Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 195 of 343
Found at i:64718915 original size:17 final size:18
Alignment explanation
Indices: 64718895--64718928 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64718885 AAAATGTAAA
64718895 TGAAAAGC-TAATGTTTT
1 TGAAAAGCTTAATGTTTT
*
64718912 TGAAAATCTTAATGTTT
1 TGAAAAGCTTAATGTTT
64718929 GAAATTATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (18 bp):
TGAAAAGCTTAATGTTTT
Found at i:64720954 original size:29 final size:28
Alignment explanation
Indices: 64720917--64721178 Score: 193
Period size: 29 Copynumber: 9.3 Consensus size: 28
64720907 AACAAAGTTT
* *
64720917 GCCAC-AAGGCATTCATTTAACTGATATA
1 GCCACAAAGGCATTC-TTTAACAGAGATA
* *
64720945 GCCACAAAGGTACGTT-TTTAACAGAAATA
1 GCCACAAAGG--CATTCTTTAACAGAGATA
*
64720974 GCCACAAAGGCATCCTTTTAACAGAGATA
1 GCCACAAAGGCATTC-TTTAACAGAGATA
* *
64721003 GCCACAAAGGC-TTCTTTATAGTAGAGATC
1 GCCACAAAGGCATTCTTTA-A-CAGAGATA
*
64721032 GCCACAAAGGC-TTCCATTTAACAAAGATA
1 GCCACAAAGGCATT-C-TTTAACAGAGATA
*
64721061 GCCACAAAGGCA-TCTTT-TCAGAGATA
1 GCCACAAAGGCATTCTTTAACAGAGATA
* *
64721087 GCCATAAAGGC-TTCCTTATAACAAAGATA
1 GCCACAAAGGCATT-CTT-TAACAGAGATA
* ** * *
64721116 ACCACAAAGGTGTCCTTT--CAGAGAGA
1 GCCACAAAGGCATTCTTTAACAGAGATA
*
64721142 GCCACAAAGGC-TTCCTTATAATAGAGATA
1 GCCACAAAGGCATT-CTT-TAACAGAGATA
64721171 GCCACAAA
1 GCCACAAA
64721179 TGCTCACTTA
Statistics
Matches: 187, Mismatches: 28, Indels: 37
0.74 0.11 0.15
Matches are distributed among these distances:
25 1 0.01
26 36 0.19
27 13 0.07
28 11 0.06
29 116 0.62
30 3 0.02
31 7 0.04
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (28 bp):
GCCACAAAGGCATTCTTTAACAGAGATA
Found at i:64721109 original size:55 final size:55
Alignment explanation
Indices: 64720966--64721178 Score: 248
Period size: 55 Copynumber: 3.8 Consensus size: 55
64720956 ACGTTTTTAA
* * * * *
64720966 CAGAAATAGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAAGGCTTCTTTAT
1 CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCTTT-T
* *
64721022 AGTAGAGATCGCCACAAAGGCTTCCATT-TAACAAAGATAGCCACAAAGGCATCTTTT
1 --CAGAGATAGCCACAAAGGCTTCC-TTATAACAAAGATAGCCACAAAGGCATCTTTT
* * ** *
64721079 CAGAGATAGCCATAAAGGCTTCCTTATAACAAAGATAACCACAAAGGTGTCCTTT
1 CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCTTTT
* * *
64721134 CAGAGAGAGCCACAAAGGCTTCCTTATAATAGAGATAGCCACAAA
1 CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAA
64721179 TGCTCACTTA
Statistics
Matches: 135, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
54 2 0.01
55 85 0.63
57 1 0.01
58 45 0.33
59 2 0.01
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.22
Consensus pattern (55 bp):
CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCTTTT
Found at i:64721190 original size:84 final size:85
Alignment explanation
Indices: 64720973--64721178 Score: 226
Period size: 84 Copynumber: 2.4 Consensus size: 85
64720963 TAACAGAAAT
* * ** * **
64720973 AGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAAGGCTTCTTTATAGTAGAGATCGCCACA
1 AGCCACAAAGGCATCC-TTTAATAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAACCACA
*
64721038 AAGGCTTCCATTTAACAAAGAT
65 AAGGCTTCCATTT-ACAAAGAG
*
64721060 AGCCACAAAGGCAT-CTTT--TCAGAGATAGCCATAAAGGCTTCCTTATAACAAAGATAACCACA
1 AGCCACAAAGGCATCCTTTAAT-AGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAACCACA
*
64721122 AAGG-TGTCC-TTT-CAGAGAG
65 AAGGCT-TCCATTTACAAAGAG
*
64721141 AGCCACAAAGGCTTCCTTATAATAGAGATAGCCACAAA
1 AGCCACAAAGGCATCCTT-TAATAGAGATAGCCACAAA
64721179 TGCTCACTTA
Statistics
Matches: 101, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
81 18 0.18
82 3 0.03
83 5 0.05
84 56 0.55
85 4 0.04
86 1 0.01
87 14 0.14
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.22
Consensus pattern (85 bp):
AGCCACAAAGGCATCCTTTAATAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAACCACAA
AGGCTTCCATTTACAAAGAG
Found at i:64725769 original size:65 final size:65
Alignment explanation
Indices: 64725689--64725818 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
64725679 TCCTTATATC
*
64725689 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCGTTACACTTCATACT
1 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
64725754 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
1 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
64725819 TTGAATATAT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.36, C:0.20, G:0.02, T:0.42
Consensus pattern (65 bp):
CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
Found at i:64727437 original size:26 final size:26
Alignment explanation
Indices: 64727408--64727467 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
64727398 TTCCTTTGAA
* * *
64727408 TCATTCGATATTTCGCACACTAAGTG
1 TCATTCAATATCTCACACACTAAGTG
64727434 TCATTCTCAATATCTCACACACTAAGTG
1 TCA-T-TCAATATCTCACACACTAAGTG
*
64727462 CCATTC
1 TCATTC
64727468 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (26 bp):
TCATTCAATATCTCACACACTAAGTG
Found at i:64727483 original size:28 final size:28
Alignment explanation
Indices: 64727415--64727493 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
64727405 GAATCATTCG
*
64727415 ATATTTCGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
64727443 ATATCTCACACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
64727471 ATATTTCGTACACTGAGTGCCAT
1 ATATTTCGCACACTAAGTGCCAT
64727494 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:64731631 original size:11 final size:10
Alignment explanation
Indices: 64731599--64731654 Score: 62
Period size: 11 Copynumber: 5.6 Consensus size: 10
64731589 CATGAGATTT
64731599 TGATAT-ACA
1 TGATATGACA
*
64731608 TGATTTGACA
1 TGATATGACA
64731618 TGATATGCACA
1 TGATATG-ACA
*
64731629 TGATATG-TA
1 TGATATGACA
64731638 TGATATGCACA
1 TGATATG-ACA
64731649 TGATAT
1 TGATAT
64731655 ATTCATATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 13 0.33
10 9 0.23
11 17 0.44
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (10 bp):
TGATATGACA
Found at i:64731642 original size:20 final size:20
Alignment explanation
Indices: 64731617--64731654 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
64731607 ATGATTTGAC
64731617 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
64731637 ATGATATGCACATGATAT
1 ATGATATGCACATGATAT
64731655 ATTCATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:64731733 original size:25 final size:25
Alignment explanation
Indices: 64731700--64731769 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
64731690 GAGGAAGTGA
*
64731700 AAAAGGGCTTTTCCCCAGTTTACCG
1 AAAAGGGCTTTCCCCCAGTTTACCG
64731725 AAAAGGGCTTTCCCCCAGTTTACCG
1 AAAAGGGCTTTCCCCCAGTTTACCG
*
64731750 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTCCCCCAGTT
64731770 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTCCCCCAGTTTACCG
Found at i:64732022 original size:30 final size:31
Alignment explanation
Indices: 64731988--64732100 Score: 205
Period size: 30 Copynumber: 3.7 Consensus size: 31
64731978 CGCGTACAGT
64731988 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
64732018 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
64732048 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
64732079 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
64732101 TCGAGACTGA
Statistics
Matches: 82, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
30 46 0.56
31 36 0.44
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:64737898 original size:103 final size:103
Alignment explanation
Indices: 64737772--64737978 Score: 405
Period size: 103 Copynumber: 2.0 Consensus size: 103
64737762 AGGGGATCAC
64737772 ATAGTCATTCTGAGTGAGTCACACACAAATATAAATATCTCAAAATATAGAGTTCCTTTACTTGA
1 ATAGTCATTCTGAGTGAGTCACACACAAATATAAATATCTCAAAATATAGAGTTCCTTTACTTGA
*
64737837 TCTGTTTCTTTTACATGGGAATAGACTTATTAAGCTTT
66 TCTGTTTCTTTTACATGGGAATAGACTCATTAAGCTTT
64737875 ATAGTCATTCTGAGTGAGTCACACACAAATATAAATATCTCAAAATATAGAGTTCCTTTACTTGA
1 ATAGTCATTCTGAGTGAGTCACACACAAATATAAATATCTCAAAATATAGAGTTCCTTTACTTGA
64737940 TCTGTTTCTTTTACATGGGAATAGACTCATTAAGCTTT
66 TCTGTTTCTTTTACATGGGAATAGACTCATTAAGCTTT
64737978 A
1 A
64737979 ATTTCATATC
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 103 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (103 bp):
ATAGTCATTCTGAGTGAGTCACACACAAATATAAATATCTCAAAATATAGAGTTCCTTTACTTGA
TCTGTTTCTTTTACATGGGAATAGACTCATTAAGCTTT
Found at i:64744051 original size:28 final size:28
Alignment explanation
Indices: 64743988--64744138 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
64743978 ATATTAAGTC
*
64743988 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
64744015 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
64744043 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
64744071 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
64744099 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
64744128 CGCACACTTAG
1 CGCACACTTAG
64744139 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:64746178 original size:46 final size:46
Alignment explanation
Indices: 64746055--64746180 Score: 189
Period size: 46 Copynumber: 2.7 Consensus size: 46
64746045 TGTAACCCGC
* * * * * *
64746055 CCATAAGTGAACTTGGACTCAACTCAGCGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
64746101 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCCT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
64746147 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
64746181 AGATGCCCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:64751081 original size:41 final size:41
Alignment explanation
Indices: 64750997--64751143 Score: 178
Period size: 40 Copynumber: 3.6 Consensus size: 41
64750987 TTGAATGATG
* * *
64750997 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
64751037 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TTACTATAA
*
64751078 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
64751119 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64751144 AACGAGGAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
40 50 0.54
41 43 0.46
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:64751157 original size:40 final size:40
Alignment explanation
Indices: 64750998--64751162 Score: 122
Period size: 40 Copynumber: 4.1 Consensus size: 40
64750988 TGAATGATGT
** * * *
64750998 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTATAA
* ** *
64751038 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGAACGAG-TGACTATAA
