Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 154 of 343
Found at i:51179233 original size:40 final size:40
Alignment explanation
Indices: 51179155--51179335 Score: 251
Period size: 40 Copynumber: 4.5 Consensus size: 40
51179145 ACCCAAGTAT
* * *
51179155 CTTCGGGATTTAG-CCAGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
*
51179194 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCA-AGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACA-AATGC
51179234 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
51179274 CTTCAGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
51179314 CTTCGGGACTTAGCCTGGATAT
1 CTTCGGGACTTAGCCCGGATAT
51179336 CATCCGAATA
Statistics
Matches: 128, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
39 12 0.09
40 114 0.89
41 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:51189534 original size:28 final size:28
Alignment explanation
Indices: 51189465--51189546 Score: 94
Period size: 28 Copynumber: 3.0 Consensus size: 28
51189455 AATCTCATAT
* * * *
51189465 CTGTAGGCTAGTATTACTGAAAT-ACTC
1 CTGTAGGATAGAATTACTGAAATGCCCC
* *
51189492 CTATAGGGTAGAATTACTGAAATGCCCC
1 CTGTAGGATAGAATTACTGAAATGCCCC
*
51189520 CTGTAGGATAGAATTATTGAAATGCCC
1 CTGTAGGATAGAATTACTGAAATGCCC
51189547 TGTAGGTAGA
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
27 20 0.43
28 26 0.57
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (28 bp):
CTGTAGGATAGAATTACTGAAATGCCCC
Found at i:51189918 original size:25 final size:26
Alignment explanation
Indices: 51189858--51189906 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
51189848 ATTTGTCTTA
*
51189858 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
51189882 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
51189907 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:51191131 original size:37 final size:37
Alignment explanation
Indices: 51191081--51191152 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
51191071 TTTAGCCCGA
*
51191081 ATAATCCCCACACGTAGTCATCGGGTCTTACCCGGGC
1 ATAATCCCCACACGTAGCCATCGGGTCTTACCCGGGC
*
51191118 ATAATCTCCACACGTAGCCATCGGGTCTTACCCGG
1 ATAATCCCCACACGTAGCCATCGGGTCTTACCCGG
51191153 AATATATTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.35, G:0.21, T:0.22
Consensus pattern (37 bp):
ATAATCCCCACACGTAGCCATCGGGTCTTACCCGGGC
Found at i:51191346 original size:48 final size:48
Alignment explanation
Indices: 51191286--51191391 Score: 158
Period size: 48 Copynumber: 2.2 Consensus size: 48
51191276 CGGCCACAAT
* * *
51191286 ATATACACATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCAGATTTACCAC
*
51191334 ATATACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCAGATTTACCAC
* *
51191382 ACATATATAT
1 ATATACATAT
51191392 ATTTATCTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.34
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCAGATTTACCAC
Found at i:51193837 original size:16 final size:15
Alignment explanation
Indices: 51193818--51193852 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
51193808 CTGAACCTAG
*
51193818 CCCAGCTCGGCCCGAA
1 CCCAGCGCGGCCCG-A
51193834 CCCAGCGCGGCCCGA
1 CCCAGCGCGGCCCGA
51193849 CCCA
1 CCCA
51193853 TGATCACCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.17, C:0.54, G:0.26, T:0.03
Consensus pattern (15 bp):
CCCAGCGCGGCCCGA
Found at i:51194024 original size:81 final size:81
Alignment explanation
Indices: 51193902--51194135 Score: 222
Period size: 81 Copynumber: 2.9 Consensus size: 81
51193892 ATTGGTTTAC
* * * * * * *
51193902 AAAATTAACAAAATACCTCTAG-TTTGTAAAATTACCAAAATACCC-ATGATTTGTGAAATTGCC
1 AAAATTATCGAAATACC-CTAGATTTGTAAAATTACAAAAATACCCTA-GACTTGTAAAATTACA
*
51193965 CAAATACCCTCGACCTGT
64 CAAATACCCTCGACCTGA
* ** * *
51193983 AAAATTATCGAAATACCCTAGACTTGTAAAATTACTGAAATACCCTAGACTTGTAAAATTATAGA
1 AAAATTATCGAAATACCCTAGATTTGTAAAATTACAAAAATACCCTAGACTTGTAAAATTACACA
* **
51194048 AATACCCTTGATTTGA
66 AATACCCTCGACCTGA
* * * *
51194064 AAAATTATCGAAATACCATTGATTTGGAAAATTACAAAAATACCCTTGACTT-TCAAAAATTACA
1 AAAATTATCGAAATACCCTAGATTTGTAAAATTACAAAAATACCCTAGACTTGT--AAAATTACA
*
51194128 TAAATACC
64 CAAATACC
51194136 ATTGGTTTGC
Statistics
Matches: 125, Mismatches: 24, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
80 5 0.04
81 104 0.83
82 16 0.13
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTATCGAAATACCCTAGATTTGTAAAATTACAAAAATACCCTAGACTTGTAAAATTACACA
AATACCCTCGACCTGA
Found at i:51194163 original size:27 final size:27
Alignment explanation
Indices: 51193877--51194173 Score: 195
Period size: 27 Copynumber: 11.0 Consensus size: 27
51193867 TGTAGGGTAG
* * **
51193877 AATTACTGAAATACCATTGGTTTACAA
1 AATTACCGAAATACCATTGATTTGTAA
* *
51193904 AATTAACAAAATACC-TCT-AGTTTGTAA
1 AATTACCGAAATACCAT-TGA-TTTGTAA
* *
51193931 AATTACCAAAATACCCA-TGATTTGTGA
1 AATTACCGAAATA-CCATTGATTTGTAA
* * * * **
51193958 AATTGCCCAAATACCCTCGACCTGTAA
1 AATTACCGAAATACCATTGATTTGTAA
* * * *
51193985 AATTATCGAAATACCCTAGACTTGTAA
1 AATTACCGAAATACCATTGATTTGTAA
* * * *
51194012 AATTACTGAAATACCCTAGACTTGTAA
1 AATTACCGAAATACCATTGATTTGTAA
** * *
51194039 AATTATAGAAATACCCTTGATTTGAAA
1 AATTACCGAAATACCATTGATTTGTAA
* *
51194066 AATTATCGAAATACCATTGATTTGGAA
1 AATTACCGAAATACCATTGATTTGTAA
** * **
51194093 AATTACAAAAATACCCTTGACTTTCAAA
1 AATTACCGAAATACCATTGA-TTTGTAA
** * *
51194121 AATTACATAAATACCATTGGTTTGCAA
1 AATTACCGAAATACCATTGATTTGTAA
*
51194148 AATTACCGAAATACCATTGGTTTGTA
1 AATTACCGAAATACCATTGATTTGTA
51194174 GATTTATCAA
Statistics
Matches: 219, Mismatches: 44, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.01
27 191 0.87
28 25 0.11
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.31
Consensus pattern (27 bp):
AATTACCGAAATACCATTGATTTGTAA
Found at i:51194191 original size:82 final size:82
Alignment explanation
Indices: 51193983--51194193 Score: 203
Period size: 82 Copynumber: 2.6 Consensus size: 82
51193973 CTCGACCTGT
* * * * * ** * * *
51193983 AAAATTATCGAAATACCCTAGACTTGTAAAATTACTGAAATACCCTAGACTTGT--AAAATTATA
1 AAAATTACCGAAATACCATTGATTTGGAAAATTACAAAAACACCCTTGACTT-TCAAAAATTACA
*
51194046 GAAATACCCTTGATTTGA
65 GAAATACCATTGATTTGA
* * *
51194064 AAAATTATCGAAATACCATTGATTTGGAAAATTACAAAAATACCCTTGACTTTCAAAAATTACAT
1 AAAATTACCGAAATACCATTGATTTGGAAAATTACAAAAACACCCTTGACTTTCAAAAATTACAG
* *
51194129 AAATACCATTGGTTTGC
66 AAATACCATTGATTTGA
* * * *
51194146 AAAATTACCGAAATACCATTGGTTTGTAGATTTATC-AAAACACCCTTG
1 AAAATTACCGAAATACCATTGATTTGGAAAATTA-CAAAAACACCCTTG
51194194 GAGGGTGAAA
Statistics
Matches: 109, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
80 1 0.01
81 45 0.41
82 62 0.57
83 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (82 bp):
AAAATTACCGAAATACCATTGATTTGGAAAATTACAAAAACACCCTTGACTTTCAAAAATTACAG
AAATACCATTGATTTGA
Found at i:51194478 original size:41 final size:41
Alignment explanation
Indices: 51194431--51194553 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
51194421 GGAGGAAGAA
* *
51194431 ATTGAGGATCACATGGTTGCTTGACAATCGTGGATCCACCG
1 ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
**
51194472 ATTGAGGATCGTATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
*
51194513 ATTAAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
51194554 GTAGCTTTTA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:51198634 original size:34 final size:34
Alignment explanation
Indices: 51198591--51198659 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
51198581 ACATATTCGA
* *
51198591 TACTGTACTGAGATGGGCTAGGGCCCAA-ACTGT
1 TACTGTACTGAAAAGGGCTAGGGCCCAAGACTGT
*
51198624 TACTGATACTGAAAAGGGCTTGGGCCCAAGACTGT
1 TACTG-TACTGAAAAGGGCTAGGGCCCAAGACTGT
51198659 T
1 T
51198660 TTAACTGTGC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
33 5 0.16
34 20 0.65
35 6 0.19
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (34 bp):
TACTGTACTGAAAAGGGCTAGGGCCCAAGACTGT
Found at i:51224531 original size:46 final size:46
Alignment explanation
Indices: 51224481--51224656 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
51224471 TGATTGAGCA
51224481 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51224527 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51224572 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
51224620 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51224657 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51224637 original size:93 final size:93
Alignment explanation
Indices: 51224478--51224649 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
51224468 GGATGATTGA
*
51224478 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
51224543 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
51224571 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
51224635 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
51224650 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51232293 original size:47 final size:47
Alignment explanation
Indices: 51232239--51232432 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
51232229 TTAGGATTTT
** * * *
51232239 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51232286 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51232333 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
51232380 ATGTGGTGAATGTGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51232427 ATGTGA
1 ATGTGA
51232433 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51232388 original size:25 final size:25
Alignment explanation
Indices: 51232313--51232388 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
51232303 ATGCATATAT
51232313 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
51232338 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
51232360 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
51232385 GTGA
1 GTGA
51232389 ATGTGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:51232465 original size:48 final size:48
Alignment explanation
Indices: 51232402--51232536 Score: 261
Period size: 48 Copynumber: 2.8 Consensus size: 48
51232392 TGAACATGCA
51232402 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
