Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 192 of 343
Found at i:63724450 original size:80 final size:78
Alignment explanation
Indices: 63724238--63724457 Score: 259
Period size: 80 Copynumber: 2.8 Consensus size: 78
63724228 GCCACTAGCT
* *
63724238 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAG--ACTAGCACAAATGCCTTCGGGACTTAGCCCG
63724302 ATATAATAACTCACA
64 ATATAATAACTCACA
* * *
63724317 CAAATGCCTTCGAGACTTAGCCCGGATATAATAG-CTCGCACAAACGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGA-AT-ATAGACTAGCACAAATGCCTTCGGGACTTAGCCC-
* *
63724381 GATATAGTAGCTCACA
63 GATATAATAACTCACA
* *
63724397 CGAATGCCTTCGGGACTTAGCCCGGAAT-TAGCCACTAGCTCAAATG-CTCTCGGGACTTAGC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAG--ACTAGCACAAATGCCT-TCGGGACTTAGC
63724458 TAGGTTATCA
Statistics
Matches: 122, Mismatches: 11, Indels: 15
0.82 0.07 0.10
Matches are distributed among these distances:
77 3 0.02
79 55 0.45
80 59 0.48
81 1 0.01
82 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGACTAGCACAAATGCCTTCGGGACTTAGCCCGAT
ATAATAACTCACA
Found at i:63737165 original size:24 final size:24
Alignment explanation
Indices: 63737038--63737195 Score: 115
Period size: 24 Copynumber: 6.6 Consensus size: 24
63737028 ACCGATTTCA
* * *
63737038 CACACATAGTGCTAAAT-AAATTCG
1 CACACATAGTGC-CATTCAAATCCG
* *
63737062 CACACATAGTGCCATGCTACA-CCG
1 CACACATAGTGCCATTC-AAATCCG
* * *
63737086 CACACATAGTGCC-TTGAAGATTCA
1 CACACATAGTGCCATTCAA-ATCCG
* ** * * * *
63737110 CTCATGTATTGACATCCAAATCAG
1 CACACATAGTGCCATTCAAATCCG
*
63737134 CACACATAGTGCCATTCAATTCCG
1 CACACATAGTGCCATTCAAATCCG
63737158 CACACATAGTGCCATTCAAATCCG
1 CACACATAGTGCCATTCAAATCCG
*
63737182 CACACTTAGTGCCA
1 CACACATAGTGCCA
63737196 ATGTTGACCC
Statistics
Matches: 99, Mismatches: 30, Indels: 10
0.71 0.22 0.07
Matches are distributed among these distances:
22 1 0.01
23 3 0.03
24 90 0.91
25 5 0.05
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (24 bp):
CACACATAGTGCCATTCAAATCCG
Found at i:63746494 original size:43 final size:43
Alignment explanation
Indices: 63746425--63746545 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 43
63746415 AACACATATT
* * * *
63746425 GATGCCACTGTCCTAGACAGGGTCTTACACG-AA-ATCGATTAAC
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAATATC-AAT-AC
* * *
63746468 GATGCCAATGTCCCAGACATGATCTTATACGTAATTTCAATAC
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAATAC
* * *
63746511 AATGCCAATGACCCAGACATGGTCTTACATGTAAT
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAAT
63746546 CACATCTCGA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 58 0.91
44 4 0.06
45 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (43 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAATAC
Found at i:63753465 original size:32 final size:32
Alignment explanation
Indices: 63753429--63753527 Score: 135
Period size: 32 Copynumber: 3.1 Consensus size: 32
63753419 TACTCAATTG
*
63753429 AATTTTTGTACATACCTGTACCATATTGTACC
1 AATTTTCGTACATACCTGTACCATATTGTACC
63753461 AATTTTCGTACATACCTGTACCATATTGTACC
1 AATTTTCGTACATACCTGTACCATATTGTACC
* * * * * *
63753493 AATTTCCGTAGATATCTGTATCATCTCGTACC
1 AATTTTCGTACATACCTGTACCATATTGTACC
63753525 AAT
1 AAT
63753528 CTCATACTCA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.38
Consensus pattern (32 bp):
AATTTTCGTACATACCTGTACCATATTGTACC
Found at i:63753636 original size:28 final size:28
Alignment explanation
Indices: 63753603--63753676 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 28
63753593 ACCCGATACC
* * *
63753603 TTGCACACTAAGTGTCGTTCTGGATGT-
1 TTGCACACTAAGTGCCATTCCGGATGTA
63753630 TTCGCACACTAAGTGCCATTCCGGATGTA
1 TT-GCACACTAAGTGCCATTCCGGATGTA
63753659 TTGCACACTAAGTGCCAT
1 TTGCACACTAAGTGCCAT
63753677 CCCCGATACT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 2 0.05
28 38 0.90
29 2 0.05
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (28 bp):
TTGCACACTAAGTGCCATTCCGGATGTA
Found at i:63753692 original size:28 final size:28
Alignment explanation
Indices: 63753575--63753703 Score: 95
Period size: 28 Copynumber: 4.6 Consensus size: 28
63753565 ATTCAATGTA
*
63753575 TCGCACACT-AGATGCCATACCCGATACCT
1 TCGCACACTAAG-TGCCATTCCCGATA-CT
* * ** **
63753604 T-GCACACTAAGTGTCGTTCTGGATGTT
1 TCGCACACTAAGTGCCATTCCCGATACT
*
63753631 TCGCACACTAAGTGCCATTCCGGATGTA-T
1 TCGCACACTAAGTGCCATTCCCGA--TACT
*
63753660 T-GCACACTAAGTGCCATCCCCGATACT
1 TCGCACACTAAGTGCCATTCCCGATACT
**
63753687 TCGCACGTTAAGTGCCA
1 TCGCACACTAAGTGCCA
63753704 CATATAATTA
Statistics
Matches: 79, Mismatches: 15, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
26 2 0.03
27 4 0.05
28 67 0.85
29 5 0.06
30 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (28 bp):
TCGCACACTAAGTGCCATTCCCGATACT
Found at i:63761596 original size:79 final size:82
Alignment explanation
Indices: 63761485--63761669 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
63761475 GCTACTCGTT
* * *
63761485 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
63761548 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
63761565 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
63761628 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
63761645 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63761670 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:63761669 original size:40 final size:40
Alignment explanation
Indices: 63761466--63761669 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
63761456 CGGAATTTAA
** *
63761466 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
63761506 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63761546 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63761585 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
63761625 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
63761665 CCGGA
1 CCGGA
63761670 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63763642 original size:56 final size:56
Alignment explanation
Indices: 63763556--63763668 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
63763546 AAAAACAGGG
*
63763556 TTTGGGAATACTTACTATTGAGCTTGGAAAGCTTGAAACCCTAGCTATAGAAACCC
1 TTTGGGAATACTTACTATTGAGCTTGGAAAGCTTGAAACCCTAACTATAGAAACCC
*
63763612 TTTGGGAATACTTACTATTGAGTTTGGAAAGCTTGAAACCCTAACTATAGAAACCC
1 TTTGGGAATACTTACTATTGAGCTTGGAAAGCTTGAAACCCTAACTATAGAAACCC
63763668 T
1 T
63763669 AGAAATTTCG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (56 bp):
TTTGGGAATACTTACTATTGAGCTTGGAAAGCTTGAAACCCTAACTATAGAAACCC
Found at i:63773407 original size:20 final size:20
Alignment explanation
Indices: 63773382--63773420 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
63773372 GAGGCAAAGC
*
63773382 ACACGCCCGTGTGGTTAGGA
1 ACACGCCCGTGTGCTTAGGA
63773402 ACACGCCCGTGTGCTTAGG
1 ACACGCCCGTGTGCTTAGG
63773421 GACATGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTAGGA
Found at i:63773530 original size:13 final size:13
Alignment explanation
Indices: 63773509--63773544 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
63773499 CCAAGCACAC
*
63773509 GCCCATGTCCATG
1 GCCCGTGTCCATG
*
63773522 GCCCGTGTCTATG
1 GCCCGTGTCCATG
63773535 GCCCGTGTCC
1 GCCCGTGTCC
63773545 CTCACACGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.08, C:0.39, G:0.28, T:0.25
Consensus pattern (13 bp):
GCCCGTGTCCATG
Found at i:63787735 original size:19 final size:20
Alignment explanation
Indices: 63787711--63787748 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
63787701 GGTACCACCA
63787711 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
63787730 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
63787749 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:63788137 original size:46 final size:46
Alignment explanation
Indices: 63787973--63788141 Score: 155
Period size: 46 Copynumber: 3.7 Consensus size: 46
63787963 AACCCGCCCC
* * * * * *
63787973 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * *
63788019 TAAATGAACTCAAACTCAACTCAACAAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
63788067 TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
63788112 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGAACTCAACTCAACGAGTT
63788142 TGGATGCTCA
Statistics
Matches: 96, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 51 0.53
47 27 0.28
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:63788147 original size:93 final size:93
Alignment explanation
Indices: 63787978--63788148 Score: 243
Period size: 93 Copynumber: 1.8 Consensus size: 93
63787968 GCCCCTAAGT
* * * *
63787978 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAATGAACTCAAACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAAACTCAACTCAA
63788043 CAAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
* * * **
63788071 GAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAAACTCAACTCAA
* *
63788136 CGAGTTTGGATGC
66 CAAGTTCGGATGC
63788149 TCAACCATCC
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAAACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:63795235 original size:47 final size:47
Alignment explanation
Indices: 63795113--63795240 Score: 156
Period size: 46 Copynumber: 2.7 Consensus size: 47
63795103 GGATGGTTGA
* *
63795113 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAG
* * *
63795161 G--TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA--AG
63795206 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
63795241 TATGGGCGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
43 6 0.09
45 4 0.06
46 28 0.41
47 28 0.41
48 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAAG
Found at i:63798248 original size:42 final size:42
Alignment explanation
Indices: 63798178--63798261 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
63798168 AGGGTCACAT
* *
63798178 AGTCGTGTGTCTCACATAGCTGAAAGACACGCCCGTGTCTCA
1 AGTCGTGTGCCTCACACAGCTGAAAGACACGCCCGTGTCTCA
* * *
63798220 AGTCGTGTGCCTCACACGGTTGAGAGACACGCCCGTGTCTCA
1 AGTCGTGTGCCTCACACAGCTGAAAGACACGCCCGTGTCTCA
63798262 GGCCGCATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (42 bp):
AGTCGTGTGCCTCACACAGCTGAAAGACACGCCCGTGTCTCA
Found at i:63803580 original size:15 final size:15
Alignment explanation
Indices: 63803549--63803614 Score: 60
Period size: 15 Copynumber: 4.4 Consensus size: 15
63803539 ATAAATTAAA
* *
63803549 TTCATTACTTAAATT
1 TTCAATACTTAATTT
63803564 TTCAATACTTAATTT
1 TTCAATACTTAATTT
* * *
63803579 TTGAACACTTATTTT
1 TTCAATACTTAATTT
* * *
63803594 TTCAACATTTAGTTT
1 TTCAATACTTAATTT
63803609 TTCAAT
1 TTCAAT
63803615 TTATCAAACA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 42 1.00
ACGTcount: A:0.30, C:0.14, G:0.03, T:0.53
Consensus pattern (15 bp):
TTCAATACTTAATTT
Found at i:63810376 original size:53 final size:53
Alignment explanation
Indices: 63810313--63810421 Score: 218