* ** *
64751078 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
* *
64751119 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTATAA
64751159 CCGG
1 CCGG
64751163 TTAAATTCCG
Statistics
Matches: 105, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
39 1 0.01
40 63 0.60
41 41 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:64758966 original size:40 final size:40
Alignment explanation
Indices: 64758883--64759028 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
64758873 TTGAATGATG
* * * *
64758883 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
64758923 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64758963 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64759004 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64759029 AACGAGGAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 82 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64759042 original size:40 final size:40
Alignment explanation
Indices: 64758884--64759047 Score: 129
Period size: 40 Copynumber: 4.1 Consensus size: 40
64758874 TGAATGATGT
** * * *
64758884 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTATAA
* ** *
64758924 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGTGACTATAA
* ** *
64758963 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
* *
64759004 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTATAA
64759044 CCGG
1 CCGG
64759048 TTAAATTCCG
Statistics
Matches: 105, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
39 3 0.03
40 92 0.88
41 10 0.10
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:64759046 original size:80 final size:80
Alignment explanation
Indices: 64758883--64759061 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
64758873 TTGAATGATG
* *
64758883 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
** *
64758948 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* * * * *
64758963 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
64759026 TTGAACGAG-GAGCTATA
64 TTGAACGAGTGA-CTAAA
* *
64759043 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
64759062 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 16 0.19
80 60 0.72
81 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:64771206 original size:29 final size:29
Alignment explanation
Indices: 64771143--64771210 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
64771133 TAATCAACCA
64771143 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
64771172 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
64771201 CGCACACTTA
1 CGCACACTTA
64771211 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:64771322 original size:174 final size:174
Alignment explanation
Indices: 64771032--64771359 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
64771022 AACTCAAGGT
* * *
64771032 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
64771097 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
64771162 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
64771206 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
64771271 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
64771336 ACTTTAAACTCACACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
64771360 TGTACAATTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:64771353 original size:29 final size:30
Alignment explanation
Indices: 64771319--64771390 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
64771309 ATCAACCACG
*
64771319 CACACTTAGTGCCATGTAC-TTTAAACTCA
1 CACACTTAGTGCCATGTACATTTAAACCCA
*
64771348 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCA
64771377 CACACTTAGTGCCA
1 CACACTTAGTGCCA
64771391 ATCTCATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 30 0.81
30 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCA
Found at i:64776624 original size:42 final size:42
Alignment explanation
Indices: 64776566--64776693 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 42
64776556 TAGGGTTACT
** *
64776566 GAGATTATGTGTAAGACCATATCTGGGATATGGCATTGATAT
1 GAGATTACATGTAAGACCATATCTGGGATATGGCATTGATAC
* * *
64776608 GAGACTT-CATGTAAGACCATAGCT-GGACTATTGGCATCGTTAC
1 GAGA-TTACATGTAAGACCATATCTGGGA-TA-TGGCATTGATAC
* *
64776651 GAGATTACATGTAAGACCATATCTGAGATATGGCATTGTTAC
1 GAGATTACATGTAAGACCATATCTGGGATATGGCATTGATAC
64776693 G
1 G
64776694 GTACTGTGTG
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
41 3 0.04
42 34 0.47
43 33 0.46
44 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
GAGATTACATGTAAGACCATATCTGGGATATGGCATTGATAC
Found at i:64776662 original size:43 final size:41
Alignment explanation
Indices: 64776560--64776693 Score: 153
Period size: 43 Copynumber: 3.1 Consensus size: 41
64776550 TGACATTAGG
**
64776560 GTTACTGAGATTATGTGTAAGACCATATCTGGGATATGGCATT
1 GTTAC-GAGATTACATGTAAGACCATATCT-GGATATGGCATT
* * * *
64776603 GATATGAGACTT-CATGTAAGACCATAGCTGGACTATTGGCATC
1 GTTACGAGA-TTACATGTAAGACCATATCTGGA-TA-TGGCATT
64776646 GTTACGAGATTACATGTAAGACCATATCTGAGATATGGCATT
1 GTTACGAGATTACATGTAAGACCATATCTG-GATATGGCATT
64776688 GTTACG
1 GTTACG
64776694 GTACTGTGTG
Statistics
Matches: 76, Mismatches: 10, Indels: 11
0.78 0.10 0.11
Matches are distributed among these distances:
41 3 0.04
42 34 0.45
43 37 0.49
44 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (41 bp):
GTTACGAGATTACATGTAAGACCATATCTGGATATGGCATT
Found at i:64786412 original size:18 final size:18
Alignment explanation
Indices: 64786391--64786450 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 18
64786381 CAAAAGCATT
64786391 GTGAGGGTTAAAAGCAAA
1 GTGAGGGTTAAAAGCAAA
* *
64786409 GTGAGAGTTGCAAAAGCATA
1 GTGAGGGTT--AAAAGCAAA
* * *
64786429 G-AACGGATAAAAGCAAA
1 GTGAGGGTTAAAAGCAAA
64786446 GTGAG
1 GTGAG
64786451 TAAAATAAGA
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
17 9 0.30
18 9 0.30
19 3 0.10
20 9 0.30
ACGTcount: A:0.45, C:0.08, G:0.32, T:0.15
Consensus pattern (18 bp):
GTGAGGGTTAAAAGCAAA
Found at i:64787359 original size:26 final size:26
Alignment explanation
Indices: 64787323--64787373 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
64787313 TATTTGAGTG
64787323 TGTAGGGTGTCATTTTAGGTTAAAGT
1 TGTAGGGTGTCATTTTAGGTTAAAGT
64787349 TGTAGGGTGTCATTTTAGGTTAAAG
1 TGTAGGGTGTCATTTTAGGTTAAAG
64787374 AACACAAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.04, G:0.31, T:0.41
Consensus pattern (26 bp):
TGTAGGGTGTCATTTTAGGTTAAAGT
Found at i:64789507 original size:21 final size:21
Alignment explanation
Indices: 64789483--64789537 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
64789473 CTTATAAAAT
64789483 TTTATTATATATACATTTTAC
1 TTTATTATATATACATTTTAC
**
64789504 TTTA-TATATTATTTATTTTAC
1 TTTATTATA-TATACATTTTAC
*
64789525 TATATTTATATAT
1 TTTA-TTATATAT
64789538 GTAAATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 4 0.14
21 17 0.61
22 3 0.11
23 4 0.14
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTATTATATATACATTTTAC
Found at i:64789572 original size:41 final size:40
Alignment explanation
Indices: 64789432--64789572 Score: 110
Period size: 41 Copynumber: 3.4 Consensus size: 40
64789422 AAAAATAATG
*
64789432 TATATTATTTTTATTTATATATTATATTATTATATACGTTTCT
1 TATATTATTTTTATTTATATATTATATTATTATATA---TTAT
* * * *
64789475 TATA-AAATTTTA-TTATATATACATTTTACTTTATATATTAT
1 TATATTATTTTTATTTATATAT-TATATTA--TTATATATTAT
* *
64789516 T-TATT-TTACTATATTTATATATGTAAATTATTATATATTAT
1 TATATTATT--TTTATTTATATAT-TATATTATTATATATTAT
64789557 TATATTATTTTTATTT
1 TATATTATTTTTATTT
64789573 TTAACTATTT
Statistics
Matches: 76, Mismatches: 13, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
40 3 0.04
41 30 0.39
42 18 0.24
43 18 0.24
44 7 0.09
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (40 bp):
TATATTATTTTTATTTATATATTATATTATTATATATTAT
Found at i:64792758 original size:22 final size:22
Alignment explanation
Indices: 64792730--64792851 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
64792720 TTCCACATCC
64792730 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
64792752 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
64792776 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
64792799 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
64792823 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
64792846 ATCACA
1 ATCACA
64792852 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:64792765 original size:47 final size:47
Alignment explanation
Indices: 64792702--64793043 Score: 535
Period size: 47 Copynumber: 7.3 Consensus size: 47
64792692 CCCTTCGGGA
* * *
64792702 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
64792749 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
64792796 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64792843 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64792890 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64792937 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64792984 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
64793031 CTTATCACATATA
1 CTTATCACATATA
64793044 GATATACACT
Statistics
Matches: 276, Mismatches: 18, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 275 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:64792956 original size:141 final size:141
Alignment explanation
Indices: 64792723--64793061 Score: 599
Period size: 141 Copynumber: 2.4 Consensus size: 141
64792713 TATACACTTC
*
64792723 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
64792788 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
66 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
64792853 ATACACATGTT
131 ATACACATGTT
* *
64792864 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TGTTCACATTCATCACATTGG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCACATTGG
64792928 CCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
65 CCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
64792993 CATACACATGTT
130 CATACACATGTT
64793005 CACATTCATCACATTGGCCATTCGGCCTTATCACATATAGATATACACTTTCACATT
1 CACATTCATCACATTGGCCATTCGGCCTTATCAC--AT--ATATACACTTTCACATT
64793062 TATTCAAATA
Statistics
Matches: 187, Mismatches: 5, Indels: 8
0.94 0.03 0.04
Matches are distributed among these distances:
140 1 0.01
141 169 0.90
143 2 0.01
145 14 0.07
146 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (141 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
ATACACATGTT
Found at i:64794671 original size:55 final size:56
Alignment explanation