51232450 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
51232498 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
51232537 GGCGATGTTC
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:51232828 original size:37 final size:37
Alignment explanation
Indices: 51232683--51232827 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
51232673 GGAAATATAT
51232683 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
51232720 TTCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
51232757 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
51232794 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
51232828 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:51247896 original size:37 final size:37
Alignment explanation
Indices: 51247855--51247932 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
51247845 CTATTGTTCA
51247855 CTTAATGTCATTCATGATTTAACATTAAAAGCAAATT
1 CTTAATGTCATTCATGATTTAACATTAAAAGCAAATT
51247892 CTTAATGTCATTCATGATTTAACATTAAAAGCAAATT
1 CTTAATGTCATTCATGATTTAACATTAAAAGCAAATT
51247929 CTTA
1 CTTA
51247933 GTAACTATGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (37 bp):
CTTAATGTCATTCATGATTTAACATTAAAAGCAAATT
Found at i:51251080 original size:24 final size:23
Alignment explanation
Indices: 51251046--51251091 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
51251036 ACAGTGTACA
* *
51251046 CTCATATAGAGCCATTTCGGGAAG
1 CTCATAAAGAGCC-TATCGGGAAG
51251070 CTCATAAAGAGCCTATCGGGAA
1 CTCATAAAGAGCCTATCGGGAA
51251092 TGTAATGCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22
Consensus pattern (23 bp):
CTCATAAAGAGCCTATCGGGAAG
Found at i:51258637 original size:39 final size:40
Alignment explanation
Indices: 51258560--51258706 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
51258550 TAGCTCCTCG
* * *
51258560 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
51258600 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
51258639 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
51258679 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
51258707 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:51258717 original size:80 final size:80
Alignment explanation
Indices: 51258606--51258786 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
51258596 CTCATTCAAT
* * *
51258606 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
51258669 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
51258685 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
51258749 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
51258766 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
51258787 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:51258746 original size:40 final size:40
Alignment explanation
Indices: 51258603--51258786 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
51258593 TAACTCATTC
* *
51258603 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
51258643 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
51258683 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
51258723 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
51258764 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51258787 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:51271744 original size:29 final size:29
Alignment explanation
Indices: 51271664--51271785 Score: 142
Period size: 29 Copynumber: 4.3 Consensus size: 29
51271654 GTGAGCATGA
*
51271664 ATAT-AATGTGATTTGGGCCGGATGGGCC
1 ATATAAATGTGAATTGGGCCGGATGGGCC
* **
51271692 ATATAAAT-AG-ATTGGGCCTAATGGGCC
1 ATATAAATGTGAATTGGGCCGGATGGGCC
* *
51271719 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATAAATGTGAATTGGGCCGGATGGGCC
* * *
51271748 ATATGAACGTGAGTTGGGCCGGATGGGCC
1 ATATAAATGTGAATTGGGCCGGATGGGCC
51271777 ATATAAATG
1 ATATAAATG
51271786 AGATTAGGCC
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
27 21 0.27
28 6 0.08
29 52 0.66
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.26
Consensus pattern (29 bp):
ATATAAATGTGAATTGGGCCGGATGGGCC
Found at i:51278639 original size:29 final size:27
Alignment explanation
Indices: 51278598--51278743 Score: 116
Period size: 29 Copynumber: 5.1 Consensus size: 27
51278588 ATGAGCATGA
51278598 ATAT-AATGTGATTTGGGCTGGATGGGCC
1 ATATAAATGTGA-TTGGGCT-GATGGGCC
* *
51278626 ATATAAATGAGATTGGGCCTAATGGGCC
1 ATATAAATGTGATTGGG-CTGATGGGCC
* * *
51278654 ATATGAATGTGAATTAGGCCTGATAGGCC
1 ATATAAATGTG-ATT-GGGCTGATGGGCC
* * *
51278683 ATATGAATGTGAGTTGGGCCAGATGGGCT
1 ATATAAATGTGA-TTGGG-CTGATGGGCC
*
51278712 ATATAAATGAGATTGGGCCT-AGTGGGCC
1 ATATAAATGTGATTGGG-CTGA-TGGGCC
51278740 ATAT
1 ATAT
51278744 TCATGTATGT
Statistics
Matches: 96, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
27 1 0.01
28 44 0.46
29 49 0.51
30 2 0.02
ACGTcount: A:0.28, C:0.12, G:0.32, T:0.28
Consensus pattern (27 bp):
ATATAAATGTGATTGGGCTGATGGGCC
Found at i:51278740 original size:57 final size:57
Alignment explanation
Indices: 51278618--51278743 Score: 141
Period size: 57 Copynumber: 2.2 Consensus size: 57
51278608 ATTTGGGCTG
* *
51278618 GATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAATGTGAATTAGGCCT
1 GATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATAAATGAGAATTAGGCCT
* * * * *
51278675 GATAGGCCATATGAATGTGAGTTGGGCC-AGATGGGCTATATAAATGAG-ATTGGGCCT
1 GATGGGCCATATAAATGAGA-TTGGGCCTA-ATGGGCCATATAAATGAGAATTAGGCCT
51278732 -AGTGGGCCATAT
1 GA-TGGGCCATAT
51278744 TCATGTATGT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
56 1 0.02
57 35 0.60
58 22 0.38
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.26
Consensus pattern (57 bp):
GATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATAAATGAGAATTAGGCCT
Found at i:51279957 original size:24 final size:24
Alignment explanation
Indices: 51279916--51279977 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
51279906 TGTAGCTTAT
* *
51279916 AAGAGCCATAATCAGGAAGTTCT-CA
1 AAGAACCAT-ATCGGGAAGTT-TACA
*
51279941 AAGAACCTTATCGGGAAGTTTACA
1 AAGAACCATATCGGGAAGTTTACA
51279965 AAGAACCATATCG
1 AAGAACCATATCG
51279978 AGAAACTCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 1 0.03
24 24 0.75
25 7 0.22
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (24 bp):
AAGAACCATATCGGGAAGTTTACA
Found at i:51288543 original size:30 final size:30
Alignment explanation
Indices: 51288509--51288595 Score: 108
Period size: 30 Copynumber: 3.0 Consensus size: 30
51288499 TGAACCCTCA
*
51288509 AGTGATAAAATGTCAATTTTTCCCTTATGT
1 AGTGATAAAATGTCAATTTTGCCCTTATGT
*
51288539 AGTGATAAAATGTCGATTTTGCCCTTA--T
1 AGTGATAAAATGTCAATTTTGCCCTTATGT
* * *
51288567 -GTGATAAAATGACGATTTTGCCCTCATGT
1 AGTGATAAAATGTCAATTTTGCCCTTATGT
51288596 GATAAAATGA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
27 24 0.47
28 1 0.02
29 1 0.02
30 25 0.49
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (30 bp):
AGTGATAAAATGTCAATTTTGCCCTTATGT
Found at i:51288582 original size:27 final size:27
Alignment explanation
Indices: 51288510--51288660 Score: 167
Period size: 27 Copynumber: 5.5 Consensus size: 27
51288500 GAACCCTCAA
* * *
51288510 GTGATAAAATGTCAATTTTTCCCTTATGT
1 GTGATAAAATGACGATTTTGCCCTTA--T
*
51288539 AGTGATAAAATGTCGATTTTGCCCTTAT
1 -GTGATAAAATGACGATTTTGCCCTTAT
*
51288567 GTGATAAAATGACGATTTTGCCCTCAT
1 GTGATAAAATGACGATTTTGCCCTTAT
* * *
51288594 GTGATAAAATGACGATTTTACCATTCT
1 GTGATAAAATGACGATTTTGCCCTTAT
* * *
51288621 ATGATAAAATTATGATTTTGCCCTTAT
1 GTGATAAAATGACGATTTTGCCCTTAT
*
51288648 GTGGTAAAATGAC
1 GTGATAAAATGAC
51288661 AGAAATACCC
Statistics
Matches: 103, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
27 78 0.76
28 1 0.01
30 24 0.23
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (27 bp):
GTGATAAAATGACGATTTTGCCCTTAT
Found at i:51288683 original size:54 final size:54
Alignment explanation
Indices: 51288569--51288687 Score: 132
Period size: 54 Copynumber: 2.2 Consensus size: 54
51288559 GCCCTTATGT
** * *
51288569 GATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATTTTACCATTCTAT
1 GATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATAATACCATTATAG
* * * * *
51288623 GATAAAATTATGATTTTGCCCTTATGTGGTAAAATGACAGA-AATACCCTTATAG
1 GATAAAATGACGATTTTGCCCTCATGTGATAAAATGAC-GATAATACCATTATAG
*
51288677 GGTAAAATGAC
1 GATAAAATGAC
51288688 CGAAATACCC
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
54 50 0.96
55 2 0.04
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (54 bp):
GATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATAATACCATTATAG
Found at i:51288769 original size:27 final size:27
Alignment explanation
Indices: 51288650--51288769 Score: 134
Period size: 27 Copynumber: 4.4 Consensus size: 27
51288640 GCCCTTATGT
* *
51288650 GGTAAAATGACAGAAATACCCTTATAG
1 GGTAAAATGACTGAAATACCCCTATAG
* *
51288677 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCTATAG
* *
51288704 GGTAGAATGACTGAAATACCCCTGTAG
1 GGTAAAATGACTGAAATACCCCTATAG
* * * *
51288731 GGTCAAATGACTGTAATA-CCTTAGTAA
1 GGTAAAATGACTGAAATACCCCTA-TAG
51288758 GGTAAAATGACT
1 GGTAAAATGACT
51288770 AATTTGCTCT
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 3 0.04
27 75 0.96
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACTGAAATACCCCTATAG
Found at i:51293370 original size:27 final size:27
Alignment explanation
Indices: 51293340--51293694 Score: 257
Period size: 27 Copynumber: 13.1 Consensus size: 27
51293330 TTTAGGGAAG
* * *
51293340 AATTACTGAAATACCATTGGTTTATAA
1 AATTACTGAAATACCCTTGATTTGTAA
** * *
51293367 AATTACCAAAATACCCTCGGTTTGTAA
1 AATTACTGAAATACCCTTGATTTGTAA
* ** *
51293394 AATTTCCAAAATACCCCT-AGTTTGTAA
1 AATTACTGAAATACCCTTGA-TTTGTAA
** * *
51293421 AATTACCAAAATACCCCTGATTTGTGA
1 AATTACTGAAATACCCTTGATTTGTAA
**
51293448 AATTACTGAAATACTCC-TGATTTGTGC
1 AATTACTGAAATAC-CCTTGATTTGTAA
* * ** *
51293475 AATTACTGAAATATCCTCGACCTATAA
1 AATTACTGAAATACCCTTGATTTGTAA
* *
51293502 AATTACTGAAATA-CCTTCAACTTGTAA
1 AATTACTGAAATACCCTT-GATTTGTAA
* *
51293529 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACTGAAATACCCTTGATTTGTAA
* * *
51293556 AATTACAGAAATACCCCTGATTTGGAA