Period size: 53 Copynumber: 2.1 Consensus size: 53
63810303 TATCTGTAAA
63810313 AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
1 AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
63810366 AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
1 AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
63810419 AAG
1 AAG
63810422 ATTTTTTTTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.24, C:0.09, G:0.32, T:0.35
Consensus pattern (53 bp):
AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
Found at i:63810992 original size:18 final size:18
Alignment explanation
Indices: 63810966--63811007 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
63810956 AACTAAACCT
* * *
63810966 AAAAGAAAGTAAATGAAA
1 AAAAAAAAGAAAAAGAAA
63810984 AAAAAAAAGAAAAAGAAA
1 AAAAAAAAGAAAAAGAAA
63811002 AAAAAA
1 AAAAAA
63811008 GTGAGGAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.05
Consensus pattern (18 bp):
AAAAAAAAGAAAAAGAAA
Found at i:63819192 original size:15 final size:15
Alignment explanation
Indices: 63819174--63819220 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
63819164 TCAAAATTCA
63819174 AAAAATATAAAAACT
1 AAAAATATAAAAACT
* *
63819189 AAAATTGAT-CAAA-T
1 AAAAAT-ATAAAAACT
63819203 AAAAATATAAAAACT
1 AAAAATATAAAAACT
63819218 AAA
1 AAA
63819221 TCTGCAACTT
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
13 2 0.08
14 9 0.36
15 12 0.48
16 2 0.08
ACGTcount: A:0.70, C:0.06, G:0.02, T:0.21
Consensus pattern (15 bp):
AAAAATATAAAAACT
Found at i:63820460 original size:13 final size:14
Alignment explanation
Indices: 63820432--63820469 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
63820422 ACATATAAAC
*
63820432 ATAATGATATTTGAA
1 ATAAT-ATAATTGAA
63820447 ATAAT-TAATTGAA
1 ATAATATAATTGAA
63820460 ATAATATAAT
1 ATAATATAAT
63820470 ATATAAAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 12 0.57
14 4 0.19
15 5 0.24
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (14 bp):
ATAATATAATTGAA
Found at i:63832914 original size:26 final size:27
Alignment explanation
Indices: 63832885--63832935 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
63832875 AGAAAAATTG
*
63832885 AGAAGACT-AATTAAAATTTTCAAAAT
1 AGAAGACTCAATAAAAATTTTCAAAAT
**
63832911 AGAAGGTTCAATAAAAATTTTCAAA
1 AGAAGACTCAATAAAAATTTTCAAA
63832936 TATTCTGACG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.53, C:0.08, G:0.10, T:0.29
Consensus pattern (27 bp):
AGAAGACTCAATAAAAATTTTCAAAAT
Found at i:63837895 original size:21 final size:21
Alignment explanation
Indices: 63837856--63837895 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
63837846 TTTTTGATAA
* *
63837856 AATAAAAGTATTAAGATATTT
1 AATAAAAGTATAAAAATATTT
*
63837877 AATAAAATTATAAAAATAT
1 AATAAAAGTATAAAAATAT
63837896 ACTAATAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (21 bp):
AATAAAAGTATAAAAATATTT
Found at i:63838837 original size:2 final size:2
Alignment explanation
Indices: 63838828--63838858 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
63838818 TTTACTGAAA
63838828 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63838859 TACCGATGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:63844407 original size:93 final size:93
Alignment explanation
Indices: 63844248--63844418 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
63844238 CCCATAAGCG
* *
63844248 AACTCGGACTCAACTCAACGAGCTCGGGCGTCCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCAAC
63844313 GAGTTCGGATGCCTAGTTACATCTCACA
66 GAGTTCGGATGCCTAGTTACATCTCACA
* * * *
63844341 AACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCAAC
63844406 GAGTTCGGATGCC
66 GAGTTCGGATGCC
63844419 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACA
Found at i:63844414 original size:46 final size:46
Alignment explanation
Indices: 63844239--63844414 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
63844229 TGTAACCCGC
* * * * *
63844239 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTCCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
63844285 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
63844335 CTCA-CA---AACTCGGACTTAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
63844378 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63844415 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 1 0.01
46 60 0.56
47 27 0.25
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63845882 original size:17 final size:18
Alignment explanation
Indices: 63845851--63845884 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
63845841 ACCCCATAGC
63845851 CAAATATAGACAGAATAT
1 CAAATATAGACAGAATAT
63845869 CAAATATA-ACAGAATA
1 CAAATATAGACAGAATA
63845885 ACAGATACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.59, C:0.12, G:0.09, T:0.21
Consensus pattern (18 bp):
CAAATATAGACAGAATAT
Found at i:63847572 original size:21 final size:21
Alignment explanation
Indices: 63847533--63847573 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63847523 CGGGCGTATG
*
63847533 CCCTAATCACACAGTCGTGTA
1 CCCTAATCACACAGCCGTGTA
63847554 CCCTAATCACACTA-CCGTGT
1 CCCTAATCACAC-AGCCGTGT
63847574 GCCTCTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.27, C:0.37, G:0.12, T:0.24
Consensus pattern (21 bp):
CCCTAATCACACAGCCGTGTA
Found at i:63853092 original size:55 final size:53
Alignment explanation
Indices: 63853031--63853179 Score: 183
Period size: 55 Copynumber: 2.8 Consensus size: 53
63853021 ATGGCATTGG
* *
63853031 TAAGGCAAGGATCCCGTGTAAGACAATGTCAAGACATGGCATTGATGAGTGACTA
1 TAAGGCAAGGATCCCATGTAAGACCATGTCAAGACATGGCATTGATGAGT-AC-A
* * * *
63853086 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
1 TAAGGC-AAGGATCCCATGTAAGACCATGTCAAGACATGGCATTGATGAGTACA
* * *
63853139 TAAGGCAAAGATACCACGTAAGACCATGTCAAGACATGGCA
1 TAAGGCAAGGATCCCATGTAAGACCATGTCAAGACATGGCA
63853180 ATGGTAAGTT
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
52 3 0.04
53 33 0.41
54 1 0.01
55 40 0.49
56 4 0.05
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (53 bp):
TAAGGCAAGGATCCCATGTAAGACCATGTCAAGACATGGCATTGATGAGTACA
Found at i:63853164 original size:53 final size:53
Alignment explanation
Indices: 63853048--63853191 Score: 180
Period size: 53 Copynumber: 2.7 Consensus size: 53
63853038 AGGATCCCGT
* * * * * *
63853048 GTAAGACAATGTCAAGACATGGCATTGATGAGTGACTATAAGGCAAAGGTCCCAT
1 GTAAGACCATGTCAAGACATGGCATTGGTGAGT-TC-ATAAGGCAAAGATACCAC
* *
63853103 GTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAAGATACCAC
1 GTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATAAGGCAAAGATACCAC
* *
63853156 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 GTAAGACCATGTCAAGACATGGCATTGGTGAGTTCA
63853192 AAAAGGAAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 47 0.61
54 1 0.01
55 29 0.38
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (53 bp):
GTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATAAGGCAAAGATACCAC
Found at i:63854155 original size:13 final size:13
Alignment explanation
Indices: 63854137--63854162 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63854127 CCCTGTTCTG
63854137 GATTTATAAACTC
1 GATTTATAAACTC
63854150 GATTTATAAACTC
1 GATTTATAAACTC
63854163 ACTAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
GATTTATAAACTC
Found at i:63856375 original size:24 final size:22
Alignment explanation
Indices: 63856348--63856399 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
63856338 AAATTATTCA
63856348 ATTTATTTTATTATATATATAAAT
1 ATTT-TTTTATT-TATATATAAAT
* *
63856372 ATTTTTTTATTTATATTTATAT
1 ATTTTTTTATTTATATATAAAT
63856394 ATTTTT
1 ATTTTT
63856400 GTTTGCTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 15 0.58
23 7 0.27
24 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
ATTTTTTTATTTATATATAAAT
Found at i:63860005 original size:40 final size:36
Alignment explanation
Indices: 63859961--63860045 Score: 100
Period size: 37 Copynumber: 2.2 Consensus size: 36
63859951 TCAGTTAATT
*
63859961 TTATTTTTATTTTCTTTGCTATTATTTTTA-TAATCATTAA
1 TTATTTTTA-TTTCTTT--TATTATTATTACT-ATCATT-A
*
63860001 TTATTATTATTTCTTTTATTATTATTACTATCATTA
1 TTATTTTTATTTCTTTTATTATTATTACTATCATTA
63860037 TTATTTTTA
1 TTATTTTTA
63860046 GTAGTAGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
36 9 0.22
37 16 0.39
38 1 0.02
39 7 0.17
40 8 0.20
ACGTcount: A:0.26, C:0.07, G:0.01, T:0.66
Consensus pattern (36 bp):
TTATTTTTATTTCTTTTATTATTATTACTATCATTA
Found at i:63860008 original size:3 final size:3
Alignment explanation
Indices: 63859980--63860304 Score: 133
Period size: 3 Copynumber: 107.0 Consensus size: 3
63859970 TTTTCTTTGC
* * * *
63859980 TAT TAT TTT TAT AAT CAT TAAT TAT TAT TAT T-T CTTT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT -TAT TAT TAT TAT
* * * * * * * * *
63860026 TAC TAT CAT TAT TAT TTT TAG TAG TAG TAT TAT TAT CAT TAT TCT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** * * *
63860074 TAT TAT TGT CCT TAC TAT TGT TAT TCTT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * ** * *
63860120 TATT TAT TAC TAT TAT TGT TAGT T-T TAT TAT TAC TGC CAT TAT TTT
1 TA-T TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
63860166 TAT TAT TAC TGT TAT AAT TAT TA- TAT T-T CTCT T-T TGA- AATT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T-AT TA-T TA-T
* *
63860211 TACT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT TGT TAGT
1 TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* ** * * * * *
63860258 T-T TAT TAT TAC TGC CAT TAT TTT TAT TAT TAC TGT TAT AAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63860305 ATTTCTCTTT
Statistics
Matches: 237, Mismatches: 69, Indels: 32
0.70 0.20 0.09
Matches are distributed among these distances:
2 11 0.05
3 204 0.86
4 22 0.09
ACGTcount: A:0.27, C:0.07, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:63860273 original size:115 final size:116
Alignment explanation
Indices: 63860101--63860345 Score: 483
Period size: 115 Copynumber: 2.1 Consensus size: 116
63860091 TTGTTATTCT
63860101 TTATTATTATTATTATTATTATTTATTACTATTATTGTTAGTTTTATTATTACTGCCATTATTTT
1 TTATTATTATTATTATTATTATTTATTACTATTATTGTTAGTTTTATTATTACTGCCATTATTTT
63860166 TATTATTACTGTTATAATTATTATATTTCTCTTTTGAAATTTATTTACTTA
66 TATTATTACTGTTATAATTATTATATTTCTCTTTTGAAATTTATTTACTTA
63860217 TTATTATTATTATTATTATTA-TTATTACTATTATTGTTAGTTTTATTATTACTGCCATTATTTT
1 TTATTATTATTATTATTATTATTTATTACTATTATTGTTAGTTTTATTATTACTGCCATTATTTT
63860281 TATTATTACTGTTATAATTATTATATTTCTCTTTTGAAATTTATTTACTTA
66 TATTATTACTGTTATAATTATTATATTTCTCTTTTGAAATTTATTTACTTA
63860332 TTATTATTATTATT
1 TTATTATTATTATT
63860346 TTTAAAATAC
Statistics
Matches: 129, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
115 108 0.84
116 21 0.16
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.62
Consensus pattern (116 bp):
