Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 152 of 343
Found at i:50366750 original size:15 final size:15
Alignment explanation
Indices: 50366715--50366756 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
50366705 TTAAGAATTT
*
50366715 TATTAAATTAT-ATA
1 TATTTAATTATAATA
50366729 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
50366743 TATTTAATAATAAT
1 TATTTAATTATAAT
50366757 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:50366991 original size:45 final size:43
Alignment explanation
Indices: 50366891--50367000 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
50366881 TTTTCCATTA
50366891 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
50366930 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
50366975 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
50367001 CCTCTAATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:50367002 original size:16 final size:16
Alignment explanation
Indices: 50366981--50367048 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
50366971 GATTTGCTAT
*
50366981 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
50366997 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
50367013 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
50367029 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
50367045 TACA
1 TACA
50367049 GCAAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:50375601 original size:46 final size:45
Alignment explanation
Indices: 50375531--50375698 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 45
50375521 GGGCTATTAC
**
50375531 ATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGAT
1 ATCTTTCAACCATGGTCTTATTCATTTCATGTCATGTTGCCATG-T
* *
50375577 ATCTTTCAACCATGGTCTTGTTCATTTCATGTCACGTTGCCATCGT
1 ATCTTTCAACCATGGTCTTATTCATTTCATGTCATGTTGCCAT-GT
** *
50375623 ATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGT
1 ATCTTTCAACCATGGTCTTATTCATTTCATGTCATGTTGCCAT-GT
* **
50375669 ATCTTTCAACCATGGTTTTACACATTTCAT
1 ATCTTTCAACCATGGTCTTATTCATTTCAT
50375699 TTCAGAAAGC
Statistics
Matches: 110, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 109 0.99
47 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.41
Consensus pattern (45 bp):
ATCTTTCAACCATGGTCTTATTCATTTCATGTCATGTTGCCATGT
Found at i:50375695 original size:92 final size:92
Alignment explanation
Indices: 50375531--50375698 Score: 246
Period size: 92 Copynumber: 1.8 Consensus size: 92
50375521 GGGCTATTAC
** * *
50375531 ATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGATATCTTTCAACCATGGTCTT
1 ATCTTTCAACCATGGTCTTACACATTTCACATCATGTTGCCATGATATCTTTCAACCATGGTCTT
***
50375596 GTTCATTTCATGTCACGTTGCCATCGT
66 ACACATTTCATGTCACGTTGCCATCGT
* * *
50375623 ATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTTTT
1 ATCTTTCAACCATGGTCTTACACATTTCACATCATGTTGCCATGATATCTTTCAACCATGGTCTT
50375688 ACACATTTCAT
66 ACACATTTCAT
50375699 TTCAGAAAGC
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
92 66 1.00
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.41
Consensus pattern (92 bp):
ATCTTTCAACCATGGTCTTACACATTTCACATCATGTTGCCATGATATCTTTCAACCATGGTCTT
ACACATTTCATGTCACGTTGCCATCGT
Found at i:50378366 original size:24 final size:27
Alignment explanation
Indices: 50378333--50378384 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
50378323 CTTCTCCTTA
50378333 TGTTGTTGGTGCCA-ATT-TTGACTAT
1 TGTTGTTGGTGCCACATTCTTGACTAT
*
50378358 TGTT-TTGGTGCGACATTCTTGACTAT
1 TGTTGTTGGTGCCACATTCTTGACTAT
50378384 T
1 T
50378385 AGGGCCAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 8 0.33
25 7 0.29
26 9 0.38
ACGTcount: A:0.15, C:0.13, G:0.23, T:0.48
Consensus pattern (27 bp):
TGTTGTTGGTGCCACATTCTTGACTAT
Found at i:50383700 original size:946 final size:947
Alignment explanation
Indices: 50381863--50383757 Score: 3479
Period size: 946 Copynumber: 2.0 Consensus size: 947
50381853 AATCTAATAG
* *
50381863 ATATATTTATGAATCATGTCTTTTTTTTTAGAATATGAATTCTTCATTCAGACTGTCTATCTATT
1 ATATATTTATGAATCATGTCTCTCTTTTTAGAATATGAATTCTTCATTCAGACTGTCTATCTATT
50381928 TACCCGTGAATACAAAAAATTTATTTCCAAACTTGAGGGTAAAAATAAATGGATATAACTCAATT
66 TACCCGTGAATACAAAAAATTTATTTCCAAACTTGAGGGTAAAAATAAATGGATATAACTCAATT
*
50381993 TATTTTTCAACTGAATAACCCGTTTTGATTAAAACAGAGTCTATCTTAGCTGTCAAATAATAACA
131 TATTTTTCAACTGAATAACCCGTTCTGATTAAAACAGAGTCTATCTTAGCTGTCAAATAATAACA
50382058 TTTCAAAGTAACCACTTCATCTTGTTGTTAGGACAACTCAAACATACAATCTTTCATAATTCCTT
196 TTTCAAAGTAACCACTTCATCTTGTTGTTAGGACAACTCAAACATACAATCTTTCATAATTCCTT
**
50382123 CAACATGCTAGTCAAAGATCTTTACAAACTGTATGTAACGCCCTTAATTTGGGGCTAGAAGTATT
261 CAACATGCTAGTCAAAGATCTTTACAAACTGTATGTAACGCCCCGAATTTGGGGCTAGAAGTATT
* *
50382188 GGGCCTTTAGCATGGGTCTGTAAGGAGGTTGTATATAAGCATTTAATTGTACAACGAAATGACAC
326 GGGCCTTTAGCATGGGTCCGTAAGGAGGTTGTATATAAGCATTTAATTGTACAACGAAATGAAAC
*
50382253 AATTAAATGTCTGCTTTAGTGGTTAATGGCCTTGAGAACTGTTAGAGAAATCTTAGGTTCAAACC
391 AATTAAATGTCTGCTTTAGTGGTTAATGGCCCTGAGAACTGTTAGAGAAATCTTAGGTTCAAACC
50382318 TGGGCTTTAGCAAAAATTTTGGTAATAAGTGAATAAAACCCTGGGTGCTTGGATGAAGGCCTTTT
456 TGGGCTTTAGCAAAAATTTTGGTAATAAGTGAATAAAACCCTGGGTGCTTGGATGAAGGCCTTTT
50382383 AAATTATTGTGGTAAATAAATGACACAAGGAAGCTTGTGGTCTAGTGGTTGTGGTGTCATTAAAT
521 AAATTATTGTGGTAAATAAATGACACAAGGAAGCTTGTGGTCTAGTGGTTGTGGTGTCATTAAAT
* *
50382448 TTGCAAGGGAGCCTGGGTTCAAGTCTTGGCTCTTGCAATTTATTTTGGTTTTTCTTTTAAAGGAA
586 TTGAAAGGGAACCTGGGTTCAAGTCTTGGCTCTTGCAATTTATTTTGGTTTTTCTTTTAAAGGAA
50382513 CCTGGACTTTGGCCTATAGACCTTATATTTAATTGAGGATAAAATATGACATAGAAAGAGCCTGT
651 CCTGGACTTTGGCCTATAGACCTTATATTTAATTGAGGATAAAATATGACATAGAAAGAGCCTGT
* *
50382578 GGTGGAGTGGCAAGGTGGCGTGTTGTGTAACTGTGAAGTCTAAGGTTCAAGTATTGGGATGTACA
716 GGTGGAGTGGCAAGGTGGCGTGTTATGTAACTGTGAAGTCTAAGGTTCAAGTATTGGGATGCACA
*
50382643 ATGGAGTATTTATTTTGCTAATTTAGCTGTGTAGGAGGTAGAGTTGGACTGGAACTCTGTGGTTG
781 ATAGAGTATTTATTTTGCTAATTTAGCTGTGTAGGAGGTAGAGTTGGACTGGAACTCTGTGGTTG
* *
50382708 AGGTGGTAATAAGAAAATAAGGAATTTATCACCACTTTAGCGACTTTGGCGGCTTGGCTAGTTAC
846 AGGTGGTAATAAGAAAATAAGGAATTTATCACCACTTTAACGACTTTGGCGGCTTGGCCAGTTAC
*
50382773 TCGAGATTCGCGATTATTTCATTTCCTGATGCTAGCA
911 TCGAGATTCGCGATTATTTCATTTCCTGATGCTAACA
50382810 ATATATTTATGAATCATGTCTCTCTTTTTAGAATATGAATTCTTCATTCAGACTGTCTATCTATT
1 ATATATTTATGAATCATGTCTCTCTTTTTAGAATATGAATTCTTCATTCAGACTGTCTATCTATT
*
50382875 TACCCGTGAATACAAAAAATTTATTTCCAAACTTGAGGGTAAAATTAAATGGATATAACTCAATT
66 TACCCGTGAATACAAAAAATTTATTTCCAAACTTGAGGGTAAAAATAAATGGATATAACTCAATT
50382940 TATTTTTCAACTGAATAACCCGTTCTGATTAAAACAGAGTCTATCTTAGCTGTCAAATAATAACA
131 TATTTTTCAACTGAATAACCCGTTCTGATTAAAACAGAGTCTATCTTAGCTGTCAAATAATAACA
*
50383005 TTTCAAAGTAATCACTTCATCTTGTTGTTAGGACAACTCAAACATACAATCTTTCATAATTCCTT
196 TTTCAAAGTAACCACTTCATCTTGTTGTTAGGACAACTCAAACATACAATCTTTCATAATTCCTT
50383070 CAACATGCTAGTCAAAGATCTTTACAAAC-GTATGTAACGCCCCGAATTTGGGGCTAGAAGTATT
261 CAACATGCTAGTCAAAGATCTTTACAAACTGTATGTAACGCCCCGAATTTGGGGCTAGAAGTATT
* *
50383134 GGGCCTTTAGCATGGGTCCGTAAGGAGGTTGTATATAAGCATTTAATTGTACAAGGAAATTAAAC
326 GGGCCTTTAGCATGGGTCCGTAAGGAGGTTGTATATAAGCATTTAATTGTACAACGAAATGAAAC
* *
50383199 AATTAAATGTCTGCTTTAGTGGTTAATGGCCCTGAGAACTGTTGGAGAAATCTTGGGTTCAAACC
391 AATTAAATGTCTGCTTTAGTGGTTAATGGCCCTGAGAACTGTTAGAGAAATCTTAGGTTCAAACC
*
50383264 TGGGCTTTAGCAAAAATTTTGTTAATAAGTGAATAAAACCCTGGGTGCTTGGATGAAGGCCTTTT
456 TGGGCTTTAGCAAAAATTTTGGTAATAAGTGAATAAAACCCTGGGTGCTTGGATGAAGGCCTTTT
50383329 AAATTATTGTGGTAAATAAATGACACAAGGAAGCTTGTGGTCTAGTGGTTGTGGTGTCATTAAAT
521 AAATTATTGTGGTAAATAAATGACACAAGGAAGCTTGTGGTCTAGTGGTTGTGGTGTCATTAAAT
50383394 TTGAAAGGGAACCTGGGTTCAAGTCTTGGCTCTTGCAATTTATTTTGGTTTTTCTTTTAAAGGAA
586 TTGAAAGGGAACCTGGGTTCAAGTCTTGGCTCTTGCAATTTATTTTGGTTTTTCTTTTAAAGGAA
* *
50383459 CCTGGACTTTGGCCTATCGACCTTATATTTAATTGAGGATAAAATATGACATAGAAAGAGTCTGT
651 CCTGGACTTTGGCCTATAGACCTTATATTTAATTGAGGATAAAATATGACATAGAAAGAGCCTGT
* * *
50383524 GGTGGAGTGGCAAGGTGGCGTGTTATGTAACTGTGAGGTCTAAGGTTCAAGTTTTGGGATGCGCA
716 GGTGGAGTGGCAAGGTGGCGTGTTATGTAACTGTGAAGTCTAAGGTTCAAGTATTGGGATGCACA
* *
50383589 ATAGAGTATTTATTTTGCT-GTTTGAGCTGTGTAGGAGGTGGAGTTGGACTGGAACTCTGTGGTT
781 ATAGAGTATTTATTTTGCTAATTT-AGCTGTGTAGGAGGTAGAGTTGGACTGGAACTCTGTGGTT
*
50383653 GAGGTGGTAATAAGAAAATAAGGAATTTATGACCACTTTAACGACTTTGGCGGCTTGGCCAGTTA
845 GAGGTGGTAATAAGAAAATAAGGAATTTATCACCACTTTAACGACTTTGGCGGCTTGGCCAGTTA
*
50383718 CTTGAGATTCGCGATTATTTCATTTCCTGATGCTAACA
910 CTCGAGATTCGCGATTATTTCATTTCCTGATGCTAACA
50383756 AT
1 AT
50383758 TTACAGTGGT
Statistics
Matches: 915, Mismatches: 32, Indels: 3
0.96 0.03 0.00
Matches are distributed among these distances:
945 3 0.00
946 628 0.69
947 284 0.31
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (947 bp):
ATATATTTATGAATCATGTCTCTCTTTTTAGAATATGAATTCTTCATTCAGACTGTCTATCTATT
TACCCGTGAATACAAAAAATTTATTTCCAAACTTGAGGGTAAAAATAAATGGATATAACTCAATT
TATTTTTCAACTGAATAACCCGTTCTGATTAAAACAGAGTCTATCTTAGCTGTCAAATAATAACA
TTTCAAAGTAACCACTTCATCTTGTTGTTAGGACAACTCAAACATACAATCTTTCATAATTCCTT
CAACATGCTAGTCAAAGATCTTTACAAACTGTATGTAACGCCCCGAATTTGGGGCTAGAAGTATT
GGGCCTTTAGCATGGGTCCGTAAGGAGGTTGTATATAAGCATTTAATTGTACAACGAAATGAAAC
AATTAAATGTCTGCTTTAGTGGTTAATGGCCCTGAGAACTGTTAGAGAAATCTTAGGTTCAAACC
TGGGCTTTAGCAAAAATTTTGGTAATAAGTGAATAAAACCCTGGGTGCTTGGATGAAGGCCTTTT
AAATTATTGTGGTAAATAAATGACACAAGGAAGCTTGTGGTCTAGTGGTTGTGGTGTCATTAAAT
TTGAAAGGGAACCTGGGTTCAAGTCTTGGCTCTTGCAATTTATTTTGGTTTTTCTTTTAAAGGAA
CCTGGACTTTGGCCTATAGACCTTATATTTAATTGAGGATAAAATATGACATAGAAAGAGCCTGT
GGTGGAGTGGCAAGGTGGCGTGTTATGTAACTGTGAAGTCTAAGGTTCAAGTATTGGGATGCACA
ATAGAGTATTTATTTTGCTAATTTAGCTGTGTAGGAGGTAGAGTTGGACTGGAACTCTGTGGTTG
AGGTGGTAATAAGAAAATAAGGAATTTATCACCACTTTAACGACTTTGGCGGCTTGGCCAGTTAC
TCGAGATTCGCGATTATTTCATTTCCTGATGCTAACA
Found at i:50386550 original size:21 final size:21
Alignment explanation
Indices: 50386526--50386569 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
50386516 GAATCTTTAG
*
50386526 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
50386547 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
50386568 TA
1 TA
50386570 ATTAGGTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:50387377 original size:28 final size:28
Alignment explanation
Indices: 50387297--50387370 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
50387287 AGTAGTTGGT
* *
50387297 CCTGATAGGCCATATGAATGTGGTTAGG
1 CCTGATGGGCCATATGAATGTGATTAGG
50387325 CCTGATGGGCCATATGAATGTGATTAGG
1 CCTGATGGGCCATATGAATGTGATTAGG
*
50387353 CCTGATGGGCCATGTGAA
1 CCTGATGGGCCATATGAA
50387371 CGAGATTGGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.27
Consensus pattern (28 bp):
CCTGATGGGCCATATGAATGTGATTAGG
Found at i:50387382 original size:28 final size:28
Alignment explanation
Indices: 50387297--50387383 Score: 102
Period size: 28 Copynumber: 3.1 Consensus size: 28
50387287 AGTAGTTGGT
* * * *
50387297 CCTGATAGGCCATATGAATGTGGTTAGG
1 CCTGATGGGCCATATGAACGAGATTAGG
* *
50387325 CCTGATGGGCCATATGAATGTGATTAGG
1 CCTGATGGGCCATATGAACGAGATTAGG
* *
50387353 CCTGATGGGCCATGTGAACGAGATTGGG
1 CCTGATGGGCCATATGAACGAGATTAGG
50387381 CCT
1 CCT
50387384 AAAGGGGCCA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.26
Consensus pattern (28 bp):
CCTGATGGGCCATATGAACGAGATTAGG
Found at i:50387737 original size:27 final size:27
Alignment explanation
Indices: 50387699--50388144 Score: 488
Period size: 27 Copynumber: 16.6 Consensus size: 27
50387689 TAATAAAGAG
* *
50387699 AAATTACTGAAATA-CCTCTGATTTGTG
1 AAATTACCGAAATACCCTC-GATTTGTA
*
50387726 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
50387753 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* **
50387780 AAATTACCAAAACCCCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
50387807 AAATTACTAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
50387834 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
50387861 AAATTATCAAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
*
50387887 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
50387914 AAATTACTGAAATACCC-CTGATTTGTG
1 AAATTACCGAAATACCCTC-GATTTGTA
** * * * *
50387941 AAATTACTAAAACACCCTCAATTTTTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
50387968 AAATTACCGAAACACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
50387995 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
50388022 AAAATACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
50388049 AAATTACCGAAATACCATCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
50388076 AAATTATCGAAACACCCCCGATTTGT-
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
50388102 AAATTATCGAAATACCCT-TATAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
*
50388129 AAATTACTGAAATACC
1 AAATTACCGAAATACC
50388145 TTAGTAGTGT
Statistics
Matches: 364, Mismatches: 49, Indels: 12
0.86 0.12 0.03
Matches are distributed among these distances:
25 2 0.01
26 42 0.12
27 315 0.87
28 5 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:50388152 original size:27 final size:27
Alignment explanation
Indices: 50387968--50388186 Score: 96
Period size: 27 Copynumber: 8.1 Consensus size: 27
50387958 TCAATTTTTG
* * *
50387968 AAATTACCGAAACACCCTTGAT-TTGTA
1 AAATTATCGAAATACCCTT-ATAGTGTA
* * *
50387995 AAATTATCGAAACACCCTCGAT-TTGTA
1 AAATTATCGAAATACCCT-TATAGTGTA
* * *
50388022 AAAATA-CTGAAATACCCTCGAT-TTGTA
1 AAATTATC-GAAATACCCT-TATAGTGTA
* * * *
50388049 AAATTACCGAAATACCATCGAT-TTGTA
1 AAATTATCGAAATACCCT-TATAGTGTA
* ** *
50388076 AAATTATCGAAACACCCCCGAT-TTGT-
1 AAATTATCGAAATA-CCCTTATAGTGTA
50388102 AAATTATCGAAATACCCTTATAGTGTA
1 AAATTATCGAAATACCCTTATAGTGTA
50388129 AAATTA-CTGAAATA-CCTTAGTAGTGTA
1 AAATTATC-GAAATACCCTTA-TAGTGTA
*** * * *
50388156 AAATGGCCGACATACCCCTATAGGGTA
1 AAATTATCGAAATACCCTTATAGTGTA
50388183 AAAT
1 AAAT
50388187 GTCTGTTTTA
Statistics
Matches: 163, Mismatches: 19, Indels: 20
0.81 0.09 0.10
Matches are distributed among these distances:
25 5 0.03
26 23 0.14
27 127 0.78
28 8 0.05
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.29
Consensus pattern (27 bp):
AAATTATCGAAATACCCTTATAGTGTA
Found at i:50388184 original size:107 final size:108
Alignment explanation
Indices: 50387703--50388186 Score: 306
Period size: 107 Copynumber: 4.5 Consensus size: 108
50387693 AAAGAGAAAT
* * * * **
50387703 TACTGAAATACCTCT-GATTTGTGAAATTACCGAAACACC-CTCGATTTGTAAAATTACCGAAAC
1 TACTGAAATACC-CTAGATGTGTAAAATGACCGAAATACCAC-CGATGGGTAAAATTACCGAAAC
* * * * * *
50387766 ACCCTCGATTTGTAAAATTACCAAAACCCCCTCGATTTGTAAAAT
64 ACCCCCGATTTGTAAAATTATCGAAACACCCTCGATGTGTAAAAA
* * * * * * ** * * *
50387811 TACTAAAATACCCTTGATTTGTAAAATTACCAAAATACC-CTCAATTTGTAAAATTATCAAAATA
1 TACTGAAATACCCTAGATGTGTAAAATGACCGAAATACCAC-CGATGGGTAAAATTACCGAAACA
* * * * *
50387875 CCCTCGA-TTGTGAAATTA-CTGAAATACCCTCGATTTGTAAAAT
65 CCCCCGATTTGTAAAATTATC-GAAACACCCTCGATGTGTAAAAA
* * * ** * * *** *
50387918 TACTGAAATACCCCT-GATTTGTGAAATTACTAAAACACC-CTCAATTTTTGAAATTACCGAAAC
1 TACTGAAATA-CCCTAGATGTGTAAAATGACCGAAATACCAC-CGATGGGTAAAATTACCGAAAC
** *
50387981 ACCCTTGATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAAA
64 ACCCCCGATTTGTAAAATTATCGAAACACCCTCGATGTGTAAAAA
* * * * ** *
50388026 TACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCATCGATTTGTAAAATTATCGAAACAC
1 TACTGAAATACCCTAGATGTGTAAAATGACCGAAATACCACCGATGGGTAAAATTACCGAAACAC
* * *
50388091 CCCCGATTTGT-AAATTATCGAAATACCCT-TATAGTGTAAAAT
66 CCCCGATTTGTAAAATTATCGAAACACCCTCGAT-GTGTAAAAA
* * * *
50388133 TACTGAAATACCTTAG-TAGTGTAAAATGGCCGACATACC-CCTATAGGGTAAAAT
1 TACTGAAATACCCTAGAT-GTGTAAAATGACCGAAATACCACCGAT-GGGTAAAAT
50388187 GTCTGTTTTA
Statistics
Matches: 316, Mismatches: 50, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
106 7 0.02
107 154 0.49
108 154 0.49
109 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (108 bp):
TACTGAAATACCCTAGATGTGTAAAATGACCGAAATACCACCGATGGGTAAAATTACCGAAACAC
CCCCGATTTGTAAAATTATCGAAACACCCTCGATGTGTAAAAA
Found at i:50389752 original size:30 final size:29
Alignment explanation
Indices: 50389718--50389781 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
50389708 ATGAATCGGA
*
50389718 AGCTTTGGCACTAAGTGGGCGATTTAAACT
1 AGCTTTGGCACTAAGTGCGCGATTT-AACT
50389748 AGCTTTGGCACTAAGTGCGCGATTTAACT
1 AGCTTTGGCACTAAGTGCGCGATTTAACT
50389777 AGCTT
1 AGCTT
50389782 CGGTTACTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGCGCGATTTAACT
Found at i:50397160 original size:30 final size:29
Alignment explanation
Indices: 50397105--50397168 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 29
50397095 ATGAATCGAA
*
50397105 AGCTTTGGCACTAAGCTTTCAATTTAAACT
1 AGCTTTGGCACTAAGCTTGCAATTT-AACT
*
50397135 AGCTTTGGCACTAAG-TGTGCGATTTAACT
1 AGCTTTGGCACTAAGCT-TGCAATTTAACT
50397164 AGCTT
1 AGCTT
50397169 CGGTTACTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 10 0.32
30 21 0.68
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (29 bp):
AGCTTTGGCACTAAGCTTGCAATTTAACT
Found at i:50419349 original size:40 final size:39
Alignment explanation
Indices: 50419305--50419381 Score: 118
Period size: 39 Copynumber: 1.9 Consensus size: 39
50419295 AGTGGCCATA
* *
50419305 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGACTAAG-CCCGAAGGCAATTGTGCGAGTTACTAAT
*
50419345 TCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTA
1 TCCGGACTAAGCCCGAAGGCAATTGTGCGAGTTACTA
50419382 TAACCGGGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 24 0.71
40 10 0.29
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCAATTGTGCGAGTTACTAAT
Found at i:50419371 original size:39 final size:40
Alignment explanation
Indices: 50419266--50419405 Score: 135
Period size: 40 Copynumber: 3.5 Consensus size: 40
50419256 CGAATGATGT
* * ** * *
50419266 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGGCCATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTATAA
* * *
50419306 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCAATTGTGCGAGTTACTATA-A
50419346 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
*
50419385 CCGGGCTATGTCCCGAAGGCA
1 CCGGGCTAAGTCCCGAAGGCA
50419406 TTTGAACGAG
Statistics
Matches: 85, Mismatches: 9, Indels: 12
0.80 0.08 0.11
Matches are distributed among these distances:
39 34 0.40
40 43 0.51
41 8 0.09
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
Found at i:50419423 original size:40 final size:39
Alignment explanation
Indices: 50419318--50419416 Score: 101
Period size: 39 Copynumber: 2.5 Consensus size: 39
50419308 GGACTAAGAT
* ** *
50419318 CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAGC
1 CCGAAGGCAATTGAACGAGTTACTATA-ACCGGGCTAAGC
** *
50419357 CCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCAATTGAACGAGTTACTATAACCGGGCTAAG-C
*
50419397 CCGAAGGCATTTGAACGAGT
1 CCGAAGGCAATTGAACGAGT
50419417 AGCTATATCC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.63
40 19 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGAAGGCAATTGAACGAGTTACTATAACCGGGCTAAGC
Found at i:50427639 original size:47 final size:47
Alignment explanation
Indices: 50427570--50427838 Score: 187
Period size: 46 Copynumber: 5.7 Consensus size: 47
50427560 TATAATGCTA
* * * *
50427570 ATGCCATGTCGCAAACTTGGTCTTACACTGGCTCATCTATCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTATCAAGCCG
* * ** *
50427617 ATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCACATGTCCGTGCCT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT--C-TAT-CAAGCCG
* * * * ** *
50427667 ATGCCAAGTCCCAGACATGGTCTTACACTGACACAT-TTTGTAGCCT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTATCAAGCCG
* * *
50427713 ATG-CATGTCCC-GAACAT-GTCTTACACTGGCTTA-CATGTCGAGGCCG
1 ATGCCATGTCCCAG-ACATGGTCTTACACTGGCTCATC-TATC-AAGCCG
* *
50427759 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCATCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-TATCAA-GCCG
* *
50427805 ATGACATGTCCCAGACATGTTCTTACACTGGCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC
50427839 TCGTAATGTG
Statistics
Matches: 178, Mismatches: 30, Indels: 27
0.76 0.13 0.11
Matches are distributed among these distances:
44 14 0.08
45 14 0.08
46 51 0.29
47 47 0.26
48 14 0.08
49 2 0.01
50 35 0.20
51 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTATCAAGCCG
Found at i:50427829 original size:94 final size:91
Alignment explanation
Indices: 50427589--50427882 Score: 237
Period size: 94 Copynumber: 3.1 Consensus size: 91
50427579 CGCAAACTTG
* * *
50427589 GTCTTACACTGGCTCATC-TATCAA-GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCT
1 GTCTTACACTAGCTC-TCAT-TCAATGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT
* * *
50427652 CACATGTCCGTGCCTATGCCAAGTCCCAGACAT
62 -ACATGT-CGGGCCGATG-CATGTCCCAGACAT
* * *** *
50427685 GGTCTTACACT-G-ACACATTTTGTAGCCTATGCATGTCCC-GAACATGTCTTACACTGGCT-TA
1 -GTCTTACACTAGCTCTCATTCAAT-GCCGATGCATGTCCCAG-ACATGTCTTACACTGGCTCTA
50427746 CATGTCGAGGCCGATGCATGTCCCAGACAT
63 CATGTCG-GGCCGATGCATGTCCCAGACAT
50427776 GTCTTACACTAGCTCTCATCTCAATGCCGATGACATGTCCCAGACATGTTCTTACACTGGCTCT-
1 GTCTTACACTAGCTCTCAT-TCAATGCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTCTA
** *
50427840 CGTAATGT--GGTTGATGCATGTCCCAAACAT
63 C---ATGTCGGGCCGATGCATGTCCCAGACAT
50427870 GTCTTACACTAGC
1 GTCTTACACTAGC
50427883 ACACAATTAA
Statistics
Matches: 162, Mismatches: 20, Indels: 33
0.75 0.09 0.15
Matches are distributed among these distances:
90 10 0.06
91 16 0.10
92 22 0.14
93 16 0.10
94 63 0.39
95 15 0.09
96 6 0.04
97 14 0.09
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (91 bp):
GTCTTACACTAGCTCTCATTCAATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACAT
GTCGGGCCGATGCATGTCCCAGACAT
Found at i:50427860 original size:47 final size:48
Alignment explanation
Indices: 50427758--50427882 Score: 150
Period size: 47 Copynumber: 2.6 Consensus size: 48
50427748 TGTCGAGGCC
50427758 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCA-CTCAATGCCGAT
* * ** *
50427807 GA--CATGTCCCAGACATGTTCTTACACTGGCTCTC-GT-AATGTGGTT
1 GATGCATGTCCCAGACATG-TCTTACACTAGCTCTCACTCAATGCCGAT
*
50427852 GATGCATGTCCCAAACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
50427883 ACACAATTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
45 8 0.12
46 12 0.18
47 29 0.44
48 15 0.23
49 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCACTCAATGCCGAT
Found at i:50430130 original size:13 final size:13
Alignment explanation
Indices: 50430114--50430147 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
50430104 ATGAGACACG
*
50430114 GCCGTGTGTTTCA
1 GCCGTGTGTCTCA
50430127 GCCGTGTGTCTCA
1 GCCGTGTGTCTCA
50430140 GCCGTGTG
1 GCCGTGTG
50430148 AAGGACATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.26, G:0.35, T:0.32
Consensus pattern (13 bp):
GCCGTGTGTCTCA
Found at i:50438060 original size:29 final size:29
Alignment explanation
Indices: 50438024--50438203 Score: 172
Period size: 29 Copynumber: 6.3 Consensus size: 29
50438014 GTGAGCATGA
* *
50438024 ATAT-AATGTGATTTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * *
50438052 ATATAAATGAG-ATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
50438080 ATATGAATGTGAATTGGGCTTTATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * *
50438109 ATATGAACGTGAATTGGGCTTTATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
50438138 ATATGAACGTGAATTGGG-CAGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * *
50438166 ATCTAAATGAG-ATTGGGCCTAGA-GGGCC
1 ATATGAATGTGAATTGGGCCT-GATGGGCC
*
50438194 ATATGCATGT
1 ATATGAATGT
50438204 ATGTGGGGGG
Statistics
Matches: 127, Mismatches: 21, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
27 6 0.05
28 53 0.42
29 68 0.54
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:50438150 original size:58 final size:57
Alignment explanation
Indices: 50438045--50438198 Score: 197
Period size: 58 Copynumber: 2.7 Consensus size: 57
50438035 TTTGGGCCGG
*
50438045 ATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAATGTGAATTGGGCTTT
1 ATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAACGTGAATTGGGCTTT
* * * **
50438102 ATGGGCCATATGAACGTGA-ATTGGGCTTTATGGGCCATATGAACGTGAATTGGGC-AG
1 ATGGGCCATAT-AA-ATGAGATTGGGCCTAATGGGCCATATGAACGTGAATTGGGCTTT
*
50438159 ATGGGCCATCTAAATGAGATTGGGCCTAGA-GGGCCATATG
1 ATGGGCCATATAAATGAGATTGGGCCTA-ATGGGCCATATG
50438199 CATGTATGTG
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
55 3 0.04
56 20 0.24
57 22 0.27
58 35 0.42
59 3 0.04
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (57 bp):
ATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAACGTGAATTGGGCTTT
Found at i:50451176 original size:42 final size:43
Alignment explanation
Indices: 50451068--50451177 Score: 143
Period size: 43 Copynumber: 2.6 Consensus size: 43
50451058 TCGTACATTT
* *