1 AATTACTGAAATACCCTTGATTTGTAA
** *
51293583 AATTACCAAAATACCCTTGATTTGGAA
1 AATTACTGAAATACCCTTGATTTGTAA
* * **
51293610 AATTACAGAAATACCCTTAATTTACAA
1 AATTACTGAAATACCCTTGATTTGTAA
* **
51293637 AATTACAGAAATACCCTTGACTTTCAAA
1 AATTACTGAAATACCCTTGA-TTTGTAA
** * **
51293665 AATTACAAAAATACCATTGGCTTGTAA
1 AATTACTGAAATACCCTTGATTTGTAA
51293692 AAT
1 AAT
51293695 ACCCTTGGTC
Statistics
Matches: 272, Mismatches: 49, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
26 5 0.02
27 239 0.88
28 28 0.10
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGATTTGTAA
Found at i:51293868 original size:14 final size:14
Alignment explanation
Indices: 51293851--51293898 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
51293841 AATGTATGAC
51293851 TGTGATTGGATTGT
1 TGTGATTGGATTGT
* *
51293865 TGTGACTGTGA-TGAC
1 TGTGATTG-GATTG-T
51293880 TGTGATTGGATTGT
1 TGTGATTGGATTGT
51293894 TGTGA
1 TGTGA
51293899 CTGTGATTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.17, C:0.04, G:0.35, T:0.44
Consensus pattern (14 bp):
TGTGATTGGATTGT
Found at i:51293888 original size:29 final size:29
Alignment explanation
Indices: 51293846--51293905 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
51293836 CTGAGAATGT
51293846 ATGACTGTGATTGGATTGTTGTGACTGTG
1 ATGACTGTGATTGGATTGTTGTGACTGTG
51293875 ATGACTGTGATTGGATTGTTGTGACTGTG
1 ATGACTGTGATTGGATTGTTGTGACTGTG
51293904 AT
1 AT
51293906 TTGTATGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.18, C:0.07, G:0.33, T:0.42
Consensus pattern (29 bp):
ATGACTGTGATTGGATTGTTGTGACTGTG
Found at i:51294042 original size:41 final size:41
Alignment explanation
Indices: 51293995--51294117 Score: 174
Period size: 41 Copynumber: 3.0 Consensus size: 41
51293985 GGAGGAAGAA
*
51293995 ATTGAGGATCACATGGTTGCTTGACAATTGTGGATCCACCG
1 ATTGAGGATCACATGGTTGCTTGACAATCGTGGATCCACCG
* **
51294036 ATTGAGGATCGCATGGTTGCTTGATGATCGTGGATCCACCG
1 ATTGAGGATCACATGGTTGCTTGACAATCGTGGATCCACCG
* * * *
51294077 ATTAAGGATCACATGGTTGCTTGACGACCGTGGATCTACCG
1 ATTGAGGATCACATGGTTGCTTGACAATCGTGGATCCACCG
51294118 GTGGCTTTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCACATGGTTGCTTGACAATCGTGGATCCACCG
Found at i:51296473 original size:39 final size:39
Alignment explanation
Indices: 51296419--51296541 Score: 228
Period size: 39 Copynumber: 3.2 Consensus size: 39
51296409 ACTCAGTGAT
* *
51296419 GAATTATATCCGGACTTAAGGTCCACAGGCTATATGCTG
1 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
51296458 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
1 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
51296497 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
1 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
51296536 GAATTA
1 GAATTA
51296542 CATCCGGGCT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (39 bp):
GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
Found at i:51296548 original size:39 final size:39
Alignment explanation
Indices: 51296419--51296566 Score: 226
Period size: 39 Copynumber: 3.8 Consensus size: 39
51296409 ACTCAGTGAT
*
51296419 GAATTATATCCGGACTTAAGGTCCACAGGCTATATGCTG
1 GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGCTG
*
51296458 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
1 GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGCTG
*
51296497 GAATTATGTCCGGACTTAAGGTCCGCAGGCTATATGCTG
1 GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGCTG
* * *
51296536 GAATTACATCCGGGC-TAAAGTCCCGCAGGCT
1 GAATTATATCCGGACTTAAGGT-CCGCAGGCT
51296567 TCGAGCTGGT
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 5 0.05
39 97 0.95
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGCTG
Found at i:51296575 original size:39 final size:39
Alignment explanation
Indices: 51296532--51296606 Score: 89
Period size: 39 Copynumber: 1.9 Consensus size: 39
51296522 CAGGCTATAT
51296532 GCTGGAATTACATCCGGG-CTAAAGTCCCGCAGGCTTCGA
1 GCTGGAATTACA-CCGGGTCTAAAGTCCCGCAGGCTTCGA
* * * * *
51296571 GCTGGTATTATACCGGGTTTAAATTCTCGCAGGCTT
1 GCTGGAATTACACCGGGTCTAAAGTCCCGCAGGCTT
51296607 GTGCTGGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
38 5 0.17
39 25 0.83
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (39 bp):
GCTGGAATTACACCGGGTCTAAAGTCCCGCAGGCTTCGA
Found at i:51297347 original size:22 final size:22
Alignment explanation
Indices: 51297314--51297378 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
51297304 GCCAATTATT
* *
51297314 CTGATTATGGCTTTGTGCCAAC
1 CTGAATATGGCTCTGTGCCAAC
51297336 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-ATATGGCTCTGTGCCAAC
* *
51297358 CTGATTATGGCTGTGTGCCAA
1 CTGAATATGGCTCTGTGCCAA
51297379 ATGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGAATATGGCTCTGTGCCAAC
Found at i:51301606 original size:40 final size:40
Alignment explanation
Indices: 51301549--51301635 Score: 129
Period size: 40 Copynumber: 2.1 Consensus size: 40
51301539 TGAACTTTAA
51301549 TTTATTTAAACTAATCTTAGTTAATAATTGAGTTGCTGGAC
1 TTTA-TTAAACTAATCTTAGTTAATAATTGAGTTGCTGGAC
* * * *
51301590 TTTATTAAACTCATCTTAGTTAATTATTGATTTGTTGGAC
1 TTTATTAAACTAATCTTAGTTAATAATTGAGTTGCTGGAC
51301630 TTTATT
1 TTTATT
51301636 TTTATTAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 38 0.90
41 4 0.10
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.49
Consensus pattern (40 bp):
TTTATTAAACTAATCTTAGTTAATAATTGAGTTGCTGGAC
Found at i:51304002 original size:46 final size:48
Alignment explanation
Indices: 51303898--51304017 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
51303888 TGTCTTCGAC
** * *
51303898 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
51303946 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
51303992 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
51304018 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 27 0.43
47 1 0.02
48 35 0.56
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:51305889 original size:21 final size:20
Alignment explanation
Indices: 51305865--51305903 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
51305855 TTGTAAATCT
51305865 AGTAACATAATTGTTATTTTA
1 AGTAACATAA-TGTTATTTTA
**
51305886 AGTAATTTAATGTTATTT
1 AGTAACATAATGTTATTT
51305904 ATATGATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (20 bp):
AGTAACATAATGTTATTTTA
Found at i:51317620 original size:24 final size:23
Alignment explanation
Indices: 51317593--51317663 Score: 76
Period size: 24 Copynumber: 3.1 Consensus size: 23
51317583 ATGTGGCTGT
*
51317593 TACATTACTTAAAGAAGAGCATTA
1 TACATCACTTAAAG-AGAGCATTA
51317617 TACATCACTTAAAG-GAGC-TGT-
1 TACATCACTTAAAGAGAGCAT-TA
*
51317638 TACATCATTTAAAGGAGAGCATTA
1 TACATCACTTAAA-GAGAGCATTA
51317662 TA
1 TA
51317664 TATCCTTTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
21 13 0.32
22 6 0.15
23 5 0.12
24 16 0.40
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (23 bp):
TACATCACTTAAAGAGAGCATTA
Found at i:51317643 original size:21 final size:21
Alignment explanation
Indices: 51317588--51317654 Score: 73
Period size: 21 Copynumber: 3.0 Consensus size: 21
51317578 TGTTAATGTG
*
51317588 GCTGTTACATTACTTAAAGAAGA
1 GCTGTTACATCACTTAAAG--GA
51317611 GCAT-TATACATCACTTAAAGGA
1 GC-TGT-TACATCACTTAAAGGA
*
51317633 GCTGTTACATCATTTAAAGGA
1 GCTGTTACATCACTTAAAGGA
51317654 G
1 G
51317655 AGCATTATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
21 17 0.44
22 5 0.13
23 3 0.08
24 14 0.36
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (21 bp):
GCTGTTACATCACTTAAAGGA
Found at i:51318308 original size:24 final size:25
Alignment explanation
Indices: 51318275--51318326 Score: 97
Period size: 24 Copynumber: 2.1 Consensus size: 25
51318265 ATTCTCAGTC
51318275 TTAGCCAAATTATCCTTTATTTATT
1 TTAGCCAAATTATCCTTTATTTATT
51318300 TTAG-CAAATTATCCTTTATTTATT
1 TTAGCCAAATTATCCTTTATTTATT
51318324 TTA
1 TTA
51318327 CCTATTTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.29, C:0.13, G:0.04, T:0.54
Consensus pattern (25 bp):
TTAGCCAAATTATCCTTTATTTATT
Found at i:51323436 original size:40 final size:40
Alignment explanation
Indices: 51323376--51323462 Score: 120
Period size: 40 Copynumber: 2.1 Consensus size: 40
51323366 TAAACTCTAA
* *
51323376 TTTATTTAAACTCATGTTAGTTAATAATTGAGTTGCTAGAC
1 TTTA-TTAAACTCATCTTAGTTAATAATTGAGTTGATAGAC
* * *
51323417 TTTATTAAACTCATCTTAGTTAATTATTGATTTGATGGAC
1 TTTATTAAACTCATCTTAGTTAATAATTGAGTTGATAGAC
51323457 TTTATT
1 TTTATT
51323463 TCTTATTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 37 0.90
41 4 0.10
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.48
Consensus pattern (40 bp):
TTTATTAAACTCATCTTAGTTAATAATTGAGTTGATAGAC
Found at i:51334309 original size:40 final size:40
Alignment explanation
Indices: 51334230--51334406 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
51334220 CGGATGATAA
* *
51334230 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
51334270 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
* *
51334310 CCGAGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
51334350 CCGGGCTAAGACCCGAGGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
51334390 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
51334407 ATACTTGGGT
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 98 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:51334371 original size:80 final size:79
Alignment explanation
Indices: 51334230--51334406 Score: 243
Period size: 80 Copynumber: 2.2 Consensus size: 79
51334220 CGGATGATAA
* *
51334230 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGG-CTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
51334295 TGCTAG-TGATTATAT
65 TGCGAGTTG-TTATAT
*
51334310 CCGAGCTAAGA-CCTGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAGGGCATTT
1 CCG-GCTAAGATCC-GAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTT
*
51334374 GTGCGAGTTGTTATAT
64 ATGCGAGTTGTTATAT
51334390 CCGGCTAA-ATCCCGAAG
1 CCGGCTAAGAT-CCGAAG
51334407 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
78 1 0.01
79 11 0.13
80 72 0.83
