Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 191 of 343
Found at i:63298429 original size:50 final size:50
Alignment explanation
Indices: 63298354--63298736 Score: 417
Period size: 50 Copynumber: 7.6 Consensus size: 50
63298344 CGGGTATGCA
* * *
63298354 TAGTAGCCTGCACTTAGTACTACACATGCGACGTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * *
63298404 TAGTAGCCTGCACTTAGTACTACACATGTGACTTATCCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * * *
63298454 TAGTAGCCTGCAATTAGTACTACACATGCGTCCTATCAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * * *
63298504 TAGTAGCATGCACTTAGGACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* ** * * *
63298554 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTATC-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTAACAATCTG-GTACACG
* ** *
63298605 TAGCAGCCTATACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * *** *
63298655 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACTATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACAATCTGGTACACG
*
63298707 TAGTAGCCTGCACATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
63298737 TTATCACAAC
Statistics
Matches: 277, Mismatches: 51, Indels: 8
0.82 0.15 0.02
Matches are distributed among these distances:
50 200 0.72
51 38 0.14
52 39 0.14
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
Found at i:63302980 original size:53 final size:51
Alignment explanation
Indices: 63302913--63303287 Score: 451
Period size: 47 Copynumber: 7.5 Consensus size: 51
63302903 TGAACATGCG
*
63302913 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTTGTATATATA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC-TG-ATATATA
**
63302966 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC--AT-T-CG
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTGATATATA
* *
63303013 TATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACCTGTATATATA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-CTG-ATATATA
**
63303066 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC--AT-T-CG
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTGATATATA
*
63303113 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-CTG-ATATATA
**
63303166 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC--ATGCATA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTGATATATA
*
63303215 TAT--GAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC--ATGA-ATA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTGAT-ATATA
* *
63303262 TAT--GTGGTAAGGCCGAATGGCTAATG
1 TATGCGTGATAAGGCCGAATGGCCAATG
63303288 CGAAACGTGT
Statistics
Matches: 287, Mismatches: 22, Indels: 32
0.84 0.06 0.09
Matches are distributed among these distances:
47 143 0.50
48 4 0.01
49 12 0.04
51 4 0.01
52 4 0.01
53 120 0.42
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (51 bp):
TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTGATATATA
Found at i:63303007 original size:100 final size:100
Alignment explanation
Indices: 63302891--63303264 Score: 658
Period size: 100 Copynumber: 3.7 Consensus size: 100
63302881 TTAGGATTTT
* *
63302891 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACT
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
63302956 TGTATATATATATGCGTGATAAGGCCGAATGGCCA
66 TGTATATATATATGCGTGATAAGGCCGAATGGCCA
* *
63302991 ATGTGATGAATGTGAACATTCGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
63303056 TGTATATATATATGCGTGATAAGGCCGAATGGCCA
66 TGTATATATATATGCGTGATAAGGCCGAATGGCCA
*
63303091 ATGTGATGAATGTGAACATTCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
63303156 TGTATATATATATGCGTGATAAGGCCGAATGGCCA
66 TGTATATATATATGCGTGATAAGGCCGAATGGCCA
* * * *
63303191 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
63303256 TGAATATAT
66 TGTATATAT
63303265 GTGGTAAGGC
Statistics
Matches: 263, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 263 1.00
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (100 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
TGTATATATATATGCGTGATAAGGCCGAATGGCCA
Found at i:63303328 original size:46 final size:46
Alignment explanation
Indices: 63303261--63303351 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
63303251 GAACATGAAT
* * *
63303261 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
63303307 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
63303352 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.33, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:63303547 original size:37 final size:37
Alignment explanation
Indices: 63303497--63303640 Score: 234
Period size: 37 Copynumber: 3.9 Consensus size: 37
63303487 AAATATATTT
*
63303497 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTTTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
* *
63303534 CGGGTAAGACCCGATGACTACGTGTGAAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
63303571 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
* * *
63303608 CGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTT
63303641 CGTCTGAGCT
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
Found at i:63305782 original size:15 final size:15
Alignment explanation
Indices: 63305758--63305802 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
63305748 AAATAGGATT
*
63305758 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
*
63305773 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
63305788 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
63305803 CAATATCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.56, C:0.13, G:0.18, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:63310271 original size:105 final size:105
Alignment explanation
Indices: 63310089--63310301 Score: 331
Period size: 105 Copynumber: 2.0 Consensus size: 105
63310079 AAAACTAAGT
* *
63310089 GAATAACTCTAAAGAATAATGATGGGTTGGAAATTGTTGTTGGTAGTGAAAGACTGGGTTTTATG
1 GAATAACTCTAAAGAATAATGATAGGTTGGAAATTATTGTTGGTAGTGAAAGACTGGGTTTTATG
*
63310154 TATAATGTGGTTTC-GACAATGAAGGCTGAAATGATTATGG
66 TATAATGTGGTTTCTG-CAATGAAGGCTGAAAAGATTATGG
* *
63310194 GAATAACTCTAAGGAATAATGATAGGTTGGAAATTATTGTTGGTGGTGAAAGA-TCGGGTTTTAT
1 GAATAACTCTAAAGAATAATGATAGGTTGGAAATTATTGTTGGTAGTGAAAGACT-GGGTTTTAT
* *
63310258 GTCTAATGTGGTTTCTGCTATGAAGGCTGAAAAGATTATGG
65 GTATAATGTGGTTTCTGCAATGAAGGCTGAAAAGATTATGG
63310299 GAA
1 GAA
63310302 AAGGTTGTAG
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
104 1 0.01
105 97 0.98
106 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.33
Consensus pattern (105 bp):
GAATAACTCTAAAGAATAATGATAGGTTGGAAATTATTGTTGGTAGTGAAAGACTGGGTTTTATG
TATAATGTGGTTTCTGCAATGAAGGCTGAAAAGATTATGG
Found at i:63311875 original size:6 final size:6
Alignment explanation
Indices: 63311865--63311901 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
63311855 AAGGAGATTT
* *
63311865 TGATGT TGATGT TGATGG TGATGG TGATGG TGATGG T
1 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG T
63311902 ATCTTAAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.16, C:0.00, G:0.43, T:0.41
Consensus pattern (6 bp):
TGATGG
Found at i:63317382 original size:390 final size:389
Alignment explanation
Indices: 63316638--63317801 Score: 1548
Period size: 390 Copynumber: 3.0 Consensus size: 389
63316628 CCACGTCGCG
* * * *
63316638 TGAACTTTTGATTTCTTGGGC-TTCCCTCTATCATCAAATGAGAATTAAATGAACTCTTCGACCT
1 TGAACTTTTGATTGCTTGAGCTTTCCCTCTATCATCGAATGAGAATTAAACGAACTCTTCGACCT
* * *
63316702 CTTCAGTTGGCATCTCTTCAATCTTGGCCAGAAAGTGTATTGGATCTTCTACACTTTCATTTAGA
66 TTTCAGTTGGCATCTCTTCAATCTTGGCCAGAAAGTGTATTGGCTCTTCTACACTTTCATTCAGA
* *
63316767 ATCAGTTTAAGCTCCATGGTAGTGGTTAGATTATCTGTTACTTCTACATCTACAGTAACATTTGC
131 ATCAGTTTAAGCTCCATGGTAGTGGTTAGATCATCTGTTACTTCTACATCTACAGTTACATTTGC
* ** * * * *
63316832 TGCTATGTCAATTATATTGGAGATTGCTTCAATTATATTCCAATCATCTCCATGATCTAC-GGTT
196 TGCTATGTCAATT-GATTGGAGACCGCTTCAACTATATTCAAATCATCCCCATGATCT-CTAGTT
* * *
63316896 CCAAACTCTTGTTGAATTTCACCATTAAACTCATCATGGTTGACGATAGTACAAAGGTCCTTATG
259 CCAGACTCTTGTTTAATTTCACCATTAAACTCATCATGGTTGACGATAGTACAAAGGTCCTCATG
* * *
63316961 ATCAAAATT-GAGAACATCATGCACGACCTCTTTCAATTGAGGCAGTGCCTCAGATATTTATAGG
324 ATCAAAATTGGA-AACATCATGCACGACCTCTTTCAGTGGAGGCAGCGCCTCAGATATTTATAGG
63317025 AA
388 AA
* * *
63317027 TGAACTTTTGATTGCTCGAGCTTTCACTCTATCATCGAATGAGAATGAAACGAACTCTTCGACCT
1 TGAACTTTTGATTGCTTGAGCTTTCCCTCTATCATCGAATGAGAATTAAACGAACTCTTCGACCT
* * * *
63317092 TTTCGGTTGGAACCTCTTCAATCTTGGCCAGAAAGTGTATTGGCTCTTCTACACTTTCATTCAAA
66 TTTCAGTTGGCATCTCTTCAATCTTGGCCAGAAAGTGTATTGGCTCTTCTACACTTTCATTCAGA
* * * *
63317157 ACCAGTTTAAGCTCTAAGGTAGTGGTTAGATCATCTGTTACTTCTACATCTACAGTTGCATTTGC
131 ATCAGTTTAAGCTCCATGGTAGTGGTTAGATCATCTGTTACTTCTACATCTACAGTTACATTTGC
** ** *
63317222 TATTATGTCAATTGGATTGGAGACCATTTCAACTATATTCAAATCATCCCCTTGATCTCTAGTTC
196 TGCTATGTCAATT-GATTGGAGACCGCTTCAACTATATTCAAATCATCCCCATGATCTCTAGTTC
* * *
63317287 CAGACTCTTATTTAATTTCACCATTAAACTCATCATGGTTGATGATAGTACAAAGATCCTCATGA
260 CAGACTCTTGTTTAATTTCACCATTAAACTCATCATGGTTGACGATAGTACAAAGGTCCTCATGA
* * * * * **
63317352 TCAGAATTGGAAACATCATGCACGACCTCTTTCAGTGGAGGTAACGCCTCAGATATTTGTTGGCG
325 TCAAAATTGGAAACATCATGCACGACCTCTTTCAGTGGAGGCAGCGCCTCAGATATTTATAGGAA
* ** * **
63317417 TGAAGTTTCAATTGCTTGAGCTTTCCCTCTATCATCGAATGAGAATTTTAAACAAACTCTTTAAC
1 TGAACTTTTGATTGCTTGAGCTTTCCCTCTATCATCGAATGAGAA--TTAAACGAACTCTTCGAC
* * *
63317482 CTCTTT-AGTTGGCATATCTTCAATCTTGGCCAGAAATTGTATTGGCTTTTCTACACTTTCATTC
64 CT-TTTCAGTTGGCATCTCTTCAATCTTGGCCAGAAAGTGTATTGGCTCTTCTACACTTTCATTC
* * * *
63317546 AGAATCAGTTTAAGCTCCATGGTAATGGTTAGATGATCTATTACTTCTACAT-TGACGGTTACAT
128 AGAATCAGTTTAAGCTCCATGGTAGTGGTTAGATCATCTGTTACTTCTACATCT-ACAGTTACAT
* *
63317610 TTGCTGCTACGTCAATATGATTGGAGACCGCTTCAACTATATTCAAATCATCCTCATGATCTCTA
192 TTGCTGCTATGTCAAT-TGATTGGAGACCGCTTCAACTATATTCAAATCATCCCCATGATCTCTA
* * * * *
63317675 ATTTCTGACTCTTGTTTAATTTCACCATTAAACTCATCATGGTTGACCATAGTACATAGGTCCTC
256 GTTCCAGACTCTTGTTTAATTTCACCATTAAACTCATCATGGTTGACGATAGTACAAAGGTCCTC
* * * *
63317740 ATGATTAAAATTTGG-AACATCATGCACAACCTCTTTCAGTGGAGGCAGCGCATCAAATATTT
321 ATGATCAAAA-TTGGAAACATCATGCACGACCTCTTTCAGTGGAGGCAGCGCCTCAGATATTT
63317802 TTTAAAGCAT
Statistics
Matches: 671, Mismatches: 95, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
389 19 0.03
390 357 0.53
391 3 0.00
392 284 0.42
393 8 0.01
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (389 bp):
TGAACTTTTGATTGCTTGAGCTTTCCCTCTATCATCGAATGAGAATTAAACGAACTCTTCGACCT
TTTCAGTTGGCATCTCTTCAATCTTGGCCAGAAAGTGTATTGGCTCTTCTACACTTTCATTCAGA
ATCAGTTTAAGCTCCATGGTAGTGGTTAGATCATCTGTTACTTCTACATCTACAGTTACATTTGC
TGCTATGTCAATTGATTGGAGACCGCTTCAACTATATTCAAATCATCCCCATGATCTCTAGTTCC
AGACTCTTGTTTAATTTCACCATTAAACTCATCATGGTTGACGATAGTACAAAGGTCCTCATGAT
CAAAATTGGAAACATCATGCACGACCTCTTTCAGTGGAGGCAGCGCCTCAGATATTTATAGGAA
Found at i:63318650 original size:24 final size:24
Alignment explanation