50451068 CCAATGTCCTAGACGTGGTCTTACATGTAATCATATATCGATG
1 CCAATGTCCTAGACGTGGTCTTACATGAAATCAAATATCGATG
* *
50451111 CCATTGTCCTAGATAG-GGTCTTACATGAAATCAAATAT-GATG
1 CCAATGTCCTAGA-CGTGGTCTTACATGAAATCAAATATCGATG
* *
50451153 CCAATGTCCCAGACGTGGCCTTACA
1 CCAATGTCCTAGACGTGGTCTTACA
50451178 CGATAACACA
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
41 1 0.02
42 23 0.40
43 32 0.56
44 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (43 bp):
CCAATGTCCTAGACGTGGTCTTACATGAAATCAAATATCGATG
Found at i:50458766 original size:44 final size:42
Alignment explanation
Indices: 50458612--50458774 Score: 122
Period size: 44 Copynumber: 3.8 Consensus size: 42
50458602 ATCTTGTACA
**
50458612 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAAATC-AA-ATCG
* *
50458655 ATGCC-ACTGTCCCAGA--TAGGATCCT--ACATGAAATCAAATATG
1 ATGCCAAC-GTCCCAGACGT-GG-TCTTACACAT-AAATCAAAT-CG
* * **
50458697 ATGCAAACGTCCCAGACATTTTCTTACACATAAATCATAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAAATCA-AA-TCG
50458741 ATGCCAACGTCCCAGACGTGGTCTTACACGATAA
1 ATGCCAACGTCCCAGACGTGGTCTTACAC-ATAA
50458775 CACATATTAG
Statistics
Matches: 93, Mismatches: 13, Indels: 26
0.70 0.10 0.20
Matches are distributed among these distances:
41 5 0.05
42 22 0.24
43 28 0.30
44 33 0.35
45 5 0.05
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACATAAATCAAATCG
Found at i:50459429 original size:29 final size:29
Alignment explanation
Indices: 50459396--50459454 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
50459386 TCAAACTTCC
50459396 CAAAGCTCACATTATCAATAATGGCATAA
1 CAAAGCTCACATTATCAATAATGGCATAA
50459425 CAAAGCTCACATTATCAATAATGGCATAA
1 CAAAGCTCACATTATCAATAATGGCATAA
50459454 C
1 C
50459455 TCAAAATCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.44, C:0.22, G:0.10, T:0.24
Consensus pattern (29 bp):
CAAAGCTCACATTATCAATAATGGCATAA
Found at i:50460833 original size:13 final size:13
Alignment explanation
Indices: 50460815--50460849 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
50460805 ATGTTATAAT
50460815 AAAACATAATATA
1 AAAACATAATATA
50460828 AAAACATAATATA
1 AAAACATAATATA
*
50460841 AAAATATAA
1 AAAACATAA
50460850 GAAAAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAACATAATATA
Found at i:50461842 original size:43 final size:42
Alignment explanation
Indices: 50461683--50461839 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
50461673 TATGTATTCT
* * * * *
50461683 CATGTAAGACCACGTTTGGGATGTTCGCATCGATATGTGATTA
1 CATGTAAGACCATGTCTGGGACGTTGGCATCGTTATGTGA-TA
* * * * *
50461726 CGTGTAAGACCATGTCTAGGACATTGGCATCG-TATTTGATT
1 CATGTAAGACCATGTCTGGGACGTTGGCATCGTTATGTGATA
* * *
50461767 CATGTAAGACCCTATCTGGGACAG-TGGCATTGTTATGTGATA
1 CATGTAAGACCATGTCTGGGAC-GTTGGCATCGTTATGTGATA
50461809 GCATGTAAGACCATGTCTGGGACGTTGGCAT
1 -CATGTAAGACCATGTCTGGGACGTTGGCAT
50461840 TGTACGATAT
Statistics
Matches: 91, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 26 0.29
42 14 0.15
43 51 0.56
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
CATGTAAGACCATGTCTGGGACGTTGGCATCGTTATGTGATA
Found at i:50469506 original size:22 final size:22
Alignment explanation
Indices: 50469464--50469507 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
50469454 AATTATTTAC
* *
50469464 GACTAAAGTATAGCATTCATAT
1 GACTAAAGAATAGCATGCATAT
50469486 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCATGCATAT
50469508 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCATGCATAT
Found at i:50469808 original size:40 final size:40
Alignment explanation
Indices: 50469734--50469955 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
50469724 AACCCAAGTA
* *
50469734 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
** * *
50469773 CCTTCGGGTTTTAGCCCGGATATATTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
50469813 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
50469853 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* * *
50469893 CCTTCCGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
50469933 CCTTCGGGATTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
50469956 CATTCGAATA
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.08
40 150 0.90
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:50479830 original size:40 final size:40
Alignment explanation
Indices: 50479779--50479927 Score: 169
Period size: 40 Copynumber: 3.7 Consensus size: 40
50479769 CGGATGATAT
* * *
50479779 CCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGACTAAG-TCCCGAAGGCATTCGTGCTAGTTATTATAA
50479819 CCGGACTAAGAT-CCGAAGGCAATT-GTGCTAGTTATTATAA
1 CCGGACTAAG-TCCCGAAGGC-ATTCGTGCTAGTTATTATAA
** **
50479859 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
**
50479899 CCGGGTTAAGTCCCGAAGGCATTCGTGCT
1 CCGGACTAAGTCCCGAAGGCATTCGTGCT
50479928 GGTTGTTACA
Statistics
Matches: 99, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
39 4 0.04
40 92 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
Found at i:50487946 original size:40 final size:40
Alignment explanation
Indices: 50487895--50488043 Score: 169
Period size: 40 Copynumber: 3.7 Consensus size: 40
50487885 CGGATGATAT
* * *
50487895 CCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGACTAAG-TCCCGAAGGCATTCGTGCTAGTTATTATAA
50487935 CCGGACTAAGAT-CCGAAGGCAATT-GTGCTAGTTATTATAA
1 CCGGACTAAG-TCCCGAAGGC-ATTCGTGCTAGTTATTATAA
** **
50487975 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
**
50488015 CCGGGTTAAGTCCCGAAGGCATTCGTGCT
1 CCGGACTAAGTCCCGAAGGCATTCGTGCT
50488044 GGTTGTTACA
Statistics
Matches: 99, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
39 4 0.04
40 92 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
Found at i:50528927 original size:29 final size:29
Alignment explanation
Indices: 50528894--50528953 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
50528884 ATCAAACTTC
50528894 ACAAAGCTCACATTATCAATAATGGCATA
1 ACAAAGCTCACATTATCAATAATGGCATA
50528923 ACAAAGCTCACATTATCAATAATGGCATA
1 ACAAAGCTCACATTATCAATAATGGCATA
50528952 AC
1 AC
50528954 TCAAAATCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.45, C:0.22, G:0.10, T:0.23
Consensus pattern (29 bp):
ACAAAGCTCACATTATCAATAATGGCATA
Found at i:50530329 original size:13 final size:13
Alignment explanation
Indices: 50530311--50530345 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
50530301 ATGTTATAAT
50530311 AAAACATAATATA
1 AAAACATAATATA
50530324 AAAACATAATATA
1 AAAACATAATATA
*
50530337 AAAATATAA
1 AAAACATAA
50530346 GAAAAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAACATAATATA
Found at i:50531249 original size:43 final size:43
Alignment explanation
Indices: 50531176--50531329 Score: 152
Period size: 43 Copynumber: 3.6 Consensus size: 43
50531166 TATTTATTCT
* * ** *
50531176 CATGTAAGACCACGTTTGGGATGTTCGCATCGATATGTGATTA
1 CATGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTA
* * * *
50531219 CGTGTAAGAACATGTCTAGGACATTGGCATCG-TATTTGATT-
1 CATGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTA
* * * *
50531260 CATGTAAGACCCTATCTGGGACAGTGGCATTGATATGTGA-TA
1 CATGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTA
*
50531302 GCATGTAAGACCATGTCTGGGACGTTGG
1 -CATGTAAGACCATGTCTGGGACATTGG
50531330 AATTGTACGA
Statistics
Matches: 87, Mismatches: 21, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
41 26 0.30
42 14 0.16
43 47 0.54
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTA
Found at i:50551991 original size:30 final size:30
Alignment explanation
Indices: 50551927--50551984 Score: 73
Period size: 32 Copynumber: 1.9 Consensus size: 30
50551917 TGAGTAATTA
*
50551927 GGACTAAATTGAAAAAAATGATAATTTGAG
1 GGACTAAATTGAAAAAAATGATAATGTGAG
*
50551957 GGACTAAAATATGAAATAAATGA-AATGT
1 GGACT-AAAT-TGAAAAAAATGATAATGT
50551985 ATGGACTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.21
31 8 0.33
32 11 0.46
ACGTcount: A:0.52, C:0.03, G:0.19, T:0.26
Consensus pattern (30 bp):
GGACTAAATTGAAAAAAATGATAATGTGAG
Found at i:50565719 original size:597 final size:597
Alignment explanation
Indices: 50564541--50566314 Score: 3120
Period size: 597 Copynumber: 3.0 Consensus size: 597
50564531 GCACGCCCTC
* *
50564541 CAAAGGATGCCAAATATTAGCCATAGTATTCCTAATTGCTAGAAAATTCACCACACTTGCAGTAA
1 CAAAGGATGCCAAATATTAGCCATAGTATTCCTCATTGCTGGAAAATTCACCACACTTGCAGTAA
50564606 GAAAACAACCCACCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACCGGTATAGAG
66 GAAAACAACCCACCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACCGGTATAGAG
* * *
50564671 AACGCCGTTTCTTCGCCATCATCTAAACTTAGTCCCGCCAAATCTTGCTCTATCTTCTTACGCAA
131 AACGCCTTTTCTTCGCCATCATCTAAACTTAGTTCCGCCAAATCTTGCTCCATCTTCTTACGCAA
* *
50564736 GAAAACAAATGACCGAACTCAATCAAGGAAACACGAACAGCACAGAACTATAGGGAGTATGAAAG
196 GAAAACAAATGACCGAACTCAATCAAGGAAACACGAACAGCACAGAACTATAGGGAGCAAGAAAG
* *
50564801 CAAGTAAAATAGGAGAAATCTAAAGAGAAAACAAAACCATAGCGTGTCATAGAAGACAGACAAAA
261 CAAGTAAAACAGGAGAAATCTAAAGAGAAAACAAAACCACAGCGTGTCATAGAAGACAGACAAAA
*
50564866 ACGTGCCACACGGCACACTTCTTATTTGTTTTTCTAATAATAATCATAAATAATTAATTCCATTT
326 ACGTGCCACACGGCAGACTTCTTATTTGTTTTTCTAATAATAATCATAAATAATTAATTCCATTT
* *
50564931 CAAATTTGTGGTCTCAAAATCACTGTTCTGACTATACCCTAATTCAAGATATTACACTCATTTGA
391 CAAATTTGTGGTCTCAAAATCACTGTTCTGACTAGACCCTAATTCAAGATATTACACTCATTTGC
*
50564996 ACATACACACCGACAATCTTAATGGCTTATTTAGGCAACCAAAGCATCTACAAACAAGGCCAAAT
456 ACATACACACCGACAATCTTAATGGCTTATTTAGGCAACCAAAACATCTACAAACAAGGCCAAAT
50565061 CATGTCATTCCATTATCCACACTCAACGTATTTGCAAAATTATATTTTTCCAAACCAAATATTAG
521 CATGTCATTCCATTATCCACACTCAACGTATTTGCAAAATTATATTTTTCCAAACCAAATATTAG
50565126 CCATAGTATTCTT
586 CCATAGTATTC-T
* *
50565139 CAAAGGAGGCCAAATATTAGCCATAGTATTCCTCATTGTTGGAAAATTCACCACACTTGCAGTAA
1 CAAAGGATGCCAAATATTAGCCATAGTATTCCTCATTGCTGGAAAATTCACCACACTTGCAGTAA
** *
50565204 GAAAACAACATAGCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACCGGTATAGAG
66 GAAAACAACCCACCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACCGGTATAGAG
*
50565269 AACGCCTTTTCTTCGCCATCATCTAAACTTAGTTCCGCCAAATCTTACTCCATCTTCTTACGCAA
131 AACGCCTTTTCTTCGCCATCATCTAAACTTAGTTCCGCCAAATCTTGCTCCATCTTCTTACGCAA
* *
50565334 GAAAACAAATGACCAAACTCAATCAAGGAAACACGAACAGCACAGAGCTATAGGGAGCAAGAAAG
196 GAAAACAAATGACCGAACTCAATCAAGGAAACACGAACAGCACAGAACTATAGGGAGCAAGAAAG
*
50565399 CAAGTAAAACAGGAGAAATCTAAAGAGAAAA-AAAACCACAGCGTGTCATAGAAGACAGAAAAAA
261 CAAGTAAAACAGGAGAAATCTAAAGAGAAAACAAAACCACAGCGTGTCATAGAAGACAGACAAAA
* * * * *
50565463 ACGTTCCACACGGTAGACTTCTTATTTATTTTTCTAATAATAATCATAATTAATTAACTCCATTT
326 ACGTGCCACACGGCAGACTTCTTATTTGTTTTTCTAATAATAATCATAAATAATTAATTCCATTT
* * * *
50565528 CAAATTTGTGGTTTCAAAATTACTGTTCCGACTAGACCTTAATTCAAGATATTACACTCATTTGC
391 CAAATTTGTGGTCTCAAAATCACTGTTCTGACTAGACCCTAATTCAAGATATTACACTCATTTGC
50565593 ACATACACACCGACAATCTTAATGGCTTATTTAGGCAACCAAAACATCTACAAACAAGGCCAAAT
456 ACATACACACCGACAATCTTAATGGCTTATTTAGGCAACCAAAACATCTACAAACAAGGCCAAAT
*
50565658 CATGTCATTCCATCATCCACACTCAACGTATTTGCAAAATTATATTTTTCCAAACCAAATATTAG
521 CATGTCATTCCATTATCCACACTCAACGTATTTGCAAAATTATATTTTTCCAAACCAAATATTAG
50565723 CCATAGTATTCT
586 CCATAGTATTCT
50565735 CTAAAGGATGCCAAATATTAGCCATAGTATTCCTCATTGCTGGAAAATTCACCACACTTGCAGTA
1 C-AAAGGATGCCAAATATTAGCCATAGTATTCCTCATTGCTGGAAAATTCACCACACTTGCAGTA
50565800 AGAAAACAACCCACCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACCGGTATAGA
65 AGAAAACAACCCACCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACCGGTATAGA
* * *
50565865 GAACGCCTCTTCTTCGCCATCATCTAAACTTAGTTACGCCAAATCTTGCTCCATCTTCTTATGCA
130 GAACGCCTTTTCTTCGCCATCATCTAAACTTAGTTCCGCCAAATCTTGCTCCATCTTCTTACGCA
50565930 AGAAAACAAATGACCGAACTCAATCAAGGAAACACGAACAGCACAGAACTATAGGGAGCAAGAAA
195 AGAAAACAAATGACCGAACTCAATCAAGGAAACACGAACAGCACAGAACTATAGGGAGCAAGAAA
*
50565995 GTAAGTAAAACAGGAGAAATCTAAAGAGAAAACAAAACCACAGCGTGTCATAGAAGACAGACAAA
260 GCAAGTAAAACAGGAGAAATCTAAAGAGAAAACAAAACCACAGCGTGTCATAGAAGACAGACAAA
*
50566060 AACGTGCCACACGGCAGACTTCTTATTTGTTTTTCTAATAATAATCATAAATAATTAATTCTATT
325 AACGTGCCACACGGCAGACTTCTTATTTGTTTTTCTAATAATAATCATAAATAATTAATTCCATT
**
50566125 TCAAATTTGTGGTCTCAAAATCACTGTTCTGACTAGACCCTAATTCGGGATATTACACTCATTTG
390 TCAAATTTGTGGTCTCAAAATCACTGTTCTGACTAGACCCTAATTCAAGATATTACACTCATTTG
* * *
50566190 CACATACACACCGACAATCTTAATGGCATATTTAGGCAACCAAAA-ATCTACAATCATGGCCAAA
455 CACATACACACCGACAATCTTAATGGCTTATTTAGGCAACCAAAACATCTACAAACAAGGCCAAA
