Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 155 of 343
Found at i:51424344 original size:26 final size:26
Alignment explanation
Indices: 51424159--51424333 Score: 173
Period size: 25 Copynumber: 6.8 Consensus size: 26
51424149 AGGGTATTTA
* *
51424159 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTATGTAAATCG-GGGTAAAATG
* * * *
51424186 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTATGTAAATC-GGGGTAAAATG
* *
51424213 AT-ATTCTGTAAATCGAGGGTAAAA--
1 GTAATTATGTAAATCG-GGGTAAAATG
* *
51424237 GTAATTCTGTAAATCAAGGGTAAAA--
1 GTAATTATGTAAATC-GGGGTAAAATG
51424262 GTAATTATGTAAATC-GGGTAAAATG
1 GTAATTATGTAAATCGGGGTAAAATG
51424287 GTAATTATGTAAATCGGGGTAAAATG
1 GTAATTATGTAAATCGGGGTAAAATG
*
51424313 GTAATTCTGTAAATCGGGGTA
1 GTAATTATGTAAATCGGGGTA
51424334 CTTTGGTAAT
Statistics
Matches: 129, Mismatches: 12, Indels: 15
0.83 0.08 0.10
Matches are distributed among these distances:
23 8 0.06
24 1 0.01
25 49 0.38
26 49 0.38
27 22 0.17
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (26 bp):
GTAATTATGTAAATCGGGGTAAAATG
Found at i:51424369 original size:27 final size:26
Alignment explanation
Indices: 51424339--51424426 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 26
51424329 GGGTACTTTG
51424339 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
51424366 GTAATTTTACAAATCGAGGGTATTT-A
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * *
51424392 GT-ATTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAATCGAAG-GTATTTCA
51424418 GTAATTTTA
1 GTAATTTTA
51424427 GTAAACTAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
24 5 0.10
25 13 0.25
26 5 0.10
27 27 0.52
28 2 0.04
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:51424414 original size:52 final size:53
Alignment explanation
Indices: 51424323--51424426 Score: 133
Period size: 52 Copynumber: 2.0 Consensus size: 53
51424313 GTAATTCTGT
* *
51424323 AAATCGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTAC
1 AAATCGGGGTACTTTAGTAATTTTACAAGACGAAGGTATTTCAGTAATTTTAC
* *
51424376 AAATCGAGGGTA-TTTAGT-ATTTTACAA-ACTAAGCGTATTTCGGTAATTTTA
1 AAATCG-GGGTACTTTAGTAATTTTACAAGACGAAG-GTATTTCAGTAATTTTA
51424427 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
51 4 0.09
52 25 0.56
53 11 0.24
54 5 0.11
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (53 bp):
AAATCGGGGTACTTTAGTAATTTTACAAGACGAAGGTATTTCAGTAATTTTAC
Found at i:51435609 original size:25 final size:25
Alignment explanation
Indices: 51435581--51435630 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
51435571 TCTTCTCATA
* *
51435581 TCTTCACTTCTCTCTCATTTTTCTT
1 TCTTCACTTCCCTCTCATTATTCTT
* *
51435606 TCTTCATTTCCCTTTCATTATTCTT
1 TCTTCACTTCCCTCTCATTATTCTT
51435631 CATTCCCTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.10, C:0.30, G:0.00, T:0.60
Consensus pattern (25 bp):
TCTTCACTTCCCTCTCATTATTCTT
Found at i:51438070 original size:19 final size:19
Alignment explanation
Indices: 51438046--51438083 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
51438036 AGTATCGTCA
51438046 TTGGTATTCCAAGGAGAAT
1 TTGGTATTCCAAGGAGAAT
51438065 TTGGTATTCCAAGGAGAAT
1 TTGGTATTCCAAGGAGAAT
51438084 GGTAAAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32
Consensus pattern (19 bp):
TTGGTATTCCAAGGAGAAT
Found at i:51438137 original size:34 final size:34
Alignment explanation
Indices: 51438089--51438163 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
51438079 AGAATGGTAA
*
51438089 AAGAGTATGAACGAGGAAAGTCCCATTGAACCTT
1 AAGAATATGAACGAGGAAAGTCCCATTGAACCTT
*
51438123 AAGAATATGAACGAGGAAAGTCCCGTTGAACCTT
1 AAGAATATGAACGAGGAAAGTCCCATTGAACCTT
*
51438157 AGGAATA
1 AAGAATA
51438164 GATTCAGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (34 bp):
AAGAATATGAACGAGGAAAGTCCCATTGAACCTT
Found at i:51438251 original size:46 final size:46
Alignment explanation
Indices: 51438184--51438357 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
51438174 TTTGGGCATT
*
51438184 CGAACTCATTGAGTAGAGTCCGAGTTCACTTATGGATGCGAACATC
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
* * * * *
51438230 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-ACATC
* * * *
51438277 CGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGTGAACACC
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
* *
51438323 CGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
51438358 GCGGTTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 61 0.59
47 31 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
Found at i:51438296 original size:93 final size:93
Alignment explanation
Indices: 51438178--51438350 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
51438168 CAGATATTTG
* * *
51438178 GGCATTCGAACTCATTGAGTAGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTAGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
51438243 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
51438271 GGCATCCGAACTCGTTGAGCT-GAGTCCGAGTTCACTTATGGATGTGAACACCCGAGCTCATTGA
1 GGCATCCGAACTCATTGAG-TAGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGA
51438335 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
51438351 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
93 72 0.99
94 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTAGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:51444821 original size:46 final size:46
Alignment explanation
Indices: 51444678--51444821 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 46
51444668 CCCGCCCATA
* ** *
51444678 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATA-TTC-C
* * * * * ***
51444726 A-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATT--
1 AGTGAACTCGGACTCAACTCAACGAGCTCG--GATGCCCAAATATTCC
51444771 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATATTCC
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATATTCC
51444817 AGTGA
1 AGTGA
51444822 CATGTCACTT
Statistics
Matches: 73, Mismatches: 18, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
44 8 0.11
45 1 0.01
46 31 0.42
47 26 0.36
48 2 0.03
49 5 0.07
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATATTCC
Found at i:51449492 original size:46 final size:46
Alignment explanation
Indices: 51449336--51449496 Score: 166
Period size: 46 Copynumber: 3.5 Consensus size: 46
51449326 CCATAAGTGA
* * * *
51449336 ACTCGAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGG
1 ACTC-AACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGG
* * * * *
51449383 ACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--TTCA-CGAACTCGG
1 ACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAAGTGAACTCGG
*
51449430 ACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGATCTCGG
1 ACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGG
51449476 ACTCAACTCAACGAGTTCGGA
1 ACTCAACTCAACGAGTTCGGA
51449497 TGCTCAACCA
Statistics
Matches: 92, Mismatches: 15, Indels: 15
0.75 0.12 0.12
Matches are distributed among these distances:
43 6 0.07
44 1 0.01
45 2 0.02
46 43 0.47
47 33 0.36
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
ACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGG
Found at i:51449948 original size:30 final size:30
Alignment explanation
Indices: 51449914--51449973 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
51449904 ATTTAATATG
51449914 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
51449944 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
51449974 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:51456957 original size:93 final size:93
Alignment explanation
Indices: 51456850--51457020 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
51456840 GCCCCTAAGT
* *
51456850 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51456915 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
51456943 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51457008 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51457021 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:51457017 original size:46 final size:46
Alignment explanation
Indices: 51456845--51457017 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
51456835 AACCCGCCCC
* * *
51456845 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
51456891 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
51456939 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
51456984 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51457018 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:51457462 original size:30 final size:29
Alignment explanation
Indices: 51457428--51457486 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
51457418 ATTTAATACG
51457428 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTT-CCCCTA
* * *
51457458 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTCCCCTA
51457487 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTCCCCTA
Found at i:51464526 original size:92 final size:93
Alignment explanation
Indices: 51464368--51464537 Score: 256
Period size: 92 Copynumber: 1.8 Consensus size: 93
51464358 ACCATAAGTG
* * *
51464368 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCATAAGTGAACTCGGATCTCAAACTCAA
1 AACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCATAAGTGAACTCGGATCTCAAACTCAA
51464433 CGAGTTCGGATGCCTAGTACATTTCACC
66 CGAGTTCGGATGCCTAGTACATTTCACC
*
51464461 AACTC-GACTCAAATCAACGAG-TCTGGACATTTGCATCCATAAGTGAACTCGGA-CTCAAACTC
1 AACTCGGACTCAAATCAACGAGCTC-GGACATTCGCAT-CATAAGTGAACTCGGATCTCAAACTC
*
51464523 AACGTGTTCGGATGC
64 AACGAGTTCGGATGC
51464538 TCAACCATCC
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
91 2 0.03
92 47 0.67
93 21 0.30
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCATAAGTGAACTCGGATCTCAAACTCAA
CGAGTTCGGATGCCTAGTACATTTCACC
Found at i:51470642 original size:49 final size:48
Alignment explanation
Indices: 51470488--51470657 Score: 157
Period size: 49 Copynumber: 3.5 Consensus size: 48
51470478 AGATGCCGAC
* *
51470488 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATC-AGGTCGAT
* * * * * **
