Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 153 of 343
Found at i:50826175 original size:79 final size:78
Alignment explanation
Indices: 50826006--50826186 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 78
50825996 CTAAGTGACC
* *
50826006 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCAT
**
50826071 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* *
50826085 AAATCCGGGTTAAG-TCTCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGG
1 ATATCC-GGTTAAGATC-CGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAG-CCCGAAGG
*
50826148 CATTTGAACGAG-TAGCT
62 CATTGGAACGAGTTA-CT
50826165 ATATCCGGTTAA-ATTCCGAAGG
1 ATATCCGGTTAAGA-TCCGAAGG
50826187 TACGTGATTC
Statistics
Matches: 87, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
78 2 0.02
79 55 0.63
80 30 0.34
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (78 bp):
ATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:50832739 original size:25 final size:23
Alignment explanation
Indices: 50832705--50832750 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
50832695 TAAAGAAATG
50832705 GAAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAAGA-AAA-AAAATGAT
*
50832730 GAAAAGAAAAGAAAAAAAATG
1 GAAAAAAAAAGAAAAAAAATG
50832751 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.07
Consensus pattern (23 bp):
GAAAAAAAAAGAAAAAAAATGAT
Found at i:50833380 original size:37 final size:37
Alignment explanation
Indices: 50833339--50833426 Score: 176
Period size: 37 Copynumber: 2.4 Consensus size: 37
50833329 AACATAGACA
50833339 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
50833376 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
50833413 TGTATGTTCGGCCA
1 TGTATGTTCGGCCA
50833427 TAGGTAGCCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (37 bp):
TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
Found at i:50834159 original size:79 final size:81
Alignment explanation
Indices: 50834023--50834205 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
50834013 TCGAATGATG
* *
50834023 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
50834087 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
50834102 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
50834164 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
50834182 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
50834206 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:50834221 original size:40 final size:40
Alignment explanation
Indices: 50834024--50834207 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
50834014 CGAATGATGT
* * * *
50834024 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
50834064 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
50834104 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
50834142 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
50834183 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50834208 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:50834229 original size:79 final size:79
Alignment explanation
Indices: 50834076--50834240 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
50834066 GGACTAAGAT
* **
50834076 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
50834141 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
50834155 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
50834218 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
50834234 CCGAAGG
1 CCGAAGG
50834241 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:50835622 original size:12 final size:12
Alignment explanation
Indices: 50835607--50835634 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
50835597 AAAAAGGCTT
50835607 GGGTAGACACAC
1 GGGTAGACACAC
50835619 GGGTAGACACAC
1 GGGTAGACACAC
50835631 GGGT
1 GGGT
50835635 GTGTGTCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.21, G:0.39, T:0.11
Consensus pattern (12 bp):
GGGTAGACACAC
Found at i:50839495 original size:20 final size:20
Alignment explanation
Indices: 50839457--50839495 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
50839447 TATGTGGGCC
50839457 ATATGGGCGTGTAGGCCCACA
1 ATATGGGCGTG-AGGCCCACA
50839478 ATATGGGCCGTG-GGCCCA
1 ATATGGG-CGTGAGGCCCA
50839496 TTTTCACTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 7 0.41
22 4 0.24
ACGTcount: A:0.21, C:0.26, G:0.36, T:0.18
Consensus pattern (20 bp):
ATATGGGCGTGAGGCCCACA
Found at i:50840659 original size:40 final size:40
Alignment explanation
Indices: 50840597--50840714 Score: 200
Period size: 40 Copynumber: 2.9 Consensus size: 40
50840587 TTACATAGCT
* *
50840597 GAAGCTATCTCGATCTCGTACACTAAGTGCCACATATAACC
1 GAAGCTATGTCGA-ATCGTACACTAAGTGCCACATATAACC
50840638 GAAGCTATGTCGAATCGTACACTAAGTGCCACATATAACC
1 GAAGCTATGTCGAATCGTACACTAAGTGCCACATATAACC
*
50840678 GAAGCTATGTCGAATCGTACACTAAGTGCCATATATA
1 GAAGCTATGTCGAATCGTACACTAAGTGCCACATATA
50840715 TATAGCCAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
40 62 0.84
41 12 0.16
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (40 bp):
GAAGCTATGTCGAATCGTACACTAAGTGCCACATATAACC
Found at i:50843703 original size:27 final size:27
Alignment explanation
Indices: 50843672--50843849 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50843662 TAAATTGTAC
50843672 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50843699 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50843725 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50843753 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50843781 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50843808 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50843835 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50843850 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50843786 original size:82 final size:81
Alignment explanation
Indices: 50843673--50843828 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50843663 AAATTGTACA
* *
50843673 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50843737 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50843754 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50843819 TGCGAGTTGA
65 TGCGAATTGA
50843829 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50843840 original size:82 final size:81
Alignment explanation
Indices: 50843669--50843849 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50843659 GATTAAATTG
* *
50843669 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50843734 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50843750 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50843814 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50843832 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50843850 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50854115 original size:27 final size:27
Alignment explanation
Indices: 50854084--50854261 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50854074 TAAATTGTAC
50854084 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50854111 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50854137 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50854165 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50854193 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50854220 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50854247 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50854262 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50854198 original size:82 final size:81
Alignment explanation
Indices: 50854085--50854240 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50854075 AAATTGTACA
* *
50854085 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50854149 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50854166 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50854231 TGCGAGTTGA
65 TGCGAATTGA
50854241 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50854252 original size:82 final size:81
Alignment explanation
Indices: 50854081--50854261 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50854071 GATTAAATTG
* *
50854081 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50854146 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50854162 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50854226 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50854244 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50854262 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50855875 original size:22 final size:24
Alignment explanation
Indices: 50855847--50855890 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
50855837 TATGGCAAGA
50855847 AATTAAG-TAGAAAAG-AAGTATG
1 AATTAAGTTAGAAAAGTAAGTATG
50855869 AATTAAGTTAGAAAAGTAAGTA
1 AATTAAGTTAGAAAAGTAAGTA
50855891 AACTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (24 bp):
AATTAAGTTAGAAAAGTAAGTATG
Found at i:50859006 original size:10 final size:10
Alignment explanation
Indices: 50858991--50859029 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
50858981 TGCTTTTGTA
50858991 CATGATATGC
1 CATGATATGC
50859001 CATGATATGC
1 CATGATATGC
50859011 ACATGATATGC
1 -CATGATATGC
50859022 CATGATAT
1 CATGATAT
50859030 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:50859015 original size:21 final size:21
Alignment explanation
Indices: 50858990--50859029 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
50858980 CTGCTTTTGT
50858990 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
50859011 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
50859030 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:50859112 original size:25 final size:25
Alignment explanation