Indices: 63318618--63318666 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
63318608 CAACCTAGAA
63318618 TTAATTGAAAATCTAATTATTAAC
1 TTAATTGAAAATCTAATTATTAAC
63318642 TTAATTGAAAATCTAATTATTAAC
1 TTAATTGAAAATCTAATTATTAAC
63318666 T
1 T
63318667 AAGTTAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAATTGAAAATCTAATTATTAAC
Found at i:63322298 original size:21 final size:21
Alignment explanation
Indices: 63322256--63322298 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
63322246 CATAGGCATA
*
63322256 TCCCTTAGTCACACGAGTGTG
1 TCCCTTAGTCACACGAGCGTG
63322277 TCCCTTAGTCACAC-AGCCGTG
1 TCCCTTAGTCACACGAG-CGTG
63322298 T
1 T
63322299 GCCTCTCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.19, C:0.33, G:0.21, T:0.28
Consensus pattern (21 bp):
TCCCTTAGTCACACGAGCGTG
Found at i:63334507 original size:34 final size:34
Alignment explanation
Indices: 63334454--63334526 Score: 128
Period size: 34 Copynumber: 2.1 Consensus size: 34
63334444 TCATTTGACA
*
63334454 AAAAGTTAACCATACTAAATTTATTATTAATTTT
1 AAAACTTAACCATACTAAATTTATTATTAATTTT
*
63334488 AAAACTTAACCATATTAAATTTATTATTAATTTT
1 AAAACTTAACCATACTAAATTTATTATTAATTTT
63334522 AAAAC
1 AAAAC
63334527 AATATATCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.47, C:0.10, G:0.01, T:0.42
Consensus pattern (34 bp):
AAAACTTAACCATACTAAATTTATTATTAATTTT
Found at i:63342935 original size:41 final size:43
Alignment explanation
Indices: 63342886--63342979 Score: 104
Period size: 41 Copynumber: 2.2 Consensus size: 43
63342876 TGTGGTTACG
* * *
63342886 TGTAAGACCATGTTTAGGACA-TCGACATCG-TATTTGAT-TCA
1 TGTAAGACCATGTCTAGGACAGT-GACATCGATATGTGATAGCA
* * *
63342927 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAGCA
1 TGTAAGACCATGTCTAGGACAGTGACATCGATATGTGATAGCA
63342970 TGTAAGACCA
1 TGTAAGACCA
63342980 CATCTAAGAC
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
41 24 0.56
42 8 0.19
43 11 0.26
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACAGTGACATCGATATGTGATAGCA
Found at i:63346374 original size:47 final size:47
Alignment explanation
Indices: 63346256--63346424 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 47
63346246 GGATGATTGA
*
63346256 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
63346304 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
*
63346347 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
63346396 -C--CTGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
63346425 GCTTATGGGC
Statistics
Matches: 104, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 26 0.25
45 3 0.03
46 30 0.29
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:63353634 original size:46 final size:46
Alignment explanation
Indices: 63353584--63353757 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
63353574 TGATTGAGCA
63353584 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63353630 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
63353675 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
63353723 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTAT
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
63353758 TGGCGGGTTA
Statistics
Matches: 109, Mismatches: 9, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 59 0.54
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63353740 original size:93 final size:93
Alignment explanation
Indices: 63353581--63353752 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
63353571 GGATGATTGA
*
63353581 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
63353646 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
63353674 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
63353738 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
63353753 CTTATTGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63363616 original size:46 final size:46
Alignment explanation
Indices: 63363556--63363729 Score: 142
Period size: 46 Copynumber: 3.8 Consensus size: 46
63363546 AGATTATTGT
* * *
63363556 GAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCATATTATAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-C-TATGATAA
* * * *
63363602 GAGCCAGTGTAAGACCATGTCTGCGACATGGCATTGG-TGTTGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-AT--GATAA
* * * * * *
63363650 GTGCTACTGTAAGA-CATGTTTGGGACAT-GCATCGGCTATGAGAG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGATAA
*
63363694 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
63363730 ACACAGATAT
Statistics
Matches: 100, Mismatches: 20, Indels: 16
0.74 0.15 0.12
Matches are distributed among these distances:
44 14 0.14
45 14 0.14
46 27 0.27
47 25 0.25
48 20 0.20
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (46 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGATAA
Found at i:63363725 original size:92 final size:94
Alignment explanation
Indices: 63363558--63363727 Score: 272
Period size: 92 Copynumber: 1.8 Consensus size: 94
63363548 ATTATTGTGA
* * *
63363558 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCATATTATAAGAGCCAGTGTAAGACCATGTC
1 GCTACTGTAAGACATGTTTGGGACATGCATCGGCCATATGAGAAGAGCCAGTGTAAGACCATGTC
63363623 TGCGACATGGCATTGGTGTTGAGATGAGT
66 TGCGACATGGCATTGGTGTTGAGATGAGT
* *
63363652 GCTACTGTAAGACATGTTTGGGACATGCATCGG-C-TATGAGAGGTGCCAGTGTAAGACCATGTC
1 GCTACTGTAAGACATGTTTGGGACATGCATCGGCCATATGAGAAGAGCCAGTGTAAGACCATGTC
*
63363715 TGGGACATGGCAT
66 TGCGACATGGCAT
63363728 CGACACAGAT
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 37 0.53
93 1 0.01
94 32 0.46
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (94 bp):
GCTACTGTAAGACATGTTTGGGACATGCATCGGCCATATGAGAAGAGCCAGTGTAAGACCATGTC
TGCGACATGGCATTGGTGTTGAGATGAGT
Found at i:63363755 original size:94 final size:94
Alignment explanation
Indices: 63363556--63363763 Score: 233
Period size: 94 Copynumber: 2.2 Consensus size: 94
63363546 AGATTATTGT
* * *
63363556 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCATATTATAAGAGCCAGTGTAAGACCATG
1 GAGCTACTGTAAGACATGTTTGGGACATGCATCGGCCATATGAGAAGAGCCAGTGTAAGACCATG
* *****
63363621 TCTGCGACATGGCATTGGTGTTGAGATGA
66 TCTGCGACATGGCATCGACACAGAGATGA
* * *
63363650 GTGCTACTGTAAGACATGTTTGGGACATGCATCGG-C-TATGAGAGGTGCCAGTGTAAGACCATG
1 GAGCTACTGTAAGACATGTTTGGGACATGCATCGGCCATATGAGAAGAGCCAGTGTAAGACCATG
* *
63363713 TCTGGGACATGGCATCGACACAGATATGCTA
66 TCTGCGACATGGCATCGACACAGAGATG--A
63363744 GAGCTTA-TGTAAGACCATGT
1 GAGC-TACTGTAAGA-CATGT
63363764 CTAGGACGTG
Statistics
Matches: 95, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
92 43 0.45
93 1 0.01
94 44 0.46
95 7 0.07
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (94 bp):
GAGCTACTGTAAGACATGTTTGGGACATGCATCGGCCATATGAGAAGAGCCAGTGTAAGACCATG
TCTGCGACATGGCATCGACACAGAGATGA
Found at i:63374843 original size:47 final size:45
Alignment explanation
Indices: 63374731--63374908 Score: 151
Period size: 46 Copynumber: 3.8 Consensus size: 45
63374721 GGGTTATTGT
* * * *
63374731 GAGCTAGTGTAAGACATGTCTGGCACATGCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAGA-GATGA
* * * *
63374777 GGGCGAGTATAAGACCATGTCTGGGACATGGCATCGGCGTTGAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TAGAGATGA
* * * * *
63374825 GTGCTAGTGTAAGACATGTTTGGGACATGCATTGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTAGAGATG-A
* * *
63374872 -AGCCAGTGTAAGACATGTTTGGGACATGCATTGGCTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTA
63374909 CTAGAGGTGT
Statistics
Matches: 109, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
45 2 0.02
46 55 0.50
47 28 0.26
48 23 0.21
49 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAGAGATGA
Found at i:63374889 original size:46 final size:44
Alignment explanation
Indices: 63374825--63374944 Score: 161
Period size: 46 Copynumber: 2.7 Consensus size: 44
63374815 GTTGAGATGA
*
63374825 GTGCTAGTGTAAGACATGTTTGGGACATGCATTGGCCT-CGAGAC
1 GTGCCAGTGTAAGACATGTTTGGGACATGCATTGG-CTACGAGAC
* *
63374869 GTAAGCCAGTGTAAGACATGTTTGGGACATGCATTGGCTACTAGAG
1 GT--GCCAGTGTAAGACATGTTTGGGACATGCATTGGCTACGAGAC
*
63374915 GTGTCAGTGTAAGACCATGTTTGGGACATG
1 GTGCCAGTGTAAGA-CATGTTTGGGACATG
63374945 GTATCAACAC
Statistics
Matches: 68, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
44 13 0.19
45 17 0.25
46 38 0.56
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.28
Consensus pattern (44 bp):
GTGCCAGTGTAAGACATGTTTGGGACATGCATTGGCTACGAGAC
Found at i:63377748 original size:20 final size:20
Alignment explanation
Indices: 63377719--63377765 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
63377709 ATTTTGATAA
*
63377719 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
63377739 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63377759 ACGTGAT
1 ACATGAT
63377766 GTAATCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63377846 original size:23 final size:23
Alignment explanation
Indices: 63377816--63377957 Score: 239
Period size: 23 Copynumber: 6.1 Consensus size: 23
63377806 AGGAAGTGAA
63377816 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
63377839 AAAGGGCTTGTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
63377862 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
63377885 AAAGGGCTTATGCACCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
63377908 AAAGGGCTCATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
63377931 AAAGGGGCTTTTGCCCCAGTTATT
1 AAA-GGGCTTATGCCCCAGTTATT
63377955 AAA
1 AAA
63377958 AGAGGCTAGG
Statistics
Matches: 111, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
23 90 0.81
24 21 0.19
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:63382723 original size:37 final size:37
Alignment explanation
Indices: 63382673--63382746 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
63382663 TCATTCCATC
* * *
63382673 AGATTTACTAGTAACTATGCACTTTTCTTTAGTGAAA
1 AGATTTAATAGTAACTATACACTTGTCTTTAGTGAAA
63382710 AGATTTAATAGTAACTATACACTTGTCTTTAGTGAAA
1 AGATTTAATAGTAACTATACACTTGTCTTTAGTGAAA
63382747 TTAACAAGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (37 bp):
AGATTTAATAGTAACTATACACTTGTCTTTAGTGAAA
Found at i:63385229 original size:20 final size:20
Alignment explanation
Indices: 63385200--63385237 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
63385190 CCCTTTGTGC
*
63385200 AAATTTATTGAAAATTATCA
1 AAATTAATTGAAAATTATCA
*
63385220 AAATTAATTGAAATTTAT
1 AAATTAATTGAAAATTAT
63385238 TATAAAATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (20 bp):
AAATTAATTGAAAATTATCA
Found at i:63385250 original size:22 final size:23
Alignment explanation
Indices: 63385213--63385256 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
63385203 TTTATTGAAA
* *
63385213 ATTATCAAAATTAATTGAAATTT
1 ATTATCAAAATCAATTAAAATTT
63385236 ATTAT-AAAATCAATTAAAATT
1 ATTATCAAAATCAATTAAAATT
63385257 CAACATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (23 bp):
ATTATCAAAATCAATTAAAATTT
Found at i:63392644 original size:40 final size:40