* *
50566254 TCATGTCATTCCATTATCCACACTCAACATATTTGCAAAATTATATTTTTCAAAACCAAAT
520 TCATGTCATTCCATTATCCACACTCAACGTATTTGCAAAATTATATTTTTCCAAACCAAAT
50566315 CATACCAAAC
Statistics
Matches: 1111, Mismatches: 63, Indels: 5
0.94 0.05 0.00
Matches are distributed among these distances:
596 2 0.00
597 641 0.58
598 468 0.42
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (597 bp):
CAAAGGATGCCAAATATTAGCCATAGTATTCCTCATTGCTGGAAAATTCACCACACTTGCAGTAA
GAAAACAACCCACCAAGCAAAAACTATACATGGCATTTTGTTCTCCCACATCCACCGGTATAGAG
AACGCCTTTTCTTCGCCATCATCTAAACTTAGTTCCGCCAAATCTTGCTCCATCTTCTTACGCAA
GAAAACAAATGACCGAACTCAATCAAGGAAACACGAACAGCACAGAACTATAGGGAGCAAGAAAG
CAAGTAAAACAGGAGAAATCTAAAGAGAAAACAAAACCACAGCGTGTCATAGAAGACAGACAAAA
ACGTGCCACACGGCAGACTTCTTATTTGTTTTTCTAATAATAATCATAAATAATTAATTCCATTT
CAAATTTGTGGTCTCAAAATCACTGTTCTGACTAGACCCTAATTCAAGATATTACACTCATTTGC
ACATACACACCGACAATCTTAATGGCTTATTTAGGCAACCAAAACATCTACAAACAAGGCCAAAT
CATGTCATTCCATTATCCACACTCAACGTATTTGCAAAATTATATTTTTCCAAACCAAATATTAG
CCATAGTATTCT
Found at i:50588567 original size:28 final size:29
Alignment explanation
Indices: 50588527--50588612 Score: 108
Period size: 29 Copynumber: 3.0 Consensus size: 29
50588517 CAAGTCCACA
50588527 TACATGCT-TATGGCCCACTAGGCCCAATC
1 TACAT-CTATATGGCCCACTAGGCCCAATC
*
50588556 T-CAT-TCATATGGCCCATTAGGCCCAAAT-
1 TACATCT-ATATGGCCCACTAGGCCC-AATC
50588584 TACATCTATATGGCCCACTAGGCCCAATC
1 TACATCTATATGGCCCACTAGGCCCAATC
50588613 ACTTTTACAA
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
26 1 0.02
28 23 0.47
29 24 0.49
30 1 0.02
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.26
Consensus pattern (29 bp):
TACATCTATATGGCCCACTAGGCCCAATC
Found at i:50588858 original size:16 final size:16
Alignment explanation
Indices: 50588837--50588874 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
50588827 CAAACTTTTG
50588837 GCTTTTTGGCATTTCA
1 GCTTTTTGGCATTTCA
*
50588853 GCTTTTTGGCATTTCG
1 GCTTTTTGGCATTTCA
50588869 GCTTTT
1 GCTTTT
50588875 ACCGATCTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.08, C:0.18, G:0.21, T:0.53
Consensus pattern (16 bp):
GCTTTTTGGCATTTCA
Found at i:50601791 original size:47 final size:47
Alignment explanation
Indices: 50601671--50601792 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
50601661 GCATTGGCAC
* * *
50601671 TAAGACAAGGGTACAATGTAAGACCAGGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
50601718 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGTCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
50601765 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
50601793 CCAAGGCATG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:50601900 original size:55 final size:54
Alignment explanation
Indices: 50601771--50602075 Score: 334
Period size: 55 Copynumber: 5.6 Consensus size: 54
50601761 TTGGTAAGAT
* * * * *
50601771 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
50601825 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGG-C
* * * *
50601881 AAGG-TGCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
50601933 AAGGATATCATGTAAGACCATGTCATGACATGGGATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
50601988 AA--ATGTCTCATGTAAGACCAT-TCTAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGAT-AC-CATGTAAGACCATGTC-AAGACATGGCATTGATGAGTTCTATAAGGC
*
50602041 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
50602076 ATGGTAAGTT
Statistics
Matches: 209, Mismatches: 31, Indels: 23
0.79 0.12 0.09
Matches are distributed among these distances:
52 4 0.02
53 72 0.34
54 48 0.23
55 81 0.39
56 4 0.02
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:50602073 original size:108 final size:109
Alignment explanation
Indices: 50601778--50602075 Score: 456
Period size: 108 Copynumber: 2.7 Consensus size: 109
50601768 GATAAGGATA
* * * *
50601778 TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGCAAGGAAATCATGTAAGAC
1 TCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGCAAGGATATCATGTAAGAC
*
50601843 CATGTCAAGACATGACATTGATGAGTTACTATAAGGAAAAGGTGC
65 CATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTGC
50601888 -CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATATCATGTAAGACC
1 TCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATATCATGTAAGACC
* * * *
50601952 ATGTCATGACATGGGATTGATGAGTTACTATAAGGCAAATGT-C
66 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTGC
* * * *
50601995 TCATGTAAGACCATTCTAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACC
1 TCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATATCATGTAAGACC
50602060 ATGTCAAGACATGGCA
66 ATGTCAAGACATGGCA
50602076 ATGGTAAGTT
Statistics
Matches: 172, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
107 1 0.01
108 138 0.80
109 33 0.19
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (109 bp):
TCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATATCATGTAAGACC
ATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTGC
Found at i:50607243 original size:28 final size:28
Alignment explanation
Indices: 50607203--50607281 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
50607193 GCAATCAAAT
* * *
50607203 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
50607231 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
50607259 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
50607282 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:50608848 original size:39 final size:40
Alignment explanation
Indices: 50608723--50608907 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
50608713 GCTACTCGTT
*
50608723 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
50608763 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
50608803 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *** * *
50608842 CAAATGCCTTC-GGATCTTAGTCCGGATACGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
50608883 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50608908 CATCATTCGA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 76 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:50616938 original size:79 final size:80
Alignment explanation
Indices: 50616839--50617059 Score: 202
Period size: 80 Copynumber: 2.8 Consensus size: 80
50616829 CTCGTTCAAG
* * ** * *
50616839 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
50616902 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
50616918 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
50616983 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
50616998 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
50617060 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 37 0.31
80 74 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:50616990 original size:80 final size:80
Alignment explanation
Indices: 50616879--50617059 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
50616869 CTCATTCAAT
* * *
50616879 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
50616942 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
50616958 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
50617022 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
50617039 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
50617060 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:50617019 original size:40 final size:40
Alignment explanation
Indices: 50616876--50617059 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
50616866 TAACTCATTC
* *
50616876 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
50616916 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
50616956 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
50616996 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
50617037 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50617060 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:50624338 original size:34 final size:33
Alignment explanation
Indices: 50624282--50624353 Score: 99
Period size: 34 Copynumber: 2.2 Consensus size: 33
50624272 TATACATCTT
* *
50624282 TGATACTATACTGAAGTGGGCTAAGGCCCACAC
1 TGATACTATACTGAAGTAGGCTAAAGCCCACAC
* *
50624315 TGATACTATTACTGCATTAGGCTAAAGCCCACAC
1 TGATACTA-TACTGAAGTAGGCTAAAGCCCACAC
50624349 TGATA
1 TGATA
50624354 TTGCGATCGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 8 0.24
34 26 0.76
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (33 bp):
TGATACTATACTGAAGTAGGCTAAAGCCCACAC
Found at i:50627918 original size:46 final size:46
Alignment explanation
Indices: 50627868--50628043 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
50627858 TGGTTGAGCA
50627868 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
50627914 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
50627961 TCCGAGA-TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
50628007 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50628044 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 3 0.03
46 65 0.60
47 31 0.29
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50628024 original size:93 final size:93
Alignment explanation
Indices: 50627865--50628035 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
50627855 GGATGGTTGA
*
50627865 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
50627930 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
50627958 GCATCCGAGA-TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG-CCTGAGCTCGTTGA
1 GCATCCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC-GAACTCGTTGA
50628021 GTTGAGTCCGAGTTC
64 GTTGAGTCCGAGTTC
50628036 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 2, Indels: 4
0.93 0.03 0.05
Matches are distributed among these distances:
92 2 0.03
93 71 0.96
94 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:50631013 original size:15 final size:15
Alignment explanation
Indices: 50630993--50631048 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
50630983 GTATCTTGGG
50630993 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
50631008 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
50631023 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
50631038 TTTCTTTATTC
1 TTTCTTTATTC
50631049 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:50633489 original size:46 final size:45
Alignment explanation
Indices: 50633439--50633614 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
50633429 TGGTTGAGCA
50633439 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
50633485 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
50633532 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
50633578 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50633615 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:50633595 original size:93 final size:93
Alignment explanation
Indices: 50633436--50633606 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
50633426 GGATGGTTGA
* *
50633436 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50633501 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
50633529 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50633594 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
50633607 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:50637988 original size:40 final size:40
Alignment explanation
Indices: 50637942--50638166 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 40
50637932 CTTGCGCAAG
* * * *
50637942 GCCTTCGGGTCTTAGCCAGGATGTCGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
50637982 GCCTTCGGGACTTAGCTCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
50638022 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
50638062 GCCTTCGGGTCTTAGCCCGGATATAGTAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
50638102 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
50638143 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
50638167 CATTCGAATA
Statistics
Matches: 156, Mismatches: 28, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 128 0.82
41 28 0.18
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:50650669 original size:55 final size:55
Alignment explanation
Indices: 50650604--50650728 Score: 162
Period size: 55 Copynumber: 2.3 Consensus size: 55
50650594 TGCAATATAG
* ** *