Indices: 64794507--64794681 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
64794497 TATTAGTTTA
64794507 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
64794563 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
64794619 TTGCCCATGCTTCTTATTTTATT-TTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
64794674 TTGCCCAT
1 TTGCCCAT
64794682 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
55 40 0.34
56 79 0.66
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:64795993 original size:40 final size:40
Alignment explanation
Indices: 64795948--64796185 Score: 287
Period size: 40 Copynumber: 5.9 Consensus size: 40
64795938 CGAATACACG
* * * * *
64795948 TCACCAGCATGATTGCTCTTTGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * * *
64795988 ACACCAGCACGAATGCTCTTCGGGGTTTTGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
64796028 TCACTAGCACGAATGCTCTTCAGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
64796068 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG--C-CCGGATACA
* *
64796111 TCACTAGCATGAATGCTCTCCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
64796151 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG
64796186 TTATAGTAAC
Statistics
Matches: 170, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
40 131 0.77
41 1 0.01
42 1 0.01
43 37 0.22
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:64796129 original size:83 final size:83
Alignment explanation
Indices: 64796020--64796183 Score: 292
Period size: 83 Copynumber: 2.0 Consensus size: 83
64796010 GGGTTTTGCA
* *
64796020 CGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGCCCGGATACATCACTAGCATGAATGCT
1 CGGATACATCACTAGCACGAATGCTCTCCAGAACTTAGCCCGGATACATCACTAGCATGAATGCT
64796085 CTTCGGGACTTAGCCCTC
66 CTTCGGGACTTAGCCCTC
* *
64796103 CGGATACATCACTAGCATGAATGCTCTCCGGAACTTAGCCCGGATACATCACTAGCATGAATGCT
1 CGGATACATCACTAGCACGAATGCTCTCCAGAACTTAGCCCGGATACATCACTAGCATGAATGCT
64796168 CTTCGGGACTTAGCCC
66 CTTCGGGACTTAGCCC
64796184 GGTTATAGTA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 77 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (83 bp):
CGGATACATCACTAGCACGAATGCTCTCCAGAACTTAGCCCGGATACATCACTAGCATGAATGCT
CTTCGGGACTTAGCCCTC
Found at i:64796276 original size:79 final size:81
Alignment explanation
Indices: 64796162--64796345 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
64796152 CACTAGCATG
* *
64796162 AATGCTCTTCGGGACTTAGCCCGG-TTATAGTAACTCGTACAAATGCCTTCGGGA-CTTAACCCG
1 AATGC-CTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
64796225 GATTTAGTAAC-TCGCACC
64 GATATAGTAACTTAGCA-C
**
64796243 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
64796306 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
64796322 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
64796346 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 23 0.26
81 5 0.06
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:64796345 original size:40 final size:40
Alignment explanation
Indices: 64795969--64796345 Score: 227
Period size: 40 Copynumber: 9.4 Consensus size: 40
64795959 ATTGCTCTTT
* *
64795969 GGGACCTAGCCCGGATATA--ACAC-CAGCACGAATGCTCTTC
1 GGGACTTAGCCCGGATATAGTA-ACTC-GCACAAATGC-CTTC
** * * * * *
64796009 GGGGTTTTGCACGGATATA-TCACTAGCACGAATGCTCTTC
1 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGC-CTTC
* * * * * **
64796049 AGAACTTAGCCCGGATACA-TCACTAGCATGAATGCTCTTC
1 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGC-CTTC
* * * ** *
64796089 GGGACTTAGCCCTCCGGATACA-TCACTAGCATGAATGCTCTCC
1 GGGACTTAG--C-CCGGATATAGTAACTCGCACAAATGC-CTTC
* * * * **
64796132 GGAACTTAGCCCGGATACA-TCACTAGCATGAATGCTCTTC
1 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGC-CTTC
* *
64796172 GGGACTTAGCCCGGTTATAGTAACTCGTACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
* * *
64796212 GGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTC
1 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
64796252 GGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTC
* * * *
64796291 -GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTC
1 GGGA-CTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTC
64796331 GGGACTTAGCCCGGA
1 GGGACTTAGCCCGGA
64796346 CATCATTCGA
Statistics
Matches: 284, Mismatches: 41, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.11
40 188 0.66
41 24 0.08
42 1 0.00
43 37 0.13
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
Found at i:64798682 original size:22 final size:22
Alignment explanation
Indices: 64798654--64798775 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
64798644 TTCCACATCC
64798654 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
64798676 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
64798700 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
64798723 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
64798747 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
64798770 ATCACA
1 ATCACA
64798776 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:64798689 original size:47 final size:47
Alignment explanation
Indices: 64798626--64799109 Score: 744
Period size: 47 Copynumber: 10.3 Consensus size: 47
64798616 CCCTTCGGGA
* * *
64798626 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
64798673 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
64798720 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64798767 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
64798814 CTTATCACACATACT-CATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA-TACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64798861 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64798908 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64798955 CTTATCACACATACT-GATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA-TACATGTTCACATTCATCACATTGGCCATTCGGC
*
64799002 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64799049 CTTATCACACATACACAT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
64799095 CTTATCACATATATA
1 CTTATCACATATATA
64799110 TATACACTTT
Statistics
Matches: 407, Mismatches: 25, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
46 44 0.11
47 363 0.89
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:64798880 original size:141 final size:141
Alignment explanation
Indices: 64798647--64799103 Score: 839
Period size: 141 Copynumber: 3.2 Consensus size: 141
64798637 TATACACTTC
* *
64798647 CACATCCATCACATTGGCCATTCGGCCTTATCACATATA-TACACT-TTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACT-CA-TGTTCACATTCATCACATTG
64798710 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
64 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
64798775 ACATACACATGTT
129 ACATACACATGTT
64798788 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACATTGGC
64798853 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
66 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
64798918 ATACACATGTT
131 ATACACATGTT
*
64798929 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACTGATGTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACATTGGC
*
64798994 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
66 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
64799059 ATACACAT-TT
131 ATACACATGTT
64799069 CACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CACATTCATCACATTGGCCATTCGGCCTTATCACA
64799104 TATATATATA
Statistics
Matches: 310, Mismatches: 4, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
140 38 0.12
141 271 0.87
142 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (141 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACATTGGC
CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
ATACACATGTT
Found at i:64800638 original size:56 final size:56
Alignment explanation
Indices: 64800571--64800690 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
64800561 TATTAGTTTA
64800571 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
64800627 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
64800683 TTGCCCAT
1 TTGCCCAT
64800691 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:64811518 original size:44 final size:44
Alignment explanation
Indices: 64811464--64812036 Score: 722
Period size: 44 Copynumber: 13.0 Consensus size: 44
64811454 GATAGCTAAA
* * *
64811464 TTGGCGTCTCTGTATTGTCAGAGAGCAAATCGAAAATAGCAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
*
64811508 TTGGCGTCTCTGTATTGACAGAAAGCAGATCGAAGAT-GACAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAG-CAGAT
* *
64811552 TTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* *
64811596 TTGGTGTCTCTGTGTTGACAGAGAGCAGATCGAAGAT-GACAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAG-CAGAT
* *
64811640 TTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* * * *
64811684 TTGGTGTCTCTGTGTTGACAGAGAGTAGATCAAAGATAGCAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* *
64811728 TTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATAGCAGTT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* * **
64811772 TTGGCATCTCTGTATTGACAAAGAGCAGATCGAAGATAATAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* * * *
64811816 TTTGCGTCTCTGTATTGATAGAGAGCATATCAAAGATAGCAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* **
64811860 TTGGCATCTCTGTATTGATGGAGAGCAGATCGAAGATAGCAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
*
64811904 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGTAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* * * *
64811948 TTGGCATCT-TAGTATTGACAAAGAGCAGAGT-GAAAATAACAGAT
1 TTGGCGTCTCT-GTATTGACAGAGAGCAGA-TCGAAGATAGCAGAT
* * * * ** *
64811992 TTTGCTTCTCTATGTTAGATGGGGAGCAGATCGAAGATAGCAGAT
1 TTGGCGTCTCTGTATT-GACAGAGAGCAGATCGAAGATAGCAGAT
64812037 CTAACATTTG
Statistics
Matches: 455, Mismatches: 65, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
43 2 0.00
44 431 0.95
45 22 0.05
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (44 bp):
TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
Found at i:64813938 original size:20 final size:20
Alignment explanation
Indices: 64813879--64813939 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
64813869 ATATATGTAA
*
64813879 ATTAT-TATATATTATTATATT
1 ATTATGTATA-ATTAATAT-TT
* *
64813900 ATTTTG-ATTATTAACTATTT
1 ATTATGTATAATTAA-TATTT
64813920 ATTATGTATAATTAATATTT
1 ATTATGTATAATTAATATTT
64813940 TTAAATTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (20 bp):
