATAT
50247425 AATCATCAAA
Statistics
Matches: 264, Mismatches: 3, Indels: 9
0.96 0.01 0.03
Matches are distributed among these distances:
129 8 0.03
130 29 0.11
132 32 0.12
133 97 0.37
134 98 0.37
ACGTcount: A:0.34, C:0.06, G:0.15, T:0.44
Consensus pattern (133 bp):
AAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTTAACTTTCATTGATACGTAGCAGT
GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
ATG
Found at i:50261650 original size:22 final size:22
Alignment explanation
Indices: 50261608--50261656 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
50261598 CTTTGCTTCG
* *
50261608 AGACATTGTCTCTAGGATCTCA
1 AGACATGGTCTCAAGGATCTCA
*
50261630 AGACATGGTCTCCAAGG-TCTCG
1 AGACATGGTCT-CAAGGATCTCA
50261652 AGACA
1 AGACA
50261657 AGATTTCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (22 bp):
AGACATGGTCTCAAGGATCTCA
Found at i:50262527 original size:74 final size:71
Alignment explanation
Indices: 50262449--50262606 Score: 176
Period size: 74 Copynumber: 2.2 Consensus size: 71
50262439 TAATTTAGAA
* * *
50262449 TTAGAATTTAAAATTTTAGGATTTAATATGTTTAATTAGATTTTAATTTAG-GTTAGATTCATTT
1 TTAGAATTTAAAATTTTAAGATTTAATAAGTTTAATTAGATTTTAACTTAGAGTTAGA--C--TT
*
50262513 TTTTTTAGTC
62 ATTTTTAGTC
** * *
50262523 TTAGAATATT-AAATTTTAAGATTTCTTAAGTTTCATTAGATTTTAACTTGGAGTTAGACTTATT
1 TTAGAAT-TTAAAATTTTAAGATTTAATAAGTTTAATTAGATTTTAACTTAGAGTTAGACTTATT
50262587 TTTAGTC
65 TTTAGTC
*
50262594 ATAGAATTTAAAA
1 TTAGAATTTAAAA
50262607 CTTAGAATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
70 2 0.03
71 20 0.28
73 1 0.01
74 41 0.57
75 8 0.11
ACGTcount: A:0.34, C:0.04, G:0.12, T:0.50
Consensus pattern (71 bp):
TTAGAATTTAAAATTTTAAGATTTAATAAGTTTAATTAGATTTTAACTTAGAGTTAGACTTATTT
TTAGTC
Found at i:50262932 original size:54 final size:54
Alignment explanation
Indices: 50262867--50262975 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
50262857 AGCTCACGAG
50262867 CTAAACCTTAGCTCAACTTCAGCTTAGGAGTTTAATCTCAGCT-AAGCTTTAGCT
1 CTAAACCTTAGCTCAACTTCAGCTTAGGAGTTTAATCTCAGCTCAA-CTTTAGCT
50262921 CTAAACCTTAGCTCAACTTCAGCTTAGGAGTTTAATCTCAGCTCAACTTTAGCT
1 CTAAACCTTAGCTCAACTTCAGCTTAGGAGTTTAATCTCAGCTCAACTTTAGCT
50262975 C
1 C
50262976 ACGAGCTAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
54 52 0.96
55 2 0.04
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (54 bp):
CTAAACCTTAGCTCAACTTCAGCTTAGGAGTTTAATCTCAGCTCAACTTTAGCT
Found at i:50262994 original size:30 final size:30
Alignment explanation
Indices: 50262921--50262995 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 30
50262911 AGCTTTAGCT
* *
50262921 CTAAACCTTAGCTCAACTTCAGCTTAGGAG
1 CTAAACCTTAGCTCAACTTCAGCTCACGAG
* * * * *
50262951 TTTAATCTCAGCTCAACTTTAGCTCACGAG
1 CTAAACCTTAGCTCAACTTCAGCTCACGAG
*
50262981 CTAAAGCTTAGCTCA
1 CTAAACCTTAGCTCA
50262996 TTTTAGTTTA
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
CTAAACCTTAGCTCAACTTCAGCTCACGAG
Found at i:50263496 original size:13 final size:13
Alignment explanation
Indices: 50263478--50263502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50263468 GTATTGATCA
50263478 TGTGTTCACACCT
1 TGTGTTCACACCT
50263491 TGTGTTCACACC
1 TGTGTTCACACC
50263503 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:50271958 original size:30 final size:30
Alignment explanation
Indices: 50271923--50271987 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
50271913 TGACTCAGTC
*
50271923 GTGTGAGCCACATGGCCTAGCAACACAGCT
1 GTGTGAGCCACATGACCTAGCAACACAGCT