TTATTATTATTATTATTATTATTTATTACTATTATTGTTAGTTTTATTATTACTGCCATTATTTT
TATTATTACTGTTATAATTATTATATTTCTCTTTTGAAATTTATTTACTTA
Found at i:63862572 original size:23 final size:23
Alignment explanation
Indices: 63862529--63862572 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
63862519 TTGATAGAGT
*
63862529 AAAAAATATTTGAGATAATTAAA
1 AAAAAATATTTGAAATAATTAAA
*
63862552 AAAATAATATTT-AAATTATTA
1 AAAA-AATATTTGAAATAATTA
63862573 TTTGAATTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (23 bp):
AAAAAATATTTGAAATAATTAAA
Found at i:63864089 original size:18 final size:19
Alignment explanation
Indices: 63864066--63864101 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
63864056 AAAGATATAA
*
63864066 TTAGAA-TAATTTAGAATT
1 TTAGAACTAATTAAGAATT
63864084 TTAGAACTAATTAAGAAT
1 TTAGAACTAATTAAGAAT
63864102 GTAAATCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.47, C:0.03, G:0.11, T:0.39
Consensus pattern (19 bp):
TTAGAACTAATTAAGAATT
Found at i:63868725 original size:40 final size:40
Alignment explanation
Indices: 63868664--63868739 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
63868654 CGGTACTCTA
* **
63868664 TGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATATT
1 TGGTGTGTAGGGATGGATGGGTCAATTTTATCCCCATATT
*
63868704 TGGTGTGTAGGGATGGGTGGGTCAATTTTATCCCCA
1 TGGTGTGTAGGGATGGATGGGTCAATTTTATCCCCA
63868740 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.16, C:0.12, G:0.34, T:0.38
Consensus pattern (40 bp):
TGGTGTGTAGGGATGGATGGGTCAATTTTATCCCCATATT
Found at i:63886307 original size:44 final size:44
Alignment explanation
Indices: 63886259--63886450 Score: 242
Period size: 44 Copynumber: 4.4 Consensus size: 44
63886249 GAGTGAGATG
* * * *
63886259 AAGCTACAAATCCCA-CATCTCTGAAGTTACAGTAGATCAGATTA
1 AAGCTACAAATCCTATC-TCCCTAAAGTTACAGTAGAGCAGATTA
* * * *
63886303 AAGCTACAAATCTTATCTCCCTAAAGTTACAATTGAGCATATTA
1 AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
* * * * *
63886347 AAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTA
1 AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
63886391 AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
1 AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
*
63886435 AAGCGACAAATCCTAT
1 AAGCTACAAATCCTAT
63886451 ACCTCTGAAA
Statistics
Matches: 128, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 127 0.99
45 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.27
Consensus pattern (44 bp):
AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
Found at i:63886459 original size:88 final size:88
Alignment explanation
Indices: 63886259--63886659 Score: 306
Period size: 88 Copynumber: 4.4 Consensus size: 88
63886249 GAGTGAGATG
* * * * * * *
63886259 AAGCTACAAATCCCACATCTCTGAAGTTACAGTAGATCAGATTAAAGCTACAAATCTTATCTCCC
1 AAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCTTATCTCCC
* * *
63886324 TAAAGTTACAATTGAGCATATTA
66 TAAAGTTACAGTAGAGCAGATTA
* * *
63886347 AAGCTACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCCTATCTCC
1 AAGCTACAAATCCTATAC-CTCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCTTATCTCC
63886411 CTAAAGTTACAGTAGAGCAGATTA
65 CTAAAGTTACAGTAGAGCAGATTA
* * ** * * *
63886435 AAGCGACAAATCCTATACCTCTGAAATTTTATTGG-GTCAAATCAAATCTACCATAACGAGTCTT
1 AAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGAG-CAAATTAAAGCTA-C--AA--A-TCTT
* * * * *
63886499 ATTTCCCTGAAGTTGCAGTGGAACAGATTA
59 ATCTCCCTAAAGTTACAGTAGAGCAGATTA
* * * *
63886529 AAGCTACAAGTTACAAATCT-TATCTCTCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAATCT
1 AAGCTACAA-AT-C----CTATA-C-CTCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCT
* * *
63886593 TATCTCCCTGAAGTTGCAGTAGAGTAGATTGA
58 TATCTCCCTAAAGTTACAGTAGAGCAGATT-A
* * *
63886625 AA-CTACAATTCCTATACCCCTAAAGTTGCAGTGGA
1 AAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGA
63886660 TTAGAATAAG
Statistics
Matches: 249, Mismatches: 44, Indels: 40
0.75 0.13 0.12
Matches are distributed among these distances:
87 1 0.00
88 126 0.51
89 5 0.02
90 2 0.01
91 2 0.01
93 2 0.01
94 38 0.15
95 36 0.14
96 5 0.02
98 2 0.01
99 2 0.01
100 4 0.02
101 24 0.10
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.28
Consensus pattern (88 bp):
AAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCTTATCTCCC
TAAAGTTACAGTAGAGCAGATTA
Found at i:63886622 original size:44 final size:44
Alignment explanation
Indices: 63886540--63886674 Score: 139
Period size: 44 Copynumber: 3.1 Consensus size: 44
63886530 AGCTACAAGT
* * *
63886540 TACAAATCTTATCTCTCTGAAGTTGTAGTGGAACAGATTAAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAAGC
* *
63886584 TACAAATCTTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAA-C
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATT-AAAGC
* * * * * *
63886628 TACAATTCCTATAC-CCCTAAAGTTGCAGTGGATTAGAATAAGGC
1 TACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAATAGATTAAAGC
63886672 TAC
1 TAC
63886675 TTGGAAAAGA
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
43 2 0.03
44 70 0.92
45 4 0.05
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.30
Consensus pattern (44 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAAGC
Found at i:63890025 original size:30 final size:31
Alignment explanation
Indices: 63889989--63890059 Score: 117
Period size: 30 Copynumber: 2.3 Consensus size: 31
63889979 TTAGATTCAG
63889989 TGCTAATCTTCTATTCAAATTAATGGA-TTT
1 TGCTAATCTTCTATTCAAATTAATGGACTTT
63890019 TGCTAATCTTCTATTCAAATTAATGGACTTT
1 TGCTAATCTTCTATTCAAATTAATGGACTTT
* *
63890050 TACGAATCTT
1 TGCTAATCTT
63890060 GCCAAAATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 27 0.71
31 11 0.29
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (31 bp):
TGCTAATCTTCTATTCAAATTAATGGACTTT
Found at i:63891758 original size:23 final size:24
Alignment explanation
Indices: 63891724--63891773 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
63891714 TTCCTCATCT
* *
63891724 TTTCTATTTTTCTGTTTTC-TTTC
1 TTTCTATTTTTCTCTTTCCTTTTC
63891747 TTTCT-TTCTTTCTCTTTCCTTTTC
1 TTTCTATT-TTTCTCTTTCCTTTTC
63891771 TTT
1 TTT
63891774 TTGTTCTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 2 0.09
23 14 0.61
24 7 0.30
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.74
Consensus pattern (24 bp):
TTTCTATTTTTCTCTTTCCTTTTC
Found at i:63892723 original size:37 final size:37
Alignment explanation
Indices: 63892682--63892752 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
63892672 GATTTGCTAA
63892682 ACCATATGTGTTACACGTAATCTGTTATCTGTTCATT
1 ACCATATGTGTTACACGTAATCTGTTATCTGTTCATT
* *
63892719 ACCATATGTGTTATATGTAATCTGTTATCTGTTC
1 ACCATATGTGTTACACGTAATCTGTTATCTGTTC
63892753 TTATAAGCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.45
Consensus pattern (37 bp):
ACCATATGTGTTACACGTAATCTGTTATCTGTTCATT
Found at i:63899908 original size:24 final size:24
Alignment explanation
Indices: 63899860--63899913 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
63899850 TTTCAAAAAT
*
63899860 ATAATAATAAATTTAAATTGTATA
1 ATAATAATAAATTTAAATTGAATA
63899884 ATAATAAT-AATATTAATATT-AATA
1 ATAATAATAAAT-TTAA-ATTGAATA
63899908 A-AATAA
1 ATAATAA
63899914 AAGAAATCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 8 0.30
24 16 0.59
25 3 0.11
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
ATAATAATAAATTTAAATTGAATA
Found at i:63901178 original size:24 final size:26
Alignment explanation
Indices: 63901141--63901198 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
63901131 CCAGCTTGTC
* * * *
63901141 TATATTAAATTTTTTATAT-TATTTT
1 TATATAAAATTTTTAATATATATATA
63901166 TATATAAAATTTTTAATATATATATA
1 TATATAAAATTTTTAATATATATATA
63901192 TATATAA
1 TATATAA
63901199 TACATCAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 17 0.61
26 11 0.39
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
TATATAAAATTTTTAATATATATATA
Found at i:63905869 original size:26 final size:26
Alignment explanation
Indices: 63905840--63905892 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
63905830 TCAAACATGC
63905840 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
63905866 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
63905892 A
1 A
63905893 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:63907415 original size:26 final size:26
Alignment explanation
Indices: 63907377--63907434 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
63907367 CATGAAATTC
63907377 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
63907403 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
63907429 TTATCA
1 TTATCA
63907435 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:63911860 original size:41 final size:41
Alignment explanation
Indices: 63911810--63912006 Score: 276
Period size: 41 Copynumber: 4.9 Consensus size: 41
63911800 GAATAGATCA
*
63911810 AGCATTAGCGGCGTTTTTAACAAAGCGCCGCTAAAGATCTG
1 AGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAGATCTG
*
63911851 AGCATTAGCGGCGTTTTTAGGAAAGCGCCGCTAAAGATCTG
1 AGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAGATCTG
* *
63911892 -GACATTAGCGGCGTTTTTAGGAAAGCGCCCCTAAAGATCTG
1 AG-CATTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAGATCTG
* *
63911933 GGCATTAGCGGCGTTTTTAAAAAAGCGCCGCTAAAGATC-G
1 AGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAGATCTG
* *
63911973 AGCATTAGCGACGCTTTTTTA-AAA-CGCCGCTAAA
1 AGCATTAGCGGCG-TTTTTAAGAAAGCGCCGCTAAA
63912007 AGATTAAGCA
Statistics
Matches: 144, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 10 0.07
40 16 0.11
41 117 0.81
42 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.24
Consensus pattern (41 bp):
AGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAGATCTG
Found at i:63912570 original size:7 final size:7
Alignment explanation
Indices: 63912560--63912689 Score: 63
Period size: 7 Copynumber: 18.3 Consensus size: 7
63912550 ACTATTTAAA
63912560 GGTTTAG
1 GGTTTAG
63912567 GGTTTATG
1 GGTTTA-G
63912575 GGTTTAG
1 GGTTTAG
*
63912582 GGATTA-
1 GGTTTAG
* *
63912588 TGTTTAC
1 GGTTTAG
* *
63912595 GGCTTAT
1 GGTTTAG
63912602 GGTTTAAG
1 GGTTT-AG
*
63912610 GG-TTGG
1 GGTTTAG
63912616 GGTTTAAG
1 GGTTT-AG
63912624 GG-TTATG
1 GGTTTA-G
*
63912631 GG-CTAG
1 GGTTTAG
*
63912637 TGGTTAAG
1 -GGTTTAG
63912645 GGTTTATG
1 GGTTTA-G
63912653 GG-TTATG
1 GGTTTA-G
* *
63912660 GGTTAAT
1 GGTTTAG
63912667 GGTTTAG
1 GGTTTAG
*
63912674 GGTTTAA
1 GGTTTAG
63912681 GGTTTAG
1 GGTTTAG
63912688 GG
1 GG
63912690 GTTTTTATTT
Statistics
Matches: 93, Mismatches: 20, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
6 9 0.10
7 64 0.69
8 20 0.22
ACGTcount: A:0.18, C:0.02, G:0.39, T:0.41
Consensus pattern (7 bp):
GGTTTAG
Found at i:63912655 original size:29 final size:29
Alignment explanation
Indices: 63912615--63912682 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
63912605 TTAAGGGTTG
*