Indices: 50859074--50859143 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
50859064 AGGAAGTGCT
* *
50859074 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
50859099 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
50859124 AAAAGGGCTTTGCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
50859144 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:50859156 original size:24 final size:24
Alignment explanation
Indices: 50859099--50859170 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
50859089 CAGTTTACCG
*
50859099 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCTCCAG-TTATC
*
50859123 AAAA-AGGGCTTTGCTCCAGTTATT
1 AAAAGA-GGCTTTGCTCCAGTTATC
**
50859147 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTG-CTCCAGTTAT
50859171 AAGATAAAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 17 0.43
25 23 0.57
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGAGGCTTTGCTCCAGTTATC
Found at i:50859389 original size:31 final size:30
Alignment explanation
Indices: 50859357--50859415 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
50859347 GCCATACTGA
*
50859357 TTACAATAAAGGCTTCGGCCCAGTGATATGAT
1 TTACAA-AAAGGCTTCGACCCAGT-ATATGAT
**
50859389 TTATGAAAAGGCTTCGACCCAGTATAT
1 TTACAAAAAGGCTTCGACCCAGTATAT
50859416 ATTGAAACTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 4 0.17
31 16 0.67
32 4 0.17
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (30 bp):
TTACAAAAAGGCTTCGACCCAGTATATGAT
Found at i:50867230 original size:50 final size:49
Alignment explanation
Indices: 50867097--50867293 Score: 250
Period size: 50 Copynumber: 4.0 Consensus size: 49
50867087 TCTATTGTGA
* * * *
50867097 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * **
50867147 CGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
50867197 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
50867247 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
50867294 CTTCGGCTAC
Statistics
Matches: 126, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
49 42 0.33
50 45 0.36
51 39 0.31
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:50869482 original size:21 final size:21
Alignment explanation
Indices: 50869457--50869506 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
50869447 TGCTTTTGTA
50869457 CATGATATGCACATGATATGC
1 CATGATATGCACATGATATGC
50869478 CATGATATGCACATGATATGC
1 CATGATATGCACATGATATGC
50869499 CATGATAT
1 CATGATAT
50869507 ATTCACATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (21 bp):
CATGATATGCACATGATATGC
Found at i:50869483 original size:10 final size:11
Alignment explanation
Indices: 50869456--50869506 Score: 88
Period size: 11 Copynumber: 4.8 Consensus size: 11
50869446 CTGCTTTTGT
50869456 ACATGATATGC
1 ACATGATATGC
50869467 ACATGATATGC
1 ACATGATATGC
50869478 -CATGATATGC
1 ACATGATATGC
50869488 ACATGATATGC
1 ACATGATATGC
50869499 -CATGATAT
1 ACATGATAT
50869507 ATTCACATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.46
11 21 0.54
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (11 bp):
ACATGATATGC
Found at i:50869622 original size:24 final size:25
Alignment explanation
Indices: 50869551--50869617 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
50869541 AGGAGGTGCT
* *
50869551 AAAAGGGCTATGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
50869576 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
50869601 AAAAGGGCTTTACCCCA
1 AAAAGGGCTTTGCCCCA
50869618 ATTATTAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:50869627 original size:24 final size:25
Alignment explanation
Indices: 50869551--50869627 Score: 84
Period size: 25 Copynumber: 3.1 Consensus size: 25
50869541 AGGAGGTGCT
* * * *
50869551 AAAAGGGCTATGCCCCAGTTTACCA
1 AAAAGGGCTTTACCCCAGATTATCA
* *
50869576 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTACCCCAGATTATCA
*
50869601 AAAAGGGCTTTACCCCA-ATTATTA
1 AAAAGGGCTTTACCCCAGATTATCA
50869625 AAA
1 AAA
50869628 GAGGCAAGGC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 8 0.17
25 39 0.83
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTACCCCAGATTATCA
Found at i:50870838 original size:7 final size:8
Alignment explanation
Indices: 50870821--50870846 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
50870811 GTTCACACAC
50870821 AAAAATAA
1 AAAAATAA
50870829 AAAAATAA
1 AAAAATAA
50870837 AAAAATAA
1 AAAAATAA
50870845 AA
1 AA
50870847 TTCGGAGCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:50888649 original size:52 final size:51
Alignment explanation
Indices: 50888536--50888713 Score: 236
Period size: 51 Copynumber: 3.5 Consensus size: 51
50888526 CGGATACCCG
* * * * *
50888536 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAACCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCTTCTTCACAAA
50888587 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAA
** *
50888639 GTGGTATTCACATAGTACCACACTTGTGACC-AAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
*
50888688 GTGGCCTTCACATAGAACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
50888714 AGTCACTAGT
Statistics
Matches: 114, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
49 32 0.28
51 41 0.36
52 41 0.36
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
Found at i:50890779 original size:27 final size:27
Alignment explanation
Indices: 50890749--50890816 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
50890739 TACTGAGGGG
*
50890749 ATTGGCGATTTTATCACGTTATATATT
1 ATTGGCGATTTTATCACATTATATATT
* * * *
50890776 ATTGGTGATATTATCACATTATTTGTT
1 ATTGGCGATTTTATCACATTATATATT
*
50890803 ATTTGGCAATTTTA
1 A-TTGGCGATTTTA
50890817 CTGCATTGTT
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
27 23 0.72
28 9 0.28
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.50
Consensus pattern (27 bp):
ATTGGCGATTTTATCACATTATATATT
Found at i:50892752 original size:26 final size:27
Alignment explanation
Indices: 50892723--50892781 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
50892713 ATACATCTCA
50892723 TAGGGG-ATAACAGTCATTTTATCAAC
1 TAGGGGCATAACAGTCATTTTATCAAC
*
50892749 TAGGGGCATAATAGTCATTTTATCAAC
1 TAGGGGCATAACAGTCATTTTATCAAC
50892776 TAGGGG
1 TAGGGG
50892782 GTCCAGGTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 6 0.19
27 25 0.81
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (27 bp):
TAGGGGCATAACAGTCATTTTATCAAC
Found at i:50894305 original size:28 final size:26
Alignment explanation
Indices: 50894232--50894305 Score: 62
Period size: 28 Copynumber: 2.7 Consensus size: 26
50894222 AGTAACATAA
* *
50894232 CAAAGCTACTAATAACAATAAACGTGG
1 CAAAGCCACTAAT-ACAGTAAACGTGG
*
50894259 CAAAGCCACCAGAGT--AGTAATTACGTGG
1 CAAAGCCACTA-A-TACAGTAA--ACGTGG
50894287 CAAAGCCACTAATACAGTA
1 CAAAGCCACTAATACAGTA
50894306 CTTCCTCCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
26 5 0.14
27 10 0.27
28 21 0.57
29 1 0.03
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.18
Consensus pattern (26 bp):
CAAAGCCACTAATACAGTAAACGTGG
Found at i:50902752 original size:28 final size:28
Alignment explanation
Indices: 50902712--50902785 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 28
50902702 ATACTTTTGG
*
50902712 CCCACTAGGCCCAATCTCAT-TCATATGA
1 CCCACTAGGCCCAATCACATCT-ATATGA
* *
50902740 CCCATTAGGCCCAAATCACATCTATATGG
1 CCCACTAGGCCC-AATCACATCTATATGA
50902769 CCCACTAGGCCCAATCA
1 CCCACTAGGCCCAATCA
50902786 ATTTTATAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
28 16 0.40
29 23 0.57
30 1 0.03
ACGTcount: A:0.30, C:0.36, G:0.12, T:0.22
Consensus pattern (28 bp):
CCCACTAGGCCCAATCACATCTATATGA
Found at i:50906198 original size:40 final size:40
Alignment explanation
Indices: 50906104--50906328 Score: 231
Period size: 40 Copynumber: 5.6 Consensus size: 40
50906094 TATTCGAATG
*
50906104 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * * *
50906145 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * * *
50906185 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
50906225 ATATCCGGGATAA-AACCTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAGTGACT
* *
50906265 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
50906305 ACATCCAGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
50906329 CTTGCGCAAG
Statistics
Matches: 152, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.02
40 119 0.78
41 29 0.19
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:50906318 original size:120 final size:121
Alignment explanation
Indices: 50906104--50906328 Score: 283
Period size: 120 Copynumber: 1.9 Consensus size: 121
50906094 TATTCGAATG
* ** * *
50906104 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGATAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
50906169 ATTCGTGCGAGTTACTATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTGACCACATCCAGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
* * *
50906225 ATATCCGGGATAAAACCTGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGATAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
50906288 CATTTATGCTAGTGACCACATCCAGGCTAAGACCCGAAGGC
65 CATTCATGCGAGTGACCACATCCAGGCTAAGACCCAAAGGC
50906329 CTTGCGCAAG
Statistics
Matches: 87, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
119 1 0.01
120 57 0.66
121 29 0.33
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGGGATAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTGACCACATCCAGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
Found at i:50906327 original size:80 final size:79
Alignment explanation
Indices: 50906104--50906328 Score: 261
Period size: 80 Copynumber: 2.8 Consensus size: 79
50906094 TATTCGAATG
* * *
50906104 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGG-CTAAGACCCGAAGGC