50271953 GTGTGAGCCACATGACCTAGCAACACAGCT
1 GTGTGAGCCACATGACCTAGCAACACAGCT
50271983 GTGTG
1 GTGTG
50271988 TCATTTGAGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.18
Consensus pattern (30 bp):
GTGTGAGCCACATGACCTAGCAACACAGCT
Found at i:50273785 original size:105 final size:105
Alignment explanation
Indices: 50273595--50273787 Score: 226
Period size: 105 Copynumber: 1.8 Consensus size: 105
50273585 TGTCAGCTCG
* * * *
50273595 TGTGAAAACTTCACCTATACTGTTTTGAAACACATTCAGGGTACACGCCCGTGTGGGTTGCCTGT
1 TGTGAAAACTTCACCTATACTGTTTTGAAACACACTCAGGGCACACGCCCATGTGGGTTGCCAGT
* *** *
50273660 GCGTATCACATGGCCGTGTGACAATCTATGTCTTAGGCCA
66 GCGCATCACACAACCATGTGACAATCTATGTCTTAGGCCA
* * * * * *
50273700 TGTGAAAA-TTGCATCTATACTGTTTTGAAACACGCTCAGTGCACACGTCTATGTGTGTTGCCAG
1 TGTGAAAACTT-CACCTATACTGTTTTGAAACACACTCAGGGCACACGCCCATGTGGGTTGCCAG
*
50273764 TGTGCATCACACAACCATGTGACA
65 TGCGCATCACACAACCATGTGACA
50273788 GCCCGTGTCC
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
104 2 0.03
105 69 0.97
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (105 bp):
TGTGAAAACTTCACCTATACTGTTTTGAAACACACTCAGGGCACACGCCCATGTGGGTTGCCAGT
GCGCATCACACAACCATGTGACAATCTATGTCTTAGGCCA
Found at i:50274570 original size:39 final size:40
Alignment explanation
Indices: 50274508--50274617 Score: 172
Period size: 39 Copynumber: 2.8 Consensus size: 40
50274498 TTTGAGAAAC
*
50274508 TTTCAGTAGAA-CAAGTAGATATGGCTCGATAGAGCATA-T
1 TTTCAGTAGAATCAA-TAGGTATGGCTCGATAGAGCATACT
50274547 TTTCAGTAGAATCAATAGGTATGGCTCGATAGAGCATACT
1 TTTCAGTAGAATCAATAGGTATGGCTCGATAGAGCATACT
*
50274587 TTT-AGTAGAATCAGTAGGTATGGCTCGATAG
1 TTTCAGTAGAATCAATAGGTATGGCTCGATAG
50274618 TAGGTATCGT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
39 60 0.90
40 7 0.10
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (40 bp):
TTTCAGTAGAATCAATAGGTATGGCTCGATAGAGCATACT
Found at i:50280483 original size:91 final size:91
Alignment explanation
Indices: 50280332--50280505 Score: 242
Period size: 91 Copynumber: 1.9 Consensus size: 91
50280322 ACATTCACAT
* * * *
50280332 ATTATTTGGCAACTTTTATTTGCAAAAATGTTGTGTATTCACAATCATCTGGCAGCGTATTAACT
1 ATTATTTGGCAACTTTGATATGCAAAAATGTTGTGTATTCACAATCATCTAGCAGCGTATTAACC
50280397 TGCAACCTTTGGTGGTTTGCCCACCC
66 TGCAACCTTTGGTGGTTTGCCCACCC
** * *
50280423 ATTATTTGGCAACTTTGATATGCAATTATGTTGTGTATTCACAA-CTGTCTAGCAGTGTATTAAC
1 ATTATTTGGCAACTTTGATATGCAAAAATGTTGTGTATTCACAATC-ATCTAGCAGCGTATTAAC
* *
50280487 CTGCATCTTTTGGTGGTTT
65 CTGCAACCTTTGGTGGTTT
50280506 ATCCACAAAC
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
90 1 0.01
91 71 0.99
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (91 bp):
ATTATTTGGCAACTTTGATATGCAAAAATGTTGTGTATTCACAATCATCTAGCAGCGTATTAACC
TGCAACCTTTGGTGGTTTGCCCACCC
Found at i:50287224 original size:34 final size:34
Alignment explanation
Indices: 50287183--50287366 Score: 298
Period size: 34 Copynumber: 5.4 Consensus size: 34
50287173 TATTATACTT
* *
50287183 GGTGTGCTGGATGGACTGGCTCATACGAGCATAC
1 GGTGTGCTGGATGGATTGGCTCATACGAGCTTAC
50287217 GAG-GTGCTGGATGGATTGGCTCATACGAGCTTAC
1 G-GTGTGCTGGATGGATTGGCTCATACGAGCTTAC
*
50287251 AGTGTGCTGGATGGATTGGCTCATACGAGCTTAC
1 GGTGTGCTGGATGGATTGGCTCATACGAGCTTAC
50287285 GGTGTGCTGGATGGATTGGCTCATACGAGCTTAC
1 GGTGTGCTGGATGGATTGGCTCATACGAGCTTAC
* * *
50287319 TGTGTGCTGGATGGATTGGCTCATATGAGTTTAC
1 GGTGTGCTGGATGGATTGGCTCATACGAGCTTAC
50287353 GGTGTGCTGGATGG
1 GGTGTGCTGGATGG
50287367 CTAATGGCAT
Statistics