51470536 GACATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGACCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATC-AGGTCGAT
* * * *
51470585 G-CAGTGTCCTAGATAGGTCTTACACTGGCTCTCATCTATCAGTGTCGAA
1 GCCA-TGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAG-GTCGAT
51470634 GCCATGTCCCAGACAGGTCTTACA
1 GCCATGTCCCAGACAGGTCTTACA
51470658 ATGACACACA
Statistics
Matches: 98, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
47 16 0.16
48 17 0.17
49 63 0.64
50 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAGGTCGAT
Found at i:51470821 original size:46 final size:46
Alignment explanation
Indices: 51470720--51470828 Score: 125
Period size: 46 Copynumber: 2.4 Consensus size: 46
51470710 TATATCTCAA
*
51470720 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTTAAT
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTC-TCATAAT
* ** *
51470767 -GCCAATGCATGTCTGAGACATGTCTTACACTAGCTCT-T-ATAATGT
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCTCATAA--T
51470812 GGCCGATGCATGTCCCA
1 GGCCGATGCATGTCCCA
51470829 GATGTAACAA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
43 3 0.06
44 1 0.02
45 1 0.02
46 46 0.90
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCTCATAAT
Found at i:51474500 original size:20 final size:20
Alignment explanation
Indices: 51474475--51474513 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
51474465 ACAACTTCAA
51474475 TTATTTTAC-ACATTTACAAC
1 TTATTTTACAAC-TTTACAAC
51474495 TTATTTTACAACTTTACAA
1 TTATTTTACAACTTTACAA
51474514 AATAGCCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (20 bp):
TTATTTTACAACTTTACAAC
Found at i:51478396 original size:26 final size:26
Alignment explanation
Indices: 51478361--51478411 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
51478351 AATGTGAAAG
*
51478361 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
51478387 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
51478412 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:51478462 original size:103 final size:103
Alignment explanation
Indices: 51478283--51478547 Score: 433
Period size: 103 Copynumber: 2.6 Consensus size: 103
51478273 TTGTATATAA
** * * *
51478283 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
51478347 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
*
51478386 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
51478451 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* * *
51478489 AGGGGTTGCTAAGTGATGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
51478548 ATAACGGTTA
Statistics
Matches: 151, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
103 150 0.99
104 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:51478499 original size:26 final size:26
Alignment explanation
Indices: 51478464--51478515 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
51478454 AATGTGAAAG
* *
51478464 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
51478490 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
51478516 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:51485858 original size:26 final size:26
Alignment explanation
Indices: 51485823--51485874 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
51485813 AATGTGAAAG
* *
51485823 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
51485849 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
51485875 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:51485903 original size:103 final size:103
Alignment explanation
Indices: 51485641--51485906 Score: 426
Period size: 104 Copynumber: 2.6 Consensus size: 103
51485631 TGTATATAAA
** * * *
51485641 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAT-GGTGGTGCTAAGTGCGAGATCCACCATATCTT
51485706 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
51485745 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCGAGATCCACCATATCTT
51485810 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
51485848 AGGGGTTGCTAAGTGATGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCGAGATCCACCA
51485907 ATAACGGTTA
Statistics
Matches: 150, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
103 60 0.40
104 89 0.59
105 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGAGATCCACCATATCTTT
GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:51489224 original size:28 final size:29
Alignment explanation
Indices: 51489192--51489303 Score: 149
Period size: 29 Copynumber: 3.9 Consensus size: 29
51489182 TACCTGTATC
*
51489192 TGGCCCATTAAGCCC-AATCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
51489220 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
51489249 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
51489278 TGGCCCGTTAGGCCC-AGTCACATTCA
1 TGGCCCATTAGGCCCAAATCACATTCA
51489304 ATTCATGCTC
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
28 24 0.32
29 50 0.67
30 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:51489283 original size:58 final size:57
Alignment explanation
Indices: 51489183--51489293 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 57
51489173 AAATTCACAT
* *
51489183 ACCTGTATCTGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
51489240 ACCTATATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
51489294 GTCACATTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 21 0.44
58 27 0.56
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (57 bp):
ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:51490689 original size:16 final size:17
Alignment explanation
Indices: 51490657--51490692 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
51490647 ATAAAGAAAG
*
51490657 TTTAGGATTTTGGGATT
1 TTTAGGATTTCGGGATT
51490674 TTTAGG-TTTCGGGATT
1 TTTAGGATTTCGGGATT
51490690 TTT
1 TTT
51490693 GGGGCGTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.14, C:0.03, G:0.28, T:0.56
Consensus pattern (17 bp):
TTTAGGATTTCGGGATT
Found at i:51495004 original size:26 final size:26
Alignment explanation
Indices: 51494968--51495043 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 26
51494958 TAAAATTAAC
* *
51494968 CCTAAGGGTATATTGGTCATTTTGTA
1 CCTAGGGGTATATTGGTCATTTTCTA
* * *
51494994 CCTAGGGGTATAATGGTAATTTCCCTA
1 CCTAGGGGTATATTGGTCATTT-TCTA
* * *
51495021 CTTAGGGGTATTTTAGTCATTTT
1 CCTAGGGGTATATTGGTCATTTT
51495044 AACAATTTTC
Statistics
Matches: 38, Mismatches: 11, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
26 19 0.50
27 19 0.50
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.42
Consensus pattern (26 bp):
CCTAGGGGTATATTGGTCATTTTCTA
Found at i:51497201 original size:32 final size:32
Alignment explanation
Indices: 51497160--51497225 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
51497150 CATGATATGA
51497160 AGTACTATTTCTAGGAAGAACCATACTTGTTT
1 AGTACTATTTCTAGGAAGAACCATACTTGTTT
*
51497192 AGTACTATTTCTGGGAAGAACCATACTTGTTT
1 AGTACTATTTCTAGGAAGAACCATACTTGTTT
51497224 AG
1 AG
51497226 AAAGTGTGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.36
Consensus pattern (32 bp):
AGTACTATTTCTAGGAAGAACCATACTTGTTT
Found at i:51498826 original size:18 final size:18
Alignment explanation
Indices: 51498800--51498834 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51498790 TAAATAGTTT
* *
51498800 ATAATTATATTTATTATA
1 ATAAATATATTAATTATA
51498818 ATAAATATATTAATTAT
1 ATAAATATATTAATTAT
51498835 TATCAACTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATAAATATATTAATTATA
Found at i:51501676 original size:27 final size:27
Alignment explanation
Indices: 51501646--51501699 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
51501636 TCATACAACC
* *
51501646 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
51501673 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
51501700 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:51504195 original size:15 final size:16
Alignment explanation
Indices: 51504176--51504220 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
51504166 AGAAGCCCAG
51504176 GATAAAGAAATCCAAT
1 GATAAAGAAATCCAAT
*
51504192 -ATAAATAAATCC-AT
1 GATAAAGAAATCCAAT
*
51504206 GATAAGGAAATCCAA
1 GATAAAGAAATCCAA
51504221 ATTACAATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 2 0.08
15 21 0.88
16 1 0.04
ACGTcount: A:0.56, C:0.13, G:0.11, T:0.20
Consensus pattern (16 bp):
GATAAAGAAATCCAAT
Found at i:51508298 original size:27 final size:27
Alignment explanation
Indices: 51508235--51508298 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
51508225 ATGTAACAAT
* * * *
51508235 TCATACAATCCATGTAATAGTAATTTA
1 TCATTCAATTCATGTAACAATAATTTA
* *
51508262 ACATTCAATTCATGTAACAATAATTTG
1 TCATTCAATTCATGTAACAATAATTTA
51508289 TCATTCAATT
1 TCATTCAATT
51508299 TCACATGACA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (27 bp):
TCATTCAATTCATGTAACAATAATTTA
Found at i:51511774 original size:18 final size:19
Alignment explanation
Indices: 51511733--51511769 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
51511723 ATTCAAGCAA
51511733 ACCTTGATGAATTTTTATC
1 ACCTTGATGAATTTTTATC
51511752 ACCTTGATGAATTTTTAT
1 ACCTTGATGAATTTTTAT
51511770 TCCTTAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.14, G:0.11, T:0.49
Consensus pattern (19 bp):
ACCTTGATGAATTTTTATC
Found at i:51512692 original size:21 final size:23
Alignment explanation
Indices: 51512663--51512705 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
51512653 AATTGTACTT
*
51512663 AAATCATT-AACAAATTGAATTA
1 AAATCATTAAAAAAATTGAATTA
51512685 AAAT-ATTAAAAAAATTGAATT
1 AAATCATTAAAAAAATTGAATT
51512706 TTAATTAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (23 bp):
AAATCATTAAAAAAATTGAATTA
Found at i:51512740 original size:10 final size:10
Alignment explanation
Indices: 51512725--51512749 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
51512715 TTTATAATAA
51512725 ATTTTGATTT
1 ATTTTGATTT
51512735 ATTTTGATTT
1 ATTTTGATTT
51512745 ATTTT
1 ATTTT
51512750 CGACAAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (10 bp):
ATTTTGATTT
Found at i:51513616 original size:20 final size:18