ATTATGTATAATTAATATTT
Found at i:64826605 original size:19 final size:19
Alignment explanation
Indices: 64826560--64826605 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
64826550 ACACAAGTAG
*
64826560 ACACACGAGCGTGTGTCTC
1 ACACACGGGCGTGTGTCTC
64826579 ACACACGGGCGTGTGTCTC
1 ACACACGGGCGTGTGTCTC
64826598 ACACACGG
1 ACACACGG
64826606 TCTGTTCCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.22, C:0.33, G:0.28, T:0.17
Consensus pattern (19 bp):
ACACACGGGCGTGTGTCTC
Found at i:64838937 original size:13 final size:13
Alignment explanation
Indices: 64838921--64838946 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64838911 ATTGGGGTGG
64838921 CAAATTGGCTATT
1 CAAATTGGCTATT
64838934 CAAATTGGCTATT
1 CAAATTGGCTATT
64838947 TTTGTCTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
CAAATTGGCTATT
Found at i:64839660 original size:20 final size:20
Alignment explanation
Indices: 64839635--64839672 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
64839625 CCTATACATG
*
64839635 GTAAAAATTTTCTAAGTTTT
1 GTAAAAATTTCCTAAGTTTT
64839655 GTAAAAATTTCCTAAGTT
1 GTAAAAATTTCCTAAGTT
64839673 CTTGGTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.45
Consensus pattern (20 bp):
GTAAAAATTTCCTAAGTTTT
Found at i:64842510 original size:22 final size:23
Alignment explanation
Indices: 64842468--64842510 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
64842458 AAAACTACCG
*
64842468 GTAAAAATGCAGACAAGTTGCTA
1 GTAAAAATGCAGACAAATTGCTA
*
64842491 GTAAAAATG-AGATAAATTGC
1 GTAAAAATGCAGACAAATTGC
64842511 CTAATCTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.47, C:0.09, G:0.21, T:0.23
Consensus pattern (23 bp):
GTAAAAATGCAGACAAATTGCTA
Found at i:64848519 original size:13 final size:13
Alignment explanation
Indices: 64848501--64848526 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64848491 ATGAATAATT
64848501 AAGGAAGAAAAAA
1 AAGGAAGAAAAAA
64848514 AAGGAAGAAAAAA
1 AAGGAAGAAAAAA
64848527 CTCTTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAGGAAGAAAAAA
Found at i:64853296 original size:15 final size:15
Alignment explanation
Indices: 64853257--64853315 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
64853247 TAAAGGTAAC
*
64853257 AAGAAACCCGA-ATA
1 AAGAAACCCAAGATA
* *
64853271 AAGAAATCCAAGATT
1 AAGAAACCCAAGATA
* *
64853286 GAGAAACCCAAAATA
1 AAGAAACCCAAGATA
64853301 AAGAAACCCAAGATA
1 AAGAAACCCAAGATA
64853316 CGATACTATG
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
14 9 0.26
15 26 0.74
ACGTcount: A:0.58, C:0.19, G:0.14, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAAGATA
Found at i:64853303 original size:30 final size:29
Alignment explanation
Indices: 64853258--64853314 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
64853248 AAAGGTAACA
* *
64853258 AGAAACCCGAATAAAGAAATCCAAGATTG
1 AGAAACCCAAATAAAGAAACCCAAGATTG
64853287 AGAAACCCAAAATAAAGAAACCCAAGAT
1 AGAAACCC-AAATAAAGAAACCCAAGAT
64853315 ACGATACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.56, C:0.19, G:0.14, T:0.11
Consensus pattern (29 bp):
AGAAACCCAAATAAAGAAACCCAAGATTG
Found at i:64855800 original size:46 final size:46
Alignment explanation
Indices: 64855733--64855907 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
64855723 ATGTAACCCG
* *
64855733 TCCATAAGCAAACTCGGACTCAACTCAAAGAGTTCGAACGTTCGCA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAACGTTCGCA
* * *
64855779 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GA--AC--GTTCGCA
*
64855829 T-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACGTTCGCA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAACGTTCGCA
*
64855872 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
64855908 GATGCTCAAA
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (46 bp):
TCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAACGTTCGCA
Found at i:64855859 original size:93 final size:93
Alignment explanation
Indices: 64855743--64855912 Score: 322
Period size: 93 Copynumber: 1.8 Consensus size: 93
64855733 TCCATAAGCA
64855743 AACTCGGACTCAACTCAAAGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAAAGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
64855808 GAGTTCAGATGCCTAGTTACATCTCACG
66 GAGTTCAGATGCCTAGTTACATCTCACG
*
64855836 AACTCGGACTCAACTCAACGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAAAGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
64855901 GAGTTCGGATGC
66 GAGTTCAGATGC
64855913 TCAAATATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAAAGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCAGATGCCTAGTTACATCTCACG
Found at i:64858649 original size:16 final size:16
Alignment explanation
Indices: 64858623--64858663 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
64858613 TGAATATTTC
64858623 TTCTTTA-TTCTTTAAT
1 TTCTTTATTTC-TTAAT
*
64858639 TTC-TTATTTCTTATT
1 TTCTTTATTTCTTAAT
64858654 TTCTTTATTT
1 TTCTTTATTT
64858664 TCTTGTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (16 bp):
TTCTTTATTTCTTAAT
Found at i:64869158 original size:27 final size:27
Alignment explanation
Indices: 64869124--64869301 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
64869114 GAAATTGTAC
64869124 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
64869151 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64869177 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
64869205 GGCACTAAGTGTGCGAGTTCGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
64869233 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64869260 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
64869287 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64869302 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:64869240 original size:82 final size:81
Alignment explanation
Indices: 64869125--64869280 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
64869115 AAATTGTACA
* * *
64869125 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
64869189 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
64869206 GCACTAAGTGTGCGAGTTCGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
64869271 TGCGAGTTGA
65 TGCGAATTGA
64869281 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:64869292 original size:82 final size:81
Alignment explanation
Indices: 64869121--64869301 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
64869111 ATTGAAATTG
* * *
64869121 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
64869186 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
64869202 TGCGGCACTAAGTGTGCGAGTTCGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
64869266 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
64869284 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
64869302 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:64877239 original size:27 final size:27
Alignment explanation
Indices: 64877208--64877384 Score: 203
Period size: 27 Copynumber: 6.6 Consensus size: 27
64877198 TGAATTGTAC
*
64877208 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
64877235 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
64877261 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
64877289 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
64877316 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
64877343 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
64877370 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64877385 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:64877269 original size:54 final size:55
Alignment explanation
Indices: 64877208--64877384 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 55
64877198 TGAATTGTAC
* **
64877208 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
64877263 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * *
64877316 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
64877370 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64877385 GACTCAATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
53 1 0.01
54 104 0.99
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:64877348 original size:81 final size:81
Alignment explanation
Indices: 64877209--64877363 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
64877199 GAATTGTACA
* * *
64877209 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
64877274 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
64877290 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTG
*
64877354 TGCGAGTTGA
65 TGCGAATTGA
64877364 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 1 0.02
81 65 0.98
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:64877375 original size:81 final size:81
Alignment explanation
Indices: 64877205--64877384 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 81
64877195 GATTGAATTG
* * *
64877205 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
64877270 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
64877286 TGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
* **
64877350 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
64877367 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
64877385 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 82 0.99
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:64884166 original size:48 final size:47
Alignment explanation
Indices: 64884079--64884175 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 47
64884069 TTTATGCTAC
** *
64884079 TTTAAGGACTGCTATTTGGTGTATTAATGCAGCTGAAAAATATGTTGT
1 TTTAAGGACTGCTATTTGGTGTATTAATGCAGCAAAAAAAT-TATTGT
* * *
64884127 TTTAAGGACTGTTGTTTGGTGTATTCATGCAGCAAAAAAATTATTGT
1 TTTAAGGACTGCTATTTGGTGTATTAATGCAGCAAAAAAATTATTGT
64884174 TT
1 TT
64884176 AGGCATCAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
47 7 0.16
48 36 0.84
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (47 bp):
TTTAAGGACTGCTATTTGGTGTATTAATGCAGCAAAAAAATTATTGT
Found at i:64884275 original size:91 final size:91
Alignment explanation
Indices: 64884119--64884490 Score: 582
Period size: 91 Copynumber: 4.1 Consensus size: 91
64884109 AGCTGAAAAA
* * *
64884119 TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTCATGCAGCAAAAAAATTATTGTTTAGGCATCA
1 TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTAATGCAGCAAAAAAATTGTTGTTTAGACATCA
*
64884184 ATTAATGTTGTCTAAGTGTCTGTATT
66 ATTAATGTTGTCTAAGTGACTGTATT
* * *
64884210 TATGTTATTTTAAGGACTGTTGTTTGGTGTATTAATACAGCAAAAAAATTGTTGTTTAGATATCA