Matches: 140, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
33 1 0.01
34 138 0.99
35 1 0.01
ACGTcount: A:0.18, C:0.16, G:0.36, T:0.29
Consensus pattern (34 bp):
GGTGTGCTGGATGGATTGGCTCATACGAGCTTAC
Found at i:50288748 original size:46 final size:45
Alignment explanation
Indices: 50288695--50288912 Score: 143
Period size: 48 Copynumber: 4.6 Consensus size: 45
50288685 TATGTGTGCT
*
50288695 AGTGTAAGATATGTCTGGGACATGCATCAGCCACATATTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACATATTGAGAGCC
* * * * * ***
50288741 AGTGTAAGACATGTTTGGGATAAGCATTGGCCTCGATATATTCCAGCC
1 AGTGTAAGACATGTCTGGGACATGCA-TCGCCAC-ATAT-TGAGAGCC
* * * * *
50288789 AGTGTAAGACATGTCTAGGACATGCATCGGCATTCAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGCCA--CATATTGAGAGCC
* * ** *
50288835 AGTGTAAGACATGTTTGGGACATGCATCGGCCTTAAGATATACA-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GCC---ACATATTGAGAGCC
*
50288883 AGTGTAAGACCTGTCTGGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
50288913 ACATCGATGG
Statistics
Matches: 130, Mismatches: 31, Indels: 20
0.72 0.17 0.11
Matches are distributed among these distances:
46 55 0.42
47 10 0.08
48 57 0.44
49 7 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACATATTGAGAGCC
Found at i:50288867 original size:94 final size:93
Alignment explanation
Indices: 50288695--50289010 Score: 258
Period size: 94 Copynumber: 3.3 Consensus size: 93
50288685 TATGTGTGCT
* * *
50288695 AGTGTAAGATATGTCTGGGACATGCATCAGCCACATATTGAGAGCCAGTGTAAGACATGTTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACAGATCGAGAGCCAGTGTAAGACATGTTTGGG
* * * * * *
50288760 ATAAGCATTGGCCTCGATATATTCCAGCC
65 ACAAGCATCGGCCTCAAGATATACAAGCC
* * *
50288789 AGTGTAAGACATGTCTAGGACATGCATCGGCATTCAGA-CGAGAGCTAGTGTAAGACATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGCCA--CAGATCGAGAGCCAGTGTAAGACATGTTTGG
* * *
50288853 GACATGCATCGGCCTTAAGATATACAAGCT
64 GACAAGCATCGGCCTCAAGATATACAAGCC
* * * * * * *
50288883 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATGGAT-GAAAGCCAGCGTAAGACCTATC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGCCA-C-A--GATCGAGAGCCAGTGTAAGACATGTT
* * * * ** *
50288947 TGGGACGCAGCATCGGCTTCGATATATGGAAGTC
61 TGGGAC-AAGCATCGGCCTCAAGATATACAAGCC
*
50288981 AGTGTAAGACCTGTCTGGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
50289011 ACTTTGATGT
Statistics
Matches: 180, Mismatches: 34, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
93 3 0.02
94 94 0.52
95 12 0.07
97 24 0.13
98 47 0.26
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACAGATCGAGAGCCAGTGTAAGACATGTTTGGGA
CAAGCATCGGCCTCAAGATATACAAGCC
Found at i:50288902 original size:48 final size:47
Alignment explanation
Indices: 50288692--50288912 Score: 173
Period size: 46 Copynumber: 4.7 Consensus size: 47
50288682 TGATATGTGT
* * * **
50288692 GCTAGTGTAAGATATGTCTGGGACATGCATCAGCC--ACATATTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTAGATATACA-A
* * * * * * *
50288738 GCCAGTGTAAGACATGTTTGGGATAAGCATTGGCC-TCGATATATTCCA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTAGATATA--CAA
* * * ** *
50288786 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCATTCAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTT-AGATATACAA
*
50288832 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTT-AGATATACAA
*
50288880 GCTAGTGTAAGACCTGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCG
50288913 ACATCGATGG
Statistics