Alignment explanation
Indices: 51513583--51513619 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
51513573 TGTGTTGTTG
51513583 ATATGCTTAATTTAATTA
1 ATATGCTTAATTTAATTA
51513601 ATATGGCTTAAATTTAATT
1 ATAT-GCTT-AATTTAATT
51513620 CGTATTAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 4 0.24
20 9 0.53
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (18 bp):
ATATGCTTAATTTAATTA
Found at i:51517228 original size:15 final size:15
Alignment explanation
Indices: 51517208--51517239 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
51517198 TAATTTCACT
51517208 AAAACCATGTCCATA
1 AAAACCATGTCCATA
51517223 AAAACCATGTCCATA
1 AAAACCATGTCCATA
51517238 AA
1 AA
51517240 CACCCACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (15 bp):
AAAACCATGTCCATA
Found at i:51518794 original size:25 final size:24
Alignment explanation
Indices: 51518766--51518817 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
51518756 ATAGGATACT
**
51518766 TCACAACTTGAAATCTGACCCGTCC
1 TCACAACCCGAAATCTGACCC-TCC
51518791 TCACAACCCGAAATCTGACCCTCC
1 TCACAACCCGAAATCTGACCCTCC
51518815 TCA
1 TCA
51518818 AGAGGTAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.29, C:0.40, G:0.10, T:0.21
Consensus pattern (24 bp):
TCACAACCCGAAATCTGACCCTCC
Found at i:51519966 original size:22 final size:23
Alignment explanation
Indices: 51519926--51519979 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 23
51519916 AAATTTAGTT
*
51519926 TTTAATATTTATATTTTTTTTTAG
1 TTTAAT-TTTATATCTTTTTTTAG
51519950 TTTAATTTT-TATCTTTTTTTAG
1 TTTAATTTTATATCTTTTTTTAG
*
51519972 TTAAATTT
1 TTTAATTT
51519980 AATTTTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 19 0.68
23 3 0.11
24 6 0.21
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.70
Consensus pattern (23 bp):
TTTAATTTTATATCTTTTTTTAG
Found at i:51520139 original size:17 final size:19
Alignment explanation
Indices: 51520117--51520169 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 19
51520107 TAAATTTAAA
51520117 AAATATATAAAAATT-AA-
1 AAATATATAAAAATTCAAC
* *
51520134 ATATAT-TTAAAATTCAAC
1 AAATATATAAAAATTCAAC
51520152 AAATATATAAAAAATTCA
1 AAATATAT-AAAAATTCA
51520170 TAAATTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
16 7 0.25
17 7 0.25
18 5 0.18
19 1 0.04
20 8 0.29
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (19 bp):
AAATATATAAAAATTCAAC
Found at i:51527605 original size:47 final size:47
Alignment explanation
Indices: 51527551--51528074 Score: 789
Period size: 47 Copynumber: 11.1 Consensus size: 47
51527541 TTAGGATTTT
** * *
51527551 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51527598 ATGTGATGAATGTGAACATGCATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATA--TGTGATAAGGCCGAATGGCCA
* * *
51527647 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51527694 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51527741 ATGTGATGAATGTGAACATGCATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATA--TGTGATAAGGCCGAATGGCCA
*
51527790 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* **
51527837 ATGTGATGAATGTGAACATGCGTACGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* ** *
51527884 ATGTGATGAATGTGAACATGCGTACGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51527931 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51527978 ATGTGATGAATGTGAACATGCATATATGTGACAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
51528025 ATGTGATGAACGTAGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
51528072 ATG
1 ATG
51528075 CGAAATGTGT
Statistics
Matches: 444, Mismatches: 28, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
47 351 0.79
48 3 0.01
49 90 0.20
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51527708 original size:143 final size:143
Alignment explanation
Indices: 51527551--51528074 Score: 815
Period size: 143 Copynumber: 3.7 Consensus size: 143
51527541 TTAGGATTTT
** *
51527551 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
* *
51527616 TGCATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGAGATAA
66 TGCATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAA
*
51527681 GGCCGAATGGCAA
131 GGCCGAATGGCCA
51527694 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
*
51527759 TGCATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAA
66 TGCATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAA
51527824 GGCCGAATGGCCA
131 GGCCGAATGGCCA
* ** *
51527837 ATGTGATGAATGTGAACATGCGTACGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
* * *
51527902 TGC--GTACGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATATGTGATAA
66 TGCATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAA
51527965 GGCCGAATGGCCA
131 GGCCGAATGGCCA
* * *
51527978 ATGTGATGAATGTGAACATGCATATATGTGACAAGGCCGAATGGCCAATGTGATGAACGTAGAA-
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGT-GAAC
* * * *
51528042 GTGTATATATGTG-G-TAAAGCCGAATGGCTAATG
65 ATGCATATATGTGTGATAAGGCCGAATGGCCAATG
51528075 CGAAATGTGT
Statistics
Matches: 351, Mismatches: 27, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
141 142 0.40
142 4 0.01
143 205 0.58
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.26
Consensus pattern (143 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAA
GGCCGAATGGCCA
Found at i:51527796 original size:22 final size:22
Alignment explanation
Indices: 51527769--51527843 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
51527759 TGCATATATG
51527769 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
51527791 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
51527814 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
51527838 TGTGAT
1 TGTGAT
51527844 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:51528104 original size:46 final size:46
Alignment explanation
Indices: 51528048--51528184 Score: 175
Period size: 46 Copynumber: 3.0 Consensus size: 46
51528038 AGAAGTGTAT
*
51528048 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
51528094 ATATGAGGTAAAGCTGAATGGCTAATGCGAAACGTGTATAAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * * * * *
51528140 ACATGCGGTAAAGTCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
51528185 TGTATATATA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:51531229 original size:36 final size:36
Alignment explanation
Indices: 51531160--51531229 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
51531150 GAGGTTCAAG
* * * *
51531160 GAAGCTATTTCGGGTCTTATTAATCAAGTTTGGGGA
1 GAAGCTATTGCAGGTCTCATTAATCAAGCTTGGGGA
* *
51531196 GAAGCTATTGCAGGTCTCATTGATCGAGCTTGGG
1 GAAGCTATTGCAGGTCTCATTAATCAAGCTTGGG
51531230 CTTGTACTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.23, C:0.14, G:0.30, T:0.33
Consensus pattern (36 bp):
GAAGCTATTGCAGGTCTCATTAATCAAGCTTGGGGA
Found at i:51536819 original size:26 final size:26
Alignment explanation
Indices: 51536787--51536842 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
51536777 CTTCCCGATA
51536787 GGCTCTTTGTGAGCTTCCTGATTA-AT
1 GGCTCTTTGTGAGCTTCCTG-TTATAT
51536813 GGCTCTTTGTGAGCTTCCTGTTATAT
1 GGCTCTTTGTGAGCTTCCTGTTATAT
51536839 GGCT
1 GGCT
51536843 TGAGAGAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 3 0.10
26 26 0.90
ACGTcount: A:0.12, C:0.20, G:0.25, T:0.43
Consensus pattern (26 bp):
GGCTCTTTGTGAGCTTCCTGTTATAT
Found at i:51538302 original size:15 final size:15
Alignment explanation
Indices: 51538282--51538317 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
51538272 GACATGGGCA
51538282 TGTGTCTCAACCGTG
1 TGTGTCTCAACCGTG
* *
51538297 TGTGTCTCAGCTGTG
1 TGTGTCTCAACCGTG
51538312 TGTGTC
1 TGTGTC
51538318 ACACGGCCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.08, C:0.22, G:0.31, T:0.39
Consensus pattern (15 bp):
TGTGTCTCAACCGTG
Found at i:51543314 original size:39 final size:39
Alignment explanation
Indices: 51543269--51543386 Score: 209
Period size: 39 Copynumber: 3.0 Consensus size: 39
51543259 AAGCAAGACA
*
51543269 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
51543308 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
51543347 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
51543386 C
1 C
51543387 CGGTAACATA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:51545899 original size:46 final size:47
Alignment explanation
Indices: 51545846--51546115 Score: 225
Period size: 46 Copynumber: 5.7 Consensus size: 47
51545836 TATTTGTGTT
51545846 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGTAA
* * * **
51545892 GCCAGTGTAAGA-CATGTCTAGAACAT-GCATCGGCTATAAGATGT--
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCT-CGAGATGTAA
* * * * *
51545936 GTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATGGATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGT-A-A
* * * *
51545986 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGA-TTTTGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGT-A-A
* * * *
51546035 GTCAGTGTAAGACCATGTCTGGTACATGGCATCGACTTGATGGATG--A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGA--GATGTAA
51546082 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
51546116 GCATTATACC
Statistics
Matches: 181, Mismatches: 32, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 45 0.25
47 35 0.19
48 5 0.03
49 34 0.19
50 34 0.19
51 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGAGATGTAA
Found at i:51546046 original size:99 final size:96
Alignment explanation
Indices: 51545936--51546111 Score: 266
Period size: 96 Copynumber: 1.8 Consensus size: 96
51545926 TATAAGATGT
* *
51545936 GTCAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCATGGATATGTGA-GAGCTAGTGTAAGAC
1 GTCAGTGTAAGACCATGTCT-GGTACATGGCATCGAC-TGG--ATG-GATGAGCCAGTGTAAGAC
51545999 CATGTCTGGGACATGGCGTCAGCCTCGATTTTGATA
61 CATGTCTGGGACATGGCGTCAGCCTCGATTTTGATA
*
51546035 GTCAGTGTAAGACCATGTCTGGTACATGGCATCGACTTGATGGATGAGCCAGTGTAAGACCATGT
1 GTCAGTGTAAGACCATGTCTGGTACATGGCATCGACTGGATGGATGAGCCAGTGTAAGACCATGT
51546100 CTGGGACATGGC
66 CTGGGACATGGC
51546112 ATCGGCATTA
Statistics