Alignment explanation
Indices: 63392574--63392795 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
63392564 ACACCAAGTA
** * *
63392574 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
63392613 TCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
63392653 CCTTCGGGACATAGCCCGGTTATAATAACTCCCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
63392693 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
63392733 CCTTCGGGACTTAGCCCGGATT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATG
63392773 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
63392796 CATCCGAATA
Statistics
Matches: 161, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 13 0.08
40 147 0.91
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:63400625 original size:40 final size:40
Alignment explanation
Indices: 63400574--63400768 Score: 259
Period size: 40 Copynumber: 4.9 Consensus size: 40
63400564 AGATATAGCT
* * *
63400574 ACTCGCTCAAATGTCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
*
63400614 ACTGGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
* **
63400654 ACTCCCACAAATGCCTTCGGG-CTTAGCCCGAATATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
* * *
63400693 ACTCGCACAAATGCCTTCGGGACTTAGCTCGGATT-TAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAATA
* *
63400733 ACTAGCACAAATGTCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63400769 CATCCGAATA
Statistics
Matches: 135, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 38 0.28
40 96 0.71
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
Found at i:63400679 original size:79 final size:80
Alignment explanation
Indices: 63400581--63400768 Score: 263
Period size: 79 Copynumber: 2.4 Consensus size: 80
63400571 GCTACTCGCT
* *
63400581 CAAATGTCTTCGGGACTTAGCCCGGTTATAGTAACTGGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGTCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
63400646 -TTATAATAACTCCCA
66 ATT-TAATAACTACCA
* ** *
63400661 CAAATGCCTTCGGG-CTTAGCCCGAATATAATAACTCGCACAAATGCCTTCGGGACTTAGCTCGG
1 CAAATGTCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* * *
63400725 ATTTAGTCACTAGCA
66 ATTTAATAACTACCA
63400740 CAAATGTCTTCGGGACTTAGCCCGGTTAT
1 CAAATGTCTTCGGGACTTAGCCCGGTTAT
63400769 CATCCGAATA
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
79 66 0.71
80 27 0.29
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
CAAATGTCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATTTAATAACTACCA
Found at i:63405018 original size:24 final size:24
Alignment explanation
Indices: 63404991--63405038 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
63404981 TTTTCTATTA
63404991 GCTGAAATATTGGAAGAACTATGT
1 GCTGAAATATTGGAAGAACTATGT
63405015 GCTGAAATATTGGAAGAACTATGT
1 GCTGAAATATTGGAAGAACTATGT
63405039 TCTATACAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (24 bp):
GCTGAAATATTGGAAGAACTATGT
Found at i:63410187 original size:96 final size:91
Alignment explanation
Indices: 63409920--63410290 Score: 297
Period size: 94 Copynumber: 3.9 Consensus size: 91
63409910 GGGTCATTTG
* * *
63409920 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGAGCCAGTGTAGGACCA
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGACC-GA-TATGTAGAGCCAGTGTAAGACCA
*
63409984 TGTCTGGGACATGGCATCGA-CATTGAGACA
64 TGTCTGGGACATGGCATCAACCA-TGAG--A
* * * * * *
63410014 AGAGCTAGTGTAAGACATGTATGGGACATGCATTGGCCTCGAGATGTA-AGCCAGTGTAAGACCA
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCA-TCGAC-CGATATGTAGAGCCAGTGTAAGACCA
* **
63410078 TGTTTGGTTCATGGCATCAACCATGAGA
64 TGTCTGGGACATGGCATCAACCATGAGA
* *
63410106 TGTGTTAGTGTAAGACCATGTTTGGGACATGGCATCGACACGGATATGTAAGAGCCAGTGTAAGA
1 TGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-C-GATATGT-AGAGCCAGTGTAAGA
* * *
63410171 CCATGTCTGGGACATGGCGTCAGCCTTAATCGCGA
61 CCATGTCTGGGACATGGCATCAACC---AT-GAGA
* * *
63410206 TG-G-TCAATGTAAGACCATGTCTGGGACATGGCTTCGA-C-TTGATGTATGAGCCAGTGTAAGA
1 TGTGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCGAT-ATGTA-GAGCCAGTGTAAGA
* *
63410267 CCATGTTTGAGACATGGCATCAAC
61 CCATGTCTGGGACATGGCATCAAC
63410291 ATCCTACCCT
Statistics
Matches: 227, Mismatches: 34, Indels: 30
0.78 0.12 0.10
Matches are distributed among these distances:
92 13 0.06
93 17 0.07
94 76 0.33
95 10 0.04
96 72 0.32
97 1 0.00
98 1 0.00
99 32 0.14
100 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (91 bp):
TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCGATATGTAGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCAACCATGAGA
Found at i:63413804 original size:29 final size:29
Alignment explanation
Indices: 63413766--63413861 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
63413756 AATGTGGCTA
*
63413766 CCTAACGGGCCATATAAATGTGATTTGGG
1 CCTAATGGGCCATATAAATGTGATTTGGG
* *
63413795 CCTAATGGGCCATATACAGGTGATTTGGG
1 CCTAATGGGCCATATAAATGTGATTTGGG
* *
63413824 CCTAATGGGCCATATGAATATGA-TTGGG
1 CCTAATGGGCCATATAAATGTGATTTGGG
*
63413852 CTTAATGGGC
1 CCTAATGGGC
63413862 TAGATACAAG
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 14 0.24
29 45 0.76
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (29 bp):
CCTAATGGGCCATATAAATGTGATTTGGG
Found at i:63416579 original size:28 final size:29
Alignment explanation
Indices: 63416497--63416591 Score: 140
Period size: 29 Copynumber: 3.3 Consensus size: 29
63416487 AAAGCAAGAC
63416497 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
63416526 TA-GAAATGTGATTTGGGCCTAATGGGCCA
1 TATG-AATGTGATTTGGGCCTAATGGGCCA
* * *
63416555 TATGAATGAGA-TTGGCCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
63416583 TATGAATGT
1 TATGAATGT
63416592 ATGTAGACTT
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
28 24 0.40
29 35 0.58
30 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:63420934 original size:37 final size:37
Alignment explanation
Indices: 63420884--63420962 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63420874 TTATTACGAA
* * *
63420884 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
63420921 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
63420958 GTCTT
1 GTCTT
63420963 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:63421156 original size:47 final size:47
Alignment explanation
Indices: 63421079--63421298 Score: 406
Period size: 47 Copynumber: 4.7 Consensus size: 47
63421069 GCCCTTCGGG
* *
63421079 ACTTATCACATTCATCACATCGGCCTTTAGGCCCTATCACATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63421127 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63421174 ACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63421220 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63421267 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
63421299 ATACTATCAT
Statistics
Matches: 169, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
46 46 0.27
47 119 0.70
48 4 0.02
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:63421244 original size:93 final size:93
Alignment explanation
Indices: 63421079--63421298 Score: 404
Period size: 93 Copynumber: 2.3 Consensus size: 93
63421069 GCCCTTCGGG
*
63421079 ACTTATCACATTCATCACATCGGCCTTTAGGCCCTATCACATATATACACTTTCACATTCATCAC
1 ACTT-TCACATTCATCACATCGGCCATTAGG-CCTATCACATATATACACTTTCACATTCATCAC
63421144 ATCGGCCATTAGGCCTTATCACATATATAC
64 ATCGGCCATTAGGCCTTATCACATATATAC
*
63421174 ACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACACTTTCACATTCATCACAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCATCACAT
63421239 CGGCCATTAGGCCTTATCACATATATAC
66 CGGCCATTAGGCCTTATCACATATATAC
63421267 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
63421299 ATACTATCAT
Statistics
Matches: 122, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
93 93 0.76
94 25 0.20
95 4 0.03
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (93 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATAC
Found at i:63425003 original size:40 final size:40
Alignment explanation
Indices: 63424699--63425057 Score: 368
Period size: 40 Copynumber: 9.0 Consensus size: 40
63424689 GCCCGAATAC
* * * * *
63424699 ACATCACCAGCATGATTACTCTTCGGGACCTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * ** **
63424739 ATAACACCAGCACGAATGCTCATT-GGGGTTTAGCATGGAT
1 ACATCACTAGCACGAATGCTC-TTCGGGACTTAGCCCGGAT
* *
63424779 ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
63424819 ACATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * *
63424859 ATATCACTGGCATGAATGCTCTTCGGAACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
63424899 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
63424939 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
** * * * *
63424979 TTAGTAACTCGCACCAATGC-CTTC-GGACCTTAGTCCGGAT
1 ACA-TCACTAGCACGAATGCTCTTCGGGA-CTTAGCCCGGAT
** *
63425019 ATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 A-CATCAC-TAGCACGAATGCTCTTCGGGACTTAGCCCGGA
63425058 CATCATTCGA
Statistics
Matches: 270, Mismatches: 42, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
39 5 0.02
40 243 0.90
41 22 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:63425402 original size:29 final size:29
Alignment explanation
Indices: 63425363--63425441 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
63425353 CTTAATAATC
*
63425363 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
63425393 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
63425422 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
63425442 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:63425484 original size:43 final size:43
Alignment explanation
Indices: 63425423--63425525 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
63425413 TGCATTTCAA
63425423 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
63425466 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTCTT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
63425509 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
63425526 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.25, C:0.37, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:63428512 original size:27 final size:27
Alignment explanation
Indices: 63428482--63428659 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
63428472 ATATTGAGCC
* * * *
63428482 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63428509 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63428536 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
63428564 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63428591 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63428618 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63428645 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63428660 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63428621 original size:82 final size:81
Alignment explanation