**
50906169 ATTCGTGCGAGTTACT
64 ATTCGTGCGAGCGACT
* * * * * * *
50906185 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCCGGGATAAAACCTGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGACCCGAAGGCA
* *
50906250 TTTGTGCTAGCGACT
65 TTCGTGCGAGCGACT
* * *
50906265 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCAGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGACCCGAAGGC
50906329 CTTGCGCAAG
Statistics
Matches: 118, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
80 85 0.72
81 33 0.28
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGCTAAGACCCGAAGGCAT
TCGTGCGAGCGACT
Found at i:50911997 original size:15 final size:17
Alignment explanation
Indices: 50911979--50912011 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
50911969 ATTTTTTATA
50911979 TTTATTT-T-TAAATTT
1 TTTATTTATATAAATTT
50911994 TTTATTTATATAAATTT
1 TTTATTTATATAAATTT
50912011 T
1 T
50912012 GAATTTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTATTTATATAAATTT
Found at i:50912505 original size:7 final size:7
Alignment explanation
Indices: 50912493--50912524 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
50912483 TAAAGAATTT
50912493 TTTTATC
1 TTTTATC
50912500 TTTTATC
1 TTTTATC
50912507 TTTTATC
1 TTTTATC
50912514 TTTTAT-
1 TTTTATC
50912520 TTTTA
1 TTTTA
50912525 GATATGTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTTATC
Found at i:50913085 original size:21 final size:22
Alignment explanation
Indices: 50913031--50913094 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
50913021 GACTTTTGAT
* *
50913031 CCAATAATTATAATT-TATCAAC
1 CCAATAAATATTATTCTATC-AC
**
50913053 CCAATATTTATT-TTCTATCAC
1 CCAATAAATATTATTCTATCAC
*
50913074 CCAATAAATATTATTCAATCA
1 CCAATAAATATTATTCTATCA
50913095 ATTAATTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 14 0.40
22 21 0.60
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (22 bp):
CCAATAAATATTATTCTATCAC
Found at i:50914500 original size:32 final size:32
Alignment explanation
Indices: 50914464--50914527 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
50914454 TTGTTAAGTA
50914464 AATTTGATGAATTTAACAATTAGGGATTAAAT
1 AATTTGATGAATTTAACAATTAGGGATTAAAT
50914496 AATTTGATGAATTTAACAATTAGGGATTAAAT
1 AATTTGATGAATTTAACAATTAGGGATTAAAT
50914528 TTGAGGTATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.44, C:0.03, G:0.16, T:0.38
Consensus pattern (32 bp):
AATTTGATGAATTTAACAATTAGGGATTAAAT
Found at i:50920905 original size:21 final size:20
Alignment explanation
Indices: 50920877--50920916 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
50920867 CTCTTAAAAT
50920877 AGGGAACACGCCCGTGTGGA
1 AGGGAACACGCCCGTGTGGA
*
50920897 AGGGCAACACGCTCGTGTGG
1 AGGG-AACACGCCCGTGTGG
50920917 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.23, C:0.25, G:0.40, T:0.12
Consensus pattern (20 bp):
AGGGAACACGCCCGTGTGGA
Found at i:50922286 original size:48 final size:50
Alignment explanation
Indices: 50922173--50922292 Score: 138
Period size: 48 Copynumber: 2.4 Consensus size: 50
50922163 CCGACGTCAT
** * * *
50922173 GTCCCAGACATGGTCTTACACTAACTCTCACATATCCGTGTCGATGCCAT
1 GTCCCAGACATGGTCTTACACTAAAACTCACATATACGTCTCGATGCCAG
* * *
50922223 GTTCGAGACATGGTCTTACACTAAAAC-CTC-TATACGTACT-GATGCCAG
1 GTCCCAGACATGGTCTTACACTAAAACTCACATATACGT-CTCGATGCCAG
50922271 GTCCCAGACATGGTCTTACACT
1 GTCCCAGACATGGTCTTACACT
50922293 GACACATCTC
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
48 33 0.56
49 3 0.05
50 23 0.39
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (50 bp):
GTCCCAGACATGGTCTTACACTAAAACTCACATATACGTCTCGATGCCAG
Found at i:50922358 original size:46 final size:46
Alignment explanation
Indices: 50922271--50922476 Score: 188
Period size: 46 Copynumber: 4.5 Consensus size: 46
50922261 CTGATGCCAG
* * *
50922271 GTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA-GCCGATGCAT
1 GTCCCAGACAT-GTCTTACACTGGCTCTCATATCG-AGGCCGATGCAT
50922316 GTCCCAGACATGTCTTACACTGGCT-TACATATCGAGGCCGATGCAT
1 GTCCCAGACATGTCTTACACTGGCTCT-CATATCGAGGCCGATGCAT
* * * * **
50922362 GTGCCAGACATGTCTTACACTAGCTCTCATCTCAATACCGATGCCAT
1 GTCCCAGACATGTCTTACACTGGCTCTCATATCGAGGCCGATG-CAT
* * * * *
50922409 GTCCTAGACATGGTCTTACACTGGCTCTCAGAAT-GTGGCTGACGCAT
1 GTCCCAGACAT-GTCTTACACTGGCTCTCA-TATCGAGGCCGATGCAT
*
50922456 GTCCCAAACATGTCTTACACT
1 GTCCCAGACATGTCTTACACT
50922477 AGCACACAAA
Statistics
Matches: 131, Mismatches: 22, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
44 10 0.08
45 13 0.10
46 61 0.47
47 25 0.19
48 21 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GTCCCAGACATGTCTTACACTGGCTCTCATATCGAGGCCGATGCAT
Found at i:50922456 original size:94 final size:92
Alignment explanation
Indices: 50922271--50922484 Score: 249
Period size: 94 Copynumber: 2.3 Consensus size: 92
50922261 CTGATGCCAG
*
50922271 GTCCCAGACATGGTCTTACACT-G-ACACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTAC
1 GTCCCAGACAT-GTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTAC
* *
50922334 ACTGGCTTACATATCGAGGCCGATGCAT
65 ACTGGCTTACAAATCGAGGCCGACGCAT
* * * *
50922362 GTGCCAGACATGTCTTACACTAGCTCTCATCTCAATA-CCGATGCCATGTCCTAGACATGGTCTT
1 GTCCCAGACATGTCTTACACTAGCACACATCTC-ATAGCCGATG-CATGTCCCAGACAT-GTCTT
* *
50922426 ACACTGGCTCT-CAGAAT-GTGGCTGACGCAT
63 ACACTGGCT-TACA-AATCGAGGCCGACGCAT
*
50922456 GTCCCAAACATGTCTTACACTAGCACACA
1 GTCCCAGACATGTCTTACACTAGCACACA
50922485 AATAACCTAA
Statistics
Matches: 103, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
90 10 0.10
91 11 0.11
92 13 0.13
93 15 0.15
94 51 0.50
95 3 0.03
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (92 bp):
GTCCCAGACATGTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACA
CTGGCTTACAAATCGAGGCCGACGCAT
Found at i:50931638 original size:13 final size:13
Alignment explanation
Indices: 50931620--50931644 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50931610 AATTGATATT
50931620 TGTGAAAATTTTG
1 TGTGAAAATTTTG
50931633 TGTGAAAATTTT
1 TGTGAAAATTTT
50931645 ATCGTTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TGTGAAAATTTTG
Found at i:50937641 original size:27 final size:27
Alignment explanation
Indices: 50937600--50937679 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
50937590 CTCAGATCGA
*
50937600 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
50937627 TAAAATAACTATTTTGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
50937654 TAAGATGACTATTTTACCCTTATGTG
1 TAAAATGACTATTTTGCCCTTATGTG
50937680 ATGTATGCAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGG
Found at i:50939086 original size:48 final size:48
Alignment explanation
Indices: 50939029--50939253 Score: 333
Period size: 48 Copynumber: 4.7 Consensus size: 48
50939019 AATGTGTGCT
50939029 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* *
50939077 GGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* * *
50939125 AATGTAAGACCATGTTGGGAGCATGGCATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* * * ** *
50939173 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* *
50939221 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGC
50939254 CTCGACATGT
Statistics
Matches: 161, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 161 1.00
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
Found at i:50939187 original size:25 final size:24
Alignment explanation
Indices: 50939063--50939187 Score: 55
Period size: 25 Copynumber: 5.2 Consensus size: 24
50939053 GGCATCGGCA
*
50939063 ATGTTATGAGAGCCGGTGTAAGACC
1 ATGTTATGAGAGCC-ATGTAAGACC
* * * *
50939088 ATGTT-TG-GA-ACATGGCATCGACA
1 ATGTTATGAGAGCCAT-GTA-AGACC
50939111 ATGTTATGAGAGCCAATGTAAGACC
1 ATGTTATGAGAGCC-ATGTAAGACC
* * * * *
50939136 ATG-T-TGGGAG-CATGGCATCGGCA
1 ATGTTATGAGAGCCAT-GTA-AGACC
50939159 ATGTTATGAGAGCCAGTGTAAGACC
1 ATGTTATGAGAGCCA-TGTAAGACC
50939184 ATGT
1 ATGT
50939188 CTGGGACATG
Statistics
Matches: 69, Mismatches: 19, Indels: 24
0.62 0.17 0.21
Matches are distributed among these distances:
21 3 0.04
22 6 0.09
23 20 0.29
24 6 0.09
25 24 0.35
26 7 0.10
27 3 0.04
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (24 bp):
ATGTTATGAGAGCCATGTAAGACC
Found at i:50939197 original size:96 final size:95
Alignment explanation
Indices: 50939031--50939299 Score: 333
Period size: 96 Copynumber: 2.8 Consensus size: 95
50939021 TGTGTGCTAG
* * *
50939031 TGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCCGGTGTAAGACCATGTTTGG
1 TGTAAGACCATG-TTGGGACATGGCATCGGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGG
* **
50939096 AACATGGCATCGACAATGTTATGAGAGCCAA
65 GACATGGCATCGACAATGAGATGAGAGCCAA
50939127 TGTAAGACCATGTTGGGAGCATGGCATCGGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTTGGGA-CATGGCATCGGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGG
* * * *
50939192 GACATGGCATCGGCATTGAGATGAGAGCTAG
65 GACATGGCATCGACAATGAGATGAGAGCCAA
* ** * * * * *
50939223 TGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGACATGTGAGACATTGTAAGACCATGCCTA
1 TGTAAGACCATGT-TGGGACATGGCATCGGCAAT-GTTATGAGAGCCAGTGTAAGACCATGTCTG
50939287 GGACATGGCATCG
64 GGACATGGCATCG
50939300 GTAATTTACC
Statistics
Matches: 152, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
95 6 0.04
96 141 0.93
97 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (95 bp):
TGTAAGACCATGTTGGGACATGGCATCGGCAATGTTATGAGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGACAATGAGATGAGAGCCAA
Found at i:50939275 original size:48 final size:46
Alignment explanation
Indices: 50939029--50939300 Score: 267
Period size: 48 Copynumber: 5.7 Consensus size: 46
50939019 AATGTGTGCT
* * **
50939029 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATGACATGAGAG-C
* * * * **
50939077 GGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATGACATGAGAG-C