Matches: 72, Mismatches: 3, Indels: 7
0.88 0.04 0.09
Matches are distributed among these distances:
95 2 0.03
96 34 0.47
98 4 0.06
99 32 0.44
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (96 bp):
GTCAGTGTAAGACCATGTCTGGTACATGGCATCGACTGGATGGATGAGCCAGTGTAAGACCATGT
CTGGGACATGGCGTCAGCCTCGATTTTGATA
Found at i:51546107 original size:146 final size:140
Alignment explanation
Indices: 51545849--51546119 Score: 357
Period size: 146 Copynumber: 1.9 Consensus size: 140
51545839 TTGTGTTGCC
51545849 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCCAGTGTAAGACATGTCTAGA
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCCAGTGTAAGACATGTCTAGA
* * *
51545914 ACATGCATCGGCTATAAGATGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATGGATA
66 ACATGCATCGACTATAAGATGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATGGATA
51545979 TGTGAGAGCT
131 TGTGAGAGCT
* * * *
51545989 AGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGA-TTTTGATAGTCAGTGTAAGACCATGT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGT-A-AGCCAGTGTAAGA-CATGT
* * * *
51546053 CTGGTACATGGCATCGACT-TGATGGATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
61 CTAGAACAT-GCATCGACTAT-A-AGATGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGG
51546117 CAT
123 CAT
51546120 TATACCCTAT
Statistics
Matches: 112, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
140 9 0.08
141 16 0.14
142 13 0.12
143 12 0.11
144 13 0.12
145 9 0.08
146 40 0.36
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCCAGTGTAAGACATGTCTAGA
ACATGCATCGACTATAAGATGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATGGATA
TGTGAGAGCT
Found at i:51559290 original size:25 final size:25
Alignment explanation
Indices: 51559262--51559339 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
51559252 CTCGGCCCTG
51559262 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
** * *** *
51559287 TCACATCGA-CCA-TTAGGC-CTCA
1 TCACATATATACACTTTCACATTCA
51559309 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
51559334 TCACAT
1 TCACAT
51559340 CGGCTATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 10 0.28
23 5 0.14
24 5 0.14
25 16 0.44
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.32
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:51559432 original size:49 final size:47
Alignment explanation
Indices: 51559211--51560046 Score: 1291
Period size: 47 Copynumber: 17.6 Consensus size: 47
51559201 CCCTTCGGGA
* * * * * *
51559211 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51559258 CCTGTCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51559305 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51559352 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51559399 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51559448 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51559495 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51559544 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51559593 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51559640 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51559687 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51559736 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51559785 CTTATCACATATATACACTTCCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51559832 CTTATCACATATATATACACTTTCACA---ATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51559878 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51559927 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51559974 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51560021 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
51560047 CACAATTATC
Statistics
Matches: 740, Mismatches: 38, Indels: 22
0.93 0.05 0.03
Matches are distributed among these distances:
46 44 0.06
47 420 0.57
49 276 0.37
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51559445 original size:96 final size:96
Alignment explanation
Indices: 51559211--51560046 Score: 1302
Period size: 96 Copynumber: 8.8 Consensus size: 96
51559201 CCCTTCGGGA
* * * * * * *
51559211 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
51559274 ACTTTCACATTCATCACATCGACCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
51559305 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
51559368 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
51559399 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
51559464 ATTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
51559495 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
51559560 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
51559593 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
51559656 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
51559687 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
51559752 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51559785 CTTATCAC--ATATATACACTTCCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
51559848 ACACTTTCACA---ATCACATTGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51559878 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
51559943 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
51559974 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
51560037 ACATTCACAT
66 ACTTTCACAT
51560047 CACAATTATC
Statistics
Matches: 693, Mismatches: 34, Indels: 30
0.92 0.04 0.04
Matches are distributed among these distances:
93 44 0.06
94 194 0.28
95 43 0.06
96 323 0.47
98 89 0.13
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51559936 original size:22 final size:22
Alignment explanation
Indices: 51559908--51559983 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
51559898 TTTCACATTC
51559908 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
51559930 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
51559954 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
51559977 ATCACAT
1 ATCACAT
51559984 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:51562605 original size:40 final size:40
Alignment explanation
Indices: 51562548--51562646 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
51562538 GGGGTGTCAC
* *
51562548 ATATATGGCACTCAGTGTGCGATTCAAG-AAAACTTCGACT
1 ATATTTGGCACTTAGTGTGCGATTC-AGCAAAACTTCGACT
* * * *
51562588 ATATTTGGCACTTAGTGTGCGATTCGGCATAGCTTCGGCT
1 ATATTTGGCACTTAGTGTGCGATTCAGCAAAACTTCGACT
51562628 ATATTTGGCACTTAGTGTG
1 ATATTTGGCACTTAGTGTG
51562647 TGAGACTGAG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.02
40 51 0.98
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (40 bp):
ATATTTGGCACTTAGTGTGCGATTCAGCAAAACTTCGACT
Found at i:51562682 original size:41 final size:42
Alignment explanation
Indices: 51562616--51562734 Score: 125
Period size: 41 Copynumber: 2.9 Consensus size: 42
51562606 GCGATTCGGC
* ** * * *
51562616 ATAGCTTCGGCTATATTTGGCACTTAGTGTGTGAGACTGA-G
1 ATAGCTTCGGCTATGTAAGGCACTTAGTGTGAGAGAATGATA
* *
51562657 ATAGCTTCGGCTATGTAAGGAACTTAGTGTGAGA-AATTATA
1 ATAGCTTCGGCTATGTAAGGCACTTAGTGTGAGAGAATGATA
* *
51562698 ATAGCTTCGGCTATGTATCGGCACTTAGTGTGCGAGA
1 ATAGCTTCGGCTATGTA-AGGCACTTAGTGTGAGAGA
51562735 TATCAAATAT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
40 3 0.05
41 46 0.72
42 14 0.22
43 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (42 bp):
ATAGCTTCGGCTATGTAAGGCACTTAGTGTGAGAGAATGATA
Found at i:51564114 original size:17 final size:17
Alignment explanation
Indices: 51564092--51564125 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51564082 CCCAAAGGAA
*
51564092 CTAAAAGTACTTGTATT
1 CTAAAAGTACTAGTATT
51564109 CTAAAAGTACTAGTATT
1 CTAAAAGTACTAGTATT
51564126 AACTTTCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (17 bp):
CTAAAAGTACTAGTATT
Found at i:51569054 original size:12 final size:12
Alignment explanation
Indices: 51569037--51569063 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
51569027 GGGTACGAGT
51569037 AAGGGGTGTTAC
1 AAGGGGTGTTAC
51569049 AAGGGGTGTTAC
1 AAGGGGTGTTAC
51569061 AAG
1 AAG
51569064 CATTAACGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.41, T:0.22
Consensus pattern (12 bp):
AAGGGGTGTTAC
Found at i:51573184 original size:2 final size:2
Alignment explanation
Indices: 51573177--51573201 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
51573167 GTGATGATGT
51573177 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
51573202 TCTGCTGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:51575740 original size:27 final size:28
Alignment explanation
Indices: 51575710--51575809 Score: 100
Period size: 27 Copynumber: 3.7 Consensus size: 28
51575700 TTTAGTTTAC
51575710 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* ** *
51575737 TAAAAATACTAAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
51575764 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
51575791 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
51575810 CCGATTTACA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.11
27 52 0.85
28 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:51575778 original size:54 final size:54
Alignment explanation
Indices: 51575710--51575816 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
51575700 TTTAGTTTAC
* * *
51575710 TAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTAAAATACCCTCGATTTG
1 TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATACCAAAATACCCCCGATTTG
* * * *
51575764 TAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAATACCCCCGATTT
51575817 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 5 0.11
54 40 0.89
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAATACCCCCGATTTG
Found at i:51575852 original size:54 final size:54
Alignment explanation
Indices: 51575805--51576017 Score: 300
Period size: 54 Copynumber: 3.9 Consensus size: 54
51575795 ATTACCAAAG
* * *
51575805 TACCCCCGATTTACAGAATTACCGTTTTACCCCCGATTTACATAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTT
* * * *
51575859 TACCCTCGATTTACATAATTATCGTTTTACCCTCGACTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTT
* * *
51575913 TACCCTCGATTTACTGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTT
* * **
51575967 TACCCTTGATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTA
51576018 AAATACCCTT
Statistics
Matches: 138, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 138 1.00
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTT
Found at i:51575859 original size:27 final size:27
Alignment explanation
Indices: 51575805--51576017 Score: 257
Period size: 27 Copynumber: 7.9 Consensus size: 27
51575795 ATTACCAAAG
* * **
51575805 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
51575832 TACCCCCGATTTACATAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
51575859 TACCCTCGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTT
* *
51575886 TACCCTCGACTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
** **
51575913 TACCCTCGATTTACTGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
51575940 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
51575967 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
51575994 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTACAAAATTACTA
51576018 AAATACCCTT
Statistics
Matches: 165, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 163 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:51576024 original size:27 final size:27
Alignment explanation
Indices: 51575738--51576215 Score: 176
Period size: 27 Copynumber: 17.6 Consensus size: 27
51575728 CTTAGTTTGT
* **
51575738 AAAAATACTAAAATACCCTCGATTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* * * **
51575765 AAAATTACTGAAATACCTTCGACTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* * *
51575792 AAAATTACCAAAGTACCCCCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* ***** *
51575819 AGAATTACCGTTTTACCCCCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* ***
51575846 ATAATTACTATTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* ** *
51575873 ATAATTATCGT--TTTACCCTCGACTTAC
1 AAAATTA-C-TAAAATACCCTCGATTTAC
****
51575900 AAAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
** ***** *
51575927 TGAATTACCGTTTTACCCTCGATTTAT
1 AAAATTACTAAAATACCCTCGATTTAC
* *** *
51575954 AGAATTACTATTTTACCCTTGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
***
51575981 AAAATTACTATTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* * **
51576008 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* * **
51576035 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACTAAAATACCCTCGA-TTTAC
* * * **
51576062 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* ** * * **
51576089 GAAATTACCGAAATACACTCAATTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
*
51576116 AAAATTACCAAAATACCC-CTGATTTAC
1 AAAATTACTAAAATACCCTC-GATTTAC
* * *
51576143 AAAGTTAC-AGAAATACCCTTGACTTTATA
1 AAAATTACTA-AAATACCCTCGA-TTTA-C
* * *
51576172 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACTA-AAATACCCTCGATTTAC
*
51576199 AAAATTACTGAAATACC
1 AAAATTACTAAAATACC
51576216 TTTGGTTTGT
Statistics
Matches: 369, Mismatches: 69, Indels: 26
0.80 0.15 0.06
Matches are distributed among these distances:
25 1 0.00
26 3 0.01
27 336 0.91
28 10 0.03
29 19 0.05
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCGATTTAC
Found at i:51576028 original size:54 final size:54
Alignment explanation
Indices: 51575738--51576026 Score: 247
Period size: 54 Copynumber: 5.4 Consensus size: 54
51575728 CTTAGTTTGT
* * ** *** * * **
51575738 AAAAATACTAAAATACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGT
1 AAAATTACTAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAC
* * * * * *
51575792 AAAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTTTACCCCCGATTTAC
1 AAAATTACTAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAC
* ** * *
51575846 ATAATTACTATTTTACCCTCGATTTACATAATTA-TCGTTTTACCCTCGACTTAC
1 AAAATTACTAAATTACCCTCGATTTACAAAATTACT-GTTTTACCCTCGATTTAC
*** ** * *
51575900 AAAATTACTGTTTTACCCTCGATTTACTGAATTACCGTTTTACCCTCGATTTAT
1 AAAATTACTAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAC
* ** * *
51575954 AGAATTACTATTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGATTTAC
1 AAAATTACTAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAC
*
51576008 AAAATTACTAAAATACCCT
1 AAAATTACTAAATTACCCT
51576027 TGGTTTGTAA
Statistics
Matches: 188, Mismatches: 45, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
54 188 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (54 bp):
AAAATTACTAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAC
Found at i:51576052 original size:81 final size:81
Alignment explanation
Indices: 51575751--51576150 Score: 266
Period size: 81 Copynumber: 4.9 Consensus size: 81
51575741 AATACTAAAA
** * * * *
51575751 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATT
* **
51575816 TACAGAATTACCGTTT
66 TACAAAATTACTATTT
* * ** ** * * ****
51575832 TACCCCCGATTTACATAATTACT-ATTTTACCCTCGATTTACATAATTATCGTTTTA-CCCTCGA
1 TACCCTCGATTTACAAAATTACTGA-AATACCCTCGATTTGTAAAATTACCAAAATACCCCT-GA
* *
51575895 CTTACAAAATTACTGTTT
64 TTTACAAAATTACTATTT
** * *** * * * *** *
51575913 TACCCTCGATTTACTGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATT
51575978 TACAAAATTACTATTT
66 TACAAAATTACTATTT
* * *
51575994 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-AGT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGA-T
** * ***
51576058 TTGTAAAATTACCAAAA
65 TTACAAAATTACTATTT
* * *** * * *
51576075 TACCCTTGGTTTGTGAAATTACCGAAATACACTCAATTTGTAAAATTACCAAAATACCCCTGATT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATT
*
51576140 TACAAAGTTAC
66 TACAAAATTAC
51576151 AGAAATACCC
Statistics
Matches: 244, Mismatches: 69, Indels: 12
0.75 0.21 0.04
Matches are distributed among these distances:
80 5 0.02
81 235 0.96
82 4 0.02
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.36
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATT
TACAAAATTACTATTT
Found at i:51576220 original size:27 final size:27
Alignment explanation
Indices: 51575967--51576246 Score: 177
Period size: 27 Copynumber: 10.3 Consensus size: 27
51575957 ATTACTATTT
* * * ***
51575967 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
51575994 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
51576021 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
51576048 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
51576075 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *** *
51576102 TACACTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
51576129 TACCCCTGATTTACAAAGTTA-CAGAAA
1 TACCCTTGGTTTATAAAATTACCA-AAA
* *
51576156 TACCCTTGACTTTATAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAT-AAAATTACCA-AAA
* * **
51576185 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
51576212 TACCTTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
51576239 CACCCTTG
1 TACCCTTG
51576247 TAGGATGAAA
Statistics
Matches: 203, Mismatches: 46, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
26 2 0.01
27 174 0.86
28 9 0.04
29 18 0.09
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACCAAAA
Found at i:51576341 original size:27 final size:26
Alignment explanation
Indices: 51576240--51576341 Score: 80
Period size: 27 Copynumber: 3.8 Consensus size: 26
51576230 TTACCAAAAC
* * * *
51576240 ACCCTTGTAGGATGAAATGACTAAAAT
1 ACCCCTGTAGG-TAAAATGACCATAAT
* * *
51576267 ACCCCTATGAGGTAAAAAGACCGTAA-
1 ACCCCTGT-AGGTAAAATGACCATAAT
*
51576293 AGCCCCTGTAGGGTAAAGTGACCATAAT
1 A-CCCCTGTA-GGTAAAATGACCATAAT
51576321 ACCCCTGTATGGTAAAATGAC
1 ACCCCTGTA-GGTAAAATGAC
51576342 GAATATGCCC
Statistics
Matches: 58, Mismatches: 13, Indels: 8
0.73 0.16 0.10
Matches are distributed among these distances:
26 2 0.03
27 52 0.90
28 4 0.07
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (26 bp):
ACCCCTGTAGGTAAAATGACCATAAT
Found at i:51577150 original size:26 final size:26
Alignment explanation
Indices: 51577121--51577270 Score: 239
Period size: 26 Copynumber: 5.8 Consensus size: 26
51577111 GAGGAAGTGC
*
51577121 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
* *
51577147 AAAAGGGCTTATGCCGCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
51577173 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
51577199 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
51577225 AAAAGGGTTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
51577251 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
51577271 ACTAAAGAGG
Statistics
Matches: 113, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 10 0.09
26 103 0.91
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:51577199 original size:52 final size:52
Alignment explanation
Indices: 51577121--51577270 Score: 266
Period size: 52 Copynumber: 2.9 Consensus size: 52
51577111 GAGGAAGTGC
*
51577121 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCGCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
51577173 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
* *
51577225 AAAAGGGTTTATGCCCCAGTTTACTGAAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
51577271 ACTAAAGAGG
Statistics
Matches: 95, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
51 10 0.11
52 85 0.89
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:51577472 original size:42 final size:42
Alignment explanation
Indices: 51577413--51577504 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
51577403 TAGTCTCCCC
* * *
51577413 AAATGGGCTTGCATACATTCATT-AGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGA-CATTACATGTGATATTG
*
51577455 AAATGGGTTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
51577497 AAATGGGC
1 AAATGGGC
51577505 CTATAGGCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:51577566 original size:31 final size:31
Alignment explanation
Indices: 51577528--51577606 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
51577518 CGTTTACAGT
*
51577528 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