Matches: 135, Mismatches: 32, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
46 65 0.48
47 5 0.04
48 55 0.41
49 8 0.06
50 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTAGATATACAA
Found at i:50288940 original size:49 final size:49
Alignment explanation
Indices: 50288886--50289012 Score: 155
Period size: 49 Copynumber: 2.6 Consensus size: 49
50288876 ACAAGCTAGT
*
50288886 GTAAGACCTGTCTGGGACATGGCATCGACATCGATGGATGAAAGCCAGC
1 GTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGCCAGC
* *** * * * * * *
50288935 GTAAGACCTATCTGGGACGCAGCATCGGCTTCGATATATGGAAGTCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGCCAGC
50288984 GTAAGACCTGTCTGGGACATGGCATCGAC
1 GTAAGACCTGTCTGGGACATGGCATCGAC
50289013 TTTGATGTGT
Statistics
Matches: 62, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
49 62 1.00
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGCCAGC
Found at i:50291904 original size:42 final size:42
Alignment explanation
Indices: 50291857--50291991 Score: 123
Period size: 41 Copynumber: 3.2 Consensus size: 42
50291847 TTGGCAATAA
*
50291857 GCCTGCTAGACCTTTAAGTCTGATATCATTTATCGGCATTAC
1 GCCTGCTAGACCTTTAAGTCTGATATCATTTATCAGCATTAC
* ** * * * * *
50291899 GCCTGCTAG-GCTCGAAGCCCGATAAT-ATTCACCAGC-TTAAA
1 GCCTGCTAGACCTTTAAGTCTGAT-ATCATTTATCAGCATT-AC
* *
50291940 GCTTGCTAGACCTTTAAGTCTGATATCATTTCATTAGCATTAC
1 GCCTGCTAGACCTTTAAGTCTGATATCATTT-ATCAGCATTAC
50291983 GCCTGCTAG
1 GCCTGCTAG
50291992 GCTCAAAGCC
Statistics
Matches: 67, Mismatches: 20, Indels: 11
0.68 0.20 0.11
Matches are distributed among these distances:
40 2 0.03
41 27 0.40
42 23 0.34
43 13 0.19
44 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (42 bp):
GCCTGCTAGACCTTTAAGTCTGATATCATTTATCAGCATTAC
Found at i:50292031 original size:84 final size:83
Alignment explanation
Indices: 50291855--50292032 Score: 252
Period size: 84 Copynumber: 2.1 Consensus size: 83
50291845 CATTGGCAAT
* *
50291855 AAGCCTGCTAGACCTTTAAGTCTGATATCATTTATCGGCATTACGCCTGCTAGGCTCGAAGCCCG
1 AAGCCTGCTAGACCTTTAAGTCTGATATCATTTATCAGCATTACGCCTGCTAGGCTCAAAGCCCG
**
50291920 ATAATATTCACCAGCTTA
66 ATAATATTCACCAGCACA
* *
50291938 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCATTAGCATTACGCCTGCTAGGCTCAAAGCCC
1 AAGCCTGCTAGACCTTTAAGTCTGATATCATTT-ATCAGCATTACGCCTGCTAGGCTCAAAGCCC
50292003 GA-AAT-TCATCACCAGCACA
65 GATAATAT--TCACCAGCACA
*
50292022 AGGCCTGCTAG
1 AAGCCTGCTAG
50292033 GTTTGAACCC
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
82 1 0.01
83 35 0.42
84 48 0.57
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (83 bp):
AAGCCTGCTAGACCTTTAAGTCTGATATCATTTATCAGCATTACGCCTGCTAGGCTCAAAGCCCG
ATAATATTCACCAGCACA
Found at i:50293907 original size:14 final size:15
Alignment explanation
Indices: 50293878--50293907 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50293868 CAAAATTAAG
50293878 ACATGATACTTTCAC
1 ACATGATACTTTCAC
50293893 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
50293907 A
1 A
50293908 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:50298145 original size:24 final size:24
Alignment explanation
Indices: 50298113--50298161 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
50298103 CTTGAATTTG
50298113 GTCATTGTTGGGCCCACACGGCTT
1 GTCATTGTTGGGCCCACACGGCTT
*
50298137 GTCATTGTTGGGCCCACATGGCTT
1 GTCATTGTTGGGCCCACACGGCTT
50298161 G
1 G
50298162 GGACACGAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.27, G:0.31, T:0.31
Consensus pattern (24 bp):