Indices: 63428503--63428658 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
63428493 TGCTATATAA
* * * *
63428503 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
63428568 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
63428585 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
63428649 CACTTAGTGC
65 CACTTAGTGC
63428659 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.74
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63436610 original size:27 final size:27
Alignment explanation
Indices: 63436580--63436757 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
63436570 ATATTGAGCC
* * * *
63436580 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63436607 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63436634 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
63436662 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63436689 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63436716 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63436743 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63436758 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63436719 original size:82 final size:81
Alignment explanation
Indices: 63436601--63436756 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
63436591 TGCTATATAA
* * * *
63436601 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
63436666 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
63436683 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
63436747 CACTTAGTGC
65 CACTTAGTGC
63436757 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.74
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63438825 original size:37 final size:37
Alignment explanation
Indices: 63438775--63438853 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63438765 TTATTACGAA
* * *
63438775 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
63438812 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
63438849 GTCTT
1 GTCTT
63438854 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:63439083 original size:49 final size:47
Alignment explanation
Indices: 63438971--63439289 Score: 530
Period size: 47 Copynumber: 6.7 Consensus size: 47
63438961 GCCCTTCGGG
63438971 ACTTATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
63439019 ACTTTCACAGTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
63439068 ACTTTCACATTCATCACATCAGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
63439117 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
63439164 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
63439211 ACTTTCACATTCATCACATCGGCAATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63439258 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
63439290 ATACTATCAT
Statistics
Matches: 259, Mismatches: 10, Indels: 5
0.95 0.04 0.02
Matches are distributed among these distances:
47 164 0.63
48 4 0.02
49 91 0.35
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:63439154 original size:22 final size:23
Alignment explanation
Indices: 63439124--63439204 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
63439114 TACACTTTCA
63439124 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
63439147 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
63439171 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
63439194 CATT-ATCACAT
1 CATTCATCACAT
63439205 ATATACACTT
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (23 bp):
CATTCATCACATCGGCCATTAGG
Found at i:63439180 original size:25 final size:24
Alignment explanation
Indices: 63439147--63439229 Score: 71
Period size: 25 Copynumber: 3.5 Consensus size: 24
63439137 GGCCATTAGG
63439147 CATTATCACATATATACACTTTCA
1 CATTATCACATATATACACTTTCA
**** ***
63439171 CATTCATCACAT-CGGCCA-TTAGG
1 CATT-ATCACATATATACACTTTCA
63439194 CATTATCACATATATACACTTTCA
1 CATTATCACATATATACACTTTCA
63439218 CATTCATCACAT
1 CATT-ATCACAT
63439230 CGGCAATTAG
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 7 0.17
23 8 0.20
24 12 0.29
25 14 0.34
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.34
Consensus pattern (24 bp):
CATTATCACATATATACACTTTCA
Found at i:63446269 original size:29 final size:29
Alignment explanation
Indices: 63446227--63446292 Score: 105
Period size: 29 Copynumber: 2.3 Consensus size: 29
63446217 AGACTATGAC
63446227 TGTGATTTGGGCCTAATGGGCCATACGAA
1 TGTGATTTGGGCCTAATGGGCCATACGAA
* *
63446256 TGTGATTTGGGCCTAATGGGCTATATGAA
1 TGTGATTTGGGCCTAATGGGCCATACGAA
*
63446285 TGAGATTT
1 TGTGATTT
63446293 CCTCGTAGGC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.24, C:0.12, G:0.30, T:0.33
Consensus pattern (29 bp):
TGTGATTTGGGCCTAATGGGCCATACGAA
Found at i:63449618 original size:29 final size:27
Alignment explanation
Indices: 63449600--63449669 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
63449590 ATATTAAGTC
63449600 CACACACTCAGTGCTATATAATCAACT
1 CACACACTCAGTGCTATATAATCAACT
* *
63449627 CGCACACTTAGTGCTATATAATCAAACT
1 CACACACTCAGTGCTATATAATC-AACT
* *
63449655 CGCACACTTAGTGCT
1 CACACACTCAGTGCT
63449670 GTACAATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.33, C:0.29, G:0.11, T:0.27
Consensus pattern (27 bp):
CACACACTCAGTGCTATATAATCAACT
Found at i:63449663 original size:28 final size:28
Alignment explanation
Indices: 63449602--63449697 Score: 131
Period size: 28 Copynumber: 3.4 Consensus size: 28
63449592 ATTAAGTCCA
*
63449602 CACACTCAGTGCTATATAATC-AACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
63449629 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
* * * *
63449657 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCTATATAA-TCAAACTCG
63449686 CACACTTAGTGC
1 CACACTTAGTGC
63449698 CAATCTCATG
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 20 0.32
28 23 0.37
29 19 0.31
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCG
Found at i:63459887 original size:40 final size:41
Alignment explanation
Indices: 63459803--63459908 Score: 146
Period size: 40 Copynumber: 2.7 Consensus size: 41
63459793 TACTAGCTAG
* * *
63459803 TAGCCTGCGGGTCTCT-AGCCCAGATAGCATTCCAGCACGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
* *
63459843 -AGCCTGCGGGTCTTTAAGCCTGGATAACATTCCAGCA-TA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
63459882 TAGCCTGCGGGTCTTTAAGCCCGGATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATA
63459909 CAATTCCTCA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
39 15 0.26
40 43 0.74
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (41 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
Found at i:63461612 original size:13 final size:13
Alignment explanation
Indices: 63461594--63461636 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
63461584 TACACATATA
63461594 ATAAACATAGAAT
1 ATAAACATAGAAT
* *
63461607 ATAAACACA-TAT
1 ATAAACATAGAAT
63461619 AATAAACATAGAAT
1 -ATAAACATAGAAT
63461633 ATAA
1 ATAA
63461637 CGGTTAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
12 2 0.08
13 20 0.83
14 2 0.08
ACGTcount: A:0.63, C:0.09, G:0.05, T:0.23
Consensus pattern (13 bp):
ATAAACATAGAAT
Found at i:63461621 original size:26 final size:26
Alignment explanation
Indices: 63461585--63461636 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
63461575 AAATGCATTT
63461585 ACACATATAATAAACATAGAATATAA
1 ACACATATAATAAACATAGAATATAA
63461611 ACACATATAATAAACATAGAATATAA
1 ACACATATAATAAACATAGAATATAA
63461637 CGGTTAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.62, C:0.12, G:0.04, T:0.23
Consensus pattern (26 bp):
ACACATATAATAAACATAGAATATAA
Found at i:63475208 original size:20 final size:18
Alignment explanation
Indices: 63475178--63475220 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
63475168 TTTGTAAAGT
*
63475178 TTGTAAAATAAGTTGTAAA
1 TTGTGAAATAA-TTGTAAA
63475197 TGTGTGAAATAATTG-AAA
1 T-TGTGAAATAATTGTAAA
63475215 TTGTGA
1 TTGTGA
63475221 GTTTCTATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (18 bp):
TTGTGAAATAATTGTAAA
Found at i:63475397 original size:26 final size:26
Alignment explanation
Indices: 63475366--63475417 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
63475356 GAATTAAAGG
63475366 ATGTTTTAATTAATGTAATGATTAAA
1 ATGTTTTAATTAATGTAATGATTAAA
63475392 ATGTTTTAATTAATGTAATGATTAAA
1 ATGTTTTAATTAATGTAATGATTAAA
63475418 TGAGTGAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (26 bp):
ATGTTTTAATTAATGTAATGATTAAA
Found at i:63476050 original size:49 final size:49
Alignment explanation
Indices: 63475899--63476168 Score: 277
Period size: 49 Copynumber: 5.6 Consensus size: 49
63475889 TATGTGTGCT
* * * *
63475899 AGTGTAAGACATGTCTGGGACAT-GCATTGGCCAT-AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATGAGAGCC
* * * * *
63475945 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATGCA-AGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATG-AGAGCC
* * *
63475993 AGTGTAAGACCTGTCTGGGACATGGCATCAACATTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATGAGAGCC
* * * **
63476042 AGTGTAAGACCTGTGTGGGACATGGCATCGGCCTTGATATATGAAAGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATGAGAGCC
*
63476091 AGTGTAAGACCTGTCTGGGACATGGAATCGA-CTTAGATATAT--GAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTT-GATATATGAGAGCC
* *
63476138 AGTGTAAGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACC-TGTCTGGGACATGGCATCG
63476169 GCATCGTACC
Statistics
Matches: 187, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
46 31 0.17
47 14 0.07
48 49 0.26
49 93 0.50
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATGAGAGCC
Found at i:63476102 original size:98 final size:98
Alignment explanation
Indices: 63475936--63476170 Score: 325
Period size: 98 Copynumber: 2.4 Consensus size: 98
63475926 TGGCCATATT
* *
63475936 ATGAGAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATGCAAGCTAGTGTAA
1 ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGATATGAAAGCTAGTGTAA
*
63476000 GACCTGTCTGGGACATGGCATCAACATT-GATAG
66 GACCTGTCTGGGACATGGAATCAAC-TTAGATAG
* * * *
63476033 ATGAGAGCCAGTGTAAGACCTGTGTGGGACATGGCATCGGCCTTGATATATGAAAGTTAGTGTAA
1 ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGATATGAAAGCTAGTGTAA
* *
63476098 GACCTGTCTGGGACATGGAATCGACTTAGATAT
66 GACCTGTCTGGGACATGGAATCAACTTAGATAG
* *
63476131 AT--GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 ATGAGAGCCAGTGTAAGACC-TGTCTGGGACATGGCATCGGC
63476171 ATCGTACCCT
Statistics
Matches: 124, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
96 16 0.13
97 51 0.41
98 57 0.46
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (98 bp):
ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGATATGAAAGCTAGTGTAA
GACCTGTCTGGGACATGGAATCAACTTAGATAG
Found at i:63481810 original size:37 final size:37
Alignment explanation
Indices: 63481760--63481838 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
63481750 TTATTACGAA
* *