81 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGCTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTAT
GCGAGTTGTTATAT
Found at i:51336647 original size:40 final size:40
Alignment explanation
Indices: 51336553--51336697 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
51336543 TACTCGAATG
*
51336553 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
51336594 ACATCCGGACTAAGAT-CTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
51336634 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
51336674 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
51336698 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:51344673 original size:40 final size:40
Alignment explanation
Indices: 51344579--51344723 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
51344569 TACTCGAATG
*
51344579 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
51344620 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
51344660 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
51344700 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
51344724 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:51347285 original size:51 final size:51
Alignment explanation
Indices: 51347225--51347380 Score: 285
Period size: 51 Copynumber: 3.1 Consensus size: 51
51347215 ATTGATGTGT
*
51347225 TATATGTTCTGTAAAAGTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
1 TATATGTTCTGTAAATGTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
51347276 TATATGTTCTGTAAATGTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
1 TATATGTTCTGTAAATGTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
* *
51347327 TATGTGTTCTGTAAATTTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
1 TATATGTTCTGTAAATGTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
51347378 TAT
1 TAT
51347381 GTGGTGAATG
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 102 1.00
ACGTcount: A:0.28, C:0.04, G:0.15, T:0.53
Consensus pattern (51 bp):
TATATGTTCTGTAAATGTTTTAAAATTGTTTGGATTATGTTTTATTTAAGC
Found at i:51369531 original size:33 final size:34
Alignment explanation
Indices: 51369471--51369537 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
51369461 CAGTTCAACC
* *
51369471 TCAGTTAGGGCCTTAGCCCAATACAGTAATAGTA
1 TCAGTGAGGGCCTTAGCCCAATACAGTAACAGTA
*
51369505 TCAGTGAGGG-CTTAGCCC-ATCTCAGTAACAGTA
1 TCAGTGAGGGCCTTAGCCCAAT-ACAGTAACAGTA
51369538 ATAGAAATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 2 0.07
33 18 0.62
34 9 0.31
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (34 bp):
TCAGTGAGGGCCTTAGCCCAATACAGTAACAGTA
Found at i:51369832 original size:26 final size:27
Alignment explanation
Indices: 51369803--51369861 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 27
51369793 CATGCTCAAA
*
51369803 CAGTCATACATCACATAGGGGTAT-AT
1 CAGTCATACACCACATAGGGGTATAAT
** *
51369829 CAGTCATTTACCTCATAGGGGTATAAT
1 CAGTCATACACCACATAGGGGTATAAT
51369856 -AGTCAT
1 CAGTCAT
51369862 TTCATCAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Consensus pattern (27 bp):
CAGTCATACACCACATAGGGGTATAAT
Found at i:51371173 original size:14 final size:15
Alignment explanation
Indices: 51371144--51371176 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
51371134 AGAAAGATAA
*
51371144 AAAATGACCAAAAAC
1 AAAACGACCAAAAAC
51371159 AAAACGACC-AAAAC
1 AAAACGACCAAAAAC
51371173 AAAA
1 AAAA
51371177 AGGTTGCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.70, C:0.21, G:0.06, T:0.03
Consensus pattern (15 bp):
AAAACGACCAAAAAC
Found at i:51378149 original size:26 final size:26
Alignment explanation
Indices: 51378087--51378150 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 26
51378077 TTTGGCAATT
*
51378087 CTTTTGAAAAATGATTTTGAAAAGTG
1 CTTTTGAAAAGTGATTTTGAAAAGTG
* * * *
51378113 CTGTGGCAAAGTGCTTTTGAGAAA-TG
1 CTTTTGAAAAGTGATTTTGA-AAAGTG
51378139 CTTTTGAAAAGT
1 CTTTTGAAAAGT
51378151 TTGGCTTAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
CTTTTGAAAAGTGATTTTGAAAAGTG
Found at i:51378373 original size:31 final size:29
Alignment explanation
Indices: 51378323--51378381 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
51378313 TAACTTGTTG
51378323 TAAATATTTTAATATATAAAATATAAATTT
1 TAAATATTTTAATATAT-AAATATAAATTT
*
51378353 TAAATATTTTTAAGTA-ATAAATATTAATT
1 TAAATA-TTTTAA-TATATAAATATAAATT
51378382 ACTTATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 16 0.62
31 8 0.31
32 2 0.08
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (29 bp):
TAAATATTTTAATATATAAATATAAATTT
Found at i:51381509 original size:12 final size:12
Alignment explanation
Indices: 51381492--51381521 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
51381482 AGTGCATATA
51381492 TGCTTGGTTTGG
1 TGCTTGGTTTGG
51381504 TGCTTGGTTTGG
1 TGCTTGGTTTGG
51381516 TGCTTG
1 TGCTTG
51381522 TAGGTTTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.10, G:0.40, T:0.50
Consensus pattern (12 bp):
TGCTTGGTTTGG
Found at i:51385549 original size:34 final size:34
Alignment explanation
Indices: 51385511--51385610 Score: 146
Period size: 34 Copynumber: 2.9 Consensus size: 34
51385501 GTCTCAATGA
* *
51385511 GGGCCTTAGACCATTTTAGTAACAGTAGTAGTCT
1 GGGCCTAAGCCCATTTTAGTAACAGTAGTAGTCT
* *
51385545 GGGCCTAAGCCCATTTTAGTAATAGTAGCAGTCT
1 GGGCCTAAGCCCATTTTAGTAACAGTAGTAGTCT
* *
51385579 GGGCCTGAGCCCATTTTAGTAACAGTATTAGT
1 GGGCCTAAGCCCATTTTAGTAACAGTAGTAGT
51385611 ATAGTATGCA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 58 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTTAGTAACAGTAGTAGTCT
Found at i:51397627 original size:46 final size:45
Alignment explanation
Indices: 51397560--51397726 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 45
51397550 TACCCCTAAG
* *
51397560 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTT-GCATCCATAAA
* * *
51397606 TGAACTCGGACTCAACTCAACGAGTTCGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCG--GAC--GTTGCATCCATAAA
* * *
51397652 -CAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGAC-GTTGCATCCATAAA
51397697 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
51397727 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 11, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
42 6 0.06
43 3 0.03
44 1 0.01
45 26 0.25
46 56 0.55
47 1 0.01
48 3 0.03
49 3 0.03
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACGTTGCATCCATAAA
Found at i:51397717 original size:91 final size:92
Alignment explanation
Indices: 51397562--51397729 Score: 284
Period size: 91 Copynumber: 1.8 Consensus size: 92
51397552 CCCCTAAGTG
* *
51397562 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
51397627 GAGTTC-GATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* * *
51397653 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
51397718 GAGTTCGGATGC
66 GAGTTCGGATGC
51397730 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
91 66 0.93
92 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (92 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51401088 original size:54 final size:54
Alignment explanation
Indices: 51400971--51401146 Score: 180
Period size: 54 Copynumber: 3.3 Consensus size: 54
51400961 GAATACTTTA
* * * *
51400971 GTTTACCAAATTACTGAAATATCCTC-AGTTGTAAAATTA-CCAAAGTACCCTC
1 GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAAGTACCCTC
* * * *
51401023 GGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTATCGAAA-TACCCTC
1 -GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAAGTACCCTC
* ** * *
51401077 AGTTTGCAAAATTATTGAAATACCCTCGACATGTAAAATTAT-AAAAGTACCCTC
1 -GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAAGTACCCTC
51401131 GATTTACAAAATTACC
1 G-TTTACAAAATTACC
51401147 ATTTTACCCT
Statistics
Matches: 100, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
53 26 0.26
54 70 0.70
55 4 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAAGTACCCTC
Found at i:51401114 original size:27 final size:27
Alignment explanation
Indices: 51400978--51401144 Score: 117
Period size: 27 Copynumber: 6.2 Consensus size: 27
51400968 TTAGTTTACC
* * *
51400978 AAATTACTGAAATATCCTC-AGTTGTA
1 AAATTATTGAAATACCCTCGATTTGTA
** * *
51401004 AAATTA-CCAAAGTACCCTCGGTTTATA
1 AAATTATTGAAA-TACCCTCGATTTGTA
*** *
51401031 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTATTGAAATACCCTCGATTTGTA
* *
51401058 AAATTATCGAAATACCCTC-AGTTTGCA
1 AAATTATTGAAATACCCTCGA-TTTGTA
**
51401085 AAATTATTGAAATACCCTCGACATGTA
1 AAATTATTGAAATACCCTCGATTTGTA
* **
51401112 AAATTA-TAAAAGTACCCTCGATTTACA
1 AAATTATTGAAA-TACCCTCGATTTGTA
51401139 AAATTA
1 AAATTA
51401145 CCATTTTACC
Statistics
Matches: 113, Mismatches: 22, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
25 3 0.03
26 17 0.15
27 87 0.77
28 6 0.05
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTATTGAAATACCCTCGATTTGTA
Found at i:51401154 original size:27 final size:27
Alignment explanation
Indices: 51401124--51401296 Score: 229
Period size: 27 Copynumber: 6.4 Consensus size: 27
51401114 ATTATAAAAG
*
51401124 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
51401151 TACCCTCAATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
51401178 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
51401205 TACCCTCGATTTATAGAGTTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
51401232 TACCCTTGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
51401259 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
51401286 TACCCTCGATT
1 TACCCTCGATT
51401297 GTGAAATTAC
Statistics
Matches: 125, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:51401155 original size:54 final size:55
Alignment explanation
Indices: 51401097--51401213 Score: 141
Period size: 54 Copynumber: 2.2 Consensus size: 55
51401087 ATTATTGAAA
51401097 TACCCTCGACATGTA-A-AATTATAAAAGTACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGA-ATGTACAGAATTATAAAAGTACCCTCGATTTACAAAATTACCATTT
* ***** *
51401151 TACCCTC-AATTTACAGAATTATTGTTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGAATGTACAGAATTATAAAAGTACCCTCGATTTACAAAATTACCATTT
51401205 TACCCTCGA
1 TACCCTCGA