GTCATTGTTGGGCCCACACGGCTT
Found at i:50302082 original size:46 final size:45
Alignment explanation
Indices: 50302032--50302205 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
50302022 TGGTTGAGCA
50302032 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
50302078 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
50302124 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
50302169 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50302206 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 1 0.01
45 32 0.30
46 66 0.61
47 1 0.01
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:50302197 original size:91 final size:92
Alignment explanation
Indices: 50302029--50302198 Score: 306
Period size: 91 Copynumber: 1.9 Consensus size: 92
50302019 GGATGGTTGA
* *
50302029 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50302094 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
50302121 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50302185 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
50302199 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
91 41 0.55
92 34 0.45
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:50305144 original size:15 final size:15
Alignment explanation
Indices: 50305105--50305184 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
50305095 GTATCTTGGG
*
50305105 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
50305120 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
50305135 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
50305150 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
50305165 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
50305179 TTTCTT
1 TTTCTT
50305185 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:50305174 original size:30 final size:30
Alignment explanation
Indices: 50305096--50305183 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
50305086 CATAGTATCG
* * *
50305096 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
50305126 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
50305156 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
50305184 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:50307439 original size:27 final size:26
Alignment explanation
Indices: 50307377--50307464 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 26
50307367 AGCATGGCTG
* *
50307377 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
50307403 CCATATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
50307431 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
50307458 CCAGAAC
1 CCAGAAC
50307465 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 4 0.07
27 35 0.64
28 16 0.29
ACGTcount: A:0.39, C:0.24, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:50307594 original size:26 final size:27
Alignment explanation
Indices: 50307565--50307640 Score: 100
Period size: 26 Copynumber: 2.8 Consensus size: 27
50307555 CAAAATTAAC
*
50307565 CCTAGGGGTATAACAGTAATTTTGC-A
1 CCTAGGGGTATAACAGTAATTTTCCAA
50307591 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAACAGTAATTTTCCA-A
* * *
50307619 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAACAGTAATTT
50307641 AGCTACTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 24 0.55
28 20 0.45
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATAACAGTAATTTTCCAA
Found at i:50309122 original size:26 final size:26