63481760 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
63481797 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
63481834 GTCTT
1 GTCTT
63481839 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:63482026 original size:47 final size:47
Alignment explanation
Indices: 63481957--63482163 Score: 387
Period size: 47 Copynumber: 4.4 Consensus size: 47
63481947 CCCTTCGGGA
63481957 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63482004 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63482051 CTTATCACACATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63482098 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63482145 CTTATCACATATATACACT
1 CTTATCACATATATACACT
63482164 GTCTTGGCTG
Statistics
Matches: 156, Mismatches: 4, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
47 156 1.00
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63485584 original size:15 final size:15
Alignment explanation
Indices: 63485564--63485618 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
63485554 GTATCGTAAC
63485564 TTGGATTTCTCTATT
1 TTGGATTTCTCTATT
*
63485579 TTGGATCTCT-TAATT
1 TTGGATTTCTCT-ATT
* *
63485594 CTAGG-TTTCTCCATT
1 -TTGGATTTCTCTATT
63485609 TTGGATTTCT
1 TTGGATTTCT
63485619 TTATCTTGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
14 4 0.13
15 24 0.77
16 3 0.10
ACGTcount: A:0.15, C:0.16, G:0.15, T:0.55
Consensus pattern (15 bp):
TTGGATTTCTCTATT
Found at i:63487151 original size:42 final size:42
Alignment explanation
Indices: 63487102--63487214 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 42
63487092 TTCATTTTCT
** * *
63487102 TGATGCCATAGTTCAACTATGGTTTTACACATCTTCACATAA
1 TGATGCCATAGCCCAACTATGGTCTTACACATATTCACATAA
*
63487144 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
1 TGATGCCATAGCCCAACTATGGTCTTACACATATTCACATAA
* * *
63487185 TCGATGTCATAGCCCAGCTATGGTCATACA
1 T-GATGCCATAGCCCAACTATGGTCTTACA
63487215 TGTAATCACA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
41 2 0.03
42 61 0.97
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
TGATGCCATAGCCCAACTATGGTCTTACACATATTCACATAA
Found at i:63487224 original size:42 final size:42
Alignment explanation
Indices: 63487103--63487372 Score: 148
Period size: 48 Copynumber: 6.0 Consensus size: 42
63487093 TCATTTTCTT
** * ** **
63487103 GATGCCATAGTTCAACTATGGTTTTACACATCTTCACATAAT-
1 GATGCCATAGCCCAGCTATGGTCATACACATAATCACAT-ATC
* *
63487145 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATATC
1 GATGCCATAGCCCAGCTATGGTCATACACATAATCACATATC
* *
63487187 GATGTCATAGCCCAGCTATGGTCATACATGTAATCACATATCACATATC
1 GATGCCATAGCCCAGCTATGGTCATAC-----A-CATA-ATCACATATC
** * *
63487236 GATGCCATAGCCCAGCTATAATCTTACATGAATCAGATATCACATATC
1 GATGCCATAGCCCAGCTATGGTCATAC----A-CATA-ATCACATATC
* * *
63487284 GATGCCATAGTCCAGCTATAGTCTTACACGAATCACATATCACATATC
1 GATGCCATAGCCCAGCTATGGTCATACAC--AT---A-ATCACATATC
* * * *
63487332 GATGCCATAGCCCAACTATGGTCTTACTC-GAATCACATATC
1 GATGCCATAGCCCAGCTATGGTCATACACATAATCACATATC
63487373 TCACTGATGC
Statistics
Matches: 190, Mismatches: 25, Indels: 27
0.79 0.10 0.11
Matches are distributed among these distances:
41 12 0.06
42 60 0.32
43 1 0.01
44 1 0.01
45 1 0.01
47 1 0.01
48 82 0.43
49 32 0.17
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (42 bp):
GATGCCATAGCCCAGCTATGGTCATACACATAATCACATATC
Found at i:63487250 original size:91 final size:93
Alignment explanation
Indices: 63487136--63487372 Score: 292
Period size: 96 Copynumber: 2.6 Consensus size: 93
63487126 TTACACATCT
* *
63487136 TCACATAAT-GATGCCATAGCCCAGCTATGGTCTTAC-A-CATAT-TCACATATCGATGTCATAG
1 TCACAT-ATCGATGCCATAGCCCAGCTATGGTCTTACAATCAGATATCACATATCGATGCCATAG
* *
63487197 CCCAGCTATGGTCATACATGTAATCACATA
65 CCCAGCTATAGTCATACACG-AATCACATA
**
63487227 TCACATATCGATGCCATAGCCCAGCTATAATCTTACATGAATCAGATATCACATATCGATGCCAT
1 TCACATATCGATGCCATAGCCCAGCTATGGTCTTAC---AATCAGATATCACATATCGATGCCAT
* *
63487292 AGTCCAGCTATAGTCTTACACGAATCACATA
63 AGCCCAGCTATAGTCATACACGAATCACATA
*
63487323 TCACATATCGATGCCATAGCCCAACTATGGTCTTAC--TC-GA-ATCACATATC
1 TCACATATCGATGCCATAGCCCAGCTATGGTCTTACAATCAGATATCACATATC
63487373 TCACTGATGC
Statistics
Matches: 128, Mismatches: 11, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
89 10 0.08
90 4 0.03
91 33 0.26
95 1 0.01
96 46 0.36
97 34 0.27
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (93 bp):
TCACATATCGATGCCATAGCCCAGCTATGGTCTTACAATCAGATATCACATATCGATGCCATAGC
CCAGCTATAGTCATACACGAATCACATA
Found at i:63487288 original size:48 final size:48
Alignment explanation
Indices: 63487171--63487372 Score: 289
Period size: 48 Copynumber: 4.2 Consensus size: 48
63487161 TATGGTCTTA
* * *
63487171 CACATATTCACATATCGATGTCATAGCCCAGCTATGGTCATACATGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATAGTCTTACATG-AAT
*
63487221 CACATATCACATATCGATGCCATAGCCCAGCTATAATCTTACATGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATAGTCTTACATGAAT
* * *
63487269 CAGATATCACATATCGATGCCATAGTCCAGCTATAGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATAGTCTTACATGAAT
* *
63487317 CACATATCACATATCGATGCCATAGCCCAACTATGGTCTTAC-TCGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATAGTCTTACAT-GAAT
63487365 CACATATC
1 CACATATC
63487373 TCACTGATGC
Statistics
Matches: 138, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
48 97 0.70
49 35 0.25
50 6 0.04
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATAGTCTTACATGAAT
Found at i:63492958 original size:43 final size:42
Alignment explanation
Indices: 63492911--63493037 Score: 141
Period size: 43 Copynumber: 3.0 Consensus size: 42
63492901 CATCAATTTA
*
63492911 TGATTTACGTGTAAGACCATGTATGGGACATCGGCATCGTATT
1 TGATTTACGTGTAAGACCATGTCTGGGACAT-GGCATCGTATT
* *
63492954 TGATTT-TGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 TGATTTACGTGTAAGACCATGTCTGGGACA-TGGCATCG-TATT
* * * *
63492997 TGA-TTACATGTAAGACCACGTCTAGGACATTGGCATTGTAT
1 TGATTTACGTGTAAGACCATGTCTGGGACA-TGGCATCGTAT
63493038 GAGCTTTCCG
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
42 32 0.45
43 39 0.55
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (42 bp):
TGATTTACGTGTAAGACCATGTCTGGGACATGGCATCGTATT
Found at i:63497431 original size:42 final size:43
Alignment explanation
Indices: 63497350--63497503 Score: 136
Period size: 43 Copynumber: 3.6 Consensus size: 43
63497340 TCCAAAACTT
* * *
63497350 GGTCTTACATGTAATCAAATATCGATGCCACCGTCCCAGATAG
1 GGTCTTACACGAAATCAAATATCGATGCCACCGTCCCAGACAG
* * *
63497393 GGTCTTACACGAAATCAAATA-CGATGCTGA-TGTCCCAGACAT
1 GGTCTTACACGAAATCAAATATCGATGC-CACCGTCCCAGACAG
* * *
63497435 GGTCTTACGCGTAAATCACAA-ATCGATGCCAACGTCCCTGAC-G
1 GGTCTTACACG-AAATCA-AATATCGATGCCACCGTCCCAGACAG
* * *
63497478 TGGTCTTACTCGAAAACACATATCGA
1 -GGTCTTACACGAAATCAAATATCGA
63497504 AATCCTATGT
Statistics
Matches: 90, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
42 26 0.29
43 38 0.42
44 26 0.29
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCACCGTCCCAGACAG
Found at i:63497875 original size:8 final size:8
Alignment explanation
Indices: 63497862--63497894 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
63497852 AAATTAGCCC
63497862 TCACATTT
1 TCACATTT
63497870 TCACATTT
1 TCACATTT
63497878 TCACATTT
1 TCACATTT
63497886 TCACATTT
1 TCACATTT
63497894 T
1 T
63497895 AACACTTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:63508319 original size:13 final size:13
Alignment explanation
Indices: 63508303--63508335 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
63508293 TTTAATTAAA
*
63508303 TTAGTTAATTAGT
1 TTAGATAATTAGT
63508316 TTAGATAATTAGT
1 TTAGATAATTAGT
63508329 TTA-ATAA
1 TTAGATAA
63508336 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:63513735 original size:6 final size:6
Alignment explanation
Indices: 63513717--63513761 Score: 60
Period size: 6 Copynumber: 8.0 Consensus size: 6
63513707 TCCTCCTATC
*
63513717 TTTTTA TTCTTA TTTTTA -TTTTA -TTTTA -TTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
63513762 CTTTCATTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 15 0.42
6 21 0.58
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:63513740 original size:5 final size:5
Alignment explanation
Indices: 63513718--63513790 Score: 60
Period size: 5 Copynumber: 13.8 Consensus size: 5
63513708 CCTCCTATCT
*
63513718 TTTTA TTCTTA TTTTTA TTTTA TTTTA TTTTA TTTTTA TTTTTA CTTTCA
1 TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA -TTTTA
*
63513768 TTTCAA TTTTA --TTA TTTTA TTTT
1 TTT-TA TTTTA TTTTA TTTTA TTTT
63513791 GAAAGACATA
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
3 3 0.05
5 28 0.48
6 25 0.43
7 2 0.03
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:63513740 original size:11 final size:11
Alignment explanation
Indices: 63513717--63513759 Score: 70
Period size: 11 Copynumber: 3.9 Consensus size: 11
63513707 TCCTCCTATC
63513717 TTTTTATTCTTA
1 TTTTTATT-TTA
63513729 TTTTTATTTTA
1 TTTTTATTTTA
63513740 -TTTTATTTTA
1 TTTTTATTTTA
63513750 TTTTTATTTT
1 TTTTTATTTT
63513760 TACTTTCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.33
11 12 0.40
12 8 0.27
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:63516609 original size:13 final size:13
Alignment explanation
Indices: 63516593--63516625 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
63516583 TTTAATTAAA
*
63516593 TTAGTTAATTAGT
1 TTAGATAATTAGT
63516606 TTAGATAATTAGT
1 TTAGATAATTAGT
63516619 TTA-ATAA
1 TTAGATAA
63516626 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:63523248 original size:45 final size:44
Alignment explanation
Indices: 63523164--63523249 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 44
63523154 TATGTAATCT
*
63523164 GAACTCATTGAGTTGTGTCTAAGTTCATGATACATATGACATCC
1 GAACTCATTGAGTTGTGTCAAAGTTCATGATACATATGACATCC
* **
63523208 GAACTCATTGAGTTGTGGTCAAAGTTCGTGATATGTATGACA
1 GAACTCATTGAGTTGT-GTCAAAGTTCATGATACATATGACA
63523250 CATGTTTTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 16 0.43
45 21 0.57
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (44 bp):
GAACTCATTGAGTTGTGTCAAAGTTCATGATACATATGACATCC
Found at i:63525008 original size:173 final size:173
Alignment explanation
Indices: 63524719--63525069 Score: 684
Period size: 173 Copynumber: 2.0 Consensus size: 173
63524709 AAAGTTTACC
*
63524719 TATACATATTTATTTTTTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
1 TATACATATTTATTTATTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
63524784 TATAAATAACATCCATTTTAATTTACAAATGCATTACATGTTATAACACAATACGCATCCATCTA
66 TATAAATAACATCCATTTTAATTTACAAATGCATTACATGTTATAACACAATACGCATCCATCTA
63524849 TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
131 TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
63524892 TATACATATTTATTTATTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
1 TATACATATTTATTTATTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