* **
50939125 AATGTAAGACCATGT-TGGGAGCATGGCATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGA-CATGGCATCGGC-ATGACATGAGAG-C
*
50939173 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TGACATGAGAGC
* *
50939220 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGAC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-GACATGAGAG-C
* * *
50939269 ATTGTAAGACCATGCCTAGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
50939301 TAATTTACCC
Statistics
Matches: 203, Mismatches: 15, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
47 7 0.03
48 190 0.94
49 6 0.03
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGACATGAGAGC
Found at i:50939294 original size:144 final size:144
Alignment explanation
Indices: 50939029--50939300 Score: 350
Period size: 144 Copynumber: 1.9 Consensus size: 144
50939019 AATGTGTGCT
* ** * *
50939029 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCCGGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGAGATGAGAGCCAGTGTAAGACCATGTCT
** * * *
50939094 GGAACATGGCATCGACAATGTTATGAGAGCCAATGTAAGACCATGTTGGGAGCATGGCATCGGCA
66 GGAACATGGCATCGACAATGACATGAGAGACAATGTAAGACCATGCTAGGAGCATGGCATCGGCA
50939159 ATGTTATGAGAGCC
131 ATGTTATGAGAGCC
* * *
50939173 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGAGATGAGAGCCAGTGTAAGACCATGTCT
* * * * *
50939238 GGGACATGGCATCGGC-CTCGACATGTGAGACATTGTAAGACCATGCCTAGGA-CATGGCATCGG
66 GGAACATGGCATCGACAAT-GACATGAGAGACAATGTAAGACCATG-CTAGGAGCATGGCATCGG
50939301 TAATTTACCC
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
143 1 0.01
144 103 0.95
145 4 0.04
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (144 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGAGATGAGAGCCAGTGTAAGACCATGTCT
GGAACATGGCATCGACAATGACATGAGAGACAATGTAAGACCATGCTAGGAGCATGGCATCGGCA
ATGTTATGAGAGCC
Found at i:50944937 original size:39 final size:40
Alignment explanation
Indices: 50944823--50945007 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
50944813 GCTACTCGTT
*
50944823 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
50944863 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
50944903 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTGGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
50944942 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
50944983 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50945008 CATCATTCGA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:50944991 original size:79 final size:81
Alignment explanation
Indices: 50944823--50945007 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
50944813 GCTACTCGTT
* *
50944823 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
50944887 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* * ** *
50944904 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTGGCACAAATGCCTTC-GGATCTTAGTCTG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
50944966 GATATGGTCACTTAGCA-
65 GATATAGTAAC-TAGCAC
50944983 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
50945008 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 25 0.28
81 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCAC
Found at i:50952935 original size:40 final size:40
Alignment explanation
Indices: 50952898--50953081 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
50952888 GCTACTCGTT
*
50952898 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
50952938 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
50952978 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* ** * * *
50953017 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
50953058 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
50953082 ACATCATTCA
Statistics
Matches: 122, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 75 0.61
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:50953066 original size:79 final size:81
Alignment explanation
Indices: 50952898--50953082 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
50952888 GCTACTCGTT
* *
50952898 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
50952962 GATTTAGTAACTCGCAC
65 AATATAGTAACTAGCAC
* **
50952979 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
50953041 AATATGGTCACTTAGCA-
65 AATATAGTAAC-TAGCAC
50953058 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
50953083 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 25 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
ATATAGTAACTAGCAC
Found at i:50962823 original size:21 final size:21
Alignment explanation
Indices: 50962797--50962844 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
50962787 TCAACTTAGA
* *
50962797 GCGGAGGCAGCAGCGAGGTAG
1 GCGGAGGCAGCAACGAGGGAG
50962818 GCGGAGGCAGCAACGAGGGAG
1 GCGGAGGCAGCAACGAGGGAG
50962839 GCGGAG
1 GCGGAG
50962845 CAGAACAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.54, T:0.02
Consensus pattern (21 bp):
GCGGAGGCAGCAACGAGGGAG
Found at i:50963185 original size:43 final size:43
Alignment explanation
Indices: 50963138--50963460 Score: 355
Period size: 43 Copynumber: 7.5 Consensus size: 43
50963128 ATTGGGCAAA
* * * *
50963138 TTAGCGGCGTTTTTTAAAAAAGCTCCGCTAAAAGTACAT-GTCT
1 TTAGCGGCATTTTTTATAAAAGCGCCGCTAAAAGT-CCTGGTCT
* *
50963181 TTAGCGACATTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
1 TTAGCGGCATTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCT
* * * * ** *
50963224 CTAGCGGCGTTTTTTA-AAAAGGCGCCACTAAAAGTACAAGTAT
1 TTAGCGGCATTTTTTATAAAA-GCGCCGCTAAAAGTCCTGGTCT
* * * *
50963267 TTAGCGGCGTTTTTTTATAAAAGTGCCGCTAAAGGGCCTGGTCT
1 TTAGCGGC-ATTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCT
* * *
50963311 CTAGCGGCATTTTTTATAAAATCGCCGCTAAAGGTCCTGGTCT
1 TTAGCGGCATTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCT
* * * *
50963354 CTAGCAG-AGTTTTTTATAGAAGCGCCGCTAAAGGTCCTGGTCT
1 TTAGCGGCA-TTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCT
*
50963397 TTAGCGGCATTTTTTATAAAAGCGCCGCTAAATGTCCTGGTCT
1 TTAGCGGCATTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCT
*
50963440 TTAGCGGCATTTTTTCTAAAA
1 TTAGCGGCATTTTTTATAAAA
50963461 AACGTCGCTA
Statistics
Matches: 236, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
42 7 0.03
43 196 0.83
44 29 0.12
45 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (43 bp):
TTAGCGGCATTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCT
Found at i:50966398 original size:43 final size:42
Alignment explanation
Indices: 50966300--50966420 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
50966290 TAGGGTTGCT
* *
50966300 GAGATTACGTTTAAGACCATATCTGGGATATGGCATCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
* *
50966342 GAGGCTT-CGTGTAAGACCAT-TCCTGGGCTATTGGCATCGATAC
1 GA-GATTACGTGTAAGACCATAT-CTGGGATA-TGGCATCGATAC
* *
50966385 GAGATTACATGTAAGACCATATCTAGGATATGGCAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCAT
50966421 TGGTACAATA
Statistics
Matches: 66, Mismatches: 8, Indels: 10
0.79 0.10 0.12
Matches are distributed among these distances:
41 1 0.02
42 30 0.45
43 34 0.52
44 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:50968532 original size:27 final size:27
Alignment explanation
Indices: 50968494--50968693 Score: 256
Period size: 27 Copynumber: 7.4 Consensus size: 27
50968484 TGGATAAATT
*
50968494 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
50968521 GTAGAATTACCGAAATACACCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
50968548 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
50968575 GTAGACTTACCAAAATATCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
50968602 ATAGAATTACCGAAATACACTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
50968629 GTAGAAATACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
50968656 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
50968683 GTAAAATTACC
1 GTAGAATTACC
50968694 ATTTTATCCC
Statistics
Matches: 146, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:50969381 original size:27 final size:26
Alignment explanation
Indices: 50969337--50969388 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
50969327 TTCGCTGCAA
*
50969337 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
50969364 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
50969389 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:50969426 original size:67 final size:68
Alignment explanation
Indices: 50969318--50969475 Score: 210
Period size: 71 Copynumber: 2.3 Consensus size: 68
50969308 GAGGAAGCGT
* * * *
50969318 TCTGGCAGCTTCGCTGCAATCTGGTGGCCTCGCCAC-ATATATCTGTTCTGGTGACTTCGTCACA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACAATATATCTGTTCTGGTGACCTAGCCACA
50969382 ATA
66 ATA
* * * *
50969385 TCTGGCAGCCTCGCTGCATTTTGGTGGCTTCGCCACATATATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAC--A-ATATATCTGTTCTGGTGACCTAGCC
50969450 ACAATA
63 ACAATA
50969456 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
50969476 TTCTGTGCTG
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
67 32 0.41
71 46 0.59
ACGTcount: A:0.18, C:0.28, G:0.23, T:0.31
Consensus pattern (68 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACAATATATCTGTTCTGGTGACCTAGCCACA
ATA
Found at i:50973784 original size:17 final size:17
Alignment explanation
Indices: 50973743--50973785 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
50973733 AGCAAAAGTT
*
50973743 AGATTCTAATAGCTAGA
1 AGATTCAAATAGCTAGA
*
50973760 AGAATCAAATAGCTATGA
1 AGATTCAAATAGCTA-GA
50973778 A-ATTCAAA
1 AGATTCAAA
50973786 ACTTAAGGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 19 0.86
18 3 0.14
ACGTcount: A:0.49, C:0.12, G:0.14, T:0.26
Consensus pattern (17 bp):
AGATTCAAATAGCTAGA