Alignment explanation
Indices: 50309084--50309141 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
50309074 CATGAAATTC
50309084 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
50309110 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
50309136 TTATCA
1 TTATCA
50309142 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:50309692 original size:68 final size:68
Alignment explanation
Indices: 50309607--50309763 Score: 176
Period size: 68 Copynumber: 2.3 Consensus size: 68
50309597 CTTAAAATTA
* * * *
50309607 AGCTGT-TCGAATGTGTTAGATTCACTATTCAAAGCA-TCATCATTTATGCTGTTTTATTTGGTA
1 AGCTGTCT-GAATGTGTTAGATTCACTATTCAAAGCACT-ACCATATATGCTATTTTATTTAGTA
50309670 AATGT
64 AATGT
* * * * *
50309675 AGCTGTCTGAATGTGTTAAATTCATTGTTCGATGCACTACCATATATGCTATTTTATTTAGTAAA
1 AGCTGTCTGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTATTTTATTTAGTAAA
50309740 TGT
66 TGT
* *
50309743 AGCTGTCCGAATCTGTT-GATT
1 AGCTGTCTGAATGTGTTAGATT
50309764 TCACAGTTAA
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
67 3 0.04
68 70 0.93
69 2 0.03
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (68 bp):
AGCTGTCTGAATGTGTTAGATTCACTATTCAAAGCACTACCATATATGCTATTTTATTTAGTAAA
TGT
Found at i:50325661 original size:21 final size:21
Alignment explanation
Indices: 50325599--50325664 Score: 123
Period size: 21 Copynumber: 3.1 Consensus size: 21
50325589 CATAGAAGCG
*
50325599 ATTCACCCTTTTGCCTGTTTG
1 ATTCACCCTTTTGCCTGTTTA
50325620 ATTCACCCTTTTGCCTGTTTA
1 ATTCACCCTTTTGCCTGTTTA
50325641 ATTCACCCTTTTGCCTGTTTA
1 ATTCACCCTTTTGCCTGTTTA
50325662 ATT
1 ATT
50325665 GATTTTTTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.14, C:0.27, G:0.11, T:0.48
Consensus pattern (21 bp):
ATTCACCCTTTTGCCTGTTTA
Found at i:50327625 original size:2 final size:2
Alignment explanation
Indices: 50327618--50327649 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
50327608 ATAAGAACGA
50327618 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
50327650 GGATTCGTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:50335844 original size:31 final size:31
Alignment explanation
Indices: 50335806--50335868 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
50335796 CCATCCTATG
50335806 TTCAAAAAAAAATAATTTAAATTAATAAGAT
1 TTCAAAAAAAAATAATTTAAATTAATAAGAT
* * *
50335837 TTCAAAAATAAATAGTTTAAATTAATCAGAT
1 TTCAAAAAAAAATAATTTAAATTAATAAGAT
50335868 T
1 T
50335869 AAAGAGAGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (31 bp):
TTCAAAAAAAAATAATTTAAATTAATAAGAT
Found at i:50337480 original size:21 final size:22
Alignment explanation
Indices: 50337432--50337481 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
50337422 ACAATGTAAA
50337432 AGCAAAATGACAACAAAACAAC
1 AGCAAAATGACAACAAAACAAC
* *
50337454 ATCAAAATGACAAC-AAACAAT
1 AGCAAAATGACAACAAAACAAC
50337475 AGCAAAA
1 AGCAAAA
50337482 CAATAGCAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.64, C:0.20, G:0.08, T:0.08
Consensus pattern (22 bp):
AGCAAAATGACAACAAAACAAC
Found at i:50350430 original size:42 final size:42
Alignment explanation
Indices: 50350371--50350454 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
50350361 TCCTACTGAA
50350371 AGTAAGAAAATTATTTCTAGTTCTATATTTGATTTGTAATTG
1 AGTAAGAAAATTATTTCTAGTTCTATATTTGATTTGTAATTG
50350413 AGTAAGAAAATTATTTCTAGTTCTATATTTGATTTGTAATTG
1 AGTAAGAAAATTATTTCTAGTTCTATATTTGATTTGTAATTG
50350455 TTCAAGCTCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.48