50650604 CCGTGATCGAGCCTGCCAAAACAACACGGGTGTAT-GACACGCCCGTGCGGAAGAA
1 CCGTGGTCGAGCCTGCCAAAACAACACGGGCAT-TCGACACGCCCGTGCGGAACAA
* * *
50650659 CCGTGGTCGAGCCTGCCAAAACAACACGGGCATTCGACACGCTCGTGTGGAACAC
1 CCGTGGTCGAGCCTGCCAAAACAACACGGGCATTCGACACGCCCGTGCGGAACAA
*
50650714 CCGTGGTCGAACCTG
1 CCGTGGTCGAGCCTG
50650729 TTAAATTAAC
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 1 0.02
55 60 0.98
ACGTcount: A:0.26, C:0.31, G:0.29, T:0.14
Consensus pattern (55 bp):
CCGTGGTCGAGCCTGCCAAAACAACACGGGCATTCGACACGCCCGTGCGGAACAA
Found at i:50671012 original size:19 final size:19
Alignment explanation
Indices: 50670988--50671030 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
50670978 GCCATACAGG
* *
50670988 CGTGTGGGCCCATATGGGT
1 CGTGTGGGCCCACATGGGC
50671007 CGTGTGGGCCCACATGGGC
1 CGTGTGGGCCCACATGGGC
50671026 CGTGT
1 CGTGT
50671031 TATTGGCCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.09, C:0.26, G:0.42, T:0.23
Consensus pattern (19 bp):
CGTGTGGGCCCACATGGGC
Found at i:50671409 original size:17 final size:18
Alignment explanation
Indices: 50671387--50671420 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50671377 CACATTGAAG
50671387 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
50671404 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
50671421 CTTCCTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:50674585 original size:9 final size:9
Alignment explanation
Indices: 50674571--50674595 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
50674561 ATTCTATAAG
50674571 TTAAATGCA
1 TTAAATGCA
50674580 TTAAATGCA
1 TTAAATGCA
50674589 TTAAATG
1 TTAAATG
50674596 ACTATAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (9 bp):
TTAAATGCA
Found at i:50683797 original size:40 final size:40
Alignment explanation
Indices: 50683748--50683842 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
50683738 ATCTCGGTAT
50683748 CGCACACTTAGTGCC-TCATATAGCCGAAGCTA-TTCGAAC
1 CGCACACTTAGTGCCAT-ATATAGCCGAAGCTATTTCGAAC
* *
50683787 TTGCACACTTAGTGCCATTTATAGCCGAAGCTATTTCGAAC
1 -CGCACACTTAGTGCCATATATAGCCGAAGCTATTTCGAAC
*
50683828 CACACACTTAGTGCC
1 CGCACACTTAGTGCC
50683843 GAACATAGTC
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 41 0.84
41 8 0.16
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.26
Consensus pattern (40 bp):
CGCACACTTAGTGCCATATATAGCCGAAGCTATTTCGAAC
Found at i:50687289 original size:39 final size:39
Alignment explanation
Indices: 50687246--50687398 Score: 207
Period size: 39 Copynumber: 3.9 Consensus size: 39
50687236 CCAGACATAT
* * * *
50687246 TTCCAGCACGTAGCCTGTGAATCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGTGGACCTTAAGTCCGGATATAA
*
50687285 TTCCAGCACATAGCCTGTGGACCTTAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGTGGACCTTAAGTCCGGATATAA
** *
50687324 TTCCAGCACATAGCCTACGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGTGGACCTTAAGTCCGGATATAA
* * *
50687363 TTCCAACACATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGTGGACCTTAAGTCCGGATA
50687399 AACATCACTG
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 103 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGTGGACCTTAAGTCCGGATATAA
Found at i:50687291 original size:78 final size:78
Alignment explanation
Indices: 50687218--50687390 Score: 195
Period size: 78 Copynumber: 2.2 Consensus size: 78
50687208 ACCAGCTCGA
* * * ** * * *
50687218 AGCCTGCGGGA-CTTTAGCCCAGACATATTTCCAGCACGTAGCCTGTGAATCTTAAGTCCGGTTA
1 AGCCTG-GGGACCTTAAGCCCAGACATAATTCCAGCACATAGCCTACGAACCCTAAGTCCGGATA
50687282 TAATTCCAGCACAT
65 TAATTCCAGCACAT
* * * *
50687296 AGCCTGTGGACCTTAAGTCCAGATATAATTCCAGCACATAGCCTACGGACCCTAAGTCCGGATAT
1 AGCCTGGGGACCTTAAGCCCAGACATAATTCCAGCACATAGCCTACGAACCCTAAGTCCGGATAT
*
50687361 AATTCCAACACAT
66 AATTCCAGCACAT
* *
50687374 AGCCTGCGGACCCTAAG
1 AGCCTGGGGACCTTAAG
50687391 TCCGGATAAA
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
77 3 0.04
78 76 0.96
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (78 bp):
AGCCTGGGGACCTTAAGCCCAGACATAATTCCAGCACATAGCCTACGAACCCTAAGTCCGGATAT
AATTCCAGCACAT
Found at i:50706107 original size:44 final size:42
Alignment explanation
Indices: 50705971--50706127 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 42
50705961 AGCATATACA
* *
50705971 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATC--ATATCG
* * *
50706014 ATGCCACTGTCACAGACAG-GGTCTTACACG-AAATCAAATACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGTAAATCATAT-CG
* *
50706056 ATGCCAATGTCCCAGACGTAGTCTCACACGTAAATCATTAGTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCA-TA-TCG
50706100 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
50706128 TGAAAAAACA
Statistics
Matches: 95, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
41 4 0.04
42 26 0.27
43 34 0.36
44 30 0.32
45 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCATATCG
Found at i:50706116 original size:86 final size:85
Alignment explanation
Indices: 50705966--50706132 Score: 212
Period size: 85 Copynumber: 2.0 Consensus size: 85
50705956 CGGAAAGCAT
* * * *
50705966 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCACAGAC
1 ATACAATGCCAACGTCCCAGACGTAGTCTCACACGTAATCAAATATCGATGCCAATGTCACAGAC
50706031 AG-GGTCTTACACGAAATCAA
66 -GTGGTCTTACACGAAATCAA
* * * *
50706051 ATACGATGCCAATGTCCCAGACGTAGTCTCACACGTAAATC-ATTAGTCGATGCCAATGTCCCAG
1 ATACAATGCCAACGTCCCAGACGTAGTCTCACACGT-AATCAAATA-TCGATGCCAATGTCACAG
*
50706115 ACGTGGTCTTACATGAAA
64 ACGTGGTCTTACACGAAA
50706133 AAACATATCA
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
85 35 0.50
86 35 0.50
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (85 bp):
ATACAATGCCAACGTCCCAGACGTAGTCTCACACGTAATCAAATATCGATGCCAATGTCACAGAC
GTGGTCTTACACGAAATCAA
Found at i:50713611 original size:44 final size:44
Alignment explanation
Indices: 50713528--50713611 Score: 116
Period size: 43 Copynumber: 1.9 Consensus size: 44
50713518 AGCTCGTACA
** *
50713528 ATGCCAACGTCCTAGACGTGGTCTTACACGTAAATCATAAATCG
1 ATGCCAACGTCCTAGACGTGGTCTTACACAAAAAACATAAATCG
*
50713572 ATGCCAAGGTCC-AGACGTGGTCTTACACAAAAACACATAA
1 ATGCCAACGTCCTAGACGTGGTCTTACACAAAAA-ACATAA
50713612 CGGATCCTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 19 0.54
44 16 0.46
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (44 bp):
ATGCCAACGTCCTAGACGTGGTCTTACACAAAAAACATAAATCG
Found at i:50725066 original size:40 final size:40
Alignment explanation
Indices: 50725011--50725230 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
50725001 TATTCGAATG
* * *
50725011 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
50725051 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
50725091 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGA-T
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
50725130 -TATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
50725169 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
50725209 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
50725231 TACTTGGGTT
Statistics
Matches: 165, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
38 35 0.21
39 16 0.10
40 112 0.68
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:50725172 original size:78 final size:79
Alignment explanation
Indices: 50725011--50725230 Score: 336
Period size: 78 Copynumber: 2.8 Consensus size: 79
50725001 TATTCGAATG
* *
50725011 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGGCA
*
50725076 TTTGTGCTATTGATT
65 TTTGTGCTATTGACT
*
50725091 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAT-TATCCGGGCTAAGTCCCGAAGGCTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGGCAT
50725155 TTGTGCTATTGACT
66 TTGTGCTATTGACT
* * * *
50725169 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATATATCCGGGCTAAGTCCCGAAGG
50725231 TACTTGGGTT
Statistics
Matches: 130, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
78 70 0.54
79 19 0.15
80 41 0.32
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCTATTGACT
Found at i:50733551 original size:40 final size:40
Alignment explanation
Indices: 50733455--50733635 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
50733445 TATTCGAATG
* * * *
50733455 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
50733495 A-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
50733534 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
50733574 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
50733614 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
50733636 TACTTGGGTT
Statistics
Matches: 129, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 50 0.39
40 76 0.59
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:50733631 original size:79 final size:79
Alignment explanation
Indices: 50733455--50733635 Score: 249
Period size: 79 Copynumber: 2.3 Consensus size: 79
50733445 TATTCGAATG
* * *
50733455 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATTAATCCGGGCTAAGTCCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTAATCCGGGCTAAGACCCGAAGGCAT
* *
50733520 TTGTGCTATTGATT
66 TTGTGCGATTGACT
* * *
50733534 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTA-ATCCGGGCTAAGACCCGAAGGCA
50733599 TTTGTGCGAGTTG-CT
65 TTTGTGCGA-TTGACT
*
50733614 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
50733636 TACTTGGGTT
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
79 51 0.56
80 37 0.41
81 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.29
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTAATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGATTGACT
Found at i:50746069 original size:44 final size:44
Alignment explanation
Indices: 50745967--50746270 Score: 170
Period size: 46 Copynumber: 6.6 Consensus size: 44
50745957 GTCGATGCCG
* * * *
50745967 TGTCCCAGACAGGTCATACACTAACACATGTAACCGT-GCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCT---CGTAGCCGATGCA
* *
50746013 TGTCCCAAACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCA
* *
50746057 TGTCCCAGACATGTCTGACACTGGCTAACATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC--ACATCTCGTA-GCCGATGCA
* * * * * *
50746103 TGTCCAAGACATGTCTTACACTGGCTC-TCATAATGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTAGCACATC-T--CGTAGCCGATGCA
* * * *
50746149 TTTCCAAGACATGTCTTACACTAGC-CCTCGTC-TCAATGCTGATGCCA
1 TGTCCCAGACATGTCTTACACTAGCACATC-TCGT--A-GCCGATG-CA
* * * * * *
50746196 TGTCCCAGATATGGTCTTTCACTGGCTATCATAAT-ATGGCCGATGCA
1 TGTCCCAGACAT-GTCTTACACTAGC-A-CAT-CTCGTAGCCGATGCA
* *
50746243 TGTTCCAGACATGTCTTACACTGGCACA
1 TGTCCCAGACATGTCTTACACTAGCACA
50746271 CAAATCTCAT
Statistics
Matches: 206, Mismatches: 33, Indels: 40
0.74 0.12 0.14
Matches are distributed among these distances:
43 6 0.03
44 34 0.17
45 3 0.01
46 119 0.58
47 23 0.11
48 17 0.08
51 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCA
Found at i:50746125 original size:46 final size:46
Alignment explanation
Indices: 50746004--50746267 Score: 211
Period size: 46 Copynumber: 5.7 Consensus size: 46
50745994 ATGTAACCGT
*
50746004 GCCGATGCATGTCCCAA-ACATGTCTTACACTAGC-A-CATCTCGTA-
1 GCCGATGCATGT-CCAAGACATGTCTTACACTGGCTATCATCTCG-AG
* * * *
50746048 GCCGACGCATGTCCCAGACATGTCTGACACTGGCTAACATCTCGAG
1 GCCGATGCATGTCCAAGACATGTCTTACACTGGCTATCATCTCGAG
* * *
50746094 GCCGATGCATGTCCAAGACATGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCATGTCCAAGACATGTCTTACACTGGCTATCAT-CTCGAG
* * * ** * * *
50746140 GCTGATGCATTTCCAAGACATGTCTTACACTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCAAGACATGTCTTACACTGGCTATCATCTCGAG
* * * * *
50746186 GCTGATGCCATGTCCCAGATATGGTCTTTCACTGGCTATCATAAT--ATG
1 GCCGATG-CATGTCCAAGACAT-GTCTTACACTGGCTATCAT-CTCGA-G
50746234 GCCGATGCATGTTCC-AGACATGTCTTACACTGGC
1 GCCGATGCATG-TCCAAGACATGTCTTACACTGGC
50746268 ACACAAATCT
Statistics
Matches: 176, Mismatches: 33, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
43 3 0.02
44 26 0.15
45 3 0.02
46 98 0.56
47 22 0.12
48 23 0.13
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCAAGACATGTCTTACACTGGCTATCATCTCGAG
Found at i:50746308 original size:94 final size:94
Alignment explanation
Indices: 50746048--50746279 Score: 229
Period size: 94 Copynumber: 2.5 Consensus size: 94
50746038 ACATCTCGTA
* * * * * * * * * *
50746048 GCCGACGCATGTCCCAGACATGTCTGACACT-GGCTAACATCTCGAGGCCGATG-CATGTCCAAG