*
63524957 TATAAATAACATCCATTTTAATTTACTAATGCATTACATGTTATAACACAATACGCATCCATCTA
66 TATAAATAACATCCATTTTAATTTACAAATGCATTACATGTTATAACACAATACGCATCCATCTA
63525022 TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
131 TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
63525065 TATAC
1 TATAC
63525070 CTAAAGATGA
Statistics
Matches: 176, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
173 176 1.00
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.36
Consensus pattern (173 bp):
TATACATATTTATTTATTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
TATAAATAACATCCATTTTAATTTACAAATGCATTACATGTTATAACACAATACGCATCCATCTA
TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
Found at i:63530396 original size:53 final size:53
Alignment explanation
Indices: 63530264--63530513 Score: 242
Period size: 55 Copynumber: 4.7 Consensus size: 53
63530254 ACACGGATAC
* ** * *
63530264 CTTACCATTGCCATGAATTGTCATGGTCTTACATGGTA---T-CCTTTTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAAA
* *
63530313 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATGAAA
* * * *
63530366 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTAT-GAAA
* * * *
63530421 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATGAAA
* * *
63530474 CCTTACCAATTGCCATGCCTAGGCATGGTCTTACACGGTA
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA
63530514 TCCTGAAACC
Statistics
Matches: 166, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
49 35 0.21
52 2 0.01
53 48 0.29
54 15 0.09
55 64 0.39
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAAA
Found at i:63530455 original size:108 final size:110
Alignment explanation
Indices: 63530311--63530508 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
63530301 ATCCTTTTGA
* *
63530311 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
*
63530374 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTAGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
63530419 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
63530484 TGCCATGCCTAGGCATGGTCTTACA
66 TGCCATGCCTAGGCATGGTCTTACA
63530509 CGGTATCCTG
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.60
109 7 0.09
110 24 0.30
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTAGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:63539228 original size:25 final size:25
Alignment explanation
Indices: 63539190--63539242 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
63539180 CCAGTGTAAG
*
63539190 ACCATGTCTAGGACATGGCATTGGC
1 ACCATGTCTAGGACATGGCATCGGC
*
63539215 ACCATGTCTGGGACATGGCATCGGC
1 ACCATGTCTAGGACATGGCATCGGC
63539240 ACC
1 ACC
63539243 TTACCCATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (25 bp):
ACCATGTCTAGGACATGGCATCGGC
Found at i:63545184 original size:42 final size:43
Alignment explanation
Indices: 63545125--63545248 Score: 141
Period size: 42 Copynumber: 2.9 Consensus size: 43
63545115 ATGTTATCAA
*
63545125 ATAT-CGATGCCACTGTCCCAGACAAGGTCTTACACGA-AATC
1 ATATACGATGCCAATGTCCCAGACAAGGTCTTACACGATAATC
63545166 ATATACGATGCCAATGTCCCAGACATA-GTCTTACAC-ATAATC
1 ATATACGATGCCAATGTCCCAGACA-AGGTCTTACACGATAATC
* * * *
63545208 -TCAAATCGATTCCAATGCCCCAGACATGGTCTTACACGATA
1 AT-ATA-CGATGCCAATGTCCCAGACAAGGTCTTACACGATA
63545249 TTACATCTCG
Statistics
Matches: 71, Mismatches: 5, Indels: 11
0.82 0.06 0.13
Matches are distributed among these distances:
41 6 0.08
42 34 0.48
43 28 0.39
44 3 0.04
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (43 bp):
ATATACGATGCCAATGTCCCAGACAAGGTCTTACACGATAATC
Found at i:63552013 original size:93 final size:93
Alignment explanation
Indices: 63551854--63552025 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
63551844 CGCCCATAAG
* * *
63551854 CGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGAATCCATAGGTGAAGTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGAATCCATAAGTGAACTCGGACTCAACTCA
*
63551919 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
* *
63551947 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGAATCCATAAGTGAACTCGGACTCAACTC
63552011 AACGAGCTCGGATGC
65 AACGAGCTCGGATGC
63552026 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGAATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:63552015 original size:46 final size:46
Alignment explanation
Indices: 63551847--63552022 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
63551837 TGTAACCCGC
* *
63551847 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGAAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
* * * * *
63551893 CCATAGGTGAAGTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
63551943 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
63551986 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
63552023 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 58 0.56
47 28 0.27
48 1 0.01
49 1 0.01
50 2 0.02
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:63552041 original size:46 final size:44
Alignment explanation
Indices: 63551855--63552041 Score: 105
Period size: 46 Copynumber: 4.0 Consensus size: 44
63551845 GCCCATAAGC
* * *
63551855 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGA-ATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGCTC-GGATGCTCAACAT-C-TA-GT
* * * *
63551901 GAAGTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACATTTCA-C
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACATCT-AGT
* * * * *
63551948 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGCTCA-ACATCTAGT
63551994 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAA-CAT-CTAGT
63552040 GA
1 GA
63552042 CATGTCACTT
Statistics
Matches: 110, Mismatches: 17, Indels: 28
0.71 0.11 0.18
Matches are distributed among these distances:
44 8 0.07
45 4 0.04
46 57 0.52
47 31 0.28
48 1 0.01
49 6 0.05
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACATCTAGT
Found at i:63555548 original size:33 final size:34
Alignment explanation
Indices: 63555511--63555574 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
63555501 AAGGAAAGAA
63555511 TGAGGT-AAAA-ACAAGAGAGAAAAACAAAGAGTG
1 TGAGGTAAAAACACAAGAG-GAAAAACAAAGAGTG
*
63555544 TGAGGTAAAAACACAAGAGGAAAAAGAAAGA
1 TGAGGTAAAAACACAAGAGGAAAAACAAAGA
63555575 AAATGAGAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 6 0.21
34 15 0.54
35 7 0.25
ACGTcount: A:0.59, C:0.06, G:0.27, T:0.08
Consensus pattern (34 bp):
TGAGGTAAAAACACAAGAGGAAAAACAAAGAGTG
Found at i:63566313 original size:43 final size:42
Alignment explanation
Indices: 63566225--63566344 Score: 125
Period size: 43 Copynumber: 2.8 Consensus size: 42
63566215 ACATATCGAC
* * * * *
63566225 GCCACTGTCCCAGACAGGGTCTTACACGAAATCGATTAATGAT
1 GCCAATGTCCCAGACATGGTCTTACACGTAATC-ATAAATAAT
63566268 GCCAATGTCCCAGACATGGTCTTACACGTAATC-TAAATACAAT
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCATAAAT--AAT
* * * *
63566311 GCCAAAGTCCCAAACATAGTCTTACATGTAATCA
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCA
63566345 CATCTTGGTA
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
41 4 0.06
43 61 0.94
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (42 bp):
GCCAATGTCCCAGACATGGTCTTACACGTAATCATAAATAAT
Found at i:63570478 original size:46 final size:46
Alignment explanation
Indices: 63570407--63570674 Score: 185
Period size: 46 Copynumber: 5.8 Consensus size: 46
63570397 TGTAACCCGC
*
63570407 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCAT
* * * *
63570453 CCATAAGTGAACTCAGACTCCACTCAATGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAGGCATTCGC-A--T
* * * *
63570499 ACATCTCA-CGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCA--TAAGCGAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCAT
* * * *
63570546 CCATAAGTGAACTC-GAACTCAACTCAACAAGCTC-GG-ATACCCAGTT
1 CCATAAGCGAACTCAG-ACTCAACTCAACGAGCTCAGGCATTCGCA--T
* * * * *
63570592 ACATCTCA-CGAACTC-GAACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCA--TAAGCGAACTCAG-ACTCAACTCAACGAGCTCAGGCATTCGCAT
* * *
63570639 CTATAAGTGAACTCAGACTCAACTCAACGAGTTCAG
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAG
63570675 ATGCCCAAAT
Statistics
Matches: 170, Mismatches: 34, Indels: 36
0.71 0.14 0.15
Matches are distributed among these distances:
43 1 0.01
44 9 0.05
45 8 0.05
46 84 0.49
47 53 0.31
48 6 0.04
49 8 0.05
50 1 0.01
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCAT
Found at i:63570522 original size:93 final size:92
Alignment explanation
Indices: 63570414--63570681 Score: 394
Period size: 93 Copynumber: 2.9 Consensus size: 92
63570404 CGCCCATAAG
* * *
63570414 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCCACTCA
1 CGAACTC-GACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
* *
63570479 ATGAGCTCGGATGCCTAGTTACATCTCA
65 ACGAGCTCGGATGCCCAGTTACATCTCA
63570507 CGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTC-GAACTCAACTC
1 CGAACTC-GACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCAG-ACTCAACTC
* *
63570571 AACAAGCTCGGATACCCAGTTACATCTCA
64 AACGAGCTCGGATGCCCAGTTACATCTCA
* *
63570600 CGAACTCGAACTCAACTCAACGAGTTCAGACGTTCGCATCTATAAGTGAACTCAGACTCAACTCA
1 CGAACTCG-ACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
* *
63570665 ACGAGTTCAGATGCCCA
65 ACGAGCTCGGATGCCCA
63570682 AATATCTGAA
Statistics
Matches: 158, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
92 2 0.01
93 155 0.98
94 1 0.01
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (92 bp):
CGAACTCGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCCAGTTACATCTCA
Found at i:63573401 original size:43 final size:43
Alignment explanation
Indices: 63573235--63573402 Score: 139
Period size: 43 Copynumber: 3.9 Consensus size: 43
63573225 ACATAAGCTC
* * *
63573235 ATACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-
1 ATACAATGCCAATATCCCAGACATGGTCTTACATGTAATCTCA
* * **
63573276 ATATCGATGCCACTATCCCAGACA-GTGTCTTACA-CAAAT-TCGA
1 ATA-CAATGCCAATATCCCAGACATG-GTCTTACATGTAATCTC-A
* * * * * *
63573319 GTAACGATGCCAATGTCTCAGACATGGTCCTACACGTAATCTCA
1 AT-ACAATGCCAATATCCCAGACATGGTCTTACATGTAATCTCA
*
63573363 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 ATACAATGCCAATATCCCAGACATGGTCTTACATGTAATC
63573403 ACATCTCAAT
Statistics
Matches: 99, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
41 4 0.04
42 9 0.09
43 77 0.78
44 7 0.07
45 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
ATACAATGCCAATATCCCAGACATGGTCTTACATGTAATCTCA
Found at i:63578622 original size:64 final size:64
Alignment explanation
Indices: 63578542--63578726 Score: 178
Period size: 67 Copynumber: 2.9 Consensus size: 64
63578532 ATACATTATG
* *
63578542 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCCACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATAA
* * * * * * *
63578606 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCCACGAGAT
63578671 AA
63 AA
* * * * *