63912615 GGGTTTAAGGGTTATGGGCTAGTGGTTAA
1 GGGTTTAAGGGTTATGGGCTAATGGTTAA
* * *
63912644 GGGTTTATGGGTTATGGGTTAATGGTTTA
1 GGGTTTAAGGGTTATGGGCTAATGGTTAA
63912673 GGGTTTAAGG
1 GGGTTTAAGG
63912683 TTTAGGGGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.19, C:0.01, G:0.41, T:0.38
Consensus pattern (29 bp):
GGGTTTAAGGGTTATGGGCTAATGGTTAA
Found at i:63912691 original size:29 final size:28
Alignment explanation
Indices: 63912615--63912733 Score: 94
Period size: 29 Copynumber: 4.1 Consensus size: 28
63912605 TTAAGGGTTG
* * *
63912615 GGGTTTAAGGGTTATGGGCTAGTGGTTAA
1 GGGTTTAAGGGTTAGGGGTTA-TGGTTTA
* *
63912644 GGGTTTATGGGTTATGGGTTAATGGTTTA
1 GGGTTTAAGGGTTAGGGGTT-ATGGTTTA
* * ** *
63912673 GGGTTTAAGGTTTAGGGGTTTTTATTTT
1 GGGTTTAAGGGTTAGGGGTTATGGTTTA
* * *
63912701 GTGGTTTAAGGTTTAGGGGATATAGTTTA
1 G-GGTTTAAGGGTTAGGGGTTATGGTTTA
63912730 GGGT
1 GGGT
63912734 ACTTTAGTAG
Statistics
Matches: 73, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
28 8 0.11
29 64 0.88
30 1 0.01
ACGTcount: A:0.18, C:0.01, G:0.38, T:0.43
Consensus pattern (28 bp):
GGGTTTAAGGGTTAGGGGTTATGGTTTA
Found at i:63912730 original size:14 final size:14
Alignment explanation
Indices: 63912711--63912756 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
63912701 GTGGTTTAAG
63912711 GTTTAGGGGATATA
1 GTTTAGGGGATATA
* *
63912725 GTTTAGGGTACTTTA
1 GTTTAGGGGA-TATA
63912740 G--TAGGGGATATA
1 GTTTAGGGGATATA
63912752 GTTTA
1 GTTTA
63912757 ATGATTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
12 4 0.16
13 6 0.24
14 11 0.44
15 4 0.16
ACGTcount: A:0.26, C:0.02, G:0.33, T:0.39
Consensus pattern (14 bp):
GTTTAGGGGATATA
Found at i:63912963 original size:28 final size:28
Alignment explanation
Indices: 63912926--63913030 Score: 73
Period size: 28 Copynumber: 3.9 Consensus size: 28
63912916 TAGGGGATAT
*
63912926 ATATACTTTAGAGTTTAAGGTTAGAGGG
1 ATATAGTTTAGAGTTTAAGGTTAGAGGG
*
63912954 ATATAGTTTAGGGTTT-A---T---GGG
1 ATATAGTTTAGAGTTTAAGGTTAGAGGG
* * * *
63912975 ATATATTTTAGGGTTTAAGGTTATAAGG
1 ATATAGTTTAGAGTTTAAGGTTAGAGGG
63913003 ATATAGTTTA-ATGGTTTAAGGTTTAGAG
1 ATATAGTTTAGA--GTTTAAGG-TTAGAG
63913031 TATTGATTAA
Statistics
Matches: 59, Mismatches: 8, Indels: 18
0.69 0.09 0.21
Matches are distributed among these distances:
21 18 0.31
22 1 0.02
24 1 0.02
25 1 0.02
27 1 0.02
28 25 0.42
29 8 0.14
30 4 0.07
ACGTcount: A:0.30, C:0.01, G:0.28, T:0.41
Consensus pattern (28 bp):
ATATAGTTTAGAGTTTAAGGTTAGAGGG
Found at i:63912975 original size:21 final size:21
Alignment explanation
Indices: 63912951--63912991 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
63912941 TAAGGTTAGA
63912951 GGGATATAGTTTAGGGTTTAT
1 GGGATATAGTTTAGGGTTTAT
*
63912972 GGGATATATTTTAGGGTTTA
1 GGGATATAGTTTAGGGTTTA
63912992 AGGTTATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (21 bp):
GGGATATAGTTTAGGGTTTAT
Found at i:63913005 original size:49 final size:51
Alignment explanation
Indices: 63912899--63913012 Score: 160
Period size: 49 Copynumber: 2.2 Consensus size: 51
63912889 TATGGTTAGG
*
63912899 GGATATAGTTTAGGGTTTAGGGGATATATATACTTTAGAGTTTAAGGTTAGAG
1 GGATATAGTTTAGGGTTTAGGGGA-ATATATA-TTTAGAGTTTAAGGTTAGAA
* * *
63912952 GGATATAGTTTAGGGTTTATGGG-ATATAT-TTTAGGGTTTAAGGTTATAA
1 GGATATAGTTTAGGGTTTAGGGGAATATATATTTAGAGTTTAAGGTTAGAA
63913001 GGATATAGTTTA
1 GGATATAGTTTA
63913013 ATGGTTTAAG
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
49 29 0.51
51 6 0.11
53 22 0.39
ACGTcount: A:0.30, C:0.01, G:0.29, T:0.40
Consensus pattern (51 bp):
GGATATAGTTTAGGGTTTAGGGGAATATATATTTAGAGTTTAAGGTTAGAA
Found at i:63913024 original size:256 final size:252
Alignment explanation
Indices: 63912745--63913215 Score: 816
Period size: 256 Copynumber: 1.9 Consensus size: 252
63912735 CTTTAGTAGG
63912745 GGATATAGTTTAATGATTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
1 GGATATAGTTTAATGATTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
63912810 GGATCAAGAGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTT
66 GGATCAAGAGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTT
*
63912875 ATTATTTTATGGGTTATGGTTAGGGGATATAGTTTAGGGTTTAGGGGATATATATACTTTAGAGT
131 ATTATTTTATGGGTTATGGTTAGGGGATATAGTTTAGGGTTTAGAGG----ATATACTTTAGAGT
63912940 TTAAGGTTAGAGGGATATAGTTTAGGGTTTATGGGATATATTTTAGGGTTTAAGGTTATAA
192 TTAAGGTTAGAGGGATATAGTTTAGGGTTTATGGGATATATTTTAGGGTTTAAGGTTATAA
* *
63913001 GGATATAGTTTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGTTTTATTATTTTGTGGTTTAA
1 GGATATAGTTTAATGATTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
*
63913066 GGATCAAGGGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTT
66 GGATCAAGAGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTT
* * * * *
63913131 ATTGTTTTGTGGTTTATGGTTAGGGGATATAGTTTAGGTTTTAGAGGATATACTTTAGGGTTTAA
131 ATTATTTTATGGGTTATGGTTAGGGGATATAGTTTAGGGTTTAGAGGATATACTTTAGAGTTTAA
*
63913196 GGTTATAGGGATATAGTTTA
196 GGTTAGAGGGATATAGTTTA
63913216 ATGGTTTAAG
Statistics
Matches: 205, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
252 36 0.18
256 169 0.82
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (252 bp):
GGATATAGTTTAATGATTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
GGATCAAGAGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTT
ATTATTTTATGGGTTATGGTTAGGGGATATAGTTTAGGGTTTAGAGGATATACTTTAGAGTTTAA
GGTTAGAGGGATATAGTTTAGGGTTTATGGGATATATTTTAGGGTTTAAGGTTATAA
Found at i:63913153 original size:28 final size:28
Alignment explanation
Indices: 63913107--63913165 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
63913097 AATTCATACA
* *
63913107 TTTTGTGGTTAAGGCTTAGGGGTTATTG
1 TTTTGTGGTTAAGGCTTAGGGGATATAG
*
63913135 TTTTGTGGTTTATGG-TTAGGGGATATAG
1 TTTTGTGG-TTAAGGCTTAGGGGATATAG
63913163 TTT
1 TTT
63913166 AGGTTTTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 22 0.81
29 5 0.19
ACGTcount: A:0.15, C:0.02, G:0.34, T:0.49
Consensus pattern (28 bp):
TTTTGTGGTTAAGGCTTAGGGGATATAG
Found at i:63913179 original size:21 final size:21
Alignment explanation
Indices: 63913142--63913203 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
63913132 TTGTTTTGTG
* *
63913142 GTTTATGG-TTAGGGGATATA
1 GTTTAGGGTTTAGAGGATATA
*
63913162 GTTTAGGTTTTAGAGGATATA
1 GTTTAGGGTTTAGAGGATATA
* *
63913183 CTTTAGGGTTTA-AGGTTATA
1 GTTTAGGGTTTAGAGGATATA
63913203 G
1 G
63913204 GGATATAGTT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
20 13 0.38
21 21 0.62
ACGTcount: A:0.26, C:0.02, G:0.31, T:0.42
Consensus pattern (21 bp):
GTTTAGGGTTTAGAGGATATA
Found at i:63913199 original size:29 final size:30
Alignment explanation
Indices: 63913162--63913233 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
63913152 AGGGGATATA
63913162 GTTT-AGGTTTTAGAGGATATACTTT-AGG
1 GTTTAAGGTTTTAGAGGATATACTTTAAGG
* * *
63913190 GTTTAAGGTTATAG-GGATATAGTTTAATG
1 GTTTAAGGTTTTAGAGGATATACTTTAAGG
63913219 GTTTAAGG-TTTAGAG
1 GTTTAAGGTTTTAGAG
63913234 TTTTGATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 18 0.49
29 19 0.51
ACGTcount: A:0.28, C:0.01, G:0.29, T:0.42
Consensus pattern (30 bp):
GTTTAAGGTTTTAGAGGATATACTTTAAGG
Found at i:63914676 original size:44 final size:45
Alignment explanation
Indices: 63914593--63914715 Score: 140
Period size: 44 Copynumber: 2.7 Consensus size: 45
63914583 CATAAATGAT
* * *
63914593 CCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTGAG
1 CCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAATAAG
* *
63914639 CCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATAAT
1 CCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAG
* * * *
63914683 TCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 CCATGTAAGTCCATATTAAA-ATATGGCATTGG
63914716 CAGGATATTG
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.55
45 1 0.02
46 28 0.43
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (45 bp):
CCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAG
Found at i:63916311 original size:6 final size:6
Alignment explanation
Indices: 63916300--63916329 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
63916290 TGACTTTCTC
63916300 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
63916330 TTCTGTCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (6 bp):
CCCTCT
Found at i:63918497 original size:183 final size:183
Alignment explanation
Indices: 63918183--63918551 Score: 693
Period size: 183 Copynumber: 2.0 Consensus size: 183
63918173 GATATAGTTT
63918183 CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
* *
63918248 ACTATTGTTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATATATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
63918313 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAAATGAAATATATTTGGTGCTACTCTTATAATCTTA
*
63918366 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
63918431 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
63918496 GTTTTTATATTTGTTTAAAATGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAAATGAAATATATTTGGTGCTACTCTTATAATCTTA
63918549 CAT
1 CAT
63918552 CTGTTCTAGG
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 181 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (183 bp):
CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTTATATTTGCTTAAAATGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:63919540 original size:53 final size:49
Alignment explanation
Indices: 63919443--63919547 Score: 120
Period size: 53 Copynumber: 2.1 Consensus size: 49
63919433 GAAGGGCCAC
** *
63919443 TTATAAATAATTTTATCAATATAATAATATTGATCACTGTTTAAATATA
1 TTATAAATAATTTTATCAATATAATAATATTGATCACTACTTAAATAAA
* * *
63919492 TTATAACTAATTTTTATCAAAATAGTATTAATATTGATCATTACTTAAATAAA
1 TTATAAATAA-TTTTATC--AATA-TAATAATATTGATCACTACTTAAATAAA
63919545 TTA
1 TTA
63919548 CATAACTCAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
49 9 0.20
50 7 0.15
52 4 0.09
53 26 0.57
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.45
Consensus pattern (49 bp):
TTATAAATAATTTTATCAATATAATAATATTGATCACTACTTAAATAAA
Found at i:63922173 original size:19 final size:19
Alignment explanation
Indices: 63922145--63922188 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
63922135 TATCCAATTG
*
63922145 AAAGGTGCTAATTTATTTC
1 AAAGGCGCTAATTTATTTC
63922164 AAAGGCGCTAATTTATTTC
1 AAAGGCGCTAATTTATTTC
63922183 AAAGGC
1 AAAGGC
63922189 ATTCCACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (19 bp):
AAAGGCGCTAATTTATTTC
Found at i:63925521 original size:44 final size:41
Alignment explanation
Indices: 63925473--63925554 Score: 137
Period size: 44 Copynumber: 1.9 Consensus size: 41
63925463 GCAAAACTGG
63925473 GCAAATTAGCGGCGTTTTTTAAAAAAAGCGCCGCTAAAAGTACT
1 GCAAATTAGCGGCGTTTTTT---AAAAGCGCCGCTAAAAGTACT
63925517 GCAAATTAGCGGCGTTTTTTAAAAGCGCCGCTAAAAGT
1 GCAAATTAGCGGCGTTTTTTAAAAGCGCCGCTAAAAGT
63925555 CTTGGTCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