1 TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTAATGCAGCAAAAAAATTGTTGTTTAGACATCA
* *
64884275 ATTAATGTTTTCTAAGTGACTGCATT
66 ATTAATGTTGTCTAAGTGACTGTATT
* * * *
64884301 TATGATGTTTTAAGGACTGTTGTTTGATGTATTAATGCAGTAGAAAAATTGTTGTTTAGACATCA
1 TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTAATGCAGCAAAAAAATTGTTGTTTAGACATCA
64884366 ATTAATGTTGTCTAAGTGACTGTATT
66 ATTAATGTTGTCTAAGTGACTGTATT
* * *
64884392 TATGTTGTTCTAAGGACTGTTGTTTGTTGTATTAATGCAGCAGAAAAATTGTTGTTTAGACATCA
1 TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTAATGCAGCAAAAAAATTGTTGTTTAGACATCA
64884457 ATTAATGTTGTCTAAGTGACTGTAAATT
66 ATTAATGTTGTCTAAGTGACTGT--ATT
64884485 TATGTT
1 TATGTT
64884491 AATAATGGTT
Statistics
Matches: 257, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
91 248 0.96
93 9 0.04
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.44
Consensus pattern (91 bp):
TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTAATGCAGCAAAAAAATTGTTGTTTAGACATCA
ATTAATGTTGTCTAAGTGACTGTATT
Found at i:64890949 original size:48 final size:48
Alignment explanation
Indices: 64890878--64891215 Score: 595
Period size: 48 Copynumber: 7.0 Consensus size: 48
64890868 CAAGATAAAT
*
64890878 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
*
64890926 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
64890974 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
* * *
64891022 ATATGTATATGTTGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
*
64891070 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
*
64891118 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
* *
64891166 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
64891214 AT
1 AT
64891216 GTGTGTATAT
Statistics
Matches: 279, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 279 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
Found at i:64891406 original size:37 final size:37
Alignment explanation
Indices: 64891356--64891458 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
64891346 GGAAATATAT
*
64891356 TCCGGGTAAGACCCGATGACTACGTGTGGAGCTTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
64891393 TCCGGGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64891430 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
64891459 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:64898321 original size:29 final size:28
Alignment explanation
Indices: 64898286--64898340 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
64898276 CGAGTTATAT
*
64898286 TGATTTGGCTTCGGGCTATGAATATCAGC
1 TGATTTGGCTTCGGGCCATG-ATATCAGC
*
64898315 TGATTTGGTTTCGGGCCATGATATCA
1 TGATTTGGCTTCGGGCCATGATATCA
64898341 CTACTTTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.36
Consensus pattern (28 bp):
TGATTTGGCTTCGGGCCATGATATCAGC
Found at i:64903005 original size:43 final size:44
Alignment explanation
Indices: 64902934--64903067 Score: 175
Period size: 43 Copynumber: 3.1 Consensus size: 44
64902924 TATCGAAATG
* *
64902934 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
64902978 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
*
64903021 T-ATTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGT-AAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
64903065 TGA
1 TGA
64903068 AATGTTATGT
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
42 1 0.01
43 36 0.47
44 12 0.16
45 28 0.36
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:64903050 original size:45 final size:43
Alignment explanation
Indices: 64902951--64903067 Score: 157
Period size: 45 Copynumber: 2.7 Consensus size: 43
64902941 CGGGCTTCGG
*
64902951 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA
* * *
64902994 GCTTAGTAGGCTATGATGCCGGTGAAAT-ATTATTCGAGCCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCG-GCCTTTGA
64903039 GCCTAGCAGGCTATAATGCCGGT-AAATGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA
64903068 AATGTTATGT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
42 1 0.02
43 27 0.43
44 7 0.11
45 28 0.44
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (43 bp):
GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA
Found at i:64903519 original size:38 final size:38
Alignment explanation
Indices: 64903337--64903529 Score: 219
Period size: 38 Copynumber: 5.1 Consensus size: 38
64903327 ATGATATTTG
* ** *
64903337 TATCCGGCTTAAAGACCGCAGGCTATA-TGCTGGAATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TAGTGCTGGTATTA
* * * *
64903375 TATCAGGGTTAAATCTCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
* * *
64903413 TATTCGGGTTAAATCCTGCAGGCTTCA-TGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTT-AGTGCTGGTATTA
* *
64903451 TATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
* *
64903489 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTAGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
64903527 TAT
1 TAT
64903530 TTGGGCCTTT
Statistics
Matches: 130, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 129 0.99
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
Found at i:64903610 original size:45 final size:45
Alignment explanation
Indices: 64903527--64903649 Score: 167
Period size: 45 Copynumber: 2.7 Consensus size: 45
64903517 GCTAGTATTA
* * * *
64903527 TATTTGGGCCTTTGAGCCTAGCAAGTTATTATGACGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGACGGTGAGACAC
* *
64903572 TATTCGGGCCTTTG-GACCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAG-CCTAGCAGGCTATAATGACGGTGAGACAC
*
64903617 TATTCGGGCTTTTGAGCCTAGCAGGCTATAATG
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATG
64903650 TCGATGAAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
44 1 0.01
45 67 0.97
46 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGACGGTGAGACAC
Found at i:64903669 original size:45 final size:45
Alignment explanation
Indices: 64903570--64903672 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
64903560 ACGGTGAGAC
* * *
64903570 ACTATTCGGGCCTTTGGACCTAGCAGGCTATAATGCCGGTGAGAT
1 ACTAATCGGGCCTTTGGACCTAGCAGGCTATAATGCCGATGAAAT
* * *
64903615 ACTATTCGGG-CTTTTGAGCCTAGCAGGCTATAATGTCGATGAAAT
1 ACTAATCGGGCCTTTGGA-CCTAGCAGGCTATAATGCCGATGAAAT
64903660 GA-TAATCGGGCCT
1 -ACTAATCGGGCCT
64903673 CGATCCTACC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
44 6 0.12
45 41 0.82
46 3 0.06
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (45 bp):
ACTAATCGGGCCTTTGGACCTAGCAGGCTATAATGCCGATGAAAT
Found at i:64905372 original size:25 final size:25
Alignment explanation
Indices: 64905344--64905408 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
64905334 CATATAGCAA
*
64905344 GAAGCTCATGT-GAGCTAAGTAACGG
1 GAAGCTCAT-TCGAGCTAAGTAACAG
* *
64905369 GAAGCTCATTCGAGCTGAGTATCAG
1 GAAGCTCATTCGAGCTAAGTAACAG
64905394 GAAGCTC-TTGCGAGC
1 GAAGCTCATT-CGAGC
64905409 AAAATATCGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.09
25 32 0.91
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.22
Consensus pattern (25 bp):
GAAGCTCATTCGAGCTAAGTAACAG
Found at i:64912623 original size:13 final size:13
Alignment explanation
Indices: 64912605--64912637 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
64912595 TATCTACAAG
64912605 TATCTATACAATC
1 TATCTATACAATC
64912618 TATCTATACAATC
1 TATCTATACAATC
64912631 TATCTAT
1 TATCTAT
64912638 CATTTGACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.42
Consensus pattern (13 bp):
TATCTATACAATC
Found at i:64914751 original size:27 final size:27
Alignment explanation
Indices: 64914721--64914864 Score: 173
Period size: 27 Copynumber: 5.3 Consensus size: 27
64914711 TACTGAAATG
* **
64914721 CCCTCGATTTGTAGAATTATTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
64914748 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
64914775 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * *
64914802 TCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
64914829 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
*
64914856 CCATCGATT
1 CCCTCGATT
64914865 GTGAAATTAC
Statistics
Matches: 103, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 101 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:64914779 original size:54 final size:54
Alignment explanation
Indices: 64914721--64914864 Score: 191
Period size: 54 Copynumber: 2.7 Consensus size: 54
64914711 TACTGAAATG
* ** * *
64914721 CCCTCGATTTGTAGAATTATTGTTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTA
*
64914775 CCCTCGATTTATAGAATTACCGTTTTATCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTA
* * *
64914829 CCCTC-AGTTTACAAAATTACCGTTTTACCATCGATT
1 CCCTCGA-TTTATAGAATTACCGTTTTACCCTCGATT
64914865 GTGAAATTAC
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 1 0.01
54 78 0.99
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTA
Found at i:64914900 original size:27 final size:27
Alignment explanation
Indices: 64914868--64914964 Score: 124
Period size: 27 Copynumber: 3.6 Consensus size: 27
64914858 ATCGATTGTG
*
64914868 AAATTACTAAAATACCCCTA-TAGGATA
1 AAATTACCAAAATACCCCTAGTAGG-TA
**
64914895 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
**
64914922 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
*
64914949 AAATTACCGAAATACC
1 AAATTACCAAAATACC
64914965 ACTGGTTTGT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
27 63 0.97
28 2 0.03
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTAGGTA
Found at i:64914936 original size:54 final size:54
Alignment explanation
Indices: 64914863--64914991 Score: 170
Period size: 54 Copynumber: 2.4 Consensus size: 54
64914853 TTACCATCGA
*
64914863 TTGTGAAATTACTAAAATACCCCTA-TAGGATAAAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACTAAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGT
* * ** * *
64914917 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACTAAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
*
64914971 TTGTGAAATTACTGAAATACC
1 TTGTGAAATTACTAAAATACC
64914992 ACTGGTTTGT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 62 0.97
55 2 0.03
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.29
Consensus pattern (54 bp):
TTGTGAAATTACTAAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:64914972 original size:27 final size:27
Alignment explanation
Indices: 64914893--64915046 Score: 173
Period size: 27 Copynumber: 5.7 Consensus size: 27
64914883 CCCTATAGGA
*
64914893 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
*
64914920 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* *
64914947 TAAAATTACCGAAATACCACTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* ** *
64914974 TGAAATTACTGAAATACCACTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* * * * *
64915001 TGAAATTATCGAAATACCCCTGATTTA
1 TAAAATTACCAAAATACCCCTGGTTTG
* *
64915028 CAAAATTACAAAAATACCC
1 TAAAATTACCAAAATACCC
64915047 TTGACTTTCT
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGGTTTG
Found at i:64915098 original size:27 final size:27
Alignment explanation
Indices: 64914894--64915099 Score: 96
Period size: 27 Copynumber: 7.6 Consensus size: 27
64914884 CCTATAGGAT
** * * **
64914894 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTGAAATACCACTGGTTTAC
** * * **
64914921 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTGAAATACCACTGGTTTAC
* **
64914948 AAAATTACCGAAATACCACTGGTTTGT
1 AAAATTACTGAAATACCACTGGTTTAC
* **
64914975 GAAATTACTGAAATACCACTGGTTTGT
1 AAAATTACTGAAATACCACTGGTTTAC
* * *
64915002 GAAATTA-TCGAAATACCCCTGATTTAC
1 AAAATTACT-GAAATACCACTGGTTTAC
** *
64915029 AAAATTACAAAAATACC-CTTGACTTT-C
1 AAAATTACTGAAATACCAC-TG-GTTTAC
* *
64915056 TAAAAATTA-TAAAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCACTGGTTTAC
64915085 AAAATTACTGAAATA
1 AAAATTACTGAAATA
64915100 ACCTTGGTTT
Statistics
Matches: 152, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.01
27 125 0.82
28 7 0.05
29 18 0.12
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCACTGGTTTAC
Found at i:64916074 original size:25 final size:24
Alignment explanation
Indices: 64916036--64916105 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
64916026 AGGAAGTGCT
*
64916036 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
64916060 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
*
64916085 AGAAAGGGCTTTGCCCTAGTT
1 A-AAAGGGCTTTGCCCCAGTT
64916106 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:64916118 original size:24 final size:23
Alignment explanation
Indices: 64916036--64916132 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 23
64916026 AGGAAGTGCT
* * *
64916036 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCTAG-TTATC
*
64916060 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCTAG-TTATC
*
64916085 AGAAAGGGCTTTGCCCTAGTTATT
1 A-AAAGGGCTTTGCCCTAGTTATC
**
64916109 AAAAGAGGCTAGGCCTCTAGTTAT
1 AAAAG-GGCTTTGCC-CTAGTTAT
64916133 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.06
24 13 0.21
25 46 0.73
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCTAGTTATC
Found at i:64916312 original size:42 final size:42
Alignment explanation
Indices: 64916253--64916334 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
64916243 TAGTCTCCCC
*
64916253 AAATGAGCTTGCATACATTCATTGACATTACATGTGATATCA
1 AAATGAGCTTGCATACATCCATTGACATTACATGTGATATCA
*
64916295 AAATGGGCTTGCATACATCCATTGACATTACATGTGATAT
1 AAATGAGCTTGCATACATCCATTGACATTACATGTGATAT
64916335 TGAAATCAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (42 bp):
AAATGAGCTTGCATACATCCATTGACATTACATGTGATATCA
Found at i:64916427 original size:30 final size:31
Alignment explanation
Indices: 64916372--64916450 Score: 135
Period size: 30 Copynumber: 2.6 Consensus size: 31
64916362 TACAGTAAAG
64916372 GCTTCGGCCCAGTGATATGATTTATGAAAAA
1 GCTTCGGCCCAGTGATATGATTTATGAAAAA
*
64916403 GCTTCGGCCCAGTGATAT-ATTTATGAAAAG
1 GCTTCGGCCCAGTGATATGATTTATGAAAAA
64916433 GCTTCGGCCCAGT-ATATG
1 GCTTCGGCCCAGTGATATG
64916451 TCAAGACTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
29 4 0.09
30 24 0.52
31 18 0.39
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (31 bp):
GCTTCGGCCCAGTGATATGATTTATGAAAAA
Found at i:64918714 original size:27 final size:27
Alignment explanation
Indices: 64918684--64918854 Score: 207
Period size: 27 Copynumber: 6.3 Consensus size: 27
64918674 TACTAAAATG
* *
64918684 CCCTCAATTTGTAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
64918711 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * *
64918738 CCCTCAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * * *
64918765 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
64918792 CCATCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * *
64918819 CCCTCAATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
64918846 CCCTCGATT
1 CCCTCGATT
64918855 GTGAAATTAC
Statistics
Matches: 128, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:64918756 original size:54 final size:54
Alignment explanation
Indices: 64918684--64918850 Score: 235
Period size: 54 Copynumber: 3.1 Consensus size: 54
64918674 TACTAAAATG
* * *
64918684 CCCTCAATTTGTAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * *
64918738 CCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * * * *
64918792 CCATCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
64918846 CCCTC
1 CCCTC
64918851 GATTGTGAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 98 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.39
Consensus pattern (54 bp):
CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
Found at i:64918810 original size:81 final size:81
Alignment explanation
Indices: 64918706--64918854 Score: 253
Period size: 81 Copynumber: 1.8 Consensus size: 81
64918696 AAAATTACCA
* * * * *
64918706 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCG
1 TTTTACCATCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCG
64918771 ATTTACAGAATTATCG
66 ATTTACAGAATTATCG
64918787 TTTTACCATCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCG
1 TTTTACCATCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCG
64918852 ATT
66 ATT
64918855 GTGAAATTAC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (81 bp):
TTTTACCATCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCG
ATTTACAGAATTATCG
Found at i:64918916 original size:27 final size:27
Alignment explanation
Indices: 64918886--64919009 Score: 133
Period size: 27 Copynumber: 4.6 Consensus size: 27
64918876 TGTAGGATAG
*
64918886 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
64918913 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* ** ** * *
64918940 AATTACCGAAATACTACTGGTTTTTGA
1 AATTACCAAAATACCCCTAATTTGTAA
***
64918967 AATTATTGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
64918994 AATTACCAAAATACCC
1 AATTACCAAAATACCC
64919010 GATTTACAAA
Statistics
Matches: 76, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
26 2 0.03
27 72 0.95
28 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:64918944 original size:54 final size:54
Alignment explanation
Indices: 64918886--64919009 Score: 151
Period size: 54 Copynumber: 2.3 Consensus size: 54
64918876 TGTAGGATAG
64918886 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTC-AATTTGTAA
* ** * * * ***
64918940 AATTACCGAAATACTACTGGTTTTTGAAATTATTGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAA
64918994 AATTACCAAAATACCC
1 AATTACCAAAATACCC
64919010 GATTTACAAA
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
54 56 0.98
55 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAA
Found at i:64919051 original size:81 final size:81
Alignment explanation
Indices: 64918906--64919062 Score: 185
Period size: 81 Copynumber: 1.9 Consensus size: 81
64918896 ATACCCCTAG
** * * **
64918906 TTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATACTACTGGTTTTTGAAATT
1 TTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAATACTACTGCTTTTAAAAATT
*
64918971 ATTGAAATACCCTCAA
66 ATAGAAATACCCTCAA
* *
64918987 TTTGTAAAATTACCAAAATA-CCC-GATTTACAAAATTACAGAAATAC-CCTTGACTTTCTAAAA
1 TTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAATACTAC-TG-CTTT-TAAAA
64919049 ATTATAGAAATACC
63 ATTATAGAAATACC
64919063 ATTGGTTTAC
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 1 0.02
79 21 0.33
80 6 0.09
81 36 0.56
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (81 bp):
TTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAATACTACTGCTTTTAAAAATT
ATAGAAATACCCTCAA
Found at i:64919085 original size:27 final size:27
Alignment explanation
Indices: 64919012--64919097 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
64919002 AAATACCCGA
* *
64919012 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCCTTG-G
*
64919040 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACT-GAAATACCCTTGG
64919068 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCCTTGG
64919095 TTT
1 TTT
64919098 GTAGATTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
27 23 0.47
28 7 0.14
29 19 0.39
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTGG
Found at i:64920106 original size:24 final size:24
Alignment explanation
Indices: 64920025--64920106 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
64920015 AGGAAGTGCT
* *
64920025 AAAAGGGCTCTG-CCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
64920048 GAAAAGGGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
64920073 AGAAAGGGCTTTGCCCCAG-TTATT
1 A-AAAGGGCTTTGCCCCAGTTTATC
64920097 AAAAGAGGCT
1 AAAAG-GGCT
64920107 AGGCCTACAG
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
23 4 0.08
24 21 0.42
25 25 0.50
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:64920300 original size:42 final size:42
Alignment explanation
Indices: 64920241--64920374 Score: 225
Period size: 42 Copynumber: 3.2 Consensus size: 42
64920231 TAGTCTCCCC
*
64920241 AAATGAGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
64920283 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
* *
64920325 AAACGGGCTTGCATACA-TCTATTAACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTC-ATTGACATTACATGTGATATTG
64920367 AAATGGGC
1 AAATGGGC
64920375 CTAAGGGCCA
Statistics
Matches: 87, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
41 2 0.02
42 85 0.98
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:64920436 original size:31 final size:31
Alignment explanation
Indices: 64920398--64920543 Score: 224
Period size: 31 Copynumber: 4.7 Consensus size: 31
64920388 CGTTTACAGT
64920398 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
* *
64920429 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
64920460 AAAGGCTTC-AGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGA-CCCAGTGATATGATTTATGA
* *
64920491 AAAGGCTTCGACCTAGTGATATGATTTATGG
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
*
64920522 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGACCCAGTGATATG
64920544 TCAAGACTAA
Statistics
Matches: 105, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
30 5 0.05
31 99 0.94