1 GCCGATGCATTTCCAAGACATGTCTTACACTAGCCCAA-ATCTCAATGCTGATGCCATGTCCCAG
* * *
50746111 ACAT-GTCTTACACTGGCTCTCATAATGTG
65 ACATGGTCTTTCACTGGCTATCATAATATG
* ***
50746140 GCTGATGCATTTCCAAGACATGTCTTACACTAGCCCTCGTCTCAATGCTGATGCCATGTCCCAGA
1 GCCGATGCATTTCCAAGACATGTCTTACACTAGCCCAAATCTCAATGCTGATGCCATGTCCCAGA
*
50746205 TATGGTCTTTCACTGGCTATCATAATATG
66 CATGGTCTTTCACTGGCTATCATAATATG
*
50746234 GCCGATGCATGTTCC-AGACATGTCTTACACTGGCACACAAATCTCA
1 GCCGATGCAT-TTCCAAGACATGTCTTACACTAGC-C-CAAATCTCA
50746280 TGTATTGCCA
Statistics
Matches: 111, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
92 37 0.33
93 14 0.13
94 49 0.44
95 5 0.05
96 6 0.05
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (94 bp):
GCCGATGCATTTCCAAGACATGTCTTACACTAGCCCAAATCTCAATGCTGATGCCATGTCCCAGA
CATGGTCTTTCACTGGCTATCATAATATG
Found at i:50752618 original size:38 final size:38
Alignment explanation
Indices: 50752556--50752684 Score: 177
Period size: 38 Copynumber: 3.4 Consensus size: 38
50752546 CACTCGATAC
* *
50752556 ATATCAGGGTTAAGTCCCGCAGGCTTCGTGCTGGTAAT
1 ATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * *
50752594 ATATCTGGGTTAAATCCGGTAGGCTTCATGCTGGTAAT
1 ATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* *
50752632 ATATCTGGGTTAAATCCCGCAGGCTTAGTGCTGGTACT
1 ATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
50752670 ATATCCGGGCTTAAA
1 ATATCTGGG-TTAAA
50752685 GTTCGACAAG
Statistics
Matches: 79, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
38 74 0.94
39 5 0.06
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (38 bp):
ATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:50760242 original size:38 final size:38
Alignment explanation
Indices: 50760186--50760265 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 38
50760176 CACTCGATAC
* *
50760186 ATATCCGGGTTAAGTCCCGCAGACTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGACTTCATGCTGGTAAT
* *
50760224 ATATCTGGGTTAAATCCCGCAGGCTTCATGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGACTTCATGCTGGTAAT
50760262 ATAT
1 ATAT
50760266 GTAACACCCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGACTTCATGCTGGTAAT
Found at i:50761354 original size:46 final size:46
Alignment explanation
Indices: 50761287--50761469 Score: 312
Period size: 46 Copynumber: 4.0 Consensus size: 46
50761277 TATATACACA
*
50761287 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
*
50761333 CATCTCATACACGTTTCGCATTAGCCATTCGAATTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
50761379 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
* * * *
50761425 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTGCCACATAT
1 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATAT
50761470 ATACACTTCC
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 130 1.00
ACGTcount: A:0.24, C:0.32, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
Found at i:50761514 original size:47 final size:47
Alignment explanation
Indices: 50761443--50761728 Score: 457
Period size: 47 Copynumber: 6.1 Consensus size: 47
50761433 ACACATTTCG
* * ** * * *
50761443 CATTAGCCATTCGGCTTTGCCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
**
50761490 CATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
50761537 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
50761584 CATTGGCCATTCGGCCTTATCACAAATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
50761631 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
50761678 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
50761725 CATT
1 CATT
50761729 AAATCCTAAA
Statistics
Matches: 224, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 223 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:50765807 original size:47 final size:47
Alignment explanation
Indices: 50765729--50766134 Score: 659
Period size: 47 Copynumber: 8.6 Consensus size: 47
50765719 GCCCTTCGGA
* * * * * *
50765729 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50765776 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50765823 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50765870 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50765917 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50765966 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50766015 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50766062 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50766109 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
50766135 CACAATTATC
Statistics
Matches: 339, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 244 0.72
49 95 0.28
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50766065 original size:192 final size:190
Alignment explanation
Indices: 50765729--50766135 Score: 678
Period size: 192 Copynumber: 2.2 Consensus size: 190
50765719 GCCCTTCGGA
* * * *
50765729 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
50765792 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
*
50765857 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50765917 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATAT
* *
50765982 ACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCA
50766047 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50766109 CTTATCACATATATATACA--TTCACATC
1 CTTATCACATATATATACACTTTCACATC
50766136 ACAATTATCC
Statistics
Matches: 204, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
188 10 0.05
189 1 0.00
190 44 0.22
192 149 0.73
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50769370 original size:25 final size:25
Alignment explanation
Indices: 50769336--50769390 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
50769326 CGGTTAAAGA
50769336 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
50769361 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
50769386 ATTCG
1 ATTCG
50769391 TTATTACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:50769619 original size:40 final size:40
Alignment explanation
Indices: 50769554--50769909 Score: 552
Period size: 40 Copynumber: 8.9 Consensus size: 40
50769544 GATTACACAT
* * * **
50769554 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
50769594 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* *
50769634 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
50769674 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* *
50769714 CACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* *
50769753 CACCAGCACGAATGCTCTTCGGGACTTATCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* *
50769793 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
50769833 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
50769873 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
50769910 TATATAACTC
Statistics
Matches: 288, Mismatches: 27, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
39 36 0.12
40 252 0.88
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
Found at i:50769683 original size:80 final size:80
Alignment explanation
Indices: 50769550--50769911 Score: 663
Period size: 80 Copynumber: 4.5 Consensus size: 80
50769540 GCCTGATTAC
** * * *
50769550 ACATCACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
50769615 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
50769630 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
50769695 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
50769710 ACATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
*
50769774 GGACTTATCCCGGAT
66 GGACTTAGCCCGGAT
50769789 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
50769854 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
50769869 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
50769912 TATAACTCTC
Statistics
Matches: 274, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
79 78 0.28
80 196 0.72
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.21
Consensus pattern (80 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
GGACTTAGCCCGGAT
Found at i:50769864 original size:159 final size:160
Alignment explanation
Indices: 50769550--50769911 Score: 663
Period size: 159 Copynumber: 2.3 Consensus size: 160
50769540 GCCTGATTAC
** * *
50769550 ACATCACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
50769615 GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAG
66 GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAG
50769680 CACGAATGCTCTTCGGGACTTAGCCCGGAT
131 CACGAATGCTCTTCGGGACTTAGCCCGGAT
50769710 ACATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
*
50769774 GGACTTATCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAG
66 GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAG
50769839 CACGAATGCTCTTCGGGACTTAGCCCGGAT
131 CACGAATGCTCTTCGGGACTTAGCCCGGAT
*
50769869 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATA
50769912 TATAACTCTC
Statistics
Matches: 196, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
159 157 0.80
160 39 0.20
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.21
Consensus pattern (160 bp):
ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAG
CACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:50771441 original size:46 final size:46
Alignment explanation
Indices: 50771388--50771556 Score: 320
Period size: 46 Copynumber: 3.7 Consensus size: 46
50771378 TATATACACA
*
50771388 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
50771434 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
50771480 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
*
50771526 CATCTCATACACATTTCGCATTAGCCATTCG
1 CATCTCATACACGTTTCGCATTAGCCATTCG
50771557 GCTTGCCACA
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 121 1.00
ACGTcount: A:0.24, C:0.33, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
Found at i:50771599 original size:92 final size:91
Alignment explanation
Indices: 50771388--50771601 Score: 270
Period size: 92 Copynumber: 2.3 Consensus size: 91
50771378 TATATACACA
* * * *
50771388 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACGTTTCGC
1 CATCACATACACGTTTCACATTAGCCATTCGACTTTACCTCATATCCATCTCATACACATTTCGC
*
50771453 ATTAGCCATTCGACTTTACCTCATAT
66 ATTAGCCATTCGACTTTACCACATAT
* *
50771479 CCATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATCCATCTCATACACATTTCG
1 -CATCACATACACGTTTCACATTAGCCATTCGACTTTACCTCATATCCATCTCATACACATTTCG
* *
50771544 CATTAGCCATTCGGC-TTGCCACATAT
65 CATTAGCCATTCGACTTTACCACATAT
* * *
50771570 -ATACACTTCCACGTTCATCACATTGGCCATTC
1 CAT-CACATACACGTT--TCACATTAGCCATTC
50771602 TACCTTATCA
Statistics
Matches: 109, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
89 2 0.02
90 9 0.08
91 9 0.08
92 89 0.82
ACGTcount: A:0.24, C:0.33, G:0.10, T:0.34
Consensus pattern (91 bp):
CATCACATACACGTTTCACATTAGCCATTCGACTTTACCTCATATCCATCTCATACACATTTCGC
ATTAGCCATTCGACTTTACCACATAT
Found at i:50771617 original size:47 final size:47
Alignment explanation
Indices: 50771544--50771828 Score: 457
Period size: 47 Copynumber: 6.1 Consensus size: 47
50771534 ACACATTTCG
* ** * * *
50771544 CATTAGCCATTCGG-CTTGCCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
**
50771590 CATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
50771637 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
50771684 CATTGGCCATTCGGCCTTATCACAAATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
50771731 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
50771778 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
50771825 CATT
1 CATT
50771829 AAATCCTAAA
Statistics
Matches: 224, Mismatches: 13, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
46 12 0.05
47 212 0.95
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:50775929 original size:27 final size:27
Alignment explanation
Indices: 50775892--50775972 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
50775882 ATCTCGTATC
*
50775892 TGTAGGCTAGAATTACTGAAATACCCT
1 TGTAGGATAGAATTACTGAAATACCCT
* * * *
50775919 TGTAGGGTAGAAGTACTGAAATGCCCC
1 TGTAGGATAGAATTACTGAAATACCCT
* **
50775946 TGTAGGATAAAATTACCAAAATACCCT
1 TGTAGGATAGAATTACTGAAATACCCT
50775973 CGACCTGTAA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
TGTAGGATAGAATTACTGAAATACCCT