Found at i:50973932 original size:18 final size:18
Alignment explanation
Indices: 50973895--50973933 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
50973885 TTGGAAATCA
*
50973895 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
50973913 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
50973931 AAA
1 AAA
50973934 ATCATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:50990033 original size:43 final size:42
Alignment explanation
Indices: 50989986--50990145 Score: 132
Period size: 43 Copynumber: 3.8 Consensus size: 42
50989976 ATATATAATG
* ***
50989986 CTGTCCCAGACGTGGTCTTACATGTAATCAAACATCGATGCCA
1 CTGTCCCAAACGTGGTCTTACACAAAATCAAA-ATCGATGCCA
* *
50990029 CTGTCCCAGACAG-GGTCTTACACAAAATCAGATAT-GATGCCGA
1 CTGTCCCAAAC-GTGGTCTTACACAAAATCA-AAATCGATGCC-A
*
50990072 -TGTCCCAAACATGGTCTTACACGTAAAA-CAAAAGTCGATGCCA
1 CTGTCCCAAACGTGGTCTTACAC--AAAATCAAAA-TCGATGCCA
* * *
50990115 ATGTCCCAAACTTGGT-TTACATAAAATCAAA
1 CTGTCCCAAACGTGGTCTTACACAAAATCAAA
50990146 TAATGGAATC
Statistics
Matches: 98, Mismatches: 9, Indels: 21
0.77 0.07 0.16
Matches are distributed among these distances:
41 4 0.04
42 31 0.32
43 37 0.38
44 26 0.27
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (42 bp):
CTGTCCCAAACGTGGTCTTACACAAAATCAAAATCGATGCCA
Found at i:50990135 original size:85 final size:85
Alignment explanation
Indices: 50989987--50990143 Score: 201
Period size: 85 Copynumber: 1.8 Consensus size: 85
50989977 TATATAATGC
* * * * * *
50989987 TGTCCCAGACGTGGTCTTACATGTAATCAAACATCGATGCCACTGTCCCAGACAGGGTCTTACAC
1 TGTCCCAAACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAAACAGGGTCTTACAC
50990052 AAAATCAGATATGATGCCGA
66 AAAATCAGATATGATGCCGA
**
50990072 TGTCCCAAACATGGTCTTACACGTAAAACAAA-AGTCGATGCCAATGTCCCAAACTTGGT-TTAC
1 TGTCCCAAACATGGTCTTACACGT-AAACAAACA-TCGATGCCAATGTCCCAAACAGGGTCTTAC
*
50990135 ATAAAATCA
64 ACAAAATCA
50990144 AATAATGGAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
85 34 0.56
86 27 0.44
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (85 bp):
TGTCCCAAACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAAACAGGGTCTTACAC
AAAATCAGATATGATGCCGA
Found at i:50993192 original size:27 final size:28
Alignment explanation
Indices: 50993162--50993265 Score: 126
Period size: 27 Copynumber: 3.8 Consensus size: 28
50993152 CTGCCAGAAT
* *
50993162 AGATA-TTGTGACAGAGTCACCAAATAC
1 AGATATTTGTGGCAGAGCCACCAAATAC
* *
50993189 AGATA-TTGTGGCAGAGCCGCTAGAA-AC
1 AGATATTTGTGGCAGAGCCACCA-AATAC
*
50993216 AGATATTTGTGGCAGAGCCACCATAT-C
1 AGATATTTGTGGCAGAGCCACCAAATAC
50993243 AGATATTTGTGGCAGAGCCACCA
1 AGATATTTGTGGCAGAGCCACCA
50993266 GAACGCTTCC
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
27 50 0.75
28 17 0.25
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (28 bp):
AGATATTTGTGGCAGAGCCACCAAATAC
Found at i:50998922 original size:25 final size:25
Alignment explanation
Indices: 50998885--50998987 Score: 102
Period size: 25 Copynumber: 4.1 Consensus size: 25
50998875 TCATTAGTGT
* * *
50998885 TACCAATTTATAGCTCGTGAGAGCA
1 TACCGATTCATAGCTCGTAAGAGCA
* *
50998910 TACCGATTCATAGCTCATGAGAGCA
1 TACCGATTCATAGCTCGTAAGAGCA
* *
50998935 TACCGA-TCTTCAGCTC-AAATGAGCA
1 TACCGATTCAT-AGCTCGTAA-GAGCA
*
50998960 TACCGATTCATAGCTTGTAAGAGCA
1 TACCGATTCATAGCTCGTAAGAGCA
50998985 TAC
1 TAC
50998988 ATGTACATAA
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
24 4 0.06
25 56 0.86
26 5 0.08
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.26
Consensus pattern (25 bp):
TACCGATTCATAGCTCGTAAGAGCA
Found at i:51002017 original size:27 final size:26
Alignment explanation
Indices: 51001969--51002028 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
51001959 GCGAGGCTGC
*
51001969 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
51001996 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
51002022 CAGATAT
1 CAGATAT
51002029 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:51002041 original size:33 final size:32
Alignment explanation
Indices: 51001990--51002053 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
51001980 ACGAAGTCAC
*
51001990 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAGGCCACCAGAA
* *
51002022 CAGATATATATATATGTGGCGAGGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAGGCCACCAGA
51002054 TTGCAGCGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAGGCCACCAGAA
Found at i:51017750 original size:181 final size:180
Alignment explanation
Indices: 51017447--51017805 Score: 666
Period size: 181 Copynumber: 2.0 Consensus size: 180
51017437 GGCACAAGGC
51017447 CTAGCCACATGGCTGTGTGACCCCTATATCAAAATTTTTGTAAGTTTTCCTAGACTTTGCAAATA
1 CTAGCCACATGGCTGTGTGACCCCTATATCAAAATTTTTGTAAGTTTTCCTAGACTTTGCAAATA
*
51017512 ATTTTAATTTAGTCCCAAATTATTTCTGAGGTGTTTCTTGGGCCCCGAGGGCTCAATATAGGGAT
66 ATTTTAATTTAGTACCAAATTATTTCTGAGGTGTTTCTTGGGCCCCGAGGGCTCAATATAGGGAT
*
51017577 GATGTGTGTATGTATGAATGATTTATGTTATGTTTATGATGTTGAATGTG
131 GATGTGTGTATGTATGAATGATTTATATTATGTTTATGATGTTGAATGTG
*
51017627 CTAGCCACATGGCTGTGTGACCCCTGTATCAAAATTTTTGTAAGTTTTTCCTAGACTTTGCAAAT
1 CTAGCCACATGGCTGTGTGACCCCTATATCAAAATTTTTGTAAG-TTTTCCTAGACTTTGCAAAT
51017692 AATTTTAATTTAGTACCAAA-TAGTTTCTGAGGTGTTTCTTGGGCCCCGAGGGCTCAATATAGGG
65 AATTTTAATTTAGTACCAAATTA-TTTCTGAGGTGTTTCTTGGGCCCCGAGGGCTCAATATAGGG
51017756 ATGATGTGTGTATGTATGAATGATTTATATTATGTTTATGATGTTGAATG
129 ATGATGTGTGTATGTATGAATGATTTATATTATGTTTATGATGTTGAATG
51017806 AAATTAAGTT
Statistics
Matches: 174, Mismatches: 3, Indels: 3
0.97 0.02 0.02
Matches are distributed among these distances:
180 45 0.26
181 129 0.74
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (180 bp):
CTAGCCACATGGCTGTGTGACCCCTATATCAAAATTTTTGTAAGTTTTCCTAGACTTTGCAAATA
ATTTTAATTTAGTACCAAATTATTTCTGAGGTGTTTCTTGGGCCCCGAGGGCTCAATATAGGGAT
GATGTGTGTATGTATGAATGATTTATATTATGTTTATGATGTTGAATGTG
Found at i:51020195 original size:27 final size:28
Alignment explanation
Indices: 51020165--51020224 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
51020155 TAAGGCGATC
51020165 CTTTCATAAGT-CACCACAAAGGC-TTTT
1 CTTTCAT-AGTGCACCACAAAGGCATTTT
* *
51020192 CTTTCATATTGCGCCACAAAGGCATTTT
1 CTTTCATAGTGCACCACAAAGGCATTTT
51020220 CTTTC
1 CTTTC
51020225 CTGGCATGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.37
Consensus pattern (28 bp):
CTTTCATAGTGCACCACAAAGGCATTTT
Found at i:51022152 original size:39 final size:39
Alignment explanation
Indices: 51022092--51022220 Score: 177
Period size: 39 Copynumber: 3.3 Consensus size: 39
51022082 CTTTAACCCA
* ** * * *
51022092 GATATTTTTCCAGCACGTAGCCTGTGGACCTCAAGTCCG
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTTCG
* *
51022131 GATATATTTCCAGCATATAGCCTACGGACCTCATGTTCA
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTTCG
*
51022170 GATATATTTCCAACATATAGCCTGCGGACCTCATGTTCG
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTTCG
51022209 GATATATTTCCA
1 GATATATTTCCA
51022221 ATCTCATATA
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (39 bp):
GATATATTTCCAGCATATAGCCTGCGGACCTCATGTTCG
Found at i:51025652 original size:23 final size:22
Alignment explanation
Indices: 51025614--51025668 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
51025604 AGTTAGAAAT
51025614 AAAG-AAATGGAAAAAA-AAAGAG
1 AAAGAAAAT-GAAAAAACAAA-AG
51025636 AAAGAAAATGAAGAAAACAAAAG
1 AAAGAAAATGAA-AAAACAAAAG
*
51025659 AAAAAAAATG
1 AAAGAAAATG
51025669 TGTCCATCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 7 0.24
23 19 0.66
24 3 0.10
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (22 bp):
AAAGAAAATGAAAAAACAAAAG
Found at i:51025657 original size:25 final size:23
Alignment explanation
Indices: 51025623--51025668 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
51025613 TAAAGAAATG
51025623 GAAAAAAAAAGAGAAAGAAAATGAA
1 GAAAAAAAAAGA-AAA-AAAATGAA
*
51025648 GAAAACAAAAGAAAAAAAATG
1 GAAAAAAAAAGAAAAAAAATG
51025669 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.04
Consensus pattern (23 bp):
GAAAAAAAAAGAAAAAAAATGAA
Found at i:51026301 original size:37 final size:37
Alignment explanation
Indices: 51026260--51026347 Score: 176
Period size: 37 Copynumber: 2.4 Consensus size: 37
51026250 AACATAGACA
51026260 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
51026297 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
51026334 TGTATGTTCGGCCA
1 TGTATGTTCGGCCA
51026348 TAGGTAGCCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (37 bp):
TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
Found at i:51029442 original size:37 final size:37
Alignment explanation
Indices: 51029401--51029488 Score: 176
Period size: 37 Copynumber: 2.4 Consensus size: 37
51029391 AACATAGACA
51029401 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
51029438 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
51029475 TGTATGTTCGGCCA
1 TGTATGTTCGGCCA
51029489 TAGGTAGCCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (37 bp):
TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
Found at i:51031932 original size:23 final size:22
Alignment explanation
Indices: 51031894--51031948 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
51031884 AGTTAGTAAT
51031894 AAAG-AAATGGAAAAAA-AAAGAG
1 AAAGAAAAT-GAAAAAACAAA-AG
51031916 AAAGAAAATGAAGAAAACAAAAG
1 AAAGAAAATGAA-AAAACAAAAG
*
51031939 AAAAAAAATG
1 AAAGAAAATG
51031949 TGTCCATCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 7 0.24
23 19 0.66
24 3 0.10
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (22 bp):
AAAGAAAATGAAAAAACAAAAG
Found at i:51031937 original size:25 final size:23
Alignment explanation
Indices: 51031903--51031948 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
51031893 TAAAGAAATG
51031903 GAAAAAAAAAGAGAAAGAAAATGAA