51401214 TTTATAGAGT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
52 4 0.08
53 2 0.04
54 46 0.87
55 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (55 bp):
TACCCTCGAATGTACAGAATTATAAAAGTACCCTCGATTTACAAAATTACCATTT
Found at i:51401331 original size:27 final size:27
Alignment explanation
Indices: 51401301--51401709 Score: 472
Period size: 27 Copynumber: 15.2 Consensus size: 27
51401291 TCGATTGTGA
*
51401301 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * ** *
51401328 AATTAC-CAAA-ACACCTTTATTTTGTAA
1 AATTACTGAAATACCCCTGTA--GGGTAG
** *
51401355 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
51401382 AATTACTAAAATA-CCCTAGTAAGGTAG
1 AATTACTGAAATACCCCT-GTAGGGTAG
* *
51401409 AATTACCG-AATACCTCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
51401435 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
51401462 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
51401489 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
51401516 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
51401543 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
51401570 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
51401597 AATTA-TCGCAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
51401624 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
51401651 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
51401678 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
51401704 AATTAC
1 AATTAC
51401710 CATTTTGCCC
Statistics
Matches: 328, Mismatches: 43, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
25 7 0.02
26 43 0.13
27 268 0.82
28 4 0.01
29 6 0.02
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:51401989 original size:27 final size:26
Alignment explanation
Indices: 51401951--51402002 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
51401941 CTCGCTGTAA
*
51401951 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
51401978 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
51402003 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:51402040 original size:67 final size:67
Alignment explanation
Indices: 51401932--51402085 Score: 281
Period size: 67 Copynumber: 2.3 Consensus size: 67
51401922 GAGGAAGCGT
* *
51401932 TCTGGCAGCCTCGCTGTAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTATTCTGGTGACTTCGTCACAA
51401997 TA
66 TA
*
51401999 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTATTTTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTATTCTGGTGACTTCGTCACAA
51402064 TA
66 TA
51402066 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
51402086 TTCTGTGGTG
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 84 1.00
ACGTcount: A:0.18, C:0.28, G:0.22, T:0.32
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTATTCTGGTGACTTCGTCACAA
TA
Found at i:51402197 original size:6 final size:6
Alignment explanation
Indices: 51402188--51402346 Score: 137
Period size: 6 Copynumber: 25.8 Consensus size: 6
51402178 TTGCATTCAC
* *
51402188 ATTCTA ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * * *
51402237 -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG ATTATG -TTACCTG ATACTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * *
51402287 ATTCTG ATTCTG GTTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
51402336 ATTCTG ATTCT
1 ATTCTG ATTCT
51402347 AGTTATGATA
Statistics
Matches: 124, Mismatches: 17, Indels: 24
0.75 0.10 0.15
Matches are distributed among these distances:
5 7 0.06
6 102 0.82
7 10 0.08
8 5 0.04
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:51402225 original size:25 final size:25
Alignment explanation
Indices: 51402194--51402341 Score: 124
Period size: 25 Copynumber: 5.7 Consensus size: 25
51402184 TCACATTCTA
51402194 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
* *
51402219 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTG
*
51402244 ATTCTGATTCTGGTTCTGATT--CTG
1 ATTCTGATTCTGATTCTG-TTACCTG
*
51402268 ATTATGTTACCTGATACTGATTCTGATT--CTG
1 ---A--TT--CTGATTCTGATTCTG-TTACCTG
* * *
51402299 GTTCTGATTTTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
51402324 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
51402342 ATTCTAGTTA
Statistics
Matches: 100, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
23 1 0.01
24 15 0.15
25 58 0.58
26 4 0.04
27 1 0.01
29 2 0.02
31 19 0.19
ACGTcount: A:0.18, C:0.18, G:0.17, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTG
Found at i:51402229 original size:31 final size:31
Alignment explanation
Indices: 51402194--51402304 Score: 129
Period size: 31 Copynumber: 3.6 Consensus size: 31
51402184 TCACATTCTA
51402194 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
51402225 ATTCTGATTCTG-TTACCTAATT--CTGATTCTG
1 ATTCTGATTCTGATT--CT-GTTACCTGATACTG
* *
51402256 GTTCTGATTCTGATTATGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
51402287 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
51402305 ATTTTGATTC
Statistics
Matches: 65, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
29 2 0.03
30 3 0.05
31 54 0.83
32 4 0.06
33 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.17, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:51402263 original size:37 final size:37
Alignment explanation
Indices: 51402222--51402346 Score: 151
Period size: 37 Copynumber: 3.2 Consensus size: 37
51402212 TTACCTGATA
51402222 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
1 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
*
51402259 CTGATTCTGATTATGTTACCTGATACTGATTCTGATTCTGGTT
1 CTGATTCTGATTCTGTTACC---TA---ATTCTGATTCTGGTT
* * * *
51402302 CTGATTTTGATTCTGTCACCTGATTCTGATTCTGATT
1 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
51402339 CTGATTCT
1 CTGATTCT
51402347 AGTTATGATA
Statistics
Matches: 75, Mismatches: 7, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
37 40 0.53
40 3 0.04
43 32 0.43
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
Found at i:51402269 original size:43 final size:42
Alignment explanation
Indices: 51402197--51402346 Score: 168
Period size: 43 Copynumber: 3.6 Consensus size: 42
51402187 CATTCTAATT
*
51402197 CTGATTCTGATTCTG-TTACCTGATACTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGATT--CTGATTCTGATT-TGATTCTGTTAC
* *
51402241 CTAATTCTGATTCTGGTTCTGATTCTGA-TT-A---TGTTAC
1 CTGATTCTGATTCTGATTCTGATTCTGATTTGATTCTGTTAC
* * *
51402278 CTGATACTGATTCTGATTCTGGTTCTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGATTCTGA-TTTGATTCTGTTAC
51402321 CTGATTCTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCTGATTCT
51402347 AGTTATGATA
Statistics
Matches: 90, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
37 30 0.33
39 2 0.02
40 2 0.02
41 1 0.01
42 1 0.01
43 38 0.42
44 14 0.16
45 2 0.02
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.47
Consensus pattern (42 bp):
CTGATTCTGATTCTGATTCTGATTCTGATTTGATTCTGTTAC
Found at i:51402355 original size:18 final size:18
Alignment explanation
Indices: 51402188--51402344 Score: 97
Period size: 19 Copynumber: 8.5 Consensus size: 18
51402178 TTGCATTCAC
* *
51402188 ATTCTAATTCTGATTCTG
1 ATTCTGATTATGATTCTG
*
51402206 ATTCTG-TTACCTGATACTG
1 ATTCTGATTA--TGATTCTG
* *
51402225 ATTCTGATTCTG-TTACCTA
1 ATTCTGATTATGATT--CTG
* *
51402244 ATTCTGATTCTGGTTCTG
1 ATTCTGATTATGATTCTG
51402262 ATTCTGATTATG-TTACCTG
1 ATTCTGATTATGATT--CTG
* *
51402281 ATACTGATTCTGATTCTG
1 ATTCTGATTATGATTCTG
* *
51402299 GTTCTGATTTTGATTCTG
1 ATTCTGATTATGATTCTG
* *
51402317 -TCACCTGATTCTGATTCTG
1 AT--TCTGATTATGATTCTG
51402336 ATTCTGATT
1 ATTCTGATT
51402345 CTAGTTATGA
Statistics
Matches: 111, Mismatches: 16, Indels: 24
0.74 0.11 0.16
Matches are distributed among these distances:
17 6 0.05
18 44 0.40
19 54 0.49
20 7 0.06
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (18 bp):
ATTCTGATTATGATTCTG
Found at i:51408119 original size:93 final size:93
Alignment explanation
Indices: 51408008--51408178 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
51407998 GCCCCTAAGT
* * *
51408008 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
51408073 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
51408101 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
51408166 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51408179 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51408175 original size:46 final size:46
Alignment explanation
Indices: 51408003--51408175 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
51407993 AACCCGCCCC
* * * *
51408003 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
51408049 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
51408097 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
51408142 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51408176 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:51411692 original size:31 final size:31
Alignment explanation
Indices: 51411654--51411717 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
51411644 CCTTTTCATA
*
51411654 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
51411685 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
51411716 TT
1 TT
51411718 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:51411953 original size:25 final size:24
Alignment explanation
Indices: 51411909--51412128 Score: 268
Period size: 25 Copynumber: 9.0 Consensus size: 24
51411899 CTGCTTTATC
*
51411909 ATATAACTGGAGGCCT-AGCCTCTTT
1 ATATAACTGG-GGCATAAGCC-CTTT
*
51411934 -TAGTAACTGGGGCAAAAGCCCTTT
1 ATA-TAACTGGGGCATAAGCCCTTT
*
51411958 TTATAA-TGGGGCATAAGCCCTTT
1 ATATAACTGGGGCATAAGCCCTTT
*
51411981 ATCGTAACTGGGGCATAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
*
51412006 ATCATAACTAGGGCATAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
*
51412031 ATCGTAACTGGGGCATAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
*
51412056 ATCATAACTAGGGCATAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
51412081 ATCATAACTGGGGCATAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