41 18 0.47
44 20 0.53
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (41 bp):
GCAAATTAGCGGCGTTTTTTAAAAGCGCCGCTAAAAGTACT
Found at i:63925553 original size:41 final size:42
Alignment explanation
Indices: 63925473--63925594 Score: 142
Period size: 41 Copynumber: 2.9 Consensus size: 42
63925463 GCAAAACTGG
63925473 GCAAATTAGCGGCGTTTTTTAAAAAAAGCGCCGCTAAAAGTACT
1 GCAAATTAGCGGCGTTTTTT--AAAAAGCGCCGCTAAAAGTACT
63925517 GCAAATTAGCGGCGTTTTTT-AAAAGCGCCGCTAAAAGT-CTT
1 GCAAATTAGCGGCGTTTTTTAAAAAGCGCCGCTAAAAGTAC-T
**** *
63925558 GGTCTTTATCGG-GTTTTTTTAAAAAGCGCCGCTAAAA
1 GCAAATTAGCGGCG-TTTTTTAAAAAGCGCCGCTAAAA
63925595 ATCCTGGTCT
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
40 2 0.03
41 32 0.46
42 16 0.23
44 20 0.29
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (42 bp):
GCAAATTAGCGGCGTTTTTTAAAAAGCGCCGCTAAAAGTACT
Found at i:63925590 original size:42 final size:42
Alignment explanation
Indices: 63925478--63925723 Score: 180
Period size: 42 Copynumber: 5.7 Consensus size: 42
63925468 ACTGGGCAAA
****
63925478 TTAGCGGCG-TTTTTTAAAAAAAGCGCCGCTAAAAGTAC-TGCAAA
1 TTAGCGG-GATTTTTT--AAAAAGCGCCGCTAAAAGT-CTTGGTCT
63925522 TTAGCGGCG-TTTTTT-AAAAGCGCCGCTAAAAGTCTTGGTCT
1 TTAGCGG-GATTTTTTAAAAAGCGCCGCTAAAAGTCTTGGTCT
* * * *
63925563 TTATCGGGTTTTTTTAAAAAGCGCCGCTAAAAATCCTGGTCT
1 TTAGCGGGATTTTTTAAAAAGCGCCGCTAAAAGTCTTGGTCT
* * ** *
63925605 TTAGCAGCGCTTTTAGAAAAA-CGCCGCTAAATGTCTTGGTCT
1 TTAGC-GGGATTTTTTAAAAAGCGCCGCTAAAAGTCTTGGTCT
* * * *
63925647 TTAGCGGCATTTTTTAAGAAAGCGCCGCT-AAAGACTAGGATTT
1 TTAGCGGGATTTTTTAA-AAAGCGCCGCTAAAAGTCTTGG-TCT
* *
63925690 TTAGCGGCGCTTTTTTCAAAAAAACGCCGCTAAA
1 TTAGCGG-GATTTTTT--AAAAAGCGCCGCTAAA
63925724 GGCAAAAAAA
Statistics
Matches: 164, Mismatches: 27, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
40 2 0.01
41 39 0.24
42 61 0.37
43 27 0.16
44 21 0.13
45 10 0.06
46 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (42 bp):
TTAGCGGGATTTTTTAAAAAGCGCCGCTAAAAGTCTTGGTCT
Found at i:63925619 original size:41 final size:41
Alignment explanation
Indices: 63925478--63925678 Score: 188
Period size: 42 Copynumber: 4.7 Consensus size: 41
63925468 ACTGGGCAAA
* ****
63925478 TTAGCGGCGTTTTTTAAAAAAAGCGCCGCTAAAAGTACTGCAAA
1 TTAGCGGCG-TTTTT--AAAAAGCGCCGCTAAAAGTCCTGGTCT
* *
63925522 TTAGCGGCGTTTTTTAAAAGCGCCGCTAAAAGTCTTGGTCT
1 TTAGCGGCGTTTTTAAAAAGCGCCGCTAAAAGTCCTGGTCT
* *
63925563 TTATCGG-GTTTTTTTAAAAAGCGCCGCTAAAAATCCTGGTCT
1 TTAGCGGCG--TTTTTAAAAAGCGCCGCTAAAAGTCCTGGTCT
* * * * *
63925605 TTAGCAGCGCTTTTAGAAAAACGCCGCTAAATGTCTTGGTCT
1 TTAGCGGCGTTTTTA-AAAAGCGCCGCTAAAAGTCCTGGTCT
*
63925647 TTAGCGGCATTTTTTAAGAAAGCGCCGCTAAA
1 TTAGCGGC-GTTTTTAA-AAAGCGCCGCTAAA
63925679 GACTAGGATT
Statistics
Matches: 129, Mismatches: 22, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
40 1 0.01
41 31 0.24
42 64 0.50
43 24 0.19
44 9 0.07
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (41 bp):
TTAGCGGCGTTTTTAAAAAGCGCCGCTAAAAGTCCTGGTCT
Found at i:63925700 original size:85 final size:83
Alignment explanation
Indices: 63925478--63925723 Score: 237
Period size: 84 Copynumber: 2.9 Consensus size: 83
63925468 ACTGGGCAAA
* * * **
63925478 TTAGCGGCGTTTTTTAAAAAAAGCGCCGCTAAAAGTACTGCA-AATTAGCGGCG-TTTTTTAAAA
1 TTAGCGGCATTTTTT--AAAAAGCGCCGCT-AAAG-ACTGGATATTTAGCGGCGCTTTTAAAAAA
*
63925541 GCGCCGCTAAAAGTCTTGGTCT
62 ACGCCGCTAAAAGTCTTGGTCT
* ** * * * *
63925563 TTATCGGGTTTTTTTAAAAAGCGCCGCTAAAAATCCTGG-TCTTTAGCAGCGCTTTTAGAAAAAC
1 TTAGCGGCATTTTTTAAAAAGCGCCGCTAAAGA--CTGGATATTTAGCGGCGCTTTTAAAAAAAC
*
63925627 GCCGCTAAATGTCTTGGTCT
64 GCCGCTAAAAGTCTTGGTCT
*
63925647 TTAGCGGCATTTTTTAAGAAAGCGCCGCTAAAGACTAGGATTTTTAGCGGCGCTTTTTTCAAAAA
1 TTAGCGGCATTTTTTAA-AAAGCGCCGCTAAAGACT-GGATATTTAGCGGCGC--TTTT-AAAAA
63925712 AACGCCGCTAAA
61 AACGCCGCTAAA
63925724 GGCAAAAAAA
Statistics
Matches: 132, Mismatches: 19, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
81 1 0.01
82 3 0.02
83 26 0.20
84 44 0.33
85 38 0.29
87 4 0.03
88 16 0.12
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (83 bp):
TTAGCGGCATTTTTTAAAAAGCGCCGCTAAAGACTGGATATTTAGCGGCGCTTTTAAAAAAACGC
CGCTAAAAGTCTTGGTCT
Found at i:63932651 original size:25 final size:23
Alignment explanation
Indices: 63932633--63932699 Score: 64
Period size: 24 Copynumber: 2.7 Consensus size: 23
63932623 AAATAGATAT
63932633 TATAACAAGCAATTTAAATGAATAG
1 TATAA-AA-CAATTTAAATGAATAG
*
63932658 TATAAAACAATTTAAAAT-AATTAA
1 TATAAAACAATTT-AAATGAA-TAG
63932682 TATACAAAACAATTTAAA
1 TAT--AAAACAATTTAAA
63932700 ATAAAATAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
23 8 0.22
24 11 0.30
25 8 0.22
26 10 0.27
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.30
Consensus pattern (23 bp):
TATAAAACAATTTAAATGAATAG
Found at i:63932729 original size:46 final size:46
Alignment explanation
Indices: 63932659--63932749 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
63932649 AATGAATAGT
* *
63932659 ATAAAACAATTTAAAATAATTAATATACAAAACAATTTAAAATAAA
1 ATAAAACAACTTAAAATAAATAATATACAAAACAATTTAAAATAAA
* * *
63932705 ATAAAGCAACTTAAAATAAATAATATATATAACAATTTAAAATAA
1 ATAAAACAACTTAAAATAAATAATATACAAAACAATTTAAAATAA
63932750 CATATAGAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.64, C:0.07, G:0.01, T:0.29
Consensus pattern (46 bp):
ATAAAACAACTTAAAATAAATAATATACAAAACAATTTAAAATAAA
Found at i:63932749 original size:26 final size:24
Alignment explanation
Indices: 63932548--63932980 Score: 155
Period size: 26 Copynumber: 17.7 Consensus size: 24
63932538 CAAAAGAAAT
* *
63932548 AAATAAATAACATAAAACCATTTA
1 AAATAAATAATATAAAACAATTTA
* * * *
63932572 GAATAAAT-A-ATGAGACAATTTT
1 AAATAAATAATATAAAACAATTTA
*
63932594 AAATAAATAATACATAAAAAATAAGTTTA
1 AAATAAATAAT--AT--AAAACAA-TTTA
* *
63932623 AAATAGATATTATAACAAGCAATTT-
1 AAATAAATAATATAA-AA-CAATTTA
* *
63932648 AAATGAATAGTATAAAACAATTTA
1 AAATAAATAATATAAAACAATTTA
*
63932672 AAATAATTAATATACAAAACAATTTA
1 AAATAAATAATAT--AAAACAATTTA
* *
63932698 AAAT--A-AA-ATAAAGCAACTTA
1 AAATAAATAATATAAAACAATTTA
63932718 AAATAAATAATATATATAACAATTTA
1 AAATAAATAATATA-A-AACAATTTA
* * * *
63932744 AAAT-AA-CATATAGAA-AGTCTA
1 AAATAAATAATATAAAACAATTTA
* * *
63932765 GAATGAATAATATGTAAAAAGAAATTTA
1 AAATAAATAATA--T-AAAA-CAATTTA
* * *
63932793 AAATAAATAATAAAAAATAGTTTA
1 AAATAAATAATATAAAACAATTTA
* * *
63932817 ATATAAATAATAT-ATATAA---A
1 AAATAAATAATATAAAACAATTTA
* *
63932837 AAATAAATAATGTATAAAAGAGTTTA
1 AAATAAATAA--TATAAAACAATTTA
* * *
63932863 AGATAAATAA-ATAAAAAAATGTA
1 AAATAAATAATATAAAACAATTTA
* * *
63932886 AAGA-AATTAATATATAAAATAATTCA
1 AA-ATAAAT-A-ATATAAAACAATTTA
*
63932912 AAAT-AATATGTATTAAAACAATTTA
1 AAATAAATA-ATA-TAAAACAATTTA
* *
63932937 AAATGAATACTATAAAA-ATATTTTA
1 AAATAAATAATATAAAACA-A-TTTA
*
63932962 AAATGAATAACATATAAAA
1 AAATAAAT-A-ATATAAAA
63932981 TAGTTTATAA
Statistics
Matches: 306, Mismatches: 61, Indels: 81
0.68 0.14 0.18
Matches are distributed among these distances:
20 23 0.08
21 7 0.02
22 26 0.08
23 37 0.12
24 55 0.18
25 54 0.18
26 63 0.21
27 11 0.04
28 18 0.06
29 12 0.04
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (24 bp):
AAATAAATAATATAAAACAATTTA
Found at i:63932806 original size:24 final size:24
Alignment explanation
Indices: 63932779--63932971 Score: 71
Period size: 25 Copynumber: 8.0 Consensus size: 24
63932769 GAATAATATG
63932779 TAAAAAGA-AATTTAAAATAAATAA
1 TAAAAA-ATAATTTAAAATAAATAA
* *
63932803 TAAAAAATAGTTTAATATAAATAA
1 TAAAAAATAATTTAAAATAAATAA
* *
63932827 T-ATATATAA---AAAATAAATAA
1 TAAAAAATAATTTAAAATAAATAA
* * * *
63932847 TGTATAAAAGAGTTTAAGATAAATAA
1 --TAAAAAATAATTTAAAATAAATAA
* *
63932873 -ATAAAAA-AATGTAAAGA-AATTAA
1 TA-AAAAATAATTTAAA-ATAAATAA
* *
63932896 TATATAAAATAATTCAAAAT-AATATG
1 TA-A-AAAATAATTTAAAATAAATA-A
* * * *
63932922 TATTAAAACAATTTAAAATGAATAC
1 TA-AAAAATAATTTAAAATAAATAA
* *
63932947 TATAAAAATATTTTAAAATGAATAA
1 TA-AAAAATAATTTAAAATAAATAA
63932972 CATATAAAAT
Statistics
Matches: 125, Mismatches: 29, Indels: 29
0.68 0.16 0.16
Matches are distributed among these distances:
20 10 0.08
22 1 0.01
23 20 0.16
24 29 0.23
25 42 0.34
26 23 0.18
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.31
Consensus pattern (24 bp):
TAAAAAATAATTTAAAATAAATAA
Found at i:63932954 original size:25 final size:27
Alignment explanation
Indices: 63932926--63932980 Score: 78
Period size: 25 Copynumber: 2.1 Consensus size: 27
63932916 AATATGTATT
63932926 AAAACAATTTAAAATGAAT-AC-TATA
1 AAAACAATTTAAAATGAATAACATATA
* *
63932951 AAAATATTTTAAAATGAATAACATATA
1 AAAACAATTTAAAATGAATAACATATA
63932978 AAA
1 AAA
63932981 TAGTTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 17 0.65
26 2 0.08
27 7 0.27
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (27 bp):
AAAACAATTTAAAATGAATAACATATA
Found at i:63932987 original size:26 final size:25
Alignment explanation
Indices: 63932933--63932987 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
63932923 ATTAAAACAA
*
63932933 TTTAAAATGAATACTATAAAAATAT
1 TTTAAAATGAATACTATAAAAATAG
63932958 TTTAAAATGAATAAC-ATATAAAATAG
1 TTTAAAATGAAT-ACTATA-AAAATAG
63932984 TTTA
1 TTTA
63932988 TAAAAGTTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (25 bp):
TTTAAAATGAATACTATAAAAATAG
Found at i:63934827 original size:44 final size:44
Alignment explanation
Indices: 63934707--63935150 Score: 299
Period size: 44 Copynumber: 10.0 Consensus size: 44
63934697 AGGATTTGTA
* * ** * * *
63934707 ACTTGTAGCTTTAATCTATTCCATTGCACCTTCAGGGAAATAAG
1 ACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * * *
63934751 A-TTCGCTAAATTCAGTTTGCTTCACTGCAACTTTATGGAGATAAG
1 ACTT-G-TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* *
63934796 ACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGG
1 ACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-G
* * *
63934841 TTCTTG--GCTTTC-ATCTACTCCACTGCAACTTCAGGGAGATAAG
1 -ACTTGTAAC-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * * *
63934884 ATTTACTATA-TTCAGTCTGTTCCACTGCAACTTTAGGGAAATAAG
1 ACTT-GTA-ACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * *
63934929 ACTTGTAATTTCAA-CATGCTCTACTGCAACTTCAGGGAGCTAAG
1 ACTTGTAACTTCAATC-TGCTCCACTGCAACTTCAGGGAGATAAG
** * * **
63934973 GTTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAAAGATAAG
1 ACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * * * *
63935017 ATTTGCTATCTTTAGTCTGTTCCACTACAACTTCAGGAAGATAAG
1 ACTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * *
63935062 ACTCGTAACTTAAACCTGCCCCACTGCAACTTCAGGG-GTATAGG
1 ACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG-ATAAG
* ** * *
63935106 ATTTGTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAG
1 ACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
63935150 A
1 A
63935151 TTCGCCATAA
Statistics
Matches: 305, Mismatches: 78, Indels: 34
0.73 0.19 0.08
Matches are distributed among these distances:
42 2 0.01
43 6 0.02