32 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTGATATGATTTATGA
Found at i:64924449 original size:28 final size:29
Alignment explanation
Indices: 64924416--64924470 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
64924406 CCTCGAAATA
*
64924416 CTGATA-TCATGGCCTGAAGCCAAATCAG
1 CTGATATTCATGGCCCGAAGCCAAATCAG
64924444 CTGATATTCATGGCCCGAAGCCAAATC
1 CTGATATTCATGGCCCGAAGCCAAATC
64924471 GGTATATCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (29 bp):
CTGATATTCATGGCCCGAAGCCAAATCAG
Found at i:64929463 original size:11 final size:11
Alignment explanation
Indices: 64929449--64929485 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
64929439 AAATACAAAG
64929449 AAAAGAAAGGA
1 AAAAGAAAGGA
*
64929460 AAAATAAA-G-
1 AAAAGAAAGGA
64929469 AAAAGAAAGGA
1 AAAAGAAAGGA
64929480 AAAAGA
1 AAAAGA
64929486 TTCATCTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 7 0.32
10 2 0.09
11 13 0.59
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.03
Consensus pattern (11 bp):
AAAAGAAAGGA
Found at i:64929470 original size:20 final size:20
Alignment explanation
Indices: 64929445--64929483 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
64929435 CCAAAAATAC
64929445 AAAGAAAAGAAAGGAAAAAT
1 AAAGAAAAGAAAGGAAAAAT
64929465 AAAGAAAAGAAAGGAAAAA
1 AAAGAAAAGAAAGGAAAAA
64929484 GATTCATCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.03
Consensus pattern (20 bp):
AAAGAAAAGAAAGGAAAAAT
Found at i:64929561 original size:35 final size:35
Alignment explanation
Indices: 64929522--64929590 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
64929512 CTTTGATTAA
* *
64929522 GGTATGTGTTTTGTTCTATTTTTTATAATTTCTAG
1 GGTATGTGTTTTGTTCCATTTTTGATAATTTCTAG
64929557 GGTATGTGTTTTGTTCCATTTTTGATAATTTCTA
1 GGTATGTGTTTTGTTCCATTTTTGATAATTTCTA
64929591 TGTTTTTGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.17, C:0.07, G:0.17, T:0.58
Consensus pattern (35 bp):
GGTATGTGTTTTGTTCCATTTTTGATAATTTCTAG
Found at i:64930370 original size:44 final size:42
Alignment explanation
Indices: 64930306--64930440 Score: 139
Period size: 44 Copynumber: 3.1 Consensus size: 42
64930296 ACTTAGGATC
* * *
64930306 TGATATGTGTTTTGGTGTAAGACCATGTCTGGGACGTTGGCA
1 TGATATATGATTTCGTGTAAGACCATGTCTGGGACGTTGGCA
* *
64930348 TCGACT-TATGATTTATGTGTAAGACCATGTCTGGGACATTGGCA
1 T-GA-TATATGATTT-CGTGTAAGACCATGTCTGGGACGTTGGCA
* * *
64930392 TTATATTTGATTTCGTGTAAGACCCTGTCTGGGACAG-TGGCA
1 TGATATATGATTTCGTGTAAGACCATGTCTGGGAC-GTTGGCA
64930434 TTGATAT
1 -TGATAT
64930441 TCGACTACAT
Statistics
Matches: 77, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
42 27 0.35
43 21 0.27
44 29 0.38
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.36
Consensus pattern (42 bp):
TGATATATGATTTCGTGTAAGACCATGTCTGGGACGTTGGCA
Found at i:64930423 original size:42 final size:43
Alignment explanation
Indices: 64930320--64930441 Score: 149
Period size: 42 Copynumber: 2.8 Consensus size: 43
64930310 ATGTGTTTTG
* * * *
64930320 GTGTAAGACCATGTCTGGGACGTTGGCATCGACT-TATGATTTAT
1 GTGTAAGACCATGTCTGGGACATTGGCAT-TA-TATTTGATTTAC
64930364 GTGTAAGACCATGTCTGGGACATTGGCATTATATTTGATTT-C
1 GTGTAAGACCATGTCTGGGACATTGGCATTATATTTGATTTAC
* *
64930406 GTGTAAGACCCTGTCTGGGACAGTGGCATTGATATT
1 GTGTAAGACCATGTCTGGGACATTGGCATT-ATATT
64930442 CGACTACATA
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
42 29 0.41
43 13 0.19
44 28 0.40
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATTATATTTGATTTAC
Found at i:64933161 original size:79 final size:80
Alignment explanation
Indices: 64933006--64933230 Score: 280
Period size: 79 Copynumber: 2.8 Consensus size: 80
64932996 TTGAATGATG
* * * * * *
64933006 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
64933068 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
64933086 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATT
64933149 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
64933165 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
64933230 G
66 G
64933231 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
79 72 0.56
80 47 0.36
81 9 0.07
82 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:64933219 original size:119 final size:120
Alignment explanation
Indices: 64933006--64933230 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
64932996 TTGAATGATG
* *
64933006 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
* *
64933071 GTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
64933126 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
64933188 TTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTG
64 TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTG
64933231 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 1 0.01
119 71 0.77
120 20 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:64933237 original size:40 final size:40
Alignment explanation
Indices: 64933006--64933230 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
64932996 TTGAATGATG
* * * *
64933006 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
64933046 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
64933086 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
64933126 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64933165 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64933206 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64933231 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 37 0.23
40 114 0.71
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64933252 original size:79 final size:78
Alignment explanation
Indices: 64933059--64933263 Score: 261
Period size: 79 Copynumber: 2.6 Consensus size: 78
64933049 GGACTAAGAT
* *
64933059 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATC-CGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
64933124 ATTCCGGGCTAAGC
65 ATACCGGGCTAAGC
*
64933138 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGTGCGAGTTACTAAATCC-GGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
64933202 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAG-C
** * * *
64933218 CCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGTTAAGTCCCGAAGG
64933264 TACGTGATTT
Statistics
Matches: 112, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
78 2 0.02
79 85 0.76
80 25 0.22
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:64941417 original size:30 final size:30
Alignment explanation
Indices: 64941383--64941443 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
64941373 AAAATACAAG
*
64941383 AAAATCTCGCCCAACCATCCAATCACACTA
1 AAAATCTCACCCAACCATCCAATCACACTA
64941413 AAAATCTCACCCAACCATCCAATCACACTA
1 AAAATCTCACCCAACCATCCAATCACACTA
64941443 A
1 A
64941444 CTCTGTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.39, G:0.02, T:0.16
Consensus pattern (30 bp):
AAAATCTCACCCAACCATCCAATCACACTA
Found at i:64943213 original size:46 final size:46
Alignment explanation
Indices: 64943161--64943326 Score: 305
Period size: 46 Copynumber: 3.6 Consensus size: 46
64943151 TGTAACCCGC
*
64943161 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
* *
64943207 CCATAAGTGAACTCGGACTCAACTCAACAAGATCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
64943253 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
64943299 CCATAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
64943327 GAGTTCAGAA
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 115 1.00
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
Found at i:64949073 original size:21 final size:21
Alignment explanation
Indices: 64949049--64949090 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
64949039 TCATCAGATC
64949049 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGCATCGGGGG
** *
64949070 TACAGGTTGAGGTATCGGGGG
1 TACACCTTGAGGCATCGGGGG
64949091 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.17, G:0.43, T:0.21
Consensus pattern (21 bp):
TACACCTTGAGGCATCGGGGG
Found at i:64954989 original size:80 final size:80
Alignment explanation
Indices: 64954856--64955016 Score: 313
Period size: 80 Copynumber: 2.0 Consensus size: 80
64954846 TCACACCAAA
*
64954856 TATGTGTTGCGCGGATGGAAACATCATTAATGAATTTTTGCCCTCTGTCAGACCTATTTCACAAC
1 TATGTGTTGCGCGGATGGAAACATCATTAATGAATTTTTGCCCTCTGTCAGACCTATGTCACAAC
64954921 ACAGGCTTAAACGTG
66 ACAGGCTTAAACGTG
64954936 TATGTGTTGCGCGGATGGAAACATCATTAATGAATTTTTGCCCTCTGTCAGACCTATGTCACAAC
1 TATGTGTTGCGCGGATGGAAACATCATTAATGAATTTTTGCCCTCTGTCAGACCTATGTCACAAC
64955001 ACAGGCTTAAACGTG
66 ACAGGCTTAAACGTG
64955016 T
1 T
64955017 CGCGACACAC
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (80 bp):
TATGTGTTGCGCGGATGGAAACATCATTAATGAATTTTTGCCCTCTGTCAGACCTATGTCACAAC
ACAGGCTTAAACGTG
Found at i:64958188 original size:19 final size:19
Alignment explanation
Indices: 64958144--64958194 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
64958134 ATCATTATTT
64958144 ATTATATATTATTTTTTCAC
1 ATTAT-TATTATTTTTTCAC
*
64958164 A-AATTATTATTATTTT-AC
1 ATTATTATTATT-TTTTCAC
64958182 ATTATTATTATTT
1 ATTATTATTATTT
64958195 ATATATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
18 11 0.41
19 15 0.56
20 1 0.04
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTATTATTATTTTTTCAC
Found at i:64958243 original size:33 final size:33
Alignment explanation
Indices: 64958166--64958244 Score: 83
Period size: 35 Copynumber: 2.3 Consensus size: 33
64958156 TTTTTCACAA
64958166 ATTA-TTATTATTTTACATTATTATTATTTATAT
1 ATTATTTA-TATTTTACATTATTATTATTTATAT
*
64958199 ATTATTGTTATATTTTACTTGTATTA-TATTTAT-T
1 ATTA-T-TTATATTTTACAT-TATTATTATTTATAT
64958233 CATTATTTATAT
1 -ATTATTTATAT
64958245 ACATATATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
33 10 0.25
34 2 0.05
35 20 0.50
36 8 0.20
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (33 bp):
ATTATTTATATTTTACATTATTATTATTTATAT
Found at i:64961961 original size:33 final size:33
Alignment explanation
Indices: 64961924--64961990 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
64961914 AGATGCGATC
64961924 GCAGAATTTGGCATTAGAGGAAGAGAATAAAGG
1 GCAGAATTTGGCATTAGAGGAAGAGAATAAAGG
64961957 GCAGAATTTGGCATTAGAGGAAGAGAATAAAGG
1 GCAGAATTTGGCATTAGAGGAAGAGAATAAAGG
64961990 G
1 G
64961991 TTGAGACCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.42, C:0.06, G:0.34, T:0.18
Consensus pattern (33 bp):
GCAGAATTTGGCATTAGAGGAAGAGAATAAAGG
Found at i:64970935 original size:206 final size:206
Alignment explanation
Indices: 64970551--64971230 Score: 1162
Period size: 206 Copynumber: 3.3 Consensus size: 206