*
51412106 A-ATAACTAGGGCATAAGCCCTTT
1 ATATAACTGGGGCATAAGCCCTTT
51412129 TGCACTTCCT
Statistics
Matches: 177, Mismatches: 13, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
23 38 0.21
24 15 0.08
25 124 0.70
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (24 bp):
ATATAACTGGGGCATAAGCCCTTT
Found at i:51412036 original size:50 final size:50
Alignment explanation
Indices: 51411936--51412128 Score: 322
Period size: 50 Copynumber: 3.9 Consensus size: 50
51411926 GCCTCTTTTA
* * *
51411936 GTAACTGGGGCAAAAGCCCTTT-TTATAA-TGGGGCATAAGCCCTTTATC
1 GTAACTGGGGCATAAGCCCTTTATCATAACTAGGGCATAAGCCCTTTATC
51411984 GTAACTGGGGCATAAGCCCTTTATCATAACTAGGGCATAAGCCCTTTATC
1 GTAACTGGGGCATAAGCCCTTTATCATAACTAGGGCATAAGCCCTTTATC
51412034 GTAACTGGGGCATAAGCCCTTTATCATAACTAGGGCATAAGCCCTTTATC
1 GTAACTGGGGCATAAGCCCTTTATCATAACTAGGGCATAAGCCCTTTATC
*
51412084 ATAACTGGGGCATAAGCCCTTTA--ATAACTAGGGCATAAGCCCTTT
1 GTAACTGGGGCATAAGCCCTTTATCATAACTAGGGCATAAGCCCTTT
51412129 TGCACTTCCT
Statistics
Matches: 139, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
48 43 0.31
49 5 0.04
50 91 0.65
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (50 bp):
GTAACTGGGGCATAAGCCCTTTATCATAACTAGGGCATAAGCCCTTTATC
Found at i:51412057 original size:75 final size:74
Alignment explanation
Indices: 51411937--51412128 Score: 298
Period size: 75 Copynumber: 2.6 Consensus size: 74
51411927 CCTCTTTTAG
* * * *
51411937 TAACTGGGGCAAAAGCCCTTTTTATAA-TGGGGCATAAGCCCTTTATCGTAACTGGGGCATAAGC
1 TAACTGGGGCATAAGCCCTTTATATAACTGGGGCATAAGCCCTTTATCATAACTAGGGCATAAGC
51412001 CCTTTATCA
66 CCTTTATCA
* *
51412010 TAACTAGGGCATAAGCCCTTTATCGTAACTGGGGCATAAGCCCTTTATCATAACTAGGGCATAAG
1 TAACTGGGGCATAAGCCCTTTAT-ATAACTGGGGCATAAGCCCTTTATCATAACTAGGGCATAAG
51412075 CCCTTTATCA
65 CCCTTTATCA
*
51412085 TAACTGGGGCATAAGCCCTTTA-ATAACTAGGGCATAAGCCCTTT
1 TAACTGGGGCATAAGCCCTTTATATAACTGGGGCATAAGCCCTTT
51412129 TGCACTTCCT
Statistics
Matches: 108, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
73 40 0.37
74 3 0.03
75 65 0.60
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (74 bp):
TAACTGGGGCATAAGCCCTTTATATAACTGGGGCATAAGCCCTTTATCATAACTAGGGCATAAGC
CCTTTATCA
Found at i:51412202 original size:20 final size:20
Alignment explanation
Indices: 51412174--51412244 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
51412164 GCATTTCTGA
*
51412174 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
51412194 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* * *
51412214 ACATGTCTTGTGCATATTAT
1 ACATATCATGTGCATATCAT
51412234 ACATATCATGT
1 ACATATCATGT
51412245 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:51413586 original size:27 final size:27
Alignment explanation
Indices: 51413486--51413569 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
51413476 GGGCATATTC
* *
51413486 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
51413513 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
51413540 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
51413567 GTC
1 GTC
51413570 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:51413679 original size:27 final size:27
Alignment explanation
Indices: 51413631--51413682 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
51413621 GTAAATCTAC
*
51413631 AAACCAAAGGTATTTTAGTAATTTTGT
1 AAACCAAAGGTATTTCAGTAATTTTGT
*
51413658 AAACCAATGGTATTTCCA-TAATTTT
1 AAACCAAAGGTATTT-CAGTAATTTT
51413683 TAGAAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCAGTAATTTTGT
Found at i:51413744 original size:27 final size:27
Alignment explanation
Indices: 51413714--51413875 Score: 154
Period size: 27 Copynumber: 6.0 Consensus size: 27
51413704 GTAACTTTGT
51413714 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * * *
51413741 AAAT-TGAGGATATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* *
51413768 AAACCAGTGGTA-TTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
51413794 AAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
*
51413821 AAAT-TGAGGGTATTTCT-GTAATTTTAC
1 AAATCAG-GGGTATTT-TGGTAATTTTAC
* * * *
51413848 AAACCAAGGGTATTTTAGCAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
51413875 A
1 A
51413876 GACTAGGGTA
Statistics
Matches: 110, Mismatches: 16, Indels: 18
0.76 0.11 0.12
Matches are distributed among these distances:
25 1 0.01
26 24 0.22
27 83 0.75
28 2 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:51413792 original size:53 final size:53
Alignment explanation
Indices: 51413721--51413851 Score: 149
Period size: 53 Copynumber: 2.4 Consensus size: 53
51413711 TGTAAATCAG
*
51413721 GGGTATTTTGGTAATTTTACAAA-TTGAGGATATTTCGGTAATTTCACAAA-CCA
1 GGGTA-TTTGGTAATTTTACAAACTAG-GGATATTTCGGTAATTTCACAAATCCA
* * * **
51413774 GTGGTATTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTGGTAATTTTACAAACTAGGGATATTTCGGTAATTTCACAAATCCA
*
51413828 GGGTATTTCTGTAATTTTACAAAC
1 GGGTATTT-GGTAATTTTACAAAC
51413852 CAAGGGTATT
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
53 45 0.67
54 22 0.33
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (53 bp):
GGGTATTTGGTAATTTTACAAACTAGGGATATTTCGGTAATTTCACAAATCCA
Found at i:51413818 original size:80 final size:81
Alignment explanation
Indices: 51413719--51413898 Score: 258
Period size: 80 Copynumber: 2.2 Consensus size: 81
51413709 TTTGTAAATC
51413719 AGGGGTATTTTGGTAATTTTACAAATTGAGGATATTTCGGTAATTTCACAAACC-AGTGGTA-TT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGATATTTCGGTAATTTCACAAACCAAG-GGTATTT
* *
51413782 TGGTAATTTTACAAACT
65 TAGCAATTTTACAAACT
* * *
51413799 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGATATTTCGGTAATTTCACAAACCAAGGGTATTTT
*
51413864 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
* *
51413880 A-GGGTATTCTAGTAATTTT
1 AGGGGTATTTTGGTAATTTT
51413899 GTAAATCGAG
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
80 71 0.79
81 19 0.21
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGATATTTCGGTAATTTCACAAACCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:51413912 original size:53 final size:54
Alignment explanation
Indices: 51413776--51413898 Score: 153
Period size: 54 Copynumber: 2.3 Consensus size: 54
51413766 ACAAACCAGT
* * * * * *
51413776 GGTATTT-GGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCTGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACTGAG
*
51413829 GGTATTTCTGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACT-AG
1 GGTATTTCTGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACTGAG
51413882 GGTA-TTCTAGTAATTTT
1 GGTATTTCT-GTAATTTT
51413899 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
52 4 0.07
53 21 0.34
54 36 0.59
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
GGTATTTCTGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACTGAG
Found at i:51413922 original size:80 final size:80
Alignment explanation
Indices: 51413719--51413939 Score: 194
Period size: 80 Copynumber: 2.8 Consensus size: 80
51413709 TTTGTAAATC
* * * * *** * *
51413719 AGGGGTATTTTGGTAATTTTACAAATTGAGGATATTTCGGTAATTTCACAAACC-AGTGGTATTT
1 AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTTACAAACCAAG-GGTATTT
* *
51413783 GGTAATTTTACAAACT
65 AGCAATTTTACAAACT
* * * *** *
51413799 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTTACAAACCAAGGGTA-TTT
*
51413864 AGCAATTTTACAGACT
65 AGCAATTTTACAAACT
** * * *
51413880 A-GGGTATTCTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTA
1 AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTTACAAACCAAGGGTA
51413940 AAACGATACT
Statistics
Matches: 121, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
80 102 0.84
81 19 0.16
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (80 bp):
AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTTACAAACCAAGGGTATTTA
GCAATTTTACAAACT
Found at i:51414040 original size:52 final size:51
Alignment explanation
Indices: 51413891--51414065 Score: 205
Period size: 52 Copynumber: 3.4 Consensus size: 51
51413881 GGGTATTCTA
** * *
51413891 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACG
1 GTAA-TTTGTAAATCG-GGGTAAAATGGTAATT-TGTAAATCAAGGGTAAAATG
* *
51413945 ATACTTCTGT-AA--GGGGTAAAATGGTAATTTGTAAATCAAGGGTAAAATG
1 GTAATT-TGTAAATCGGGGTAAAATGGTAATTTGTAAATCAAGGGTAAAATG
*
51413994 GTAATTATGTAAATCGGGGTAAAATGGTAATTATGTAAATC-GGGGTAAAATG
1 GTAATT-TGTAAATCGGGGTAAAATGGTAATT-TGTAAATCAAGGGTAAAATG
51414046 GTAATTTGTAAATCGGGGTA
1 GTAATTTGTAAATCGGGGTA
51414066 CTTTGGTAAT
Statistics
Matches: 106, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
49 25 0.24
50 16 0.15
51 15 0.14
52 33 0.31
53 12 0.11
54 5 0.05
ACGTcount: A:0.39, C:0.06, G:0.25, T:0.30
Consensus pattern (51 bp):
GTAATTTGTAAATCGGGGTAAAATGGTAATTTGTAAATCAAGGGTAAAATG
Found at i:51414077 original size:25 final size:25
Alignment explanation
Indices: 51413891--51414065 Score: 185
Period size: 26 Copynumber: 6.8 Consensus size: 25
51413881 GGGTATTCTA
**
51413891 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAA-TTTGTAAATCG-GGGTAAAATG
* * *
51413918 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATT-TGTAAATC-GGGGTAAAATG
* *
51413945 ATACTTCTGT-AA--GGGGTAAAATG
1 GTAATT-TGTAAATCGGGGTAAAATG
*
51413968 GTAATTTGTAAATCAAGGGTAAAATG
1 GTAATTTGTAAATC-GGGGTAAAATG
51413994 GTAATTATGTAAATCGGGGTAAAATG
1 GTAATT-TGTAAATCGGGGTAAAATG
51414020 GTAATTATGTAAATCGGGGTAAAATG
1 GTAATT-TGTAAATCGGGGTAAAATG
51414046 GTAATTTGTAAATCGGGGTA
1 GTAATTTGTAAATCGGGGTA
51414066 CTTTGGTAAT
Statistics
Matches: 129, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
22 3 0.02
23 15 0.12
25 14 0.11
26 62 0.48
27 35 0.27
ACGTcount: A:0.39, C:0.06, G:0.25, T:0.30
Consensus pattern (25 bp):
GTAATTTGTAAATCGGGGTAAAATG
Found at i:51414101 original size:27 final size:26
Alignment explanation
Indices: 51414071--51414160 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 26
51414061 GGGTACTTTG
51414071 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
* * *
51414098 GTAATTTCACAAATCGAGGGTATTTTA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
51414125 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAATCGAAG-GTATTTCA
