Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 199 of 343
Found at i:65862276 original size:15 final size:15
Alignment explanation
Indices: 65862256--65862293 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
65862246 TGTGTAATTA
65862256 TTTGCCTTCAGGTGC
1 TTTGCCTTCAGGTGC
65862271 TTTGCCTTCAGGTGC
1 TTTGCCTTCAGGTGC
65862286 TTTGCCTT
1 TTTGCCTT
65862294 TCGTGGTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.05, C:0.26, G:0.24, T:0.45
Consensus pattern (15 bp):
TTTGCCTTCAGGTGC
Found at i:65863092 original size:3 final size:3
Alignment explanation
Indices: 65863084--65863109 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
65863074 CCTTTTTTGA
65863084 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
65863110 GTACATGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:65877799 original size:46 final size:47
Alignment explanation
Indices: 65877644--65877810 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 47
65877634 TGTGTCAGTA
* * *
65877644 TAAGATATGTCTGGGACATGCATCAGCCAT-ATTACGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCAGCTATGATAACGAGAGCTAGTG
* * * ** * *
65877690 TGAGACATGTCTGGGATATGCATCGGCCTCGGGATATAC--CAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAG-CT-ATGATA-ACGAGAGCTAGTG
* *
65877738 TAAGACATGTATGGGACATGCATCAGCTTTGA-AACGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCAGCTATGATAACGAGAGCTAGTG
65877784 TAAGACATGTCTGGGACATGCATCAGC
1 TAAGACATGTCTGGGACATGCATCAGC
65877811 CTCGAGATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
44 2 0.02
45 1 0.01
46 57 0.59
47 3 0.03
48 29 0.30
49 2 0.02
50 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
TAAGACATGTCTGGGACATGCATCAGCTATGATAACGAGAGCTAGTG
Found at i:65877849 original size:94 final size:94
Alignment explanation
Indices: 65877645--65877851 Score: 265
Period size: 94 Copynumber: 2.2 Consensus size: 94
65877635 GTGTCAGTAT
* * * *
65877645 AAGATATGTCTGGGACATGCATCAGCCATATTACGAGAGCTAGTGTGAGACATGTCTGGGATATG
1 AAGATCTGTCTGGGACATGCATCAGCCATATAACGAGAGCTAGTGTAAGACATGTCTGGGACATG
* * * *
65877710 CATCGGCCTCGGGATATACCAGCCAGTGT
66 CATCAGCCTCGAGATATACAAGCCAGTGC
* **
65877739 AAGA-CATGTATGGGACATGCATCAGCTTTGA-AACGAGAGCTAGTGTAAGACATGTCTGGGACA
1 AAGATC-TGTCTGGGACATGCATCAGCCAT-ATAACGAGAGCTAGTGTAAGACATGTCTGGGACA
*
65877802 TGCATCAGCCTCGAGATATACAAGCTAGTGC
64 TGCATCAGCCTCGAGATATACAAGCCAGTGC
*
65877833 AAGATCTGTCTTGGACATG