51577559 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
51577590 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
51577607 AATCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:51580017 original size:46 final size:46
Alignment explanation
Indices: 51579694--51580016 Score: 423
Period size: 46 Copynumber: 6.9 Consensus size: 46
51579684 TTTGACATGA
* * * *
51579694 TGCCATAGTATCTTTCAACTATGGTCTTACCCATTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTA--CA--CA-TTTCATATCACGT
** * *
51579744 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
** * *
51579790 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
* **
51579836 TGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
* *
51579882 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
* *
51579928 TGCCATGGTATATTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
51579974 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
51580017 GAGAGCACAC
Statistics
Matches: 255, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
45 4 0.02
46 224 0.88
50 27 0.11
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
Found at i:51582127 original size:19 final size:18
Alignment explanation
Indices: 51582099--51582134 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
51582089 AATTTTTCCC
*
51582099 TTTTTTCTTCTTTCTTTT
1 TTTTTTCTTCCTTCTTTT
51582117 TTTTTTCCTTCCTTCTTT
1 TTTTTT-CTTCCTTCTTT
51582135 CTTTCCCTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTTCTTCCTTCTTTT
Found at i:51583724 original size:294 final size:291
Alignment explanation
Indices: 51583198--51583781 Score: 1141
Period size: 294 Copynumber: 2.0 Consensus size: 291
51583188 TCTTGTTCCA
51583198 TATGTCGATGACATTCTACTCATTGGAAATGATGTAAGGACATCTATAACACCCCTTACCCGTAC
1 TATGTCGATGACATTCTACTCATTGGAAATGATGTAAGGACATCTATAACACCCCTTACCCGTAC
51583263 CCGAGACCGGGACTAGGTACGAGGCATTACCGGAAAACCCAGGTTATTAAATTTCATTCCAATTT
66 CCGAGACCGGGACTAGGTACGAGGCATTACCGGAAAACCCAGGTTATTAAATTTCATTCCAATTT
51583328 AAAACCAATCAAACAAAATCATTTTATCTCTATTATGGACCTACGAAGTCCAAAACATACTTTAA
131 AAAACCAATCAAACAAAATCATTTTATCTCTATTATGGACCTACGAAGTCCAAAACATACTTTAA
51583393 AAGCGAACTGGAACTAAGTCGAGAACTATAGAGAGTTTTAGTAAAATTTCCCAGGGTTATGCCTC
196 AAGCGAACTGGAACTAAGTCGAGAACTATAGAGAGTTTTAGTAAAATTTCCCAGGGTTATGCCTC
51583458 ACATGCCCGTGTGGAGGCAAAGCACACACCT
261 ACATGCCCGTGTGGAGGCAAAGCACACACCT
51583489 TATGTCGATGACATTCTACTCATTGGAAATGATGTAAGGACATTATCTATAACACCCCTTACCCG
1 TATGTCGATGACATTCTACTCATTGGAAATGATGTAAGGAC---ATCTATAACACCCCTTACCCG
51583554 TACCCGAGACCGGGACTAGGTACGAGGCATTACCGGAAAACCCAGGTTATTAAATTTCATTCCAA
63 TACCCGAGACCGGGACTAGGTACGAGGCATTACCGGAAAACCCAGGTTATTAAATTTCATTCCAA
51583619 TTTAAAACCAATCAAACAAAATCATTTTATCTCTATTATGGACCTACGAAGTCCAAAACATACTT
128 TTTAAAACCAATCAAACAAAATCATTTTATCTCTATTATGGACCTACGAAGTCCAAAACATACTT
51583684 TAAAAGCGAACTGGAACTAAGTCGAGAACTATAGAGAGTTTTAGTAAAATTTCCCAGGGTTATGC
193 TAAAAGCGAACTGGAACTAAGTCGAGAACTATAGAGAGTTTTAGTAAAATTTCCCAGGGTTATGC
51583749 CTCACATGCCCGTGTGGAGGCAAAGCACACACC
258 CTCACATGCCCGTGTGGAGGCAAAGCACACACC
51583782 CGTGTGCTTG
Statistics
Matches: 290, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
291 41 0.14
294 249 0.86
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (291 bp):
TATGTCGATGACATTCTACTCATTGGAAATGATGTAAGGACATCTATAACACCCCTTACCCGTAC
CCGAGACCGGGACTAGGTACGAGGCATTACCGGAAAACCCAGGTTATTAAATTTCATTCCAATTT
AAAACCAATCAAACAAAATCATTTTATCTCTATTATGGACCTACGAAGTCCAAAACATACTTTAA
AAGCGAACTGGAACTAAGTCGAGAACTATAGAGAGTTTTAGTAAAATTTCCCAGGGTTATGCCTC
ACATGCCCGTGTGGAGGCAAAGCACACACCT
Found at i:51587618 original size:101 final size:101
Alignment explanation
Indices: 51587493--51587723 Score: 288
Period size: 101 Copynumber: 2.3 Consensus size: 101
51587483 AACGGGGTTT
* * *
51587493 TACTTGCACA-CATATATCGGAATCACAT-TTCGATGCCAACGTATAAAATGTGGACTTATTCAC
1 TACTCGCACATCATATATCGGAATCACATATT-GATGCCAACGTATAAAACGTGGACTTACTCAC
* *
51587556 ACACATATATCA-TAATCACATATCGATTCCATGGTCA
65 ACACATATAT-AGGAATCACACATCGATTCCATGGTCA
* * * * *
51587593 TACTCGCACATCACATATCGGAATCACATATTGATGCCAACGTATTAAACGTGGTCTTACTCGCG
1 TACTCGCACATCATATATCGGAATCACATATTGATGCCAACGTATAAAACGTGGACTTACTCACA
* *
51587658 CACATGTATAGGAATCACACATCGATTCCATGGTCT
66 CACATATATAGGAATCACACATCGATTCCATGGTCA
* *
51587694 TACTCGTACATCATATATCGAAATTCACAT
1 TACTCGCACATCATATATCGGAA-TCACAT
51587724 GTAAGTGTCT
Statistics
Matches: 112, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
100 10 0.09
101 94 0.84
102 8 0.07
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.29
Consensus pattern (101 bp):
TACTCGCACATCATATATCGGAATCACATATTGATGCCAACGTATAAAACGTGGACTTACTCACA
CACATATATAGGAATCACACATCGATTCCATGGTCA
Found at i:51588274 original size:20 final size:20
Alignment explanation
Indices: 51588249--51588290 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
51588239 ATTTTCATTC
51588249 AACTTAGTCCAAAAACACAT
1 AACTTAGTCCAAAAACACAT
51588269 AACTTAGTCCAAAAACACAT
1 AACTTAGTCCAAAAACACAT
51588289 AA
1 AA
51588291 ATGGGCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.52, C:0.24, G:0.05, T:0.19
Consensus pattern (20 bp):
AACTTAGTCCAAAAACACAT
Found at i:51597332 original size:94 final size:94
Alignment explanation
Indices: 51597171--51597358 Score: 358
Period size: 94 Copynumber: 2.0 Consensus size: 94
51597161 CATACATATT
*
51597171 TAAGTATATTAAGAGTTTACTTCGGGTTATACGAACTTACCTGGTAATTGCTTCAATTATGTATT
1 TAAGTATATTAAGAGTTTACTTCGAGTTATACGAACTTACCTGGTAATTGCTTCAATTATGTATT
51597236 TCGGTTATTTCGAAACCTTTTGTTTTCCA
66 TCGGTTATTTCGAAACCTTTTGTTTTCCA
*
51597265 TAAGTATATTAAGAGTTTACTTCGAGTTATACGAACTTACCTGGTAATTGCTTCAATTTTGTATT
1 TAAGTATATTAAGAGTTTACTTCGAGTTATACGAACTTACCTGGTAATTGCTTCAATTATGTATT
51597330 TCGGTTATTTCGAAACCTTTTGTTTTCCA
66 TCGGTTATTTCGAAACCTTTTGTTTTCCA
51597359 CGATCGACCT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (94 bp):
TAAGTATATTAAGAGTTTACTTCGAGTTATACGAACTTACCTGGTAATTGCTTCAATTATGTATT
TCGGTTATTTCGAAACCTTTTGTTTTCCA
Found at i:51602677 original size:23 final size:22
Alignment explanation
Indices: 51602645--51602689 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
51602635 GGAATGGTGA
*
51602645 TTTATTGCATTTTTACTGGCAG
1 TTTATTGCATTGTTACTGGCAG
*
51602667 TTTATCTGCATTGTTATTGGCAG
1 TTTAT-TGCATTGTTACTGGCAG
51602690 AATTTTCTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.18, C:0.13, G:0.20, T:0.49
Consensus pattern (22 bp):
TTTATTGCATTGTTACTGGCAG
Found at i:51605741 original size:13 final size:13
Alignment explanation
Indices: 51605723--51605747 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51605713 GGCGCATTCG
51605723 TAGTTAATTTAGC
1 TAGTTAATTTAGC
51605736 TAGTTAATTTAG
1 TAGTTAATTTAG
51605748 TTTTAATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (13 bp):
TAGTTAATTTAGC
Found at i:51608869 original size:20 final size:19
Alignment explanation
Indices: 51608831--51608870 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
51608821 TAGATTTAAA
*
51608831 ATTTAGTTTTTTATATTTT
1 ATTTAGTTCTTTATATTTT
*
51608850 ATTTAGTTACTTTATTTTTT
1 ATTTAGTT-CTTTATATTTT
51608870 A
1 A
51608871 AATTTTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.70
Consensus pattern (19 bp):
ATTTAGTTCTTTATATTTT
Found at i:51609056 original size:29 final size:28
Alignment explanation
Indices: 51609005--51609087 Score: 80
Period size: 28 Copynumber: 2.9 Consensus size: 28
51608995 TTAATAAAAT
** *
51609005 AATTTTAAAAATTTAACATAAATTTTAA
1 AATTTTAAAAATAAAAAATAAATTTTAA
*
51609033 AATTTTAAAAATAAAAAATTAAATTCTTCA
1 AATTTTAAAAATAAAAAA-TAAATT-TTAA
51609063 AA--TTAAAAATATAAAAACTAAATTT
1 AATTTTAAAAATA-AAAAA-TAAATTT
51609088 CCAATCTCTC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
28 25 0.53
29 17 0.36
30 5 0.11
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (28 bp):
AATTTTAAAAATAAAAAATAAATTTTAA
Found at i:51609207 original size:22 final size:22
Alignment explanation
Indices: 51609182--51609228 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
51609172 AGATAGAAGC
*
51609182 TAGAAGTAGCATGAGAACAGCT
1 TAGAAGTAGCATGAGAACAACT
*
51609204 TAGAAGTAGCGTGAGAACAACT
1 TAGAAGTAGCATGAGAACAACT
51609226 TAG
1 TAG
51609229 CTCATAATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.19
Consensus pattern (22 bp):
TAGAAGTAGCATGAGAACAACT
Found at i:51610636 original size:27 final size:27
Alignment explanation
Indices: 51610578--51610647 Score: 69
Period size: 26 Copynumber: 2.7 Consensus size: 27
51610568 AGTAGAAGGC
*
51610578 TTATAAATA-AAAAATTAATAACTTTA
1 TTATAAATATAAAAATTAATAACTTAA
51610604 TT-TAAATATAATTAAA-TAATAA-TTAA
1 TTATAAATATAA--AAATTAATAACTTAA
*
51610630 TTATAAA-ATAAATATTAA
1 TTATAAATATAAAAATTAA
51610648 AGACCCTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
24 2 0.05
25 9 0.24
26 13 0.35
27 10 0.27
28 3 0.08
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (27 bp):
TTATAAATATAAAAATTAATAACTTAA
Found at i:51611596 original size:10 final size:10
Alignment explanation
Indices: 51611569--51611634 Score: 73
Period size: 9 Copynumber: 6.6 Consensus size: 10
51611559 CAAGTTAACA
51611569 TTTAATTAATT
1 TTTAA-TAATT
51611580 TTTAA-AATT
1 TTTAATAATT
*
51611589 TTTAAAAATAT
1 TTTAATAAT-T
* *
51611600 TTTTATACTT
1 TTTAATAATT
51611610 TTTAATAA-T
1 TTTAATAATT
51611619 TTTAATAATT
1 TTTAATAATT
51611629 TTTAAT
1 TTTAAT
51611635 TTATAAAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
9 18 0.38
10 17 0.36
11 12 0.26
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (10 bp):
TTTAATAATT
Found at i:51611630 original size:19 final size:19
Alignment explanation
Indices: 51611569--51611634 Score: 62
Period size: 19 Copynumber: 3.3 Consensus size: 19
51611559 CAAGTTAACA
51611569 TTTAATTAATTTTTAA-AATT
1 TTTAA-TAA-TTTTAATAATT
* * *
51611589 TTTAAAAATATTTTTATACTT
1 TTT-AATA-ATTTTAATAATT
51611610 TTTAATAATTTTAATAATT
1 TTTAATAATTTTAATAATT
51611629 TTTAAT
1 TTTAAT
51611635 TTATAAAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
19 16 0.43
20 12 0.32
21 9 0.24
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTAATAATTTTAATAATT
Found at i:51613839 original size:73 final size:73