63578673 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATG-CGTACAAGAGAGCC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCC
63578727 GAACTATATG
Statistics
Matches: 96, Mismatches: 20, Indels: 11
0.76 0.16 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.17
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATAA
Found at i:63587110 original size:73 final size:73
Alignment explanation
Indices: 63586986--63587127 Score: 230
Period size: 73 Copynumber: 1.9 Consensus size: 73
63586976 TGCTCTTGAG
* * * *
63586986 GTTCTTTGGTGCTTGGAGGCCGAATGTTGTTAGGGTTCCTTTTGGGCATCTTTCTGTTTTGCCTA
1 GTTCTTTGCTGCTTGGAGGCCGAATGTTGTTAGGGTTCCTTTTGGGCATCTTTCTATTTTACCAA
63587051 TTTCGACT
66 TTTCGACT
* *
63587059 GTTCTTTGCTGCTTGGAGGCCGAATGTTGTTGGGGTTCCTTTTGGGTATCTTTCTATTTTACCAA
1 GTTCTTTGCTGCTTGGAGGCCGAATGTTGTTAGGGTTCCTTTTGGGCATCTTTCTATTTTACCAA
63587124 TTTC
66 TTTC
63587128 AACTTTGGCA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 63 1.00
ACGTcount: A:0.11, C:0.18, G:0.26, T:0.46
Consensus pattern (73 bp):
GTTCTTTGCTGCTTGGAGGCCGAATGTTGTTAGGGTTCCTTTTGGGCATCTTTCTATTTTACCAA
TTTCGACT
Found at i:63588508 original size:27 final size:27
Alignment explanation
Indices: 63588477--63588534 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
63588467 ACCCTCTAAT
63588477 TGATAAAATAACTATTATGCCCCTATG
1 TGATAAAATAACTATTATGCCCCTATG
*
63588504 TGATAAAATGACTATTATGCCCCTATG
1 TGATAAAATAACTATTATGCCCCTATG
63588531 TGAT
1 TGAT
63588535 GTATGACTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (27 bp):
TGATAAAATAACTATTATGCCCCTATG
Found at i:63589779 original size:27 final size:27
Alignment explanation
Indices: 63589731--63589889 Score: 155
Period size: 27 Copynumber: 5.9 Consensus size: 27
63589721 GCGAGGCTGC
* * *
63589731 CAGATATTGTGACGGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
63589758 TAGATATTGTGGCAGAACCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
63589784 CAGATATACGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
63589811 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
63589838 CATATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
63589865 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
63589890 GACGCTTCCT
Statistics
Matches: 107, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
26 9 0.08
27 94 0.88
28 4 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:63589890 original size:54 final size:54
Alignment explanation
Indices: 63589749--63589892 Score: 209
Period size: 54 Copynumber: 2.7 Consensus size: 54
63589739 GTGACGGAGT
* * * * *
63589749 CACCAGATATAGAT-ATTGTGGCAGAACCACCAGAACAGATATACGTGGTAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATACGTGGCAGAGC
* *
63589803 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACATATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATACGTGGCAGAGC
63589857 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
63589893 GCTTCCTCCA
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 4 0.05
54 78 0.95
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATACGTGGCAGAGC
Found at i:63591532 original size:26 final size:26
Alignment explanation
Indices: 63591501--63591608 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
63591491 TGAAATGCCC
* *
63591501 ATCATGGAACATTTACTTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
63591527 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
63591553 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
63591579 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
63591605 ATCA
1 ATCA
63591609 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:63594931 original size:46 final size:45
Alignment explanation
Indices: 63594822--63594959 Score: 187
Period size: 46 Copynumber: 3.1 Consensus size: 45
63594812 TGGCTCTCAC
63594822 ACATC-CGT-GCCGATGCATGTCCCAGACATGTCTTACACTAGC-
1 ACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
* *
63594864 ACATCTCGTAGCCGATGCATGTCCCA-AGCATGTATTACACTGGCTT
1 ACATCTCGTAGCCGATGCATGTCCCAGA-CATGTCTTACACTAGC-T
63594910 ACATCTCG-AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
1 ACATCTCGTA-GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
63594955 CACAT
1 -ACAT
63594960 AACAGCAATG
Statistics
Matches: 84, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
42 5 0.06
43 4 0.05
44 30 0.36
45 2 0.02
46 42 0.50
47 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (45 bp):
ACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
Found at i:63599552 original size:28 final size:28
Alignment explanation
Indices: 63599488--63599641 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
63599478 ATATTAAGTC
* *
63599488 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
63599515 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
63599543 CGCACGCTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
* * *
63599571 CGCACACTTATTGCTACATAGTCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
63599599 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
63599627 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63599642 GTACAATTTA
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
27 22 0.19
28 94 0.81
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:63599664 original size:29 final size:28
Alignment explanation
Indices: 63599487--63599666 Score: 193
Period size: 28 Copynumber: 6.4 Consensus size: 28
63599477 TATATTAAGT
* *
63599487 CCGCACACTCAGTGCTATATAATC-AAC
1 CCGCACACTTAGTGCTACATAATCAAAC
* *
63599514 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTACATAATCAAAC
* * *
63599542 TCGCACGCTTAGTGCTACATAATCAAGC
1 CCGCACACTTAGTGCTACATAATCAAAC
* * * *
63599570 TCGCACACTTATTGCTACATAGTCAAGC
1 CCGCACACTTAGTGCTACATAATCAAAC
*
63599598 TCGCACACTTAGTGCTACATAATCAAAC
1 CCGCACACTTAGTGCTACATAATCAAAC
* * *
63599626 TCGCACACTTAGTGCTGTACA-ATTTAAAC
1 CCGCACACTTAGTGC--TACATAATCAAAC
63599655 CCGCACACTTAG
1 CCGCACACTTAG
63599667 CGCCAATCTC
Statistics
Matches: 136, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
27 22 0.16
28 93 0.68
29 17 0.12
30 4 0.03
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CCGCACACTTAGTGCTACATAATCAAAC
Found at i:63600134 original size:14 final size:14
Alignment explanation
Indices: 63600115--63600144 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63600105 TGGGCATACT
*
63600115 TATGTATATGTATA
1 TATGTATATATATA
63600129 TATGTATATATATA
1 TATGTATATATATA
63600143 TA
1 TA
63600145 CTTCGGAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:63607913 original size:28 final size:27
Alignment explanation
Indices: 63607850--63608000 Score: 250
Period size: 27 Copynumber: 5.6 Consensus size: 27
63607840 ATATTAAGTC
* *
63607850 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
63607877 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
63607905 CGCACACTTAGTGCTACATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
63607932 CGCACACTTAGTGCTACAT-ATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
63607958 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
63607986 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63608001 GTACAATTTA
Statistics
Matches: 119, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
26 26 0.22
27 48 0.40
28 45 0.38
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63620609 original size:130 final size:130
Alignment explanation
Indices: 63620376--63620636 Score: 425
Period size: 130 Copynumber: 2.0 Consensus size: 130
63620366 AATAAGGCGA
* * *
63620376 AGCTTAAGATACATAGAGAACGAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTGA
1 AGCTTAAGATACACAGAGAACAAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
* * *
63620441 AAACCAAGGCAATTAGCTACCTCCTATAATTGCGGCTAATCAAAATCCTGCTCCACATACGATGT
66 AAACCAAGGCAATCAGCTACCTCCTACAATTGCGGCTAATCAAAATCCTACTCCACATACGATGT
63620506 AGCTTAAGATACACAGAGAACAAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
1 AGCTTAAGATACACAGAGAACAAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
* * *
63620571 AAACCAAGGCAATCAGCTACCT-CTCGCAATTGCGGCTAATCAAAATCCTACTCCACGTACTATG
66 AAACCAAGGCAATCAGCTACCTCCT-ACAATTGCGGCTAATCAAAATCCTACTCCACATACGATG
63620635 T
130 T
63620636 A
1 A
63620637 TGATTAAGCT
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
129 2 0.02
130 119 0.98
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.18
Consensus pattern (130 bp):
AGCTTAAGATACACAGAGAACAAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
AAACCAAGGCAATCAGCTACCTCCTACAATTGCGGCTAATCAAAATCCTACTCCACATACGATGT
Found at i:63631237 original size:6 final size:6
Alignment explanation
Indices: 63631206--63631294 Score: 101
Period size: 6 Copynumber: 14.8 Consensus size: 6
63631196 CCGGCGATGA
* *
63631206 TTATGT TTAATT TTATTT TGTA--T TTATTT TTATTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT T-TATTT TTATTT TTATTT TTATTT TTATTT
* * *
63631253 TTATTT TTATTG TCATTT TTATTT TTATTT TATGTTT TTATT
1 TTATTT TTATTT TTATTT TTATTT TTATTT T-TATTT TTATT
63631295 AATTTCACCC
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
4 2 0.03
5 2 0.03
6 59 0.84
7 7 0.10
ACGTcount: A:0.18, C:0.01, G:0.04, T:0.76
Consensus pattern (6 bp):
TTATTT
Found at i:63634227 original size:40 final size:40
Alignment explanation
Indices: 63634160--63634336 Score: 268
Period size: 40 Copynumber: 4.5 Consensus size: 40
63634150 ACCCAAGTAT
* *
63634160 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACCAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
63634199 CTTCAGGTCCTAGCCCGGATACAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
63634239 CTTTGGGTCTTAGCCCGGATATAGCAACTCGCACCAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
63634279 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
63634319 CTTCGGGTCTTAGCCCGG
1 CTTCGGGTCTTAGCCCGG
63634337 TTATCATCCG
Statistics
Matches: 124, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 9 0.07
40 114 0.92
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:63640271 original size:30 final size:30
Alignment explanation
Indices: 63640235--63640292 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
63640225 TGACGTCTCA
63640235 AACAAATGAACAGATATCATAATTTACACT
1 AACAAATGAACAGATATCATAATTTACACT
* * * *
63640265 AACAAATGACCGGATTTCATATTTTACA
1 AACAAATGAACAGATATCATAATTTACA
63640293 ATCTATTTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.45, C:0.17, G:0.09, T:0.29
Consensus pattern (30 bp):
AACAAATGAACAGATATCATAATTTACACT
Found at i:63643131 original size:46 final size:47
Alignment explanation
Indices: 63643025--63643146 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
63643015 TGTCTTCGAC
** * *
63643025 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCAAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCAAAT
* *
63643075 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCAAAT
*