1 GAAAAAAAAAGA-AAA-AAAATGAA
*
51031928 GAAAACAAAAGAAAAAAAATG
1 GAAAAAAAAAGAAAAAAAATG
51031949 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.04
Consensus pattern (23 bp):
GAAAAAAAAAGAAAAAAAATGAA
Found at i:51032631 original size:37 final size:37
Alignment explanation
Indices: 51032543--51032632 Score: 171
Period size: 37 Copynumber: 2.4 Consensus size: 37
51032533 AACATAGACA
*
51032543 TGTATGTTCGGCCACATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCATATGAATAAGTACATAAGTTATG
51032580 TGTATGTTCGGCCATATGAATAAGTACATAAGTTATG
1 TGTATGTTCGGCCATATGAATAAGTACATAAGTTATG
51032617 TGTATGTTCGGCCATA
1 TGTATGTTCGGCCATA
51032633 GGTAGCCTAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.34
Consensus pattern (37 bp):
TGTATGTTCGGCCATATGAATAAGTACATAAGTTATG
Found at i:51033377 original size:40 final size:40
Alignment explanation
Indices: 51033229--51033413 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
51033219 TCGAATGATG
* * * * * *
51033229 TCCGGGATAAGTCCCGAGGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
51033269 TCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51033309 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51033348 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
51033389 -CCGGGCTATA-TCCCGAAGGCATTTG
1 TCCGGGCTA-AGTCCCGAAGGCATTTG
51033414 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51033435 original size:79 final size:79
Alignment explanation
Indices: 51033282--51033436 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
51033272 GAACTAAGAT
* **
51033282 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
51033347 ATCCAGGTTAAGTC
66 ATCCAGGTTAAGTC
* *
51033361 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATATCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTA-AGCCCGAAGGCATTGGAACGAGTTA-C
*
51033424 TATATCC-GGTTAA
63 TAAATCCAGGTTAA
51033437 ATTCTGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.60
80 25 0.37
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCAGGTTAAGTC
Found at i:51036354 original size:6 final size:6
Alignment explanation
Indices: 51036336--51036423 Score: 72
Period size: 6 Copynumber: 14.3 Consensus size: 6
51036326 AAGAAACATT
* * *
51036336 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAAA ATTAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
51036385 ATCAGA ATCAGT ATCAGA TAACAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA -ATCAGA ATCAGA ATCAGA AT
51036424 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
5 2 0.03
6 53 0.83
7 8 0.12
8 1 0.02
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:51036357 original size:18 final size:18
Alignment explanation
Indices: 51036336--51036423 Score: 72
Period size: 19 Copynumber: 4.8 Consensus size: 18
51036326 AAGAAACATT
51036336 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
51036354 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
* * *
51036371 GTGACAAAATTAGAATCAGA
1 AT--CAGAATCAGAATCAGA
* *
51036391 ATCAGTATCAGATAACAGA
1 ATCAGAATCAGA-ATCAGA
*
51036410 ATCAAAATCAGAAT
1 ATCAGAATCAGAAT
51036424 GTGAATGCAA
Statistics
Matches: 54, Mismatches: 11, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
17 1 0.02
18 23 0.43
19 29 0.54
20 1 0.02
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:51036416 original size:37 final size:36
Alignment explanation
Indices: 51036344--51036423 Score: 90
Period size: 37 Copynumber: 2.2 Consensus size: 36
51036334 TTATCAGAAC
* *
51036344 TAGAATCAGAATCAGAATCAGAATCAGGTGACAAAAT
1 TAGAATCAGAATCAGAATCAGAAACAGAT-ACAAAAT
*
51036381 TAGAATCAGAATCAGTATCAGATAACAGA-ATCAAAAT
1 TAGAATCAGAATCAGAATCAGA-AACAGATA-CAAAAT
*
51036418 CAGAAT
1 TAGAAT
51036424 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
36 1 0.03
37 32 0.86
38 4 0.11
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (36 bp):
TAGAATCAGAATCAGAATCAGAAACAGATACAAAAT
Found at i:51036419 original size:31 final size:31
Alignment explanation
Indices: 51036345--51036423 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
51036335 TATCAGAACT
* *
51036345 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGATAAC
* * *
51036376 AAAATTAGAATCAGAATCAGTATCAGATAAC
1 AGAATCAGAATCAGAATCAGAATCAGATAAC
*
51036407 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
51036424 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGATAAC
Found at i:51036869 original size:27 final size:27
Alignment explanation
Indices: 51036839--51037149 Score: 390
Period size: 27 Copynumber: 11.5 Consensus size: 27
51036829 GTGTAAAATG
* * * *
51036839 GTAATTTTACCCCACAAGGGTATCTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
*
51036866 GTAATACTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* * **
51036893 GTAATTCTATCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTA
* * *
51036920 GTATTTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTA
51036947 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
51036974 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTA
*
51037001 ATAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* * *
51037028 GTAATTTTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTA
51037055 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* * * *
51037082 GAAATTCTACCCTAAAAGGGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
51037108 GATGATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTATTTTA
51037136 GTAATTCTACCCTA
1 GTAATTCTACCCTA
51037150 TAATTCTACC
Statistics
Matches: 242, Mismatches: 40, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 4 0.02
27 234 0.97
28 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTA
Found at i:51037155 original size:13 final size:13
Alignment explanation
Indices: 51037137--51037162 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51037127 GGTATTTTGG
51037137 TAATTCTACCCTA
1 TAATTCTACCCTA
51037150 TAATTCTACCCTA
1 TAATTCTACCCTA
51037163 CAGAGGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (13 bp):
TAATTCTACCCTA
Found at i:51037171 original size:40 final size:40
Alignment explanation
Indices: 51037112--51037189 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
51037102 TATTTCGATG
* *
51037112 ATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATA
1 ATTCTACCCTACAGAGGTATTTCGGTAATTCTACCCTATA
51037152 ATTCTACCCTACAGAGGTATTTCGGTAATTCTACCCTA
1 ATTCTACCCTACAGAGGTATTTCGGTAATTCTACCCTA
51037190 CAGGGGTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (40 bp):
ATTCTACCCTACAGAGGTATTTCGGTAATTCTACCCTATA
Found at i:51037188 original size:27 final size:27
Alignment explanation
Indices: 51037150--51037208 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
51037140 TTCTACCCTA
51037150 TAATTCTACCCTACAGAGGTATTTCGG
1 TAATTCTACCCTACAGAGGTATTTCGG
* *
51037177 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAGAGGTATTTCGG
51037204 TAATT
1 TAATT
51037209 TTATAAACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGAGGTATTTCGG
Found at i:51037223 original size:27 final size:27
Alignment explanation
Indices: 51037193--51037513 Score: 399
Period size: 27 Copynumber: 11.9 Consensus size: 27
51037183 TACCCTACAG
*
51037193 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
51037220 GGGTATTTTAGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
51037247 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
51037274 TGGTATTTTAGTAATCTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
51037301 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
51037328 GGGTATTCTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
51037355 GGGTATTTTTGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
51037382 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
51037409 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
51037436 GGGTATTCTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* **
51037463 GGGTATTTTGGTAATTTTACAAGTCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
** *
51037490 GGGTATTTCAGTAATTTTGTAAAC
1 GGGTATTTTGGTAATTTTATAAAC
51037514 TAAAGTATTC
Statistics
Matches: 247, Mismatches: 47, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 247 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:51037234 original size:54 final size:54
Alignment explanation
Indices: 51037190--51037507 Score: 474
Period size: 54 Copynumber: 5.9 Consensus size: 54
51037180 TTCTACCCTA
* *
51037190 CAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
* * * *
51037244 CAGGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTAGTAATCTTATAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
* *
51037298 CAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
* * *
51037352 CAGGGGTATTTTTGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
* * *
51037406 CAAGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
* ** *
51037460 CAGGGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTCAGTAATTTT
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTT
51037508 GTAAACTAAA
Statistics
Matches: 236, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 236 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
Found at i:51042293 original size:39 final size:39
Alignment explanation
Indices: 51042245--51042333 Score: 124
Period size: 39 Copynumber: 2.3 Consensus size: 39
51042235 TTTAACCCAT
* *
51042245 ATATTTTTCCAGCACGTAGCCTACAGACCTCATGTCCGG
1 ATATATTTCCAGCACATAGCCTACAGACCTCATGTCCGG
* * * *
51042284 ATATATTTCCCGCATATAGCCTGCGGACCTCATGTCCGG
1 ATATATTTCCAGCACATAGCCTACAGACCTCATGTCCGG
51042323 ATATATTTCCA
1 ATATATTTCCA
51042334 ATCTCATATA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (39 bp):
ATATATTTCCAGCACATAGCCTACAGACCTCATGTCCGG