64970541 GCAGATCTGG
* *
64970551 CTGAAGCAAGATCCAATATGGTTTGGCATCCTTGTGCTTATAAGGAGCAAATCGAAGACATAGCT
1 CTGAAGCAA-ATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
* *
64970616 GATTTGATTTTTGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
64970681 AGAACGAATCGAAGTTTGGCGTCTCCATATTCGACAGAGGGCAGACACATAGCGGATCCAATCTT
130 AGAACGAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGAAGACACATAGCGGATCCAATCTT
64970746 CAGATGTTTATA
195 CAGATGTTTATA
* *
64970758 CTGAAGCAAATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGTAGCAAATCGAAGACATAGCTA
1 CTGAAGCAAATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* *
64970823 ATTTGGTTTTCCCGTGCTTACGCTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * *
64970888 GAACAAATCGAAGTTCGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCCAACCTTC
131 GAACGAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGAAGACACATAGCGGATCCAATCTTC
64970953 AGATGTTTATA
196 AGATGTTTATA
*
64970964 CTGAAGCAAATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATTGAAGACATAGCTG
1 CTGAAGCAAATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
64971029 ATTTGGTTTTCGCGTGCTTAAGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
64971094 GAACGAATCGAAGTTTGGCATCTCCATATTCAACGGAGGGAAGACACATAGCGGATCCAATCTTC
131 GAACGAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGAAGACACATAGCGGATCCAATCTTC
64971159 AGATGTTTATA
196 AGATGTTTATA
* *
64971170 CTGAAGCAGATCCAAGATGGTTTTGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATA
1 CTGAAGCAAATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATA
64971231 ACTTGTAATA
Statistics
Matches: 443, Mismatches: 30, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
206 434 0.98
207 9 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (206 bp):
CTGAAGCAAATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACGAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGAAGACACATAGCGGATCCAATCTTC
AGATGTTTATA
Found at i:64972801 original size:29 final size:30
Alignment explanation
Indices: 64972767--64972838 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
64972757 ATCAACCGCG
*
64972767 CACACTTAGTGCCATGTAC-TTTAAACTCA
1 CACACTTAGTGCCATGTACATTTAAACCCA
*
64972796 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCA
64972825 CACACTTAGTGCCA
1 CACACTTAGTGCCA
64972839 ATCTCATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 30 0.81
30 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCA
Found at i:64974755 original size:205 final size:205
Alignment explanation
Indices: 64974397--64975099 Score: 1091
Period size: 205 Copynumber: 3.4 Consensus size: 205
64974387 TTGAGCTGTT
* * ** *
64974397 ACATAACTGATTTGGCTTTCACGTTCTTACATTGAAGCAAATCTAAGATGATTTGGCACCTCTGT
1 ACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGT
* * * *
64974462 GTTTTCAAAGAACAAATCGAAGTCTGGCATCTCCACTTTGACGGAGGGCAGACACATAGCAGATC
66 ATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACATAGCAGATC
* * *
64974527 CAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGTTTATAAGGAG
131 CAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAG
64974592 CAAATCGAAG
196 CAAATCGAAG
*
64974602 ACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGT
1 ACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGT
*
64974667 GTTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACATAGCAGATC
66 ATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACATAGCAGATC
* *
64974732 CAACCTTCAGATGTTTATACTGAAGCAAATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAG
131 CAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAG
64974797 CAAATCGAAG
196 CAAATCGAAG
* * ** * *
64974807 GCATAGCTGATTTGGTTTTTGCGTGCTTATGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGT
1 ACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGT
* * * * *
64974872 ATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAAACACATAGCAGAT
66 ATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCA-CTTCGACGGAGGGCAGACACATAGCAGAT
* * * * *
64974937 CTAACCTTCAGATGATTAGATTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAATGA
130 CCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGA
64975002 GCAAATCGAAG
195 GCAAATCGAAG
* *
64975013 ACATAGCTGATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGT
1 ACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGT
64975078 ATTGTCAGAGAACAAATCGAAG
66 ATTGTCAGAGAACAAATCGAAG
64975100 AAGCAGATTT
Statistics
Matches: 460, Mismatches: 37, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
205 282 0.61
206 178 0.39
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (205 bp):
ACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGT
ATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACATAGCAGATC
CAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAG
CAAATCGAAG
Found at i:64976699 original size:7 final size:7
Alignment explanation
Indices: 64976687--64976753 Score: 55
Period size: 7 Copynumber: 9.1 Consensus size: 7
64976677 ACCTTATTTT
64976687 TATATTA
1 TATATTA
64976694 TATATTA
1 TATATTA
64976701 TATAATTA
1 TAT-ATTA
64976709 TATTATTA
1 TA-TATTA
*
64976717 TATACTA
1 TATATTA
*
64976724 TTCGTATTA
1 -T-ATATTA
*
64976733 T-CATTA
1 TATATTA
*
64976739 TTTATTA
1 TATATTA
64976746 TATATTA
1 TATATTA
64976753 T
1 T
64976754 TTTTCACAAG
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
6 5 0.10
7 25 0.51
8 14 0.29
9 5 0.10
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.57
Consensus pattern (7 bp):
TATATTA
Found at i:64976786 original size:19 final size:19
Alignment explanation
Indices: 64976740--64976790 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
64976730 TTATCATTAT
*
64976740 TTATTATATATTATTTTTCA
1 TTATTAT-TATTATTTTACA
**
64976760 CAAGTTATTATTATTTTACA
1 TTA-TTATTATTATTTTACA
64976780 TTATTATTATT
1 TTATTATTATT
64976791 TATATATTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 8 0.32
20 13 0.52
21 4 0.16
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (19 bp):
TTATTATTATTATTTTACA
Found at i:64976800 original size:7 final size:6
Alignment explanation
Indices: 64976680--64976889 Score: 50
Period size: 6 Copynumber: 34.2 Consensus size: 6
64976670 ATTTTTAACC
* * * *
64976680 TTATTT TTA-TA TTATATA TTA-TA TAATTA -TATTA TTATATA CTATTC
1 TTATTA TTATTA TTAT-TA TTATTA TTATTA TTATTA TTAT-TA TTATTA
* * * **
64976727 GTATTA TCATTA TTTATTA TATATTA TTTTTCA CAAGTTA TTATTA TT-TTA
1 TTATTA TTATTA -TTATTA T-TATTA TTATT-A TTA-TTA TTATTA TTATTA
* * *
64976778 -CATTA TTATTA TTTATATA TTATTG TTA-TA TTTTTA CGTGTATTA -TATTTA
1 TTATTA TTATTA -TTAT-TA TTATTA TTATTA TTATTA --T-TATTA TTA-TTA
*
64976829 TTGATTA TT-TATA TTCA-TA TATATT- TTCA-TA TTATATA TTATAA
1 TT-ATTA TTAT-TA TT-ATTA T-TATTA TT-ATTA TTAT-TA TTATTA
64976873 TTATT- TTA-TA TTATTA T
1 TTATTA TTATTA TTATTA T
64976890 GACATTTTTA
Statistics
Matches: 149, Mismatches: 24, Indels: 62
0.63 0.10 0.26
Matches are distributed among these distances:
4 1 0.01
5 33 0.22
6 59 0.40
7 46 0.31
8 6 0.04
9 4 0.03
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.60
Consensus pattern (6 bp):
TTATTA
Found at i:64976863 original size:23 final size:23
Alignment explanation
Indices: 64976833--64976886 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
64976823 TATTTATTGA
64976833 TTAT-TTATAT-TCAT-ATATATT
1 TTATATTATATATCATAAT-TATT
*
64976854 TTCATATTATATATTATAATTATT
1 TT-ATATTATATATCATAATTATT
64976878 TTATATTAT
1 TTATATTAT
64976887 TATGACATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 2 0.07
22 2 0.07
23 13 0.46
24 9 0.32
25 2 0.07
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (23 bp):
TTATATTATATATCATAATTATT
Found at i:64976888 original size:13 final size:13
Alignment explanation
Indices: 64976765--64976889 Score: 52
Period size: 13 Copynumber: 9.7 Consensus size: 13
64976755 TTTCACAAGT
64976765 TATTATTATTTTA
1 TATTATTATTTTA
*
64976778 CATTATTATTATT-
1 TATTATTATT-TTA
64976791 TATATATTATTGTTA
1 TAT-TATTATT-TTA
* ** *
64976806 TATTTTTA-CGTG
1 TATTATTATTTTA
64976818 TATTA-TA-TTTA
1 TATTATTATTTTA
*
64976829 T-TGATTA-TTTA
1 TATTATTATTTTA
64976840 TATTCATATATATTTTCA
1 TA-T--TAT-TATTTT-A
*
64976858 TATTA-TATATTA
1 TATTATTATTTTA
64976870 TA--ATTATTTTA
1 TATTATTATTTTA
64976881 TATTATTAT
1 TATTATTAT
64976890 GACATTTTTA
Statistics
Matches: 83, Mismatches: 15, Indels: 28
0.66 0.12 0.22
Matches are distributed among these distances:
10 3 0.04
11 19 0.23
12 8 0.10
13 22 0.27
14 15 0.18
15 7 0.08
16 2 0.02
17 4 0.05
18 3 0.04
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (13 bp):
TATTATTATTTTA
Found at i:64979629 original size:21 final size:20
Alignment explanation
Indices: 64979586--64979635 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
64979576 TTTTGTTTTT
* *
64979586 ATTA-TTTAAATATTAACTA
1 ATTATTTTAAATAATAAATA
64979605 ATTATTTTAAATTAATAAATA
1 ATTATTTTAAA-TAATAAATA
64979626 ATTATATTTA
1 ATTAT-TTTA
64979636 GATGTCACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 4 0.15
20 6 0.23
21 12 0.46
22 4 0.15
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTATTTTAAATAATAAATA
Found at i:64980342 original size:36 final size:36
Alignment explanation
Indices: 64980295--64980367 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
64980285 CTAAGTTCTC
64980295 GTGTATTTATCATTTCTAGCTCAAACATTAGAGAGA
1 GTGTATTTATCATTTCTAGCTCAAACATTAGAGAGA
64980331 GTGTATTTATCATTTCTAGCTCAAACATTAGAGAGA
1 GTGTATTTATCATTTCTAGCTCAAACATTAGAGAGA
64980367 G
1 G
64980368 GTTGCAGGTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.36
Consensus pattern (36 bp):
GTGTATTTATCATTTCTAGCTCAAACATTAGAGAGA
Found at i:64990070 original size:6 final size:6
Alignment explanation
Indices: 64990059--64990093 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
64990049 AGGTTTCCAT
* *
64990059 AAATGG AAATGG AAATGA AAATAG AAATGG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATG
64990094 ATCCATTTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.57, C:0.00, G:0.26, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:64990085 original size:18 final size:18
Alignment explanation
Indices: 64990059--64990094 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
64990049 AGGTTTCCAT
*
64990059 AAATGGAAATGGAAATGA
1 AAATAGAAATGGAAATGA
64990077 AAATAGAAATGGAAATGA
1 AAATAGAAATGGAAATGA
64990095 TCCATTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.25, T:0.17
Consensus pattern (18 bp):
AAATAGAAATGGAAATGA
Done.