Alignment explanation
Indices: 51613748--51613893 Score: 283
Period size: 73 Copynumber: 2.0 Consensus size: 73
51613738 CAACAATGGG
51613748 CAAGTCTAGGAAGAATAAAAGTATTGGTAATTGGAGAATTTACAATATATACTATATAGACACAT
1 CAAGTCTAGGAAGAATAAAAGTATTGGTAATTGGAGAATTTACAATATATACTATATAGACACAT
51613813 GATTTTTT
66 GATTTTTT
*
51613821 CAAGTCTAGGAAGAATAAAAGTATTGGTAATTGGAGAATTTACAATATATACTATATAGACACGT
1 CAAGTCTAGGAAGAATAAAAGTATTGGTAATTGGAGAATTTACAATATATACTATATAGACACAT
51613886 GATTTTTT
66 GATTTTTT
51613894 TAAAATGTAG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.34
Consensus pattern (73 bp):
CAAGTCTAGGAAGAATAAAAGTATTGGTAATTGGAGAATTTACAATATATACTATATAGACACAT
GATTTTTT
Found at i:51613994 original size:10 final size:10
Alignment explanation
Indices: 51613979--51614005 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
51613969 ATGCTTGTTC
51613979 AAGCTCGGTT
1 AAGCTCGGTT
51613989 AAGCTCGGTT
1 AAGCTCGGTT
51613999 AAGCTCG
1 AAGCTCG
51614006 TACTTTTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (10 bp):
AAGCTCGGTT
Found at i:51618380 original size:40 final size:40
Alignment explanation
Indices: 51618336--51618476 Score: 237
Period size: 40 Copynumber: 3.5 Consensus size: 40
51618326 TTGGCTCGGA
* * *
51618336 TATAACAACCAGCACGAATGCCTTCGGGACTTAACCTGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
51618376 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
*
51618416 TATAATAACCCGCACGAATGCCTTCGAGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
*
51618456 TATAGTAACCCGCACGAATGC
1 TATAATAACCCGCACGAATGC
51618477 TATGCACATA
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 96 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
Found at i:51625849 original size:37 final size:37
Alignment explanation
Indices: 51625799--51625872 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
51625789 TGATCCTTTC
51625799 TTGCATGGACCCTACCACGGAAGAATCAAAAAATGGG
1 TTGCATGGACCCTACCACGGAAGAATCAAAAAATGGG
*
51625836 TTGCATGGACCCTACCACGGCAGAATCAAAAAATGGG
1 TTGCATGGACCCTACCACGGAAGAATCAAAAAATGGG
51625873 GTTCTCCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.16
Consensus pattern (37 bp):
TTGCATGGACCCTACCACGGAAGAATCAAAAAATGGG
Found at i:51631481 original size:28 final size:27
Alignment explanation
Indices: 51631413--51631484 Score: 108
Period size: 28 Copynumber: 2.6 Consensus size: 27
51631403 ATTTGACTAA
*
51631413 GTTTAAAAAATTTTAGTTAAGGTCTAG
1 GTTTAAAAATTTTTAGTTAAGGTCTAG
* *
51631440 GTTTAATCAGTTTTTAGTTAAGGTCTAG
1 GTTTAA-AAATTTTTAGTTAAGGTCTAG
51631468 GTTTAAAAATTTTTAGT
1 GTTTAAAAATTTTTAGT
51631485 AACGGGTAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 15 0.38
28 24 0.62
ACGTcount: A:0.32, C:0.04, G:0.18, T:0.46
Consensus pattern (27 bp):
GTTTAAAAATTTTTAGTTAAGGTCTAG
Found at i:51632901 original size:20 final size:20
Alignment explanation
Indices: 51632854--51632907 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 20
51632844 TGCATTTAAT
51632854 TTTTTAAAAGTTTAATCATTC
1 TTTTTAAAA-TTTAATCATTC
*
51632875 TTTTTAAAATTATAATTATTC
1 TTTTTAAAATT-TAATCATTC
51632896 -TTTTAAAATTTA
1 TTTTTAAAATTTA
51632908 TGTTAAACGT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 2 0.06
20 12 0.39
21 17 0.55
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTTTAAAATTTAATCATTC
Found at i:51634569 original size:23 final size:23
Alignment explanation
Indices: 51634517--51634574 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
51634507 TAATATTTTT
51634517 ATATTTAAAATTATTTAATATAA
1 ATATTTAAAATTATTTAATATAA
* *
51634540 TTCATTTAATA-TATTTAATATTAA
1 AT-ATTTAAAATTATTTAATA-TAA
51634564 ATATTTTAAAA
1 ATA-TTTAAAA
51634575 AAATCGATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
23 11 0.39
24 17 0.61
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
ATATTTAAAATTATTTAATATAA
Found at i:51639468 original size:21 final size:20
Alignment explanation
Indices: 51639425--51639468 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
51639415 TTAATTTTTT
* *
51639425 AATCTAAACCTTAAATCTCG
1 AATCTAAACCCTAAACCTCG
*
51639445 AATCTAGAACCCTAAACCTTG
1 AATCTA-AACCCTAAACCTCG
51639466 AAT
1 AAT
51639469 TGTAAACTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.41, C:0.25, G:0.07, T:0.27
Consensus pattern (20 bp):
AATCTAAACCCTAAACCTCG
Found at i:51646729 original size:26 final size:26
Alignment explanation
Indices: 51646681--51646753 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
51646671 CCCGATATAT
*
51646681 GGCTCTTCATGAGGTTC-CTGATTAAA
1 GGCTCTTCATGAGCTTCTC-GATTAAA
* * *
51646707 GGCTCTTTATGAGCTTCTCGATTGAT
1 GGCTCTTCATGAGCTTCTCGATTAAA
*
51646733 GGCTCTCCA-GAGCTTCTCGAT
1 GGCTCTTCATGAGCTTCTCGAT
51646754 ATGACTCGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
25 12 0.30
26 27 0.68
27 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
GGCTCTTCATGAGCTTCTCGATTAAA
Found at i:51653997 original size:11 final size:11
Alignment explanation
Indices: 51653949--51653994 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
51653939 TTTGTATTTA
51653949 TTATG-TATCGT
1 TTATGTTAT-GT
51653960 TTATGTTATGT
1 TTATGTTATGT
*
51653971 TTATGTTATAT
1 TTATGTTATGT
*
51653982 TTTTGTTATGT
1 TTATGTTATGT
51653993 TT
1 TT
51653995 TTGCTATTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
11 28 0.90
12 3 0.10
ACGTcount: A:0.17, C:0.02, G:0.15, T:0.65
Consensus pattern (11 bp):
TTATGTTATGT
Found at i:51655448 original size:10 final size:10
Alignment explanation
Indices: 51655433--51655463 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
51655423 GGCCCGTCAT
51655433 CGGCCACCGC
1 CGGCCACCGC
51655443 CGGCCACCGC
1 CGGCCACCGC
51655453 CGGCCACCGC
1 CGGCCACCGC
51655463 C
1 C
51655464 CACGGTGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.10, C:0.61, G:0.29, T:0.00
Consensus pattern (10 bp):
CGGCCACCGC
Found at i:51657091 original size:49 final size:49
Alignment explanation
Indices: 51657012--51657422 Score: 671
Period size: 49 Copynumber: 8.6 Consensus size: 49
51657002 TATTTGAATA
51657012 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
51657059 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCCATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
51657108 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
51657157 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
51657206 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
51657253 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
51657302 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
51657349 AACGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
51657396 GATGTGGAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
51657423 TCCCGAAGGG
Statistics
Matches: 344, Mismatches: 14, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
47 153 0.44
48 1 0.00
49 190 0.55
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:51657120 original size:96 final size:96
Alignment explanation
Indices: 51657012--51657422 Score: 700
Period size: 96 Copynumber: 4.3 Consensus size: 96
51657002 TATTTGAATA
51657012 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
51657077 TATGTGATAAGGCCTAATGGCCCATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
51657108 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
51657173 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
51657206 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
51657271 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
51657302 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAACGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
51657365 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
51657396 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
51657423 TCCCGAAGGG
Statistics
Matches: 301, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
94 57 0.19
96 149 0.50
98 95 0.32
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:51659912 original size:38 final size:38
Alignment explanation
Indices: 51659848--51659922 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
51659838 AATCCGAGTT
*
51659848 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
51659886 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
51659923 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:51660035 original size:40 final size:40
Alignment explanation
Indices: 51659980--51660416 Score: 712
Period size: 40 Copynumber: 10.9 Consensus size: 40
51659970 CTCGACAATG
*
51659980 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
51660020 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
51660060 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
51660100 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
51660140 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
51660180 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
51660220 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
51660260 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
51660300 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * *
51660340 ATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
51660380 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
51660417 CATGTATTCG
Statistics
Matches: 376, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 376 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:51662809 original size:49 final size:47
Alignment explanation
Indices: 51662729--51663090 Score: 562
Period size: 47 Copynumber: 7.6 Consensus size: 47
51662719 TATTTGAATA
51662729 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
51662776 AATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
51662825 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
51662874 ACTGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
51662921 AATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTG-AAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
51662970 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
51663017 AACGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