44 193 0.63
45 98 0.32
46 6 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (44 bp):
ACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
Found at i:63934960 original size:133 final size:131
Alignment explanation
Indices: 63934709--63935152 Score: 516
Period size: 133 Copynumber: 3.3 Consensus size: 131
63934699 GATTTGTAAC
* * * * * * * *
63934709 TTGTAGCTTTAATCTATTCCATTGCACCTTCAGGGAAATAAGATTCGCTAAATTCAGTTTGCTT-
1 TTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATATTCAGTCTG-TTC
* *
63934773 CACTGCAACTTTATGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATA
65 CACTGCAACTTTA-GGAAATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAG-TA
63934838 AGGT
128 AGGT
* *
63934842 TCT-TGGCTTTCATCTACTCCACTGCAACTTCAGGGAGATAAGATTTACTATATTCAGTCTGTTC
1 T-TGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATATTCAGTCTGTTC
* * *
63934906 CACTGCAACTTTAGGGAAATAAGACTTGTAATTTCAACATGCTCTACTGCAACTTCAGGGAGCTA
65 CACTGCAACTTTA-GGAAATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAG-TA
63934971 AGGT
128 AGGT
* * * * ** * *
63934975 TTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAAAGATAAGATTTGCTATCTTTAGTCTGTTCC
1 TTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATATTCAGTCTGTTCC
* * * * *
63935040 ACTACAACTTCAGGAAGATAAGACTCGTAACTTAAACCTGCCCCACTGCAACTTCAGGG-GTATA
66 ACTGCAACTTTAGGAA-ATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGTA-A
63935104 GGAT
129 GG-T
* *
63935108 TTGTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATT
1 TTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATT
63935153 CGCCATAATA
Statistics
Matches: 264, Mismatches: 41, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
131 2 0.01
132 11 0.04
133 250 0.95
134 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (131 bp):
TTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATATTCAGTCTGTTCC
ACTGCAACTTTAGGAAATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGTAAGG
T
Found at i:63943288 original size:19 final size:20
Alignment explanation
Indices: 63943272--63943318 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
63943262 TTATGAAACT
*
63943272 TAATGCATATG-ATGAAATG
1 TAATGCAAATGAATGAAATG
63943291 TAATGCAAATGAATGAAATG
1 TAATGCAAATGAATGAAATG
63943311 -AATGCAAA
1 TAATGCAAA
63943319 AAGGGGCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 18 0.69
20 8 0.31
ACGTcount: A:0.49, C:0.06, G:0.19, T:0.26
Consensus pattern (20 bp):
TAATGCAAATGAATGAAATG
Found at i:63944338 original size:15 final size:15
Alignment explanation
Indices: 63944318--63944352 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
63944308 TATAATTATC
63944318 GCCTTGATCAATACT
1 GCCTTGATCAATACT
63944333 GCCTTGATCAATACT
1 GCCTTGATCAATACT
63944348 GCCTT
1 GCCTT
63944353 AACTCGAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (15 bp):
GCCTTGATCAATACT
Found at i:63947117 original size:46 final size:48
Alignment explanation
Indices: 63947019--63947127 Score: 132
Period size: 46 Copynumber: 2.3 Consensus size: 48
63947009 TTATAACGAG
* * *
63947019 CAATTTAAAATGAATAGTATAAAACAATTTAAGATAATTAATATACAAAA
1 CAATTTAAAAT-AATAG-ATAAAACAACTTAAAATAAATAATATACAAAA
* * *
63947069 CAATTTAAAATAA-A-ATAAAGCAACTTAAAATAAATAATATATATAA
1 CAATTTAAAATAATAGATAAAACAACTTAAAATAAATAATATACAAAA
63947115 CAATTTAAAATAA
1 CAATTTAAAATAA
63947128 CATGTAGAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 39 0.74
48 1 0.02
49 2 0.04
50 11 0.21
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.29
Consensus pattern (48 bp):
CAATTTAAAATAATAGATAAAACAACTTAAAATAAATAATATACAAAA
Found at i:63947124 original size:26 final size:24
Alignment explanation
Indices: 63946925--63947127 Score: 130
Period size: 26 Copynumber: 8.2 Consensus size: 24
63946915 CAAAAGAATG
* *
63946925 AAATAAATAACATAAAACCATTTA
1 AAATAAATAATATAAAACAATTTA
* * *
63946949 AAATAAAT-A-ATGAGACAATTTT
1 AAATAAATAATATAAAACAATTTA
*
63946971 AAATAAATAATACATAAAAAATAAGTTTA
1 AAATAAATAAT--AT--AAAACAA-TTTA
* * *
63947000 AAATAGATATTATAACGAGCAATTTA
1 AAATAAATAATATAA--AACAATTTA
* *
63947026 AAATGAATAGTATAAAACAATTTA
1 AAATAAATAATATAAAACAATTTA
* *
63947050 AGATAATTAATATACAAAACAATTTA
1 AAATAAATAATAT--AAAACAATTTA
* *
63947076 AAAT--A-AA-ATAAAGCAACTTA
1 AAATAAATAATATAAAACAATTTA
63947096 AAATAAATAATATATATAACAATTTA
1 AAATAAATAATATA-A-AACAATTTA
63947122 AAATAA
1 AAATAA
63947128 CATGTAGAAA
Statistics
Matches: 136, Mismatches: 26, Indels: 32
0.70 0.13 0.16
Matches are distributed among these distances:
20 13 0.10
22 20 0.15
23 6 0.04
24 28 0.21
25 3 0.02
26 45 0.33
27 5 0.04
28 4 0.03
29 12 0.09
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.29
Consensus pattern (24 bp):
AAATAAATAATATAAAACAATTTA
Found at i:63947201 original size:30 final size:30
Alignment explanation
Indices: 63947167--63947225 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
63947157 TAAAAAGAAA
63947167 TTTAAAATAAATAATAAAAATAAAAAATAG
1 TTTAAAATAAATAATAAAAATAAAAAATAG
* * *
63947197 TTTAATATAAATAATATATATAAAAAATA
1 TTTAAAATAAATAATAAAAATAAAAAATA
63947226 AAATAATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (30 bp):
TTTAAAATAAATAATAAAAATAAAAAATAG
Found at i:63947343 original size:25 final size:27
Alignment explanation
Indices: 63947315--63947369 Score: 78
Period size: 25 Copynumber: 2.1 Consensus size: 27
63947305 AATATGTATT
*
63947315 AAAACAGTTTAAAATGAAT-AC-TATA
1 AAAAAAGTTTAAAATGAATAACATATA
*
63947340 AAAAAATTTTAAAATGAATAACATATA
1 AAAAAAGTTTAAAATGAATAACATATA
63947367 AAA
1 AAA
63947370 TAGTTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 17 0.65
26 2 0.08
27 7 0.27
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (27 bp):
AAAAAAGTTTAAAATGAATAACATATA
Found at i:63947376 original size:26 final size:24
Alignment explanation
Indices: 63947314--63947376 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
63947304 TAATATGTAT
*
63947314 TAAAACAGTTTAAAATGAATACTA
1 TAAAAAAGTTTAAAATGAATACTA
*
63947338 TAAAAAAATTTTAAAATGAATAACATA
1 T-AAAAAAGTTTAAAATGAAT-AC-TA
*
63947365 TAAAATAGTTTA
1 TAAAAAAGTTTA
63947377 TAAAAGCTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 1 0.03
25 17 0.53
26 11 0.34
27 3 0.09
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.32
Consensus pattern (24 bp):
TAAAAAAGTTTAAAATGAATACTA
Found at i:63956237 original size:17 final size:17
Alignment explanation
Indices: 63956204--63956238 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
63956194 TTTCTTCTCC
*
63956204 GTTTTTGTTCACTTTTG
1 GTTTTTGTTCACCTTTG
*
63956221 GTTTTTGTTCCCCTTTG
1 GTTTTTGTTCACCTTTG
63956238 G
1 G
63956239 CCAAATCTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.03, C:0.17, G:0.20, T:0.60
Consensus pattern (17 bp):
GTTTTTGTTCACCTTTG
Found at i:63960777 original size:14 final size:15
Alignment explanation
Indices: 63960750--63960778 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63960740 TACCTGGTAA
63960750 TGAGCATACATATTT
1 TGAGCATACATATTT
63960765 TGAGCAT-CATATTT
1 TGAGCATACATATTT
63960779 GTTAGCACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (15 bp):
TGAGCATACATATTT
Found at i:63964616 original size:18 final size:18
Alignment explanation
Indices: 63964592--63964632 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
63964582 CATTTTAATT
*
63964592 ATAAAAAATAAATTAAGTA
1 ATAAAAATTAAATT-AGTA
63964611 ATAAAAATTAAATTAGTA
1 ATAAAAATTAAATTAGTA
63964629 ATAA
1 ATAA
63964633 CTAAATCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (18 bp):
ATAAAAATTAAATTAGTA
Found at i:63969932 original size:15 final size:15
Alignment explanation
Indices: 63969908--63970028 Score: 54
Period size: 15 Copynumber: 7.7 Consensus size: 15
63969898 TTGGTATTTT
63969908 ATTATCTATTATTATC
1 ATTAT-TATTATTATC
63969924 ATTATTATTATTTATTC
1 ATTATTATTA-TTA-TC
* *
63969941 ATCTAATTGTTTATTACCC
1 AT-T-ATT-ATTATTA-TC
*
63969960 ATTTTGTACTTATATAT-
1 ATTAT-TA-TTAT-TATC
* *
63969977 ATTATTCTGATT-TC
1 ATTATTATTATTATC
*
63969991 --TATTATTATTATT
1 ATTATTATTATTATC
63970004 ATTATTATTATTATAC
1 ATTATTATTATTAT-C
63970020 ATT-TTATTA
1 ATTATTATTA
63970029 CAAATTGTAC
Statistics
Matches: 79, Mismatches: 13, Indels: 27
0.66 0.11 0.23
Matches are distributed among these distances:
12 8 0.10
13 2 0.03
14 1 0.01
15 26 0.33
16 12 0.15
17 9 0.11
18 7 0.09
19 11 0.14
20 3 0.04
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (15 bp):
ATTATTATTATTATC
Found at i:63969997 original size:3 final size:3
Alignment explanation
Indices: 63969991--63970017 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
63969981 TTCTGATTTC
63969991 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
63970018 ACATTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:63970204 original size:7 final size:7
Alignment explanation
Indices: 63970192--63970220 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
63970182 GTCTTTGCTA
63970192 TTTTATT
1 TTTTATT
63970199 TTTTATT
1 TTTTATT
63970206 TTTTATT
1 TTTTATT
63970213 TTTT-TT
1 TTTTATT
63970219 TT
1 TT
63970221 ACATTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.18
7 18 0.82
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (7 bp):
TTTTATT
Found at i:63971282 original size:9 final size:9
Alignment explanation
Indices: 63971268--63971298 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
63971258 GAGATCTATA
63971268 AAACAGAGG
1 AAACAGAGG
63971277 AAACAGAGG
1 AAACAGAGG
*
63971286 AAACAGAGT
1 AAACAGAGG
63971295 AAAC
1 AAAC
63971299 GGAGTAAGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.58, C:0.13, G:0.26, T:0.03
Consensus pattern (9 bp):
AAACAGAGG
Found at i:63971800 original size:37 final size:37
Alignment explanation
Indices: 63971741--63971847 Score: 187
Period size: 37 Copynumber: 2.9 Consensus size: 37
63971731 AGCTCAGACG
* *
63971741 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
63971778 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
63971815 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
63971848 AAATATATTT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:63972064 original size:47 final size:46
Alignment explanation
Indices: 63972012--63972197 Score: 246
Period size: 47 Copynumber: 4.0 Consensus size: 46
63972002 TTTCACACTA
* * * *
63972012 GCCATTCAGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTC-GCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
63972059 GCCATTCGTCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCG-CCTTATCACATATATGCATGTTCACATTCATCACATTG
63972106 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTC-GCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
63972153 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTC-GCCTTATCACATATATGCATGTTCACATTCATCACAT
63972198 AAAATCCTAA
Statistics
Matches: 125, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