Found at i:51045825 original size:17 final size:18
Alignment explanation
Indices: 51045794--51045831 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
51045784 TAATATGGTT
51045794 TGATATGGATGTGAT-TA
1 TGATATGGATGTGATATA
* *
51045811 TGATATGGTTTTGATATA
1 TGATATGGATGTGATATA
51045829 TGA
1 TGA
51045832 ATTATGAGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.45
Consensus pattern (18 bp):
TGATATGGATGTGATATA
Found at i:51047311 original size:18 final size:18
Alignment explanation
Indices: 51047288--51047326 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
51047278 TAACTAACAC
51047288 TAAGAAAAACAAGAAAAA
1 TAAGAAAAACAAGAAAAA
**
51047306 TAAGAAAATGAAGAAAAA
1 TAAGAAAAACAAGAAAAA
51047324 TAA
1 TAA
51047327 ACTATAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.74, C:0.03, G:0.13, T:0.10
Consensus pattern (18 bp):
TAAGAAAAACAAGAAAAA
Found at i:51049691 original size:40 final size:40
Alignment explanation
Indices: 51049636--51049713 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
51049626 GGAAAAAAAA
*
51049636 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTAT
* * *
51049676 TATAACCGGGTTAAGTCCTAAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTT
51049714 GTTACATCCG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTAT
Found at i:51054852 original size:42 final size:43
Alignment explanation
Indices: 51054762--51054864 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 43
51054752 GTCCTGAACG
* ** * *
51054762 TGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCTAGATA
1 TGGTCTTACATGTAAATCAATATCGATGCCAATGTCCCAGACA
*
51054805 GGGTCTTACATG-AAATCAGATA-CGATGCCAATGTCCCAGACA
1 TGGTCTTACATGTAAATCA-ATATCGATGCCAATGTCCCAGACA
* *
51054847 TGGTCTTATACGTAAATC
1 TGGTCTTACATGTAAATC
51054865 TCAATCGAGG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 30 0.61
43 19 0.39
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (43 bp):
TGGTCTTACATGTAAATCAATATCGATGCCAATGTCCCAGACA
Found at i:51075118 original size:27 final size:26
Alignment explanation
Indices: 51075074--51075164 Score: 87
Period size: 26 Copynumber: 3.5 Consensus size: 26
51075064 ATGGAGGAAG
* *
51075074 TACTG-TACTGGTGACTATGTCACAT
1 TACTGTTACTGGTGGCTATGCCACAT
*
51075099 TCACTGTTACTGGTGGCTATGCCAGGAT
1 T-ACTGTTACTGGTGGCTATGCCA-CAT
* *
51075127 TACTGATA-TGGTGGCTTTGCCACATT
1 TACTGTTACTGGTGGCTATGCCACA-T
*
51075153 TACTGTTTCTGG
1 TACTGTTACTGG
51075165 CAGCAATATT
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
25 2 0.04
26 24 0.45
27 24 0.45
28 3 0.06
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (26 bp):
TACTGTTACTGGTGGCTATGCCACAT
Found at i:51076663 original size:40 final size:40
Alignment explanation
Indices: 51076597--51076727 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
51076587 CGATATCTCG
* * * * * *
51076597 CACACTAAGTGCCGTACATAGTCGAAGTTATCTCAAATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
* *
51076637 CACACTAAGTGTCATATATAGCCGAAGCTATGTCGAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
* *
51076677 CACACTAAGTGCCATATATAGCCGAAGCTATGTTGTATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
51076717 CACACTAAGTG
1 CACACTAAGTG
51076728 AAACAAATAA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
Found at i:51079732 original size:79 final size:79
Alignment explanation
Indices: 51079633--51079852 Score: 205
Period size: 79 Copynumber: 2.8 Consensus size: 79
51079623 CTCGTTCAAG
* * ** * *
51079633 TGCCTTCGGGACATAGCCCGGTCATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACATAACCCGG-AATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-AT
*
51079697 TAA-AACTCGCACGAA
64 TAATAACTCGCACAAA
* * * *
51079712 TGCCTTCGGGACTTAACCCGGAATTGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATTA
1 TGCCTTCGGGACATAACCCGGAATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATTA
51079777 ATAACTCGCACAAA
66 ATAACTCGCACAAA
* * ** * * *
51079791 TACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGA-ATAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
51079853 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
78 16 0.14
79 68 0.59
80 26 0.22
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
TGCCTTCGGGACATAACCCGGAATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATTA
ATAACTCGCACAAA
Found at i:51079812 original size:40 final size:40
Alignment explanation
Indices: 51079670--51079852 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
51079660 TAACTCATTC
* *
51079670 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
51079710 AATGCCTTCGGGACTTAACCCGGAATT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
51079749 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
51079789 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
51079830 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51079853 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
39 41 0.34
40 68 0.57
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:51087554 original size:39 final size:39
Alignment explanation
Indices: 51087506--51087668 Score: 100
Period size: 40 Copynumber: 4.1 Consensus size: 39
51087496 CGGAATTTAA
* * *
51087506 CCGGATATAGCT-CCTCGTTCAAGTGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCATTCAA-TGCCTTCGGGACATAAC
*
51087546 CCGG-TATAGTAACTCATTCAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCATTCAATGCCTTCGGGACATAAC
* * *** *
51087584 CCGGATTTTA-AAACTCGCACGAATGCCTTCGGGACTTAAC
1 CCGGA-TATAGTAACTCATTC-AATGCCTTCGGGACATAAC
* *** * *
51087624 CCGGA-ATTAGTATCTCGCACAAAGGCCTTCGGGACTTAAC
1 CCGGATA-TAGTAACTCATTC-AATGCCTTCGGGACATAAC
51087664 CCGGA
1 CCGGA
51087669 ATTAATACTC
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
38 20 0.19
39 21 0.20
40 62 0.60
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCATTCAATGCCTTCGGGACATAAC
Found at i:51087707 original size:39 final size:39
Alignment explanation
Indices: 51087565--51087747 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 39
51087555 TAACTCATTC
* * *
51087565 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATACTCGCACA
*
51087605 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATA-CTCGCACA
*
51087645 AAGGCCTTCGGGACTTAACCCGGAATTAATACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATACTCGCACA
* ** * *
51087684 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAAT-AC-TCGCACA
*
51087725 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51087748 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
38 5 0.04
39 30 0.25
40 76 0.62
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATACTCGCACA
Found at i:51087707 original size:79 final size:80
Alignment explanation
Indices: 51087568--51087747 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
51087558 CTCATTCAAT
* * *
51087568 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
*
51087632 AGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
* **
51087647 GGCCTTCGGGACTTAACCCGGA-ATTAATACTCGCACAAATACCTTC-GGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGA-CTTAACCCGGATA
51087710 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
51087727 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
51087748 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 31 0.35
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:51099701 original size:24 final size:24
Alignment explanation
Indices: 51099664--51099716 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
51099654 AATTAACCAT
* * *
51099664 AAAATAGATTAAGAGGAATAAAAA
1 AAAATAAATAAAGAGAAATAAAAA
*
51099688 TAAATAAATAAAGAGAAATAAAAA
1 AAAATAAATAAAGAGAAATAAAAA
51099712 AAAAT
1 AAAAT
51099717 CTAAATTGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (24 bp):
AAAATAAATAAAGAGAAATAAAAA
Found at i:51102889 original size:86 final size:86
Alignment explanation
Indices: 51102787--51103046 Score: 511
Period size: 86 Copynumber: 3.0 Consensus size: 86
51102777 TTATATGTAA
51102787 GACCATATTTTGTATTATGGCTTTGTATGATAACAAGAAAGTATTGACTAGCATAGTTTGATGAG
1 GACCATATTTTGTATTATGGCTTTGTATGATAACAAGAAAGTATTGACTAGCATAGTTTGATGAG
51102852 AATAAGTTTAGTTGATGATAT
66 AATAAGTTTAGTTGATGATAT
51102873 GACCATATTTTGTATTATGGCTTTGTATGATAACAAGAAAGTATTGACTAGCATAGTTTGATGAG
1 GACCATATTTTGTATTATGGCTTTGTATGATAACAAGAAAGTATTGACTAGCATAGTTTGATGAG
51102938 AATAAGTTTAGTTGATGATAT
66 AATAAGTTTAGTTGATGATAT
51102959 GACCATATTTTGTATTATGGCTTTGTATGATAACAAGAAAGTATTGACTAGCATAGTTTGATGAG
1 GACCATATTTTGTATTATGGCTTTGTATGATAACAAGAAAGTATTGACTAGCATAGTTTGATGAG
*
51103024 AATAAGTTAAGTTGATGATAT
66 AATAAGTTTAGTTGATGATAT
51103045 GA
1 GA
51103047 TGAGATTGAG
Statistics
Matches: 173, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 173 1.00
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (86 bp):
GACCATATTTTGTATTATGGCTTTGTATGATAACAAGAAAGTATTGACTAGCATAGTTTGATGAG
AATAAGTTTAGTTGATGATAT
Found at i:51103478 original size:47 final size:47
Alignment explanation
Indices: 51103420--51103541 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
51103410 GCATTGGCAC
51103420 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
51103467 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
51103514 TAAGATAGGGATACCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
51103542 CCAAGGCATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:51103649 original size:55 final size:54
Alignment explanation
Indices: 51103522--51103727 Score: 227
Period size: 53 Copynumber: 3.8 Consensus size: 54
51103512 GGTAAGATAG
* * *
51103522 GGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATATGGCAT
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAA
* * * * *
51103576 GGAAATCATGTAAGACCATGTCAAGACATGGTATTGATAAGTTACTATAAGGTAAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGG-CAA