Consensus pattern (42 bp):
AGTAAGAAAATTATTTCTAGTTCTATATTTGATTTGTAATTG
Found at i:50352565 original size:40 final size:40
Alignment explanation
Indices: 50352510--50352589 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
50352500 GTTGTCATGA
50352510 TAGGATTAGATAATTGTTGTACTCTTTTTTCACTTTAATG
1 TAGGATTAGATAATTGTTGTACTCTTTTTTCACTTTAATG
50352550 TAGGATTAGATAATTGTTGTACTCTTTTTTCACTTTAATG
1 TAGGATTAGATAATTGTTGTACTCTTTTTTCACTTTAATG
50352590 ATTTTTCTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (40 bp):
TAGGATTAGATAATTGTTGTACTCTTTTTTCACTTTAATG
Found at i:50352827 original size:23 final size:22
Alignment explanation
Indices: 50352790--50352845 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
50352780 CACATTTATC
* *
50352790 TCTTTA-TTATTCTTTTTTTTT
1 TCTTTATTTATACTTTCTTTTT
*
50352811 TCTATTTTTTATACTTTCTTTTT
1 TCT-TTATTTATACTTTCTTTTT
50352834 TCTTTATTTATA
1 TCTTTATTTATA
50352846 ATAAAAATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 10 0.34
23 16 0.55
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (22 bp):
TCTTTATTTATACTTTCTTTTT
Found at i:50353048 original size:15 final size:15
Alignment explanation
Indices: 50353022--50353061 Score: 71
Period size: 15 Copynumber: 2.6 Consensus size: 15
50353012 AATTTCTTAT
50353022 GATTTCCCCAAAAATC
1 GATTT-CCCAAAAATC
50353038 GATTTCCCAAAAATC
1 GATTTCCCAAAAATC
50353053 GATTTCCCA
1 GATTTCCCA
50353062 TTTGTCATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.35, C:0.30, G:0.07, T:0.28
Consensus pattern (15 bp):
GATTTCCCAAAAATC
Found at i:50355105 original size:47 final size:47
Alignment explanation
Indices: 50355048--50355144 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
50355038 TTAAGTTAAT
*
50355048 TTAATGTCAAGGCAAGCTATGTAAATTTCACAGGGAATTACTAAGCA
1 TTAATGTCAAGGCAAGCTATGTAAATTTCACAGGGAATTACTAAGAA
*
50355095 TTAATGTCAAGGCAAGCTATGTAAATTTCATAGGGAATTACTAAGAA
1 TTAATGTCAAGGCAAGCTATGTAAATTTCACAGGGAATTACTAAGAA
50355142 TTA
1 TTA
50355145 GTAATACTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (47 bp):
TTAATGTCAAGGCAAGCTATGTAAATTTCACAGGGAATTACTAAGAA
Found at i:50361024 original size:46 final size:46
Alignment explanation
Indices: 50360974--50361069 Score: 120
Period size: 46 Copynumber: 2.1 Consensus size: 46
50360964 GCCATAGTGC
* * * * *
50360974 CTTTCAACTATGGTCTTACCCATTTCCTGTCATGTTGCCATGGTAT
1 CTTTCAACCATGGTCCTACCCATTTCATGCCACGTTGCCATGGTAT
***
50361020 CTTTCAACCATGGTCCTGTTCATTTCATGCCACGTTGCCATGGTAT
1 CTTTCAACCATGGTCCTACCCATTTCATGCCACGTTGCCATGGTAT
50361066 CTTT
1 CTTT
50361070 TGTAACATCC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.17, C:0.27, G:0.16, T:0.41
Consensus pattern (46 bp):
CTTTCAACCATGGTCCTACCCATTTCATGCCACGTTGCCATGGTAT
Found at i:50366528 original size:14 final size:15
Alignment explanation
Indices: 50366492--50366528 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
50366482 CAAACATTTG
50366492 TCAACATTAATTATT
1 TCAACATTAATTATT
*
50366507 T-AATATTAATTATT
1 TCAACATTAATTATT
50366521 TCAA-ATTA
1 TCAACATTA
50366529 CATTTTATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 17 0.85
15 3 0.15
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (15 bp):
TCAACATTAATTATT
Found at i:50366609 original size:61 final size:61
Alignment explanation
Indices: 50366543--50366730 Score: 181
Period size: 61 Copynumber: 3.1 Consensus size: 61
50366533 TTATAGTATC
50366543 ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * ** * *