46 1 0.01
47 123 0.98
48 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (46 bp):
GCCATTCGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:63972076 original size:25 final size:25
Alignment explanation
Indices: 63972048--63972123 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
63972038 ATGTTCATAT
63972048 TCACCACATTGGCCATTCGTCCTTA
1 TCACCACATTGGCCATTCGTCCTTA
* *
63972073 TCA-CACATAT-G-CATGC-TCACAT-
1 TCACCACAT-TGGCCATTCGTC-CTTA
* *
63972095 TCATCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGTCCTTA
63972120 TCAC
1 TCAC
63972124 ATATATGCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 6 0.16
23 12 0.32
24 12 0.32
25 8 0.21
ACGTcount: A:0.24, C:0.34, G:0.12, T:0.30
Consensus pattern (25 bp):
TCACCACATTGGCCATTCGTCCTTA
Found at i:63972124 original size:22 final size:22
Alignment explanation
Indices: 63972097--63972168 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
63972087 GCTCACATTC
63972097 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
63972119 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
63972143 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
63972166 ATC
1 ATC
63972169 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:63975715 original size:5 final size:5
Alignment explanation
Indices: 63975705--63975734 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
63975695 TGTACTGACG
63975705 TGTTT TGTTT TGTTT TGTTT TGTTT TGTTT
1 TGTTT TGTTT TGTTT TGTTT TGTTT TGTTT
63975735 ATGATTACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80
Consensus pattern (5 bp):
TGTTT
Found at i:63979882 original size:24 final size:24
Alignment explanation
Indices: 63979846--63979904 Score: 84
Period size: 24 Copynumber: 2.4 Consensus size: 24
63979836 TTACTCTTTT
*
63979846 AAAAAAAATAAAAAGAAAAG-AAG
1 AAAAAAAAAAAAAAGAAAAGAAAG
63979869 AAAAAAAACAAAAAAGAAAAGAAAAG
1 AAAAAAAA-AAAAAAGAAAAG-AAAG
63979895 AAAAAAAAAA
1 AAAAAAAAAA
63979905 GAGGCTAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 8 0.25
24 11 0.34
25 2 0.06
26 11 0.34
ACGTcount: A:0.86, C:0.02, G:0.10, T:0.02
Consensus pattern (24 bp):
AAAAAAAAAAAAAAGAAAAGAAAG
Found at i:63980407 original size:49 final size:48
Alignment explanation
Indices: 63980340--63980440 Score: 157
Period size: 49 Copynumber: 2.1 Consensus size: 48
63980330 AAGTTTGCTA
* * *
63980340 TCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATCAATTTCTT
1 TCTTTGATTAACTTATTCGTCTCGAGCTATGCTCTCAATCAATTTCCT
*
63980388 TCTTTGTATTAACTTATTCGTCTCGAGTTATGCTCTCAATCAATTTCCT
1 TCTTTG-ATTAACTTATTCGTCTCGAGCTATGCTCTCAATCAATTTCCT
63980437 TCTT
1 TCTT
63980441 GTCCATTATT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
48 6 0.12
49 42 0.88
ACGTcount: A:0.20, C:0.21, G:0.10, T:0.50
Consensus pattern (48 bp):
TCTTTGATTAACTTATTCGTCTCGAGCTATGCTCTCAATCAATTTCCT
Found at i:63981301 original size:181 final size:181
Alignment explanation
Indices: 63981019--63981602 Score: 839
Period size: 181 Copynumber: 3.2 Consensus size: 181
63981009 TGAAGCCACT
* * * * * *
63981019 AAACCTTATCTTCTTGAAATAGCAATAGAGTAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * * *
63981084 TAGTGGAGCAAACTGGAA-ATCA-CGAATCACATTTCCCTAAAGTTGCAGTGGAATAGATTGAAG
66 TAGTGGAGCAGA-TTGAAGAT-AGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAG
*
63981147 CTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATAGC
129 CTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
* * *
63981200 AAACCTTATCTCCCTGAAATAACAGTGGAGTAGGTTGAAGTTAAAGTCTAATCTCCCTGAAGTTA
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * * * * *
63981265 CAATGGAGCAGATTGAAGATAGCAAATCTGATTTCCCTAAAGTTGTAGTGAAACAGATTGAAGCT
66 TAGTGGAGCAGATTGAAGATAGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT
* * *
63981330 ATAAATAAATAGATCTTATCTCTCTGAAGTTGCAATAGAGCAGATCATAGA
131 ATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
* *
63981381 AAACCTTATCTCCCTGAAATAACAGTGGAGCAAGTTTAAGTTAAAGTCTTATCTCCCTGAAGTTG
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * * *
63981446 TAGTGGAGTAGACTGAAGATGGCGAATCTCATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCT
66 TAGTGGAGCAGATTGAAGATAGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT
*
63981511 ATAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAGC
131 ATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
* **
63981562 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGT
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGT
63981603 CACAAATCCT
Statistics
Matches: 356, Mismatches: 45, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
180 5 0.01
181 351 0.99
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (181 bp):
AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
TAGTGGAGCAGATTGAAGATAGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT
ATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
Found at i:63983522 original size:6 final size:7
Alignment explanation
Indices: 63983507--63983531 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
63983497 GTCTTTGCTA
63983507 TTTTATT
1 TTTTATT
63983514 TTTTATT
1 TTTTATT
63983521 TTTTATT
1 TTTTATT
63983528 TTTT
1 TTTT
63983532 TTACATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:63983953 original size:28 final size:28
Alignment explanation
Indices: 63983922--63983977 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
63983912 TTCATAAAAG
*
63983922 AAGAATTTTTTAGGCAATGTTCTGCATT
1 AAGAATTTTTTAGGCAATGTTCGGCATT
63983950 AAGAATTTTTTAGGCAATGTTCGGCATT
1 AAGAATTTTTTAGGCAATGTTCGGCATT
63983978 TGTGTAACGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.41
Consensus pattern (28 bp):
AAGAATTTTTTAGGCAATGTTCGGCATT
Found at i:63984255 original size:22 final size:22
Alignment explanation
Indices: 63984230--63984271 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
63984220 CCCATCTGGG
* *
63984230 AGGGGCAACACGCTCGTGCGGA
1 AGGGGCAACACACCCGTGCGGA
63984252 AGGGGCAACACACCCGTGCG
1 AGGGGCAACACACCCGTGCG
63984272 AGCATTCCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.31, G:0.38, T:0.07
Consensus pattern (22 bp):
AGGGGCAACACACCCGTGCGGA
Found at i:63985435 original size:46 final size:47
Alignment explanation
Indices: 63985364--63985626 Score: 217
Period size: 46 Copynumber: 5.6 Consensus size: 47
63985354 GGTAAGGTGT
*
63985364 CGATGCCATGTCCTAGACACGGTCTTACACTGCTCAT-ATCTC-AAGC
1 CGATGCCATGTCCTAGACA-TGTCTTACACTGCTCATCATCTCGAAGC
* *
63985410 CGATGCCATATCCTAGACATCGTCTTACACTGACT-ATCATCTCGTAGC
1 CGATGCCATGTCCTAGACAT-GTCTTACACTG-CTCATCATCTCGAAGC
* * *
63985458 CGATG-CATGTCGC-AGACATGTCTTACACTGGCTTA-CGTCTCGAGGC
1 CGATGCCATGTC-CTAGACATGTCTTACACT-GCTCATCATCTCGAAGC
* * *
63985504 CGATG-CATGTCCCAGACATGTCTTACACTAGC-CCTCGTCTC-AATGC
1 CGATGCCATGTCCTAGACATGTCTTACACT-GCTCATCATCTCGAA-GC
* * **
63985550 CGATGCGATGTCCTAGACATGGTCTTACACTGGCTC-TCATAAT-GTGGC
1 CGATGCCATGTCCTAGACAT-GTCTTACACT-GCTCATCAT-CTCGAAGC
* *
63985598 CGATG-CATGTCCCAAACATGTCTTACACT
1 CGATGCCATGTCCTAGACATGTCTTACACT
63985627 AGCGCACACA
Statistics
Matches: 181, Mismatches: 21, Indels: 30
0.78 0.09 0.13
Matches are distributed among these distances:
45 2 0.01
46 103 0.57
47 43 0.24
48 31 0.17
49 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCTAGACATGTCTTACACTGCTCATCATCTCGAAGC
Found at i:63985580 original size:94 final size:93
Alignment explanation
Indices: 63985364--63985629 Score: 269
Period size: 94 Copynumber: 2.8 Consensus size: 93
63985354 GGTAAGGTGT
* * * * * *
63985364 CGATGCCATGTCCTAGACACGGTCTTACACT-GCTCATATCTC-AAGCCGATGCCATATCCTAGA
1 CGATG-CATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATG-CATGTCCCAGA
* *
63985427 CATCGTCTTACACT-GACTATCATCTCGTAGC
64 CAT-GTCTTACACTAG-CCATCATCTCATAGC
*
63985458 CGATGCATGTCGC-AGACAT-GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCCAGAC
1 CGATGCATGTC-CTAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAGAC
* *
63985521 ATGTCTTACACTAGCCCTCGTCTCA-ATGC
65 ATGTCTTACACTAGCCATCATCTCATA-GC
* * *
63985550 CGATGCGATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCCAA
1 CGATGC-ATGTCCTAGACATGGTCTTACACTGGCT-TACAT-CTCGAGGCCGATGCATGTCCCAG
63985613 ACATGTCTTACACTAGC
63 ACATGTCTTACACTAGC
63985630 GCACACATGA
Statistics
Matches: 147, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
91 1 0.01
92 36 0.24
93 43 0.29
94 65 0.44
95 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (93 bp):
CGATGCATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCCATCATCTCATAGC
Found at i:63988975 original size:40 final size:40
Alignment explanation
Indices: 63988872--63989042 Score: 258
Period size: 40 Copynumber: 4.3 Consensus size: 40
63988862 GATGATAACT
* *
63988872 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
63988912 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
63988951 AGGCTGAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT-C
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-ATCC
63988991 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
63989031 GGGCTGAGTCCC
1 GGGCTAAGTCCC
63989043 AACGATGAGG
Statistics
Matches: 120, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
39 35 0.29
40 83 0.69
41 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:63996378 original size:94 final size:92
Alignment explanation
Indices: 63996220--63996393 Score: 260
Period size: 94 Copynumber: 1.9 Consensus size: 92
63996210 TCATCTCGTA
* * *
63996220 GTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATATTGAGGCTGATGCATGTCCCAGAC
1 GTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATAATGAGGCTAATGCACGTCCCAGAC
*
63996285 ATGTCTTACACTAGCCCTCGTCTCAAT
66 ATATCTTACACTAGCCCTCGTCTCAAT
* *
63996312 GTCGATGCGATGTCCTAGACATGGTCTTACACTGGCTCT-CATAATGTGGCTAATGCACGTCCCA
1 GTCGATGC-ATGTCCAAGACAT-GTCTTACACTGGCT-TACATAATGAGGCTAATGCACGTCCCA
63996376 GACATATCTTACACTAGC
63 GACATATCTTACACTAGC
63996394 TCACACACGA
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
92 8 0.11
93 12 0.16
94 52 0.71
95 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (92 bp):
GTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATAATGAGGCTAATGCACGTCCCAGAC
ATATCTTACACTAGCCCTCGTCTCAAT
Found at i:63999138 original size:24 final size:25
Alignment explanation
Indices: 63999110--63999156 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
63999100 TAATGTTCAT
*
63999110 TTAACCGAATTGACC-AAATTAAAA
1 TTAACCGAATTAACCAAAATTAAAA
*
63999134 TTAACTGAATTAACCAAAATTAA
1 TTAACCGAATTAACCAAAATTAA
63999157 CCAAATTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.28
Consensus pattern (25 bp):
TTAACCGAATTAACCAAAATTAAAA
Found at i:64000127 original size:5 final size:5
Alignment explanation
Indices: 64000117--64000144 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
64000107 CTGTGTGTTC
64000117 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