51414152 GTAATTTTA
1 GTAATTTTA
51414161 GTAAACTAAA
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
26 5 0.10
27 43 0.86
28 2 0.04
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:51414134 original size:54 final size:53
Alignment explanation
Indices: 51414055--51414158 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 53
51414045 GGTAATTTGT
* *
51414055 AAATCGGGGTACTTTGGTAATTTTACAAGTCGAAG-GTATTTCAGTAATTTCAC
1 AAATCGGGGTACTTTAGTAATTTTACAA-ACGAAGCGTATTTCAGTAATTTCAC
* * * *
51414108 AAATCGAGGGTATTTTAGTATTTTTACAAACTAAGCGTATTTCGGTAATTT
1 AAATCG-GGGTACTTTAGTAATTTTACAAACGAAGCGTATTTCAGTAATTT
51414159 TAGTAAACTA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
53 10 0.23
54 33 0.77
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (53 bp):
AAATCGGGGTACTTTAGTAATTTTACAAACGAAGCGTATTTCAGTAATTTCAC
Found at i:51416906 original size:31 final size:31
Alignment explanation
Indices: 51416868--51416931 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
51416858 CCTTTTCATA
*
51416868 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
51416899 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
51416930 TT
1 TT
51416932 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:51417234 original size:22 final size:22
Alignment explanation
Indices: 51417124--51417332 Score: 246
Period size: 22 Copynumber: 9.0 Consensus size: 22
51417114 TGCTTTATCA
*
51417124 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-C-TT
*
51417148 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCC--TT
51417173 TATAACTGGGGCATAAGCCCTT
1 TATAACTGGGGCATAAGCCCTT
51417195 TATCGTAACTGGGGCATAAGCCCTT
1 TA---TAACTGGGGCATAAGCCCTT
51417220 TCATAACT-GGGCATAAGCCCTT
1 T-ATAACTGGGGCATAAGCCCTT
51417242 TATCTAACTGGGGCATAAGCCCTT
1 TA--TAACTGGGGCATAAGCCCTT
51417266 TATAACT-GGGCATAAGCCCTT
1 TATAACTGGGGCATAAGCCCTT
51417287 TAATAACTGGGGCATAAGCCCTT
1 T-ATAACTGGGGCATAAGCCCTT
51417310 TAATAACT-GGGCATAAGCCCTT
1 T-ATAACTGGGGCATAAGCCCTT
51417332 T
1 T
51417333 TGCACTTCCT
Statistics
Matches: 170, Mismatches: 3, Indels: 26
0.85 0.02 0.13
Matches are distributed among these distances:
21 16 0.09
22 45 0.26
23 32 0.19
24 39 0.23
25 37 0.22
26 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (22 bp):
TATAACTGGGGCATAAGCCCTT
Found at i:51417286 original size:45 final size:46
Alignment explanation
Indices: 51417151--51417332 Score: 287
Period size: 45 Copynumber: 3.9 Consensus size: 46
51417141 CCTCTTTTAG
* *
51417151 TAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTATC
1 TAACTGGGGCATAAGCCC-TTTAATAACT-GGGCATAAGCCCTTTATC
*
51417199 GTAACTGGGGCATAAGCCCTTTCATAACTGGGCATAAGCCCTTTATC
1 -TAACTGGGGCATAAGCCCTTTAATAACTGGGCATAAGCCCTTTATC
*
51417246 TAACTGGGGCATAAGCCCTTT-ATAACTGGGCATAAGCCCTTTA-A
1 TAACTGGGGCATAAGCCCTTTAATAACTGGGCATAAGCCCTTTATC
51417290 TAACTGGGGCATAAGCCCTTTAATAACTGGGCATAAGCCCTTT
1 TAACTGGGGCATAAGCCCTTTAATAACTGGGCATAAGCCCTTT
51417333 TGCACTTCCT
Statistics
Matches: 129, Mismatches: 3, Indels: 6
0.93 0.02 0.04
Matches are distributed among these distances:
44 21 0.16
45 43 0.33
46 21 0.16
47 18 0.14
48 9 0.07
49 17 0.13
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (46 bp):
TAACTGGGGCATAAGCCCTTTAATAACTGGGCATAAGCCCTTTATC
Found at i:51417405 original size:9 final size:9
Alignment explanation
Indices: 51417391--51417447 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
51417381 ATCTCATGTG
51417391 CATATCATA
1 CATATCATA
*
51417400 CATATCATGTG
1 CATATCA--TA
51417411 CATATCATA
1 CATATCATA
* *
51417420 CATGTCATGTG
1 CATATCA--TA
51417431 CATATCATA
1 CATATCATA
51417440 CATATCAT
1 CATATCAT
51417448 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:51417407 original size:20 final size:20
Alignment explanation
Indices: 51417379--51417449 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
51417369 GCATTTATGA
*
51417379 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
51417399 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
51417419 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
51417439 ACATATCATGT
1 ACATATCATGT
51417450 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:51417414 original size:11 final size:11
Alignment explanation
Indices: 51417384--51417438 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
51417374 TATGAACATC
51417384 TCATGTGCATA
1 TCATGTGCATA
*
51417395 TCA--TACATA
1 TCATGTGCATA
51417404 TCATGTGCATA
1 TCATGTGCATA
* *
51417415 TCA--TACATG
1 TCATGTGCATA
51417424 TCATGTGCATA
1 TCATGTGCATA
51417435 TCAT
1 TCAT
51417439 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:51417514 original size:25 final size:25
Alignment explanation
Indices: 51417486--51417533 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51417476 ATATATAAAC
* * *
51417486 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
51417511 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
51417534 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:51418706 original size:26 final size:27
Alignment explanation
Indices: 51418673--51418770 Score: 107
Period size: 27 Copynumber: 3.7 Consensus size: 27
51418663 TCATACGGAA
*
51418673 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGC-TATTACGGTCACTTTAC
*
51418698 CATACAGGGGTATTACGGTCACTTTAC
1 CATACAGGGCTATTACGGTCACTTTAC
*
51418725 CCTACAGGGCT-TTACGGTCACTTTAC
1 CATACAGGGCTATTACGGTCACTTTAC
*
51418751 CCTACAGGGGCT-TTACGGTC
1 CATACA-GGGCTATTACGGTC
51418771 TTTTTACCTA
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
25 8 0.12
26 26 0.40
27 31 0.48
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
CATACAGGGCTATTACGGTCACTTTAC
Found at i:51418787 original size:27 final size:27
Alignment explanation
Indices: 51418688--51418770 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
51418678 GGGCATATTC
* *
51418688 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
51418715 GTCACTTTACCCTACA-GGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
51418741 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
51418768 GTC
1 GTC
51418771 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.46
27 28 0.54
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:51418861 original size:26 final size:27
Alignment explanation
Indices: 51418832--51418882 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
51418822 GTAAATCTAC
51418832 AAACCAA-GGTATTTC-AGTAATTTTGT
1 AAACCAATGGTATTTCTA-TAATTTTGT
51418858 AAACCAATGGTATTTCTATAATTTT
1 AAACCAATGGTATTTCTATAATTTT
51418883 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 7 0.30
27 15 0.65
28 1 0.04
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (27 bp):
AAACCAATGGTATTTCTATAATTTTGT
Found at i:51418944 original size:27 final size:27
Alignment explanation
Indices: 51418914--51419075 Score: 161
Period size: 27 Copynumber: 6.0 Consensus size: 27
51418904 GTAACTTTGT
51418914 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * * *
51418941 AAAT-TGAGGATATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* *
51418968 AAACCAGTGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
51418995 AAA-CTA-GGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* *
51419021 AAAT-TGAGGGTATTTTTGTAATTTTAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* * * *
51419048 AAACCAAGGGTATTTTAGCAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
51419075 A
1 A
51419076 GACTAGGGTA
Statistics
Matches: 110, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
26 24 0.22
27 85 0.77
28 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:51419033 original size:53 final size:51
Alignment explanation
Indices: 51418921--51419098 Score: 185
Period size: 53 Copynumber: 3.4 Consensus size: 51
51418911 TGTAAATCAG
* * * * *
51418921 GGGTATTTTGGTAATTTTACAAATTGAGGATATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAACT-AGGGTATTTTGGTAATTTTACAAA-TA
51418974 GTGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAA-T-A
* * * * *
51419028 GGGTATTTTTGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACTA
1 GGGTATTTTGGTAATTTTACAAA-CTAGGGTATTTTGGTAATTTTACA-AATA
* *
51419081 GGGTATTCTAGTAATTTT
1 GGGTATTTTGGTAATTTT
51419099 GTAAATCGAG
Statistics
Matches: 108, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
53 60 0.56
54 47 0.44
55 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (51 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAATA
Found at i:51419110 original size:80 final size:80
Alignment explanation
Indices: 51418921--51419112 Score: 260
Period size: 80 Copynumber: 2.4 Consensus size: 80
51418911 TGTAAATCAG
* *
51418921 GGGTATTTTGGTAATTTTACAAATTGAGGATATTTCGGTAATTTCACAAACCAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTAG
*
51418986 TAATTTTACAAACTA
66 CAATTTTACAAACTA
** *
51419001 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTTGTAATTTTACAAACCAAG-GGTATTTTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATTTTA
*
51419065 GCAATTTTACAGACTA
65 GCAATTTTACAAACTA
* * ** *
51419081 GGGTATTCTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
51419113 AAACAGTAAT
Statistics
Matches: 99, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
80 97 0.98
81 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTAG
CAATTTTACAAACTA
Found at i:51419120 original size:27 final size:27
Alignment explanation
Indices: 51419091--51419269 Score: 215
Period size: 27 Copynumber: 6.8 Consensus size: 27
51419081 GGGTATTCTA
* **
51419091 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
51419118 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
51419145 ATACTTCTGTAAGTCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
51419172 GTAATTCTGTAAATCAAGGGTAAAAT-
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
51419198 GTAATTATGTAAATCG-GGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
51419224 GTAATTATGTAAATCG-GGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
51419250 GTAATT-TGTAAATCG-GGGTA
1 GTAATTCTGTAAATCGAGGGTA
51419270 CTTTGGTAAT
Statistics