50366604 ATATATTTTAATTATAATATATTTA-ATAATAATTATGTTAA--ATT-A-TCTTTTA-TAGTATC
1 ATATATTATGATTTTAATAAATTCATATAAGAA-TA--TTAATTATTAAGAATTTTATTA-AATT
* * *
50366663 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
50366724 ATATATT
1 ATATATT
50366731 TTAATTATAA
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
57 3 0.03
58 2 0.02
59 30 0.32
60 14 0.15
61 39 0.41
62 2 0.02
63 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:50366625 original size:16 final size:16
Alignment explanation
Indices: 50366604--50366649 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
50366594 TTATTAAATT
50366604 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
50366620 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
50366635 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
50366650 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:50366716 original size:120 final size:120
Alignment explanation
Indices: 50366499--50366767 Score: 454
Period size: 120 Copynumber: 2.2 Consensus size: 120
50366489 TTGTCAACAT
* *
50366499 TAAT-TATTTAATATTAATTAT-TTCAAATTACATTTTATAGTATCATATATTATGATTTTAATA
1 TAATATATTTAATAATAATTATGTT-AAATTACATTTTATAGTATCATATATTATGATTTGAATA
50366562 AATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
65 AATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
*
50366618 TAATATATTTAATAATAATTATGTTAAATTATC-TTTTATAGTATCATATATTATGATTTGAGTA
1 TAATATATTTAATAATAATTATGTTAAATTA-CATTTTATAGTATCATATATTATGATTTGAATA
*
50366682 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTA
65 AATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
50366738 TAATATATTTAATAATAATTATGTTTAAAT
1 TAATATATTTAATAATAATTATG-TTAAAT
50366768 ATGATTAAAT
Statistics
Matches: 142, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
119 4 0.03
120 129 0.91
121 9 0.06
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
TAATATATTTAATAATAATTATGTTAAATTACATTTTATAGTATCATATATTATGATTTGAATAA
ATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
Found at i:50366727 original size:59 final size:58
Alignment explanation
Indices: 50366544--50366727 Score: 139
Period size: 57 Copynumber: 3.1 Consensus size: 58
50366534 TATAGTATCA
*
50366544 TATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTAAATAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * *
50366603 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTA-TGTTAA-ATTATCTTT-TATAGTA
1 TATATTATGATTTAAATA-AAT-TCATATAAGAAT-ATTATTATTAAGA--AT-TTTAT-TA-AA
50366661 T
58 T
* *
50366662 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAATAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
50366723 TATAT
1 TATAT
50366728 ATTTTAATTA
Statistics
Matches: 95, Mismatches: 12, Indels: 36
0.66 0.08 0.25
Matches are distributed among these distances:
55 1 0.01
56 11 0.12
57 15 0.16
58 12 0.13
59 11 0.12
61 6 0.06
62 12 0.13
63 15 0.16
64 11 0.12
65 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (58 bp):
TATATTATGATTTAAATAAATTCATATAAGAATATTATTATTAAGAATTTTATTAAAT
Found at i:50366745 original size:16 final size:16
Alignment explanation
Indices: 50366724--50366765 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
50366714 TTATTAAATT
*
50366724 ATATATTTTAATTATA
1 ATATATTTTAATAATA
50366740 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
50366755 AT-TATGTTTAA
1 ATATAT-TTTAA
50366766 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Done.