64000145 CAAAAATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:64004481 original size:5 final size:5
Alignment explanation
Indices: 64004471--64004503 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
64004461 ATGTGTGTTC
64004471 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
64004504 CACAATATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:64006692 original size:23 final size:22
Alignment explanation
Indices: 64006641--64006688 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
64006631 TAAAGTATTA
*
64006641 TAAATTTATATGTATTTTTTTG
1 TAAATTTATATGTATTTTTGTG
*
64006663 TAAATTTATAATTTA-TTTTGTG
1 TAAATTTAT-ATGTATTTTTGTG
64006685 TAAA
1 TAAA
64006689 ATTTGACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58
Consensus pattern (22 bp):
TAAATTTATATGTATTTTTGTG
Found at i:64010457 original size:31 final size:31
Alignment explanation
Indices: 64010419--64010486 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
64010409 CTTAATACTC
* *
64010419 TAGTGACTTAAAT-AAAATATTTTGAATAGTT
1 TAGTGACTTAAATGAAAA-ATTTCGAATAATT
*
64010450 TAGTGACTTAAATGAAAACTTTCGAATAATT
1 TAGTGACTTAAATGAAAAATTTCGAATAATT
64010481 TAGTGA
1 TAGTGA
64010487 TCAAATTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 29 0.88
32 4 0.12
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (31 bp):
TAGTGACTTAAATGAAAAATTTCGAATAATT
Found at i:64012400 original size:17 final size:17
Alignment explanation
Indices: 64012378--64012423 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
64012368 GCACGATTCA
64012378 ATTTTTTATATTAAAAT
1 ATTTTTTATATTAAAAT
*
64012395 ATTTTTTA-AATAAAAT
1 ATTTTTTATATTAAAAT
*
64012411 ATTATTTTTTATT
1 ATT-TTTTATATT
64012424 TTCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 10 0.42
17 12 0.50
18 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTTTATATTAAAAT
Found at i:64012601 original size:23 final size:24
Alignment explanation
Indices: 64012574--64012618 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
64012564 AAAATCAAAT
*
64012574 GAGC-ACATACACAAAATTTAGCA
1 GAGCAACAGACACAAAATTTAGCA
64012597 GAGCAACAGACACAAAATTTAG
1 GAGCAACAGACACAAAATTTAG
64012619 TTGAACGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.49, C:0.20, G:0.16, T:0.16
Consensus pattern (24 bp):
GAGCAACAGACACAAAATTTAGCA
Found at i:64013152 original size:140 final size:135
Alignment explanation
Indices: 64012900--64013788 Score: 910
Period size: 131 Copynumber: 6.6 Consensus size: 135
64012890 CAAAACAGTG
* * * * **
64012900 CTAAGACGACAGTTATGGGGCAACACTTTTCTAAGTGTTGCGATAGACTGGTCAACATACATTTT
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCGAT-GACT-G--AAC-TACGCTTT
* * * *
64012965 CGGCAACTTTTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGCT
61 CGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCT
*
64013030 TTGTCTAGTC
126 TTGTGTAGTC
* * * *
64013040 CTAAGACGACA-TTTATGAGGCAACACTTTTCTAAGTGTTGCGATAGACTGGCCAACATACACTT
1 CTAAGACGACACTTT-TGGGGCGACACTTTCCTAAGTGTTGCGAT-GACT-G--AAC-TACGCTT
* * * * *
64013104 TCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAACGCTTAAATAAGAGTTGG-
60 TCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC
64013168 TGTTGTGTAGTC
125 T-TTGTGTAGTC
* *
64013180 CTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTT--G--GACT-ATACTACGCTTTCGCC
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCGATGACTGA-ACTACGCTTTCGGC
* * * *
64013240 AACTATTTGTATAAGGGTTGCGATAGGTATGCCTACGGCAAAGCTTGAATAAGAGTTGGCTTTTG
65 AACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC-TTTG
64013305 TGTAGTC
129 TGTAGTC
* * * * *
64013312 ATAA-ATGACACTTTTGTGGCGACACTTTCCTAAGTGTTG-G--GA-TAAACTACACTTT-GGCA
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCGATGACTGAACTACGCTTTCGGCA
* * * *
64013371 ACTCTTTGTATAAGGGTAGCGATATGTATGCCTACGGCAACGCTTGCATAAGAGTTGGAGTTTGT
66 ACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGG-CTTTGT
64013436 GTAGTC
130 GTAGTC
* * * *
64013442 CTAGGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGC-AT-A--G-ACTACGCTTTCGTCA
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCGATGACTGAACTACGCTTTCGGCA
* * *
64013502 ACTCTTTATATAAGGGTTAG-GATATGTATGCCTAAGGCAATGCTTGAATAAGAGTTGGTTTTTT
66 ACTCTTTGTATAAGGGTT-GCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGG--CTTT
64013566 GTGTAGTC
128 GTGTAGTC
* * *
64013574 CTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGCTGCGAT-A---AACTGCGCTTTCGGCA
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCGATGACTGAACTACGCTTTCGGCA
**
64013635 ACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAGCAAGAGTTGGCTTTTGT
66 ACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC-TTTGT
*
64013700 CTAGTC
130 GTAGTC
* * *
64013706 CTAAGACTACAGTTTTGGGGCGACACTTTCCTAAGTGTT-CAGATAGACCTGTCAACATATGCTT
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGC-GAT-GA-CTG--AAC-TACGCTT
64013770 T-GGCCAACTCTTTGTATAA
60 TCGG-CAACTCTTTGTATAA
64013789 AGGTGTAACA
Statistics
Matches: 655, Mismatches: 63, Indels: 61
0.84 0.08 0.08
Matches are distributed among these distances:
130 78 0.12
131 191 0.29
132 119 0.18
133 69 0.11
134 1 0.00
135 4 0.01
138 1 0.00
139 3 0.00
140 165 0.25
141 24 0.04
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (135 bp):
CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCGATGACTGAACTACGCTTTCGGCA
ACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTGTG
TAGTC
Found at i:64013498 original size:261 final size:263
Alignment explanation
Indices: 64012962--64013744 Score: 986
Period size: 261 Copynumber: 2.9 Consensus size: 263
64012952 CAACATACAT
* * * * * *
64012962 TTTCGGCAACTTTTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTG
1 TTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAAAGCTTGAATAAGAGTTG
* * * *
64013027 GC-TTTGTCTAGTCCTAAGACGACA-TTTATGAGGCAACACTTTTCTAAGTGTTGCGATAGACTG
66 GCTTTTGTGTAGTCCTAAGACGACACTTT-TGTGGCGACACTTTCCTAAGTGTTG-G---GA-T-
* * * * *
64013090 GCCAACATACACTTTCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAACGCTT
124 --AAAC-TACACTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTT
* * *
64013155 AAATAAGAGTTGGTG-TTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTT
186 -GATAAGAGTTGGAGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTT
* *
64013219 GGACTATACTACGC
250 GCACTAGACTACGC
* *
64013233 TTTCGCCAACTATTTGTATAAGGGTTGCGATAGGTATGCCTACGGCAAAGCTTGAATAAGAGTTG
1 TTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAAAGCTTGAATAAGAGTTG
* *
64013298 GCTTTTGTGTAGTCATAA-ATGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTAC
66 GCTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTAC
* *
64013362 ACTTT-GGCAACTCTTTGTATAAGGGTAGCGATATGTATGCCTACGGCAACGCTTGCATAAGAGT
131 ACTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTG-ATAAGAGT
* * *
64013426 TGGAGTTTGTGTAGTCCTAGGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGCA-TAGACT
195 TGGAGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCACTAGACT
64013490 ACGC
260 ACGC
* * * *
64013494 TTTCGTCAACTCTTTATATAAGGGTTAG-GATATGTATGCCTAAGGCAATGCTTGAATAAGAGTT
1 TTTCGCCAACTATTTGTATAAGGGTT-GCGATATGTATGCCTAAGGCAAAGCTTGAATAAGAGTT
* * *
64013558 GGTTTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGCTGCGATAAACT
65 GG-CTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACT
* * *
64013623 GCGCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAGCAAGA
129 ACACTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGA-TAAGA
** * * *
64013688 GTTGGCTTTTGTCTAGTCCTAAGACTACAGTTTTGGGGCGACACTTTCCTAAGTGTT
193 GTTGGAGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTT
64013745 CAGATAGACC
Statistics
Matches: 450, Mismatches: 53, Indels: 25
0.85 0.10 0.05
Matches are distributed among these distances:
261 122 0.27
262 71 0.16
263 50 0.11
264 101 0.22
266 1 0.00
267 2 0.00
270 1 0.00
271 86 0.19
272 16 0.04
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (263 bp):
TTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAAAGCTTGAATAAGAGTTG
GCTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTAC
ACTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGATAAGAGTT
GGAGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCACTAGACTA
CGC
Found at i:64014106 original size:7 final size:7
Alignment explanation
Indices: 64014058--64014134 Score: 64
Period size: 7 Copynumber: 10.4 Consensus size: 7
64014048 GGTGTAAGGT
64014058 TTTAGGG
1 TTTAGGG
* *
64014065 TTTTTGTG
1 -TTTAGGG
64014073 TTTATGGG
1 TTTA-GGG
*
64014081 TTTGGGG
1 TTTAGGG
**
64014088 TTTAAGAT
1 TTT-AGGG
64014096 TTTAGGG
1 TTTAGGG
*
64014103 TTTAGAG
1 TTTAGGG
64014110 TTTAGGG
1 TTTAGGG
64014117 TTTAGGG
1 TTTAGGG
64014124 TTTAAGGG
1 TTT-AGGG
64014132 TTT
1 TTT
64014135 TTTTAACATA
Statistics
Matches: 54, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
7 33 0.61
8 21 0.39
ACGTcount: A:0.16, C:0.00, G:0.35, T:0.49
Consensus pattern (7 bp):
TTTAGGG
Found at i:64014758 original size:8 final size:8
Alignment explanation
Indices: 64014708--64014758 Score: 50
Period size: 9 Copynumber: 5.9 Consensus size: 8
64014698 TTTATATGTT
64014708 AATTTAAA
1 AATTTAAA
64014716 AATTATAAA
1 AATT-TAAA
64014725 AATCTTCAAAA
1 AAT-TT--AAA
64014736 ATATTTAAA
1 A-ATTTAAA
64014745 AA-TTAAA
1 AATTTAAA
64014752 AATTTAA
1 AATTTAA
64014759 TATTTTAATC
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
7 7 0.19
8 9 0.24
9 12 0.32
10 1 0.03
11 6 0.16
12 2 0.05
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (8 bp):
AATTTAAA
Found at i:64014829 original size:21 final size:21
Alignment explanation
Indices: 64014797--64014846 Score: 55
Period size: 23 Copynumber: 2.3 Consensus size: 21
64014787 TTCAATATTC
*
64014797 AAAAAATTTATAAATAAAAATAG
1 AAAAAATATAT-AATAAAAAT-G
**
64014820 AAAAAATATATGTTAAAAATG
1 AAAAAATATATAATAAAAATG
64014841 AAAAAA
1 AAAAAA
64014847 AATTAAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 7 0.29
22 7 0.29
23 10 0.42
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (21 bp):
AAAAAATATATAATAAAAATG
Found at i:64015540 original size:35 final size:35
Alignment explanation
Indices: 64015407--64015527 Score: 215
Period size: 35 Copynumber: 3.5 Consensus size: 35
64015397 GCAAACCTAT
*
64015407 TGCATCTGCCGTCCACTGCCTGCCCCAGCCATCGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
*
64015442 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACGGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
*
64015477 TGCATCTGCCGTCCATTGCCTGCCCCAGCCACCGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
64015512 TGCATCTGCCGTCCAC
1 TGCATCTGCCGTCCAC
64015528 CACCTGCTCC
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 81 1.00
ACGTcount: A:0.12, C:0.45, G:0.23, T:0.20
Consensus pattern (35 bp):
TGCATCTGCCGTCCACTGCCTGCCCCAGCCACCGG
Done.