Found at i:50776008 original size:27 final size:27
Alignment explanation
Indices: 50775953--50776108 Score: 156
Period size: 27 Copynumber: 5.8 Consensus size: 27
50775943 CCCTGTAGGA
* **
50775953 TAAAATTACCAAAATA-CCCTCGACCTG
1 TAAAATTACCAAAATACCCCTAG-TTTG
**
50775980 TAAGTTTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
50776007 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
*
50776034 TAAAATTACCAAAATACCTCT-GATTTG
1 TAAAATTACCAAAATACCCCTAG-TTTG
* ** * *
50776061 TGAAATTACTGAAATA-CCCTCGACTTG
1 TAAAATTACCAAAATACCCCTAG-TTTG
*
50776088 TAAAATTACCAAAGTACCCCT
1 TAAAATTACCAAAATACCCCT
50776109 GATTTACAGA
Statistics
Matches: 108, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.04
27 95 0.88
28 9 0.08
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTAGTTTG
Found at i:50776111 original size:54 final size:54
Alignment explanation
Indices: 50775953--50776113 Score: 200
Period size: 54 Copynumber: 3.0 Consensus size: 54
50775943 CCCTGTAGGA
* **
50775953 TAAAATTACCAAAATACCCTCGACCTGTAAGTTTACCAAAATACCCCT-AGTTTG
1 TAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTGA-TTTG
* * *
50776007 TAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCTCTGATTTG
1 TAAAATTACCAAAATACCCTCGA-CTTGTAAAATTACCAAAATACCCCTGATTTG
* ** *
50776061 TGAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGATTT
1 TAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTGATTT
50776114 ACAGAATTAC
Statistics
Matches: 91, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
53 2 0.02
54 86 0.95
55 3 0.03
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTGATTTG
Found at i:50776132 original size:27 final size:27
Alignment explanation
Indices: 50776105--50776403 Score: 384
Period size: 27 Copynumber: 11.1 Consensus size: 27
50776095 ACCAAAGTAC
**
50776105 CCCT-GATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* *
50776131 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* * *
50776158 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
*
50776185 CCCTCAATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* **
50776212 CCCTCAATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
*
50776239 CCCTCGATTTACAAAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* *
50776266 CCCTCGATTTACAAAATTATTATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* * *
50776293 TCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* *
50776320 CCCTCGATTTATAAAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
50776347 CCCTCGATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* * * *
50776374 CCCTCAATTTATAAAATTACAATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
50776401 CCC
1 CCC
50776404 CTAGGGTGTT
Statistics
Matches: 242, Mismatches: 30, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
26 4 0.02
27 238 0.98
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACTATTTTA
Found at i:50776149 original size:81 final size:81
Alignment explanation
Indices: 50776064--50776393 Score: 394
Period size: 81 Copynumber: 4.1 Consensus size: 81
50776054 TGATTTGTGA
** * ** *** **
50776064 AATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCC-CTGATTTACAGAATTACCGTT
1 AATTACTGATTTACCCTCGATTTACAAAATTACCATTTTACCCTC-GATTTACAGAATTACTATT
*
50776128 TTACCCTCGATTTATAG
65 TTACCCTCAATTTATAG
* * *
50776145 AATTACTGTTTTACCCTCAATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACTATTT
1 AATTACTGATTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTT
*
50776210 TACCCTCAATTTACAG
66 TACCCTCAATTTATAG
* * * * *
50776226 AATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTATTATTT
1 AATTACTGATTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTT
* *
50776291 TATCCTCGATTTATAG
66 TACCCTCAATTTATAG
* * *
50776307 AATTAC-CATTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATT
1 AATTACTGA-TTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATT
*
50776371 TTACCCTCAATTTATAA
65 TTACCCTCAATTTATAG
50776388 AATTAC
1 AATTAC
50776394 AATTTTACCC
Statistics
Matches: 215, Mismatches: 32, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
81 214 1.00
82 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (81 bp):
AATTACTGATTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTT
TACCCTCAATTTATAG
Found at i:50776399 original size:81 final size:81
Alignment explanation
Indices: 50776105--50776403 Score: 438
Period size: 81 Copynumber: 3.7 Consensus size: 81
50776095 ACCAAAGTAC
** * ** *
50776105 CCCT-GATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTA
1 CCCTCGATTTACAGAATTACTATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTA
*
50776169 CAAAATTACCATTTTA
66 CAAAATTACTATTTTA
* * *
50776185 CCCTCAATTTACAGAATTACTATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTACAGAATTACTATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTA
50776250 CAAAATTACTATTTTA
66 CAAAATTACTATTTTA
* * * *
50776266 CCCTCGATTTACAAAATTATTATTTTATCCTCGATTTATAGAATTACCATTTTACCCTCGATTTA
1 CCCTCGATTTACAGAATTACTATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTA
*
50776331 TAAAATTACTATTTTA
66 CAAAATTACTATTTTA
* *
50776347 CCCTCGATTTACAGAATTACTATTTTACCCTCAATTTATAAAATTACAATTTTACCC
1 CCCTCGATTTACAGAATTACTATTTTACCCTCAATTTATAGAATTACCATTTTACCC
50776404 CTAGGGTGTT
Statistics
Matches: 196, Mismatches: 22, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
80 4 0.02
81 192 0.98
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (81 bp):
CCCTCGATTTACAGAATTACTATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTA
CAAAATTACTATTTTA
Found at i:50776922 original size:31 final size:31
Alignment explanation
Indices: 50776887--50776954 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
50776877 TTGCATTCAC
* * * *
50776887 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
*
50776918 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
50776949 ATTCTG
1 ATTCTG
50776955 TCACCTGATT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTAATACTG
Found at i:50776926 original size:6 final size:6
Alignment explanation
Indices: 50776887--50776999 Score: 54
Period size: 6 Copynumber: 18.3 Consensus size: 6
50776877 TTGCATTCAC
* * *
50776887 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
50776936 -TCACCTA ATTCTG ATTCTG -TCACCTG ATTCTA ATTCTG ATTCTC ATTTTG
1 AT--TCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
50776986 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
50777000 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 18, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
5 5 0.06
6 61 0.78
7 9 0.12
8 3 0.04
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:50776933 original size:12 final size:12
Alignment explanation
Indices: 50776918--50776999 Score: 60
Period size: 12 Copynumber: 6.7 Consensus size: 12
50776908 CCTGATACTG
50776918 ATTCTGATTCTA
1 ATTCTGATTCTA
*
50776930 ATTCTG-TCACCTA
1 ATTCTGAT--TCTA
50776943 ATTCTGATTCT-
1 ATTCTGATTCTA
* *
50776954 GTCACCTGATTCTA
1 AT--TCTGATTCTA
*
50776968 ATTCTGATTCTC
1 ATTCTGATTCTA
*
50776980 ATTTTGATTCTA
1 ATTCTGATTCTA
*
50776992 GTTCTGAT
1 ATTCTGAT
50777000 AATGTTTCTT
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
11 2 0.04
12 32 0.60
13 17 0.32
14 2 0.04
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.48
Consensus pattern (12 bp):
ATTCTGATTCTA
Found at i:50776952 original size:19 final size:19
Alignment explanation
Indices: 50776924--50776973 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
50776914 ACTGATTCTG
50776924 ATTCTAATTCTGTCACCTA
1 ATTCTAATTCTGTCACCTA
* *
50776943 ATTCTGATTCTGTCACCTG
1 ATTCTAATTCTGTCACCTA
50776962 ATTCTAATTCTG
1 ATTCTAATTCTG
50776974 ATTCTCATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (19 bp):
ATTCTAATTCTGTCACCTA
Found at i:50780735 original size:25 final size:25
Alignment explanation
Indices: 50780707--50780766 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
50780697 CTCAGTTCAT
*
50780707 ATGAGCTTA-TCGTTATTTAGCTCGC
1 ATGAGCTTACT-GTTACTTAGCTCGC
*
50780732 ATGAGCTTACTGTTACTTAGCTCGT
1 ATGAGCTTACTGTTACTTAGCTCGC
50780757 ATGAGCTTAC
1 ATGAGCTTAC
50780767 CGATTACAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (25 bp):
ATGAGCTTACTGTTACTTAGCTCGC
Found at i:50780786 original size:24 final size:24
Alignment explanation
Indices: 50780750--50780795 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
50780740 ACTGTTACTT
* *
50780750 AGCTCGTATGAGCTTACCGATTAC
1 AGCTCGTAAGAGCATACCGATTAC
*
50780774 AGCTTGTAAGAGCATACCGATT
1 AGCTCGTAAGAGCATACCGATT
50780796 CAAAGCTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AGCTCGTAAGAGCATACCGATTAC
Found at i:50787694 original size:46 final size:45
Alignment explanation
Indices: 50787641--50787816 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
50787631 TATTTGGGCA
*
50787641 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * * *
50787687 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTGGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGCGAAG
*
50787734 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
50787780 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50787817 CCGGGTTACA
Statistics
Matches: 108, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
44 4 0.04
45 1 0.01
46 66 0.61
47 32 0.30
48 1 0.01
49 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:50787794 original size:93 final size:93
Alignment explanation
Indices: 50787635--50787808 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
50787625 CTAGGATATT
* * *
50787635 TGGGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTG
1 TGGGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTG
50787700 AGTTGAGTCCGAGTTCGAGAGATGTAAC
66 AGTTGAGTCCGAGTTCGAGAGATGTAAC
* * *
50787728 TGGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTG
1 TGGGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTG
*
50787793 AGTTGAGTCTGAGTTC
66 AGTTGAGTCCGAGTTC
50787809 ACTTATGGCC
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
TGGGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTG
AGTTGAGTCCGAGTTCGAGAGATGTAAC
Found at i:50794051 original size:19 final size:19
Alignment explanation
Indices: 50794014--50794061 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
50794004 AAATAGTAAG
*
50794014 AATT-TATTTTTAAGTATA
1 AATTCTATTTTTAAGAATA
*
50794032 AATTCTATTTTTCAGAATA
1 AATTCTATTTTTAAGAATA
50794051 ACGATTCTATT
1 A--ATTCTATT
50794062 GGTTTCAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.16
19 13 0.52
21 8 0.32
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.50
Consensus pattern (19 bp):
AATTCTATTTTTAAGAATA
Found at i:50795663 original size:3 final size:3
Alignment explanation
Indices: 50795655--50795682 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
50795645 ATTTAATTTC
50795655 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
50795683 TCTTTTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:50801643 original size:19 final size:19
Alignment explanation
Indices: 50801609--50801650 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
50801599 TCACGTCAAT
*
50801609 AAATAATTTAAAAATATAA
1 AAATAATTTAAAAATAAAA
50801628 AAAT-ATTTAAATAATAAAA
1 AAATAATTTAAA-AATAAAA
50801647 AAAT
1 AAAT
50801651 CAAATTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AAATAATTTAAAAATAAAA
Found at i:50805312 original size:28 final size:28
Alignment explanation
Indices: 50805244--50805425 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
50805234 CATGAGATTG
* * * *
50805244 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
50805273 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
50805301 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
50805329 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
50805357 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
50805385 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
50805412 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
50805426 GACTTAATAT
Statistics
Matches: 144, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 23 0.16
28 103 0.72
29 18 0.12
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:50813482 original size:28 final size:28
Alignment explanation