63643121 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
63643147 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCAAAT
Found at i:63643152 original size:5 final size:5
Alignment explanation
Indices: 63643142--63643176 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
63643132 TGGCTCATTT
63643142 CTGTC CTGTC CTGTC CTGTC CTGTC CTGTC CTGTC
1 CTGTC CTGTC CTGTC CTGTC CTGTC CTGTC CTGTC
63643177 AACCACAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
CTGTC
Found at i:63643692 original size:18 final size:18
Alignment explanation
Indices: 63643669--63643706 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
63643659 TATGACTATT
63643669 AGGTATTTTTACCGATTA
1 AGGTATTTTTACCGATTA
*
63643687 AGGTATTTTTATCGATTA
1 AGGTATTTTTACCGATTA
63643705 AG
1 AG
63643707 CCCTTTTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (18 bp):
AGGTATTTTTACCGATTA
Found at i:63657520 original size:43 final size:43
Alignment explanation
Indices: 63657406--63657564 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
63657396 GATTAACGAG
* * *
63657406 ATGTGATTATGCGTAAGACCATGTTTGGGACATTGGAATCATT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGAATCATT
*
63657449 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGAATCATT
* * * * *
63657492 ATTTGATTTCGTGTAAGACCATAG-CTGGG-CTATCGGCACCGA-T
1 ATGTGATTACGTGTAAGACCAT-GTCTGGGAC-ATTGGAATC-ATT
* * *
63657535 ATGTGATAACATGTAAGACCATATCTGGGA
1 ATGTGATTACGTGTAAGACCATGTCTGGGA
63657565 TATGACATTG
Statistics
Matches: 98, Mismatches: 13, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
42 1 0.01
43 95 0.97
44 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGAATCATT
Found at i:63669025 original size:30 final size:30
Alignment explanation
Indices: 63668991--63669052 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
63668981 TCCTTAACTC
63668991 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
63669021 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
63669051 AA
1 AA
63669053 GCTCGGGAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:63674664 original size:26 final size:26
Alignment explanation
Indices: 63674628--63674679 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
63674618 CTTTCAAAAG
63674628 TAAAAGATTTCGATGTACAGTTACAC
1 TAAAAGATTTCGATGTACAGTTACAC
63674654 TAAAAGATTTCGATGTACAGTTACAC
1 TAAAAGATTTCGATGTACAGTTACAC
63674680 ATCTTTTCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (26 bp):
TAAAAGATTTCGATGTACAGTTACAC
Found at i:63681343 original size:28 final size:28
Alignment explanation
Indices: 63681303--63681359 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
63681293 ACTTTTATGC
63681303 ATAGTTTTCTAACCGTTCCCATGCTCAA
1 ATAGTTTTCTAACCGTTCCCATGCTCAA
63681331 ATAGTTTTCTAACCGTTCCCATGCTCAA
1 ATAGTTTTCTAACCGTTCCCATGCTCAA
63681359 A
1 A
63681360 GCCCAATTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (28 bp):
ATAGTTTTCTAACCGTTCCCATGCTCAA
Found at i:63684233 original size:28 final size:29
Alignment explanation
Indices: 63684174--63684238 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
63684164 TTCATATTTA
63684174 TTTTA-CAATTTAACCCCTTAAATTGCAC
1 TTTTATCAATTTAACCCCTTAAATTGCAC
* * *
63684202 TTTTCTCAATTTAA-TCCTT-AATTGACAT
1 TTTTATCAATTTAACCCCTTAAATTG-CAC
63684230 TTTTATCAA
1 TTTTATCAA
63684239 AAATCACTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
27 5 0.16
28 18 0.58
29 8 0.26
ACGTcount: A:0.31, C:0.20, G:0.03, T:0.46
Consensus pattern (29 bp):
TTTTATCAATTTAACCCCTTAAATTGCAC
Found at i:63686338 original size:11 final size:11
Alignment explanation
Indices: 63686322--63686346 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63686312 ATATGATATT
63686322 TTATTATTTTA
1 TTATTATTTTA
63686333 TTATTATTTTA
1 TTATTATTTTA
63686344 TTA
1 TTA
63686347 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:63689256 original size:47 final size:47
Alignment explanation
Indices: 63689143--63689311 Score: 191
Period size: 47 Copynumber: 3.6 Consensus size: 47
63689133 ATATTTGAAT
* * *
63689143 TCCGAAC-CAGTTGAGTTGAGTCCGAGTTTGTGAGATAT-ATCAGCCA
1 TCCGAACTCA-TTGAGTTGAGTCCGAGTTCGTGAGATATAATCTGACA
* * * *
63689189 TCCAAACTCGTTGATTTGAGTCCAAGTTCGTGAGATATAATCTGACA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCGTGAGATATAATCTGACA
** * *
63689236 TCCGAACTCATTGAGTTGAGTTTGAGTTCGTGAGATGTAA-CTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCGTGAGATATAATCT-GACA
*
63689283 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC
63689312 ACTTATGGTT
Statistics
Matches: 102, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
46 33 0.32
47 69 0.68
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (47 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCGTGAGATATAATCTGACA
Found at i:63698004 original size:22 final size:23
Alignment explanation
Indices: 63697958--63698005 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
63697948 TCACATGGCT
*
63697958 AAATTCATAACTCAAAATATACA
1 AAATTCAAAACTCAAAATATACA
63697981 AAATTCAAAAC-CAAACATAT-CA
1 AAATTCAAAACTCAAA-ATATACA
63698003 AAA
1 AAA
63698006 CTAGCATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.60, C:0.19, G:0.00, T:0.21
Consensus pattern (23 bp):
AAATTCAAAACTCAAAATATACA
Found at i:63702093 original size:13 final size:13
Alignment explanation
Indices: 63702077--63702101 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63702067 AAAATTCCCC
63702077 TCCAAAATCCTTG
1 TCCAAAATCCTTG
63702090 TCCAAAATCCTT
1 TCCAAAATCCTT
63702102 ATTTTCTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.32, G:0.04, T:0.32
Consensus pattern (13 bp):
TCCAAAATCCTTG
Found at i:63710077 original size:22 final size:23
Alignment explanation
Indices: 63710051--63710098 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
63710041 TATAGGCTAG
*
63710051 TTTTGATATG-TTTG-GTTTTGAA
1 TTTTG-TATGTTTTGAGTTATGAA
63710073 TTTTGTATGTTTTGAGTTATGAA
1 TTTTGTATGTTTTGAGTTATGAA
63710096 TTT
1 TTT
63710099 AGCCATGTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 9 0.39
23 10 0.43
ACGTcount: A:0.19, C:0.00, G:0.21, T:0.60
Consensus pattern (23 bp):
TTTTGTATGTTTTGAGTTATGAA
Found at i:63711528 original size:43 final size:43
Alignment explanation
Indices: 63711435--63711601 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 43
63711425 GGTCACTAAG
* * * * * ** *
63711435 ATGTAATTACACGTACGACCATGTTTGGGACATCGGGGTTG-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
63711477 ATTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATC-ATT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGA-T
*** *
63711521 AAT-TGATTTTGTGTAAGACCCTGTCTGGGACATTGGCATCGAT
1 -ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * * *
63711564 ATGTGATAACATATAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
63711602 TGTACGAGCT
Statistics
Matches: 99, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
42 9 0.09
43 86 0.87
44 3 0.03
45 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
Found at i:63712679 original size:31 final size:31
Alignment explanation
Indices: 63712641--63712734 Score: 188
Period size: 31 Copynumber: 3.0 Consensus size: 31
63712631 TAAAATACTA
63712641 CGTCGAGTGGCCACCTCCGAGTTCTCCGTCG
1 CGTCGAGTGGCCACCTCCGAGTTCTCCGTCG
63712672 CGTCGAGTGGCCACCTCCGAGTTCTCCGTCG
1 CGTCGAGTGGCCACCTCCGAGTTCTCCGTCG
63712703 CGTCGAGTGGCCACCTCCGAGTTCTCCGTCG
1 CGTCGAGTGGCCACCTCCGAGTTCTCCGTCG
63712734 C
1 C
63712735 CTCAATCCAT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.10, C:0.39, G:0.29, T:0.22
Consensus pattern (31 bp):
CGTCGAGTGGCCACCTCCGAGTTCTCCGTCG
Found at i:63720528 original size:34 final size:34
Alignment explanation
Indices: 63720485--63720564 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
63720475 TTAGCCCTTT
63720485 TTTCAGTAACAGTCG-CAGTCAGGGCCTAAGCCCA
1 TTTCAGTAACAGT-GACAGTCAGGGCCTAAGCCCA
** * *
63720519 TTTCAGTAACAGTGACAGTCTTGGCCTGAGCCCT
1 TTTCAGTAACAGTGACAGTCAGGGCCTAAGCCCA
63720553 TTTCAGT-ACAGT
1 TTTCAGTAACAGT
63720565 ATGCAAACAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
33 6 0.15
34 35 0.85
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (34 bp):
TTTCAGTAACAGTGACAGTCAGGGCCTAAGCCCA
Found at i:63724282 original size:40 final size:40
Alignment explanation
Indices: 63724238--63724422 Score: 264
Period size: 40 Copynumber: 4.7 Consensus size: 40
63724228 GCCACTAGCT
* * **
63724238 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
63724278 CAAATGCCTTCGGGACTTAGCCC-GATATAATAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
* * *
63724317 CAAATGCCTTCGAGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
* * *
63724357 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
*
63724397 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63724423 ATTAGCCACT
Statistics
Matches: 131, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 34 0.26
40 97 0.74
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
Found at i:63724336 original size:79 final size:80
Alignment explanation
Indices: 63724238--63724422 Score: 282
Period size: 79 Copynumber: 2.3 Consensus size: 80
63724228 GCCACTAGCT
* * * *
63724238 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCC-G
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
63724302 ATATAATAACTCACA
66 ATATAATAACTCACA
* *
63724317 CAAATGCCTTCGAGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
63724382 ATATAGTAGCTCACA
66 ATATAATAACTCACA
*
63724397 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63724423 ATTAGCCACT
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 57 0.60
80 38 0.40
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCACA
Found at i:63724443 original size:40 final size:41
Alignment explanation
Indices: 63724215--63724457 Score: 208
Period size: 40 Copynumber: 6.1 Consensus size: 41
63724205 CCTTCGGAGT
*
63724215 TTAG-CCGG-ATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGAATATAGCCACTAGCACAAATGCCTTCGGGAC
* ** *
63724254 TTAGCCCGG-TTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGAATATAGCCACTAGCACAAATGCCTTCGGGAC
*** *
63724294 TTAGCCC-G-ATATAATAACTCA-CACAAATGCCTTCGAGAC
1 TTAGCCCGGAATATAGCCACT-AGCACAAATGCCTTCGGGAC
* *
63724333 TTAGCCCGGATATAATAG---CTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGGA-AT-ATAGCCACTAGCACAAATGCCTTCGGGAC
* *
63724373 TTAGCCCGG-ATATAG-TAGCTCA-CACGAATGCCTTCGGGAC
1 TTAGCCCGGAATATAGCCA-CT-AGCACAAATGCCTTCGGGAC
*
63724413 TTAGCCCGGAAT-TAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGAATATAGCCACTAGCACAAATGCCT-TCGGGAC
63724453 TTAGC
1 TTAGC
63724458 TAGGTTATCA
Statistics
Matches: 170, Mismatches: 19, Indels: 29
0.78 0.09 0.13
Matches are distributed among these distances:
37 4 0.02
38 2 0.01
39 41 0.24
40 115 0.68
41 3 0.02
42 2 0.01
43 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
TTAGCCCGGAATATAGCCACTAGCACAAATGCCTTCGGGAC
Done.