* * * *
51103632 GG-TCCCATGTAAGACCATGCCAAGGCATAGCATTGGTAAGTTC-ATAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAA
* * * * *
51103684 GGATACCACGGAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
51103728 AAAGAGGGAA
Statistics
Matches: 125, Mismatches: 24, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
52 4 0.03
53 40 0.32
54 39 0.31
55 39 0.31
56 3 0.02
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
GGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAA
Found at i:51104236 original size:41 final size:41
Alignment explanation
Indices: 51104191--51104272 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
51104181 GAGTACTTAA
51104191 AAGCAAGCTCAGGTTGGAGGACGCTAGAGATCACTTCACAC
1 AAGCAAGCTCAGGTTGGAGGACGCTAGAGATCACTTCACAC
* *
51104232 AAGCAAGCTCAGGTTGGAGGTCGTTAGAGATCACTTCACAC
1 AAGCAAGCTCAGGTTGGAGGACGCTAGAGATCACTTCACAC
51104273 TATCGACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (41 bp):
AAGCAAGCTCAGGTTGGAGGACGCTAGAGATCACTTCACAC
Found at i:51114122 original size:40 final size:40
Alignment explanation
Indices: 51114067--51114333 Score: 480
Period size: 40 Copynumber: 6.7 Consensus size: 40
51114057 AACATTGGAT
51114067 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
51114107 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
51114147 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
51114187 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
51114227 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
51114267 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
51114307 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
51114334 ATGTGTTTGC
Statistics
Matches: 217, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:51123070 original size:41 final size:40
Alignment explanation
Indices: 51122879--51123147 Score: 466
Period size: 40 Copynumber: 6.7 Consensus size: 40
51122869 AACATTGGAT
51122879 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
51122919 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
51122959 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
51122999 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
51123039 TATATCCGGGCTATGGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTA-AGACCCGAAGGCAATTATGCGAGTTGA
51123080 TATATCCGGGCTAAGACCCGAAGGCAATTAATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATT-ATGCGAGTTGA
* *
51123121 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
51123148 ATGTGTTTGC
Statistics
Matches: 217, Mismatches: 10, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
40 146 0.67
41 71 0.33
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:51128297 original size:26 final size:26
Alignment explanation
Indices: 51128260--51128341 Score: 85
Period size: 26 Copynumber: 3.1 Consensus size: 26
51128250 GTGCCTGGAT
51128260 CCCTATGTGATAAAATGACTGTTTTGC
1 CCCTA-GTGATAAAATGACTGTTTTGC
* *
51128287 CCCTAGTGATAAAATGACTATTTTTC
1 CCCTAGTGATAAAATGACTGTTTTGC
** *
51128313 CTTTA-TGTAGTAAAATGATTGTTTTGC
1 CCCTAGTG-A-TAAAATGACTGTTTTGC
51128340 CC
1 CC
51128342 TTTTGTAGTA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
25 2 0.04
26 23 0.51
27 20 0.44
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (26 bp):
CCCTAGTGATAAAATGACTGTTTTGC
Found at i:51128380 original size:54 final size:53
Alignment explanation
Indices: 51128263--51128418 Score: 154
Period size: 54 Copynumber: 2.9 Consensus size: 53
51128253 CCTGGATCCC
*
51128263 TATGTGATAAAATGACTGTTTTGCCCCTAGTGATAAAATGACTATTTTTCCTT
1 TATGTGGTAAAATGACTGTTTTGCCCCTAGTGATAAAATGACTATTTTTCCTT
* * ** * * *
51128316 TATGTAGTAAAATGATTGTTTTG-CCCTTTTGTAGTAAGATGATTGTTTTTCCTT
1 TATGTGGTAAAATGACTGTTTTGCCCCTAGTG-A-TAAAATGACTATTTTTCCTT
* * * *
51128370 TATGTGGTAAAATGACTATTTTTCCCTTATGTGGA-AAAATAACTATTTT
1 TATGTGGTAAAATGACTGTTTTGCCCCTA-GT-GATAAAATGACTATTTT
51128419 CCCTATGTGA
Statistics
Matches: 79, Mismatches: 19, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
52 6 0.08
53 21 0.27
54 46 0.58
55 3 0.04
56 2 0.03
57 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.45
Consensus pattern (53 bp):
TATGTGGTAAAATGACTGTTTTGCCCCTAGTGATAAAATGACTATTTTTCCTT
Found at i:51128391 original size:26 final size:26
Alignment explanation
Indices: 51128263--51128420 Score: 113
Period size: 27 Copynumber: 5.9 Consensus size: 26
51128253 CCTGGATCCC
* * **
51128263 TATGTGATAAAATGACTGTTTTGCCCC
1 TATGTGGTAAAATGACTATTTT-CCTT
*
51128290 TA-GTGATAAAATGACTATTTTTCCTT
1 TATGTGGTAAAATGACTA-TTTTCCTT
* * *
51128316 TATGTAGTAAAATGATTGTTTTGCCCTT
1 TATGTGGTAAAATGACTATTTT--CCTT
* * * *
51128344 T-TGTAGTAAGATGATTGTTTTTCCTT
1 TATGTGGTAAAATGACT-ATTTTCCTT
*
51128370 TATGTGGTAAAATGACTATTTTTCCCT
1 TATGTGGTAAAATGACTA-TTTTCCTT
* *
51128397 TATGTGGAAAAATAACTATTTTCC
1 TATGTGGTAAAATGACTATTTTCC
51128421 CTATGTGATG
Statistics
Matches: 108, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
26 33 0.31
27 66 0.61
28 9 0.08
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (26 bp):
TATGTGGTAAAATGACTATTTTCCTT
Found at i:51128421 original size:26 final size:27
Alignment explanation
Indices: 51128361--51128427 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
51128351 AAGATGATTG
* * *
51128361 TTTTTCCTTTATGTGGTAAAATGACTA
1 TTTTTCCCTTATGTGGAAAAATAACTA
51128388 TTTTTCCCTTATGTGGAAAAATAACTA
1 TTTTTCCCTTATGTGGAAAAATAACTA
51128415 -TTTTCCC-TATGTG
1 TTTTTCCCTTATGTG
51128428 ATGTATATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 6 0.16
26 7 0.19
27 24 0.65
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.46
Consensus pattern (27 bp):
TTTTTCCCTTATGTGGAAAAATAACTA
Found at i:51141805 original size:10 final size:10
Alignment explanation
Indices: 51141790--51141818 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
51141780 GAGTTAAAGC
51141790 TTTAATTTTT
1 TTTAATTTTT
51141800 TTTAATTTTT
1 TTTAATTTTT
51141810 TTTAATTTT
1 TTTAATTTT
51141819 ATATGTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTAATTTTT
Found at i:51143116 original size:40 final size:40
Alignment explanation
Indices: 51143052--51143145 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
51143042 GACTATGTTC
*
51143052 GGCACTAAGTGTGCAATTCAAAATAGCTTCGGCTATAAAT-A
1 GGCACTAAGTGTGCAATTCAAAATAGCTTCAGCTAT--ATGA
* *
51143093 -GCACTAAGTGTGCAAATT-GAAATAGCTTTAGCTATATGA
1 GGCACTAAGTGTGC-AATTCAAAATAGCTTCAGCTATATGA
51143132 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
51143146 GATACATAGA
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
38 2 0.04
39 1 0.02
40 40 0.85
41 4 0.09
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (40 bp):
GGCACTAAGTGTGCAATTCAAAATAGCTTCAGCTATATGA
Found at i:51145776 original size:45 final size:45
Alignment explanation
Indices: 51145562--51145778 Score: 355
Period size: 45 Copynumber: 4.8 Consensus size: 45
51145552 TTTCACTGAT
* *
51145562 ATTATAGCCTGCTAGACTCGAAA-GCCCGAATAGTATCTCACCGGC
1 ATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTGTCTCACCGGC
* * *
51145607 ATTGTAGCCTGCTAGGCTCAAAGGCCTGAATAGTATCTCACCGGC
1 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTCTCACCGGC
51145652 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTCTCACCGGC
1 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTCTCACCGGC
51145697 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTCTCACCGGC
1 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTCTCACCGGC
* *
51145742 ATTATAGTCTGCTAGGCTCAAAGGCCTGAATAGTGTC
1 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTC
51145779 GTACGATAAT
Statistics
Matches: 163, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
44 3 0.02
45 160 0.98
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (45 bp):
ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTCTCACCGGC
Found at i:51153323 original size:7 final size:7
Alignment explanation
Indices: 51153313--51153352 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
51153303 AAAAGAGGAT
51153313 GATGAGG
1 GATGAGG
51153320 GATGAGG
1 GATGAGG
51153327 GATGAGG
1 GATGAGG
*
51153334 GATGATG
1 GATGAGG
*
51153341 AATGAGG
1 GATGAGG
51153348 GATGA
1 GATGA
51153353 AGGGGTCATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.33, C:0.00, G:0.50, T:0.17
Consensus pattern (7 bp):
GATGAGG
Found at i:51155003 original size:29 final size:29
Alignment explanation
Indices: 51154971--51155028 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
51154961 TATAAACCTT
51154971 CATGCATGTCTAATCTCAAAAGAAACTAA
1 CATGCATGTCTAATCTCAAAAGAAACTAA
51155000 CATGCATGTCTAATCTCAAAAGAAACTAA
1 CATGCATGTCTAATCTCAAAAGAAACTAA
51155029 GTTTTCATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.45, C:0.21, G:0.10, T:0.24
Consensus pattern (29 bp):
CATGCATGTCTAATCTCAAAAGAAACTAA
Found at i:51157468 original size:46 final size:46
Alignment explanation
Indices: 51157401--51157529 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
51157391 TGTAACCCGC
* * * *
51157401 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
51157447 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
51157493 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51157530 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51157548 original size:46 final size:45
Alignment explanation
Indices: 51157409--51157548 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
51157399 GCCCATAAGC
* ** * *
51157409 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
51157455 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
51157501 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
51157547 GA
1 GA
51157549 CATGTCACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Done.