Indices: 50813414--50813622 Score: 332
Period size: 28 Copynumber: 7.5 Consensus size: 28
50813404 CATGAGATTG
* * * *
50813414 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
50813443 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
50813471 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
50813499 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
50813527 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
50813555 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
50813583 GCACTAAGTGTG-GAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
50813609 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
50813623 GACTTAATAT
Statistics
Matches: 170, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
26 21 0.12
27 3 0.02
28 128 0.75
29 18 0.11
ACGTcount: A:0.28, C:0.11, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:50816345 original size:33 final size:34
Alignment explanation
Indices: 50816307--50816388 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
50816297 GCCTAAGCCC
*
50816307 ATTCAGATAACAGTAATACTAGGCCAGAG-CCCTT
1 ATTCAGATAACAGTAA-ACTAGGACAGAGCCCCTT
* * * **
50816341 -TTCAGATTACATTAAACTGGGACTTAGCCCCTT
1 ATTCAGATAACAGTAAACTAGGACAGAGCCCCTT
50816374 ATTCAGATAACAGTA
1 ATTCAGATAACAGTA
50816389 TGGCCCATAG
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 8 0.21
33 18 0.47
34 12 0.32
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (34 bp):
ATTCAGATAACAGTAAACTAGGACAGAGCCCCTT
Found at i:50816727 original size:26 final size:26
Alignment explanation
Indices: 50816698--50816750 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
50816688 TCCAACATGC
50816698 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
50816724 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
50816750 A
1 A
50816751 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:50818035 original size:24 final size:23
Alignment explanation
Indices: 50817998--50818103 Score: 140
Period size: 24 Copynumber: 4.4 Consensus size: 23
50817988 GCCGGCCAAC
50817998 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTT-ATCAGCTCCTAAA
*
50818023 TCTTCTCCTTGATCAGCTCCTAAA
1 TCCTCTCCTT-ATCAGCTCCTAAA
*
50818047 TCCTCTCCCTTATCAGCTCCTCAA
1 TCCTCT-CCTTATCAGCTCCTAAA
50818071 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCT-CCTTATCAGCTCCTAAA
*
50818095 TCTTCTCCT
1 TCCTCTCCT
50818104 GACAGCCTTT
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
23 3 0.04
24 65 0.87
25 7 0.09
ACGTcount: A:0.18, C:0.40, G:0.07, T:0.36
Consensus pattern (23 bp):
TCCTCTCCTTATCAGCTCCTAAA
Found at i:50819651 original size:22 final size:22
Alignment explanation
Indices: 50819597--50819653 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
50819587 AAAGAGAATG
*
50819597 ATATGTATCATGACATGTATATAT
1 ATATGTAT-AT-ACATATATATAT
** *
50819621 ATACATATATACATATATGTAT
1 ATATGTATATACATATATATAT
50819643 ATATGTATATA
1 ATATGTATATA
50819654 TGAAATATTG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
22 19 0.70
23 2 0.07
24 6 0.22
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (22 bp):
ATATGTATATACATATATATAT
Found at i:50819669 original size:116 final size:117
Alignment explanation
Indices: 50819535--50819772 Score: 451
Period size: 116 Copynumber: 2.0 Consensus size: 117
50819525 AAACTATGGC
50819535 ATATGAAATATTGATATAATGAAATAAATGATATGTGTTTATAAGAAAACAGAAAGAGAATGATA
1 ATATGAAATATTGATATAATGAAATAAATGATATGTGTTTATAAGAAAACAGAAAGAGAATGATA
**
50819600 TGTATCATGACATGTATATATATA-CATATATACATATATGTATATATGTAT
66 TGTATCATGACATGTATATATATATCATATATACATATATACATATATGTAT
50819651 ATATGAAATATTGATATAATGAAATAAATGATATGTGTTTATAAGAAAACAGAAAGAGAATGATA
1 ATATGAAATATTGATATAATGAAATAAATGATATGTGTTTATAAGAAAACAGAAAGAGAATGATA
50819716 TGTATCATGACATGTATATATATATCATATATACATATATACATATATGTAT
66 TGTATCATGACATGTATATATATATCATATATACATATATACATATATGTAT
50819768 ATATG
1 ATATG
50819773 TATATATGTA
Statistics
Matches: 119, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
116 89 0.75
117 30 0.25
ACGTcount: A:0.47, C:0.05, G:0.13, T:0.35
Consensus pattern (117 bp):
ATATGAAATATTGATATAATGAAATAAATGATATGTGTTTATAAGAAAACAGAAAGAGAATGATA
TGTATCATGACATGTATATATATATCATATATACATATATACATATATGTAT
Found at i:50819737 original size:2 final size:2
Alignment explanation
Indices: 50819730--50819787 Score: 62
Period size: 2 Copynumber: 28.5 Consensus size: 2
50819720 TCATGACATG
* * * *
50819730 TA TA TA TA TA TCA TA TA TA CA TA TA TA CA TA TA TG TA TA TA TG
1 TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
50819773 TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA T
50819788 GACTAGTCTC
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
2 43 0.96
3 2 0.04
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.47
Consensus pattern (2 bp):
TA
Found at i:50820625 original size:14 final size:14
Alignment explanation
Indices: 50820606--50820634 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
50820596 GGGTTTGTAC
50820606 TAAATTGCATGAAT
1 TAAATTGCATGAAT
50820620 TAAATTGCATGAAT
1 TAAATTGCATGAAT
50820634 T
1 T
50820635 TGCAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (14 bp):
TAAATTGCATGAAT
Found at i:50823157 original size:48 final size:48
Alignment explanation
Indices: 50823075--50823199 Score: 153
Period size: 48 Copynumber: 2.6 Consensus size: 48
50823065 ATACTAGGGT
* * * *
50823075 TATGGGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCATCGA
* * * *
50823123 TATGTA-AGCCAGTGTAAGATCATGTTTGGAACATGGCATCCGCATTGA
1 TATG-AGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCATCGA
*
50823171 TATGAGAGCTAGTGTAAGACCATGTCTGG
1 TATGAGAGCCAGTGTAAGACCATGTCTGG
50823200 GGTAATACCA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
47 1 0.02
48 63 0.98
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCATCGA
Found at i:50823209 original size:17 final size:17
Alignment explanation
Indices: 50823184--50823217 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50823174 GAGAGCTAGT
50823184 GTAAGACCATGTCTGGG
1 GTAAGACCATGTCTGGG
* *
50823201 GTAATACCATGTTTGGG
1 GTAAGACCATGTCTGGG
50823218 ACATGGCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.29
Consensus pattern (17 bp):
GTAAGACCATGTCTGGG
Found at i:50823277 original size:48 final size:48
Alignment explanation
Indices: 50823201--50823520 Score: 320
Period size: 48 Copynumber: 6.6 Consensus size: 48
50823191 CATGTCTGGG
* * * * *
50823201 GTAATACCATGTTTGGGACATGGCATTGGCCTTGATATGTGAGCCAGT
1 GTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGAGAGCTAGT
* * * * *
50823249 GTAAGACCATTTTTGGAACATGACATTGGCATTTATATGAGAGCTAGT
1 GTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGAGAGCTAGT
* * * * *
50823297 GTAAGACCATGTCTGGGACATGGCATTGACCTTGATATGTGAGCTAGT
1 GTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGAGAGCTAGT
* * * *
50823345 GTAATACCATGTTTAGAACATGGCATCGACATTGATATGAGAGCTAGT
1 GTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGAGAGCTAGT
* ** *
50823393 GTAAGACCATGTCTAGG-ACATGGCATCGGCCTCAACATGTAG-GCTAGT
1 GTAAGACCATGT-TTGGAACATGGCATCGGCCTTGATATG-AGAGCTAGT
* * * *
50823441 GTAAAACCATGTTTGGAACATGGCATCGGCACTAGTATATGAAAGCCAGT
1 GTAAGACCATGTTTGGAACATGGCATCGGC-CTTG-ATATGAGAGCTAGT
* * *
50823491 GTAAGACCATGTCTGGGACATGACATCGGC
1 GTAAGACCATGTTTGGAACATGGCATCGGC
50823521 ATCTTACCCT
Statistics
Matches: 224, Mismatches: 42, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
47 3 0.01
48 179 0.80
49 7 0.03
50 35 0.16
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (48 bp):
GTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGAGAGCTAGT
Found at i:50823291 original size:113 final size:113
Alignment explanation
Indices: 50823088--50823313 Score: 344
Period size: 113 Copynumber: 2.0 Consensus size: 113
50823078 GGGAGCTAGT
*
50823088 GTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTAAGCCAGTGTAAGATCATGTTTGGA
1 GTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTAAGCCAGTGTAAGACCATGTTTGGA
*
50823153 ACATGGCATCCGCATTGATATGAGAGCTAGTGTAAGACCATGTCTGGG
66 ACATGACATCCGCATTGATATGAGAGCTAGTGTAAGACCATGTCTGGG
* * ** * * *
50823201 GTAATACCATGTTTGGGACATGGCATTGGCCTTGATATGTGAGCCAGTGTAAGACCATTTTTGGA
1 GTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTAAGCCAGTGTAAGACCATGTTTGGA
** *
50823266 ACATGACATTGGCATTTATATGAGAGCTAGTGTAAGACCATGTCTGGG
66 ACATGACATCCGCATTGATATGAGAGCTAGTGTAAGACCATGTCTGGG
50823314 ACATGGCATT
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
113 101 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (113 bp):
GTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTAAGCCAGTGTAAGACCATGTTTGGA
ACATGACATCCGCATTGATATGAGAGCTAGTGTAAGACCATGTCTGGG
Found at i:50823383 original size:96 final size:96
Alignment explanation
Indices: 50823201--50823512 Score: 410
Period size: 96 Copynumber: 3.2 Consensus size: 96
50823191 CATGTCTGGG
* * * * *
50823201 GTAATACCATGTTTGGGACATGGCATTGGCCTTGATATGTGAGCCAGTGTAAGACCATTTTTGGA
1 GTAAGACCATGTCTGGGACATGGCATTGGCCTTGATATGTGAGCTAGTGTAAAACCATGTTTGGA
* * *
50823266 ACATGACATTGGCATTTATATGAGAGCTAGT
66 ACATGGCATCGGCATTGATATGAGAGCTAGT
* * *
50823297 GTAAGACCATGTCTGGGACATGGCATTGACCTTGATATGTGAGCTAGTGTAATACCATGTTTAGA
1 GTAAGACCATGTCTGGGACATGGCATTGGCCTTGATATGTGAGCTAGTGTAAAACCATGTTTGGA
*
50823362 ACATGGCATCGACATTGATATGAGAGCTAGT
66 ACATGGCATCGGCATTGATATGAGAGCTAGT
* * ** *
50823393 GTAAGACCATGTCTAGGACATGGCATCGGCCTCAACATGT-AGGCTAGTGTAAAACCATGTTTGG
1 GTAAGACCATGTCTGGGACATGGCATTGGCCTTGATATGTGA-GCTAGTGTAAAACCATGTTTGG
* * *
50823457 AACATGGCATCGGCACTAGTATATGAAAGCCAGT
65 AACATGGCATCGGCA-TTG-ATATGAGAGCTAGT
50823491 GTAAGACCATGTCTGGGACATG
1 GTAAGACCATGTCTGGGACATG
50823513 ACATCGGCAT
Statistics
Matches: 189, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
95 1 0.01
96 153 0.81
97 2 0.01
98 33 0.17
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (96 bp):
GTAAGACCATGTCTGGGACATGGCATTGGCCTTGATATGTGAGCTAGTGTAAAACCATGTTTGGA
ACATGGCATCGGCATTGATATGAGAGCTAGT
Found at i:50824679 original size:25 final size:24
Alignment explanation
Indices: 50824645--50824691 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
50824635 TAAAGAAATG
*
50824645 GAAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAAGA-AAAAAAAATGAT
*
50824670 GAAAACAAAAGAAAAAAAAATG
1 GAAAAAAAAAGAAAAAAAAATG
50824692 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.06
Consensus pattern (24 bp):
GAAAAAAAAAGAAAAAAAAATGAT
Found at i:50825323 original size:37 final size:37
Alignment explanation
Indices: 50825282--50825369 Score: 167
Period size: 37 Copynumber: 2.4 Consensus size: 37
50825272 AACATAGACA
50825282 TGTATGTTCGGCCACATGAATAAATACATAAGTTATG
1 TGTATGTTCGGCCACATGAATAAATACATAAGTTATG
*
50825319 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCACATGAATAAATACATAAGTTATG
50825356 TGTATGTTCGGCCA
1 TGTATGTTCGGCCA
50825370 TAGGTAGCCT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.33
Consensus pattern (37 bp):
TGTATGTTCGGCCACATGAATAAATACATAAGTTATG
Found at i:50826106 original size:79 final size:82
Alignment explanation
Indices: 50825969--50826151 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 82
50825959 TCAAATGATG
* *
50825969 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
50826033 TGTGCGAGTTACTA-AT
66 TGTGCGAGTTACTATAA
* * * **
50826049 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATC-CGAAGGCAT
50826111 TTGTGCGAGTTACTATAA
65 TTGTGCGAGTTACTATAA
*
50826129 T-CGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
50826152 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 2 0.02
79 57 0.63
80 31 0.34
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:50826160 original size:40 final size:40
Alignment explanation
Indices: 50825969--50826153 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
50825959 TCAAATGATG
* * * *
50825969 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
50826009 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50826049 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50826088 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50826129 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50826154 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 35 0.28
40 79 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Done.