Matches: 135, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
25 23 0.17
26 46 0.34
27 66 0.49
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:51419122 original size:80 final size:80
Alignment explanation
Indices: 51418921--51419139 Score: 197
Period size: 80 Copynumber: 2.7 Consensus size: 80
51418911 TGTAAATCAG
* * * * *** * * *
51418921 GGGTATTTTGGTAATTTTACAAATTGAGGATATTTCGGTAATTTCACAAACC-AGTGGTATTTTG
1 GGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTTACAAACCAAG-GGTATTTTA
*
51418985 GTAATTTTACAAACTA
65 GCAATTTTACAAACTA
* * * *****
51419001 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTTGTAATTTTACAAACCAAGGGTATTTTAG
1 GGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTTACAAACCAAGGGTATTTTAG
*
51419066 CAATTTTACAGACTA
66 CAATTTTACAAACTA
** * * *
51419081 GGGTATTCTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTA
1 GGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTTACAAACCAAGGGTA
51419140 AAACGATACT
Statistics
Matches: 118, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
80 116 0.98
81 2 0.02
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (80 bp):
GGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTTTACAAACCAAGGGTATTTTAG
CAATTTTACAAACTA
Found at i:51419361 original size:26 final size:26
Alignment explanation
Indices: 51419275--51419362 Score: 106
Period size: 26 Copynumber: 3.3 Consensus size: 26
51419265 GGGTACTTTG
*
51419275 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-ACGAAGGTATTTCA
*
51419302 GTAA-TTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAA-CGAAGGTATTTCA
* * *
51419328 GTATTTTTACAAACTAAGGTATTTCG
1 GTAATTTTACAAACGAAGGTATTTCA
51419354 GTAATTTTA
1 GTAATTTTA
51419363 GTAAACTAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
26 40 0.77
27 12 0.23
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAAACGAAGGTATTTCA
Found at i:51419368 original size:27 final size:26
Alignment explanation
Indices: 51419275--51419377 Score: 100
Period size: 26 Copynumber: 3.9 Consensus size: 26
51419265 GGGTACTTTG
* *
51419275 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-ACTAAGGTATTTCA
* *
51419302 GTAA-TTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAA-CTAAGGTATTTCA
* *
51419328 GTATTTTTACAAACTAAGGTATTTCG
1 GTAATTTTACAAACTAAGGTATTTCA
* *
51419354 GTAATTTTAGTAAACTAAAGTATT
1 GTAATTTTA-CAAACTAAGGTATT
51419378 CTAAACATGG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 40 0.62
27 24 0.38
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAAACTAAGGTATTTCA
Found at i:51422102 original size:31 final size:31
Alignment explanation
Indices: 51422064--51422127 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
51422054 CCTTTTCATA
*
51422064 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
51422095 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
51422126 TT
1 TT
51422128 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:51422424 original size:23 final size:23
Alignment explanation
Indices: 51422319--51422484 Score: 235
Period size: 23 Copynumber: 7.0 Consensus size: 23
51422309 TGCTTTATCA
*
51422319 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
51422343 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCC-TTT
51422368 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
51422391 ATCTAACTGGGGCATAAGCCCTTT
1 -TATAACTGGGGCATAAGCCCTTT
51422415 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
51422438 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
51422461 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
51422484 T
1 T
51422485 GCACTTCCTC
Statistics
Matches: 131, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
23 70 0.53
24 45 0.34
25 16 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:51422556 original size:9 final size:9
Alignment explanation
Indices: 51422542--51422598 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
51422532 ATCTCATGTG
51422542 CATATCATA
1 CATATCATA
*
51422551 CATATCATGTG
1 CATATCA--TA
51422562 CATATCATA
1 CATATCATA
* *
51422571 CATGTCATGTG
1 CATATCA--TA
51422582 CATATCATA
1 CATATCATA
51422591 CATATCAT
1 CATATCAT
51422599 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:51422558 original size:20 final size:20
Alignment explanation
Indices: 51422530--51422600 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
51422520 GCATTTATGA
*
51422530 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
51422550 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
51422570 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
51422590 ACATATCATGT
1 ACATATCATGT
51422601 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:51422565 original size:11 final size:11
Alignment explanation
Indices: 51422535--51422589 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
51422525 TATGAACATC
51422535 TCATGTGCATA
1 TCATGTGCATA
*
51422546 TCA--TACATA
1 TCATGTGCATA
51422555 TCATGTGCATA
1 TCATGTGCATA
* *
51422566 TCA--TACATG
1 TCATGTGCATA
51422575 TCATGTGCATA
1 TCATGTGCATA
51422586 TCAT
1 TCAT
51422590 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:51422665 original size:25 final size:25
Alignment explanation
Indices: 51422637--51422684 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51422627 ATATATAAAC
* * *
51422637 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
51422662 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
51422685 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:51423856 original size:26 final size:27
Alignment explanation
Indices: 51423823--51423920 Score: 107
Period size: 27 Copynumber: 3.7 Consensus size: 27
51423813 TCATACGGAA
*
51423823 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGC-TATTACGGTCACTTTAC
*
51423848 CATACAGGGGTATTACGGTCACTTTAC
1 CATACAGGGCTATTACGGTCACTTTAC
*
51423875 CCTACAGGGCT-TTACGGTCACTTTAC
1 CATACAGGGCTATTACGGTCACTTTAC
*
51423901 CCTACAGGGGCT-TTACGGTC
1 CATACA-GGGCTATTACGGTC
51423921 TTTTTACCTA
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
25 8 0.12
26 26 0.40
27 31 0.48
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
CATACAGGGCTATTACGGTCACTTTAC
Found at i:51423937 original size:27 final size:27
Alignment explanation
Indices: 51423838--51423920 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
51423828 GGGCATATTC
* *
51423838 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
51423865 GTCACTTTACCCTACA-GGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
51423891 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
51423918 GTC
1 GTC
51423921 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.46
27 28 0.54
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:51424012 original size:27 final size:27
Alignment explanation
Indices: 51423982--51424033 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
51423972 GTAAATCTAC
51423982 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
51424009 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
51424034 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:51424145 original size:25 final size:24
Alignment explanation
Indices: 51424111--51424157 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
51424101 GTATTTCGGT
51424111 AATTTTACAAACCAAGGGTATTTTA
1 AATTTTACAAA-CAAGGGTATTTTA
*
51424136 AATTTTACAAACTAGGGTATTT
1 AATTTTACAAACAAGGGTATTT
51424158 AGTAATTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (24 bp):
AATTTTACAAACAAGGGTATTTTA
Found at i:51424164 original size:25 final size:25
Alignment explanation
Indices: 51424072--51424166 Score: 104
Period size: 27 Copynumber: 3.7 Consensus size: 25
51424062 TGTAAATCAG
*
51424072 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTA-TTTGGTAATTTTACAAACT-A
*
51424099 GGGTATTTCGGTAATTTTACAAACCAA
1 GGGTATTT-GGTAATTTTACAAA-CTA
51424126 GGGTATTT--TAAATTTTACAAACTA
1 GGGTATTTGGT-AATTTTACAAACTA
*
51424150 GGGTATTTAGTAATTTT
1 GGGTATTTGGTAATTTT
51424167 GTAAATCGAG
Statistics
Matches: 60, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
24 11 0.18
25 17 0.28
26 4 0.07
27 28 0.47
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (25 bp):
GGGTATTTGGTAATTTTACAAACTA
Found at i:51424249 original size:25 final size:25
Alignment explanation
Indices: 51424158--51424333 Score: 191
Period size: 26 Copynumber: 6.9 Consensus size: 25
51424148 TAGGGTATTT
*
51424158 AGTAATTTTGTAAATCGAGGGTAAAA
1 AGTAATTCTGTAAATCGAGGGT-AAA
* *
51424184 TAGTAATTCTATAAATCAAGGGTAAA
1 -AGTAATTCTGTAAATCGAGGGTAAA
51424210 ACG-ATATTCTGTAAATCGAGGGTAAA
1 A-GTA-ATTCTGTAAATCGAGGGTAAA
*
51424236 AGTAATTCTGTAAATCAAGGGTAAA
1 AGTAATTCTGTAAATCGAGGGTAAA
*
51424261 AGTAATTATGTAAATC--GGGTAAA
1 AGTAATTCTGTAAATCGAGGGTAAA
*
51424284 ATGGTAATTATGTAAATCG-GGGTAAA
1 A--GTAATTCTGTAAATCGAGGGTAAA
51424310 ATGGTAATTCTGTAAATCG-GGGTA
1 A--GTAATTCTGTAAATCGAGGGTA
51424334 CTTTGGTAAT
Statistics
Matches: 135, Mismatches: 8, Indels: 13
0.87 0.05 0.08
Matches are distributed among these distances:
23 8 0.06
25 53 0.39
26 55 0.41
27 19 0.14
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (25 bp):
AGTAATTCTGTAAATCGAGGGTAAA
Found at i:51424260 original size:51 final size:49
Alignment explanation
Indices: 51424158--51424333 Score: 196
Period size: 51 Copynumber: 3.4 Consensus size: 49
51424148 TAGGGTATTT
* *
51424158 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAA
1 AGTAATTCTGTAAATCG-GGGT-AAA-AGTAATTCTGTAAATCAAGGGTAAA
51424210 ACG-ATATTCTGTAAATCGAGGGTAAAAGTAATTCTGTAAATCAAGGGTAAA
1 A-GTA-ATTCTGTAAATCG-GGGTAAAAGTAATTCTGTAAATCAAGGGTAAA
* * *
51424261 AGTAATTATGTAAATC-GGGTAAAATGGTAATTATGTAAATC-GGGGTAAA
1 AGTAATTCTGTAAATCGGGGTAAAA--GTAATTCTGTAAATCAAGGGTAAA
51424310 ATGGTAATTCTGTAAATCGGGGTA
1 A--GTAATTCTGTAAATCGGGGTA
51424334 CTTTGGTAAT
Statistics
Matches: 110, Mismatches: 6, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
48 8 0.07
49 8 0.07
50 26 0.24
51 40 0.36
52 10 0.09
53 18 0.16
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (49 bp):
AGTAATTCTGTAAATCGGGGTAAAAGTAATTCTGTAAATCAAGGGTAAA
Done.