51663064 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
51663091 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 19, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
47 152 0.52
48 6 0.02
49 134 0.46
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:51662834 original size:96 final size:94
Alignment explanation
Indices: 51662729--51663090 Score: 562
Period size: 96 Copynumber: 3.8 Consensus size: 94
51662719 TATTTGAATA
51662729 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
51662794 TATATGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
51662825 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGACTGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
51662890 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
51662921 AATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTG-AAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
51662986 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
51663017 AACGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
51663082 TGTGATAAG
66 TGTGATAAG
51663091 TCCCGAAGGG
Statistics
Matches: 246, Mismatches: 16, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
94 59 0.24
95 3 0.01
96 133 0.54
97 3 0.01
98 48 0.20
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:51672286 original size:64 final size:64
Alignment explanation
Indices: 51672206--51672428 Score: 358
Period size: 64 Copynumber: 3.5 Consensus size: 64
51672196 ACAAACTTAG
51672206 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
1 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
51672270 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
1 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
* * * *
51672334 CATTGTAATATAAATTTTTTTATATAAATTAAATGCATTACAA-CATTAATCTAATTGGAACAAA
1 CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCA-TAATCTAATTGGAACAAA
* * * *
51672398 CTTTGTAACATAATTTTTTTTATATAAATTA
1 CTTTGTAATATAAATTATGTTATATAAATTA
51672429 CATAAACTCG
Statistics
Matches: 151, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
63 2 0.01
64 149 0.99
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.39
Consensus pattern (64 bp):
CTTTGTAATATAAATTATGTTATATAAATTAAATACATTACAACCATAATCTAATTGGAACAAA
Found at i:51674913 original size:22 final size:22
Alignment explanation
Indices: 51674887--51674934 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
51674877 TTTACTCTAT
* *
51674887 AATTTCAATTGTACGAAGACTA
1 AATTTCAAATATACGAAGACTA
*
51674909 AATTTCAAATATATGAAGACTA
1 AATTTCAAATATACGAAGACTA
51674931 AATT
1 AATT
51674935 CCTGAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.33
Consensus pattern (22 bp):
AATTTCAAATATACGAAGACTA
Found at i:51677625 original size:21 final size:19
Alignment explanation
Indices: 51677601--51677656 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 19
51677591 TTAACAAATA
51677601 TAAAAATTATAAAAAAATTCT
1 TAAAAATTATAAAAAAA--CT
*
51677622 TAAAGAATATATAAAAAAAGT
1 TAAA-AAT-TATAAAAAAACT
51677643 TAAAAATTA-AAAAA
1 TAAAAATTATAAAAA
51677657 TCTAGAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
18 5 0.16
19 2 0.06
20 3 0.09
21 9 0.28
22 3 0.09
23 10 0.31
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.27
Consensus pattern (19 bp):
TAAAAATTATAAAAAAACT
Found at i:51682717 original size:15 final size:15
Alignment explanation
Indices: 51682685--51682714 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
51682675 CAATAAAATA
51682685 AAACTCATTAACTCC
1 AAACTCATTAACTCC
51682700 AAACTCCATTAACTC
1 AAACT-CATTAACTC
51682715 AAAATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.27
Consensus pattern (15 bp):
AAACTCATTAACTCC
Found at i:51683094 original size:2 final size:2
Alignment explanation
Indices: 51683087--51683154 Score: 118
Period size: 2 Copynumber: 34.0 Consensus size: 2
51683077 AGCATAAAGC
51683087 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* *
51683129 GA GA GA GA GA GA GA CA GA GA GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
51683155 AGGAGAGGCT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.49, C:0.01, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:51692370 original size:19 final size:19
Alignment explanation
Indices: 51692348--51692384 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
51692338 AATATGTAAT
*
51692348 TAGCTAATTACTATGGATA
1 TAGCTAATTACTAGGGATA
*
51692367 TAGCTGATTACTAGGGAT
1 TAGCTAATTACTAGGGAT
51692385 TTAATTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.35
Consensus pattern (19 bp):
TAGCTAATTACTAGGGATA
Found at i:51700390 original size:25 final size:26
Alignment explanation
Indices: 51700356--51700406 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
51700346 CACCGCTGAA
*
51700356 TCGGGGAATCA-CACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
51700381 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
51700407 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.29, C:0.35, G:0.22, T:0.14
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:51700535 original size:105 final size:103
Alignment explanation
Indices: 51700324--51700589 Score: 428
Period size: 105 Copynumber: 2.6 Consensus size: 103
51700314 TAACCGTTAT
* **
51700324 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCA-CACTTAGCAACCCCTCGGGGA
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
51700388 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
51700426 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
51700491 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
* **
51700531 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
51700590 TTATATACAA
Statistics
Matches: 152, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
102 39 0.26
103 16 0.11
104 25 0.16
105 71 0.47
106 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:51700947 original size:28 final size:29
Alignment explanation
Indices: 51700915--51700977 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
51700905 TAATCCACCA
51700915 CCCAACTTTTTG-AAAATTACAATTTTG-C
1 CCCAAC-TTTTGCAAAATTACAATTTTGTC
* *
51700943 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGTC
51700973 CCCAA
1 CCCAA
51700978 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 8 0.27
29 18 0.60
30 4 0.13
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGTC
Found at i:51700951 original size:29 final size:30
Alignment explanation
Indices: 51700922--51700977 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
51700912 CCACCCAACT
51700922 TTTTG-AAAATTACAATTTTG-CCCCAAAC
1 TTTTGCAAAATTACAATTTTGTCCCCAAAC
* *
51700950 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGTCCCCAA
51700978 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.21
29 13 0.54
30 6 0.25
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGTCCCCAAAC
Found at i:51707865 original size:25 final size:25
Alignment explanation
Indices: 51707837--51707884 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
51707827 CGCTGAATCG
*
51707837 GGGAATCAGCACTTAGCAACCCCTC
1 GGGAATCAGCACATAGCAACCCCTC
51707862 GGGAATCAGCACATAGCAACCCC
1 GGGAATCAGCACATAGCAACCCC
51707885 CTTTCACATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.35, G:0.21, T:0.12
Consensus pattern (25 bp):
GGGAATCAGCACATAGCAACCCCTC
Found at i:51708013 original size:104 final size:104
Alignment explanation
Indices: 51707802--51708169 Score: 627
Period size: 104 Copynumber: 3.6 Consensus size: 104
51707792 TAACCGTTAT
* ** *
51707802 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTC--GGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
51707865 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
51707904 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
51707969 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
51708008 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
51708073 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* * **
51708112 TGGTGGATCA-CGCACATAGCACCACC-ATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCT
51708170 TTATATACAA
Statistics
Matches: 255, Mismatches: 8, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
102 56 0.22
103 29 0.11
104 169 0.66
105 1 0.00
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:51708529 original size:29 final size:29
Alignment explanation
Indices: 51708496--51708559 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
51708486 TAATCCACCA
51708496 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
51708525 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
51708555 CCCAA
1 CCCAA
51708560 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:51708533 original size:30 final size:30
Alignment explanation
Indices: 51708503--51708559 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
51708493 CCACCCAACT
51708503 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
51708532 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
51708560 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:51720704 original size:24 final size:24
Alignment explanation
Indices: 51720651--51720711 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
51720641 AACTGTATTT
* * *
51720651 GCACACATAGTGCTAATTACACTC
1 GCACACATAGTGCCAAGTAAACTC
*
51720675 GTACACATAGTGCCATAGTAAAC-C
1 GCACACATAGTGCCA-AGTAAACTC
51720699 GCACACATAGTGC
1 GCACACATAGTGC
51720712 ATTGGATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 26 0.84
25 5 0.16
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.21
Consensus pattern (24 bp):
GCACACATAGTGCCAAGTAAACTC
Found at i:51727899 original size:24 final size:24
Alignment explanation
Indices: 51727871--51727931 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
51727861 AACTGTATTT
* * *
51727871 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTAAAC-C
51727895 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
51727919 GCACACATAGTGC
1 GCACACATAGTGC
51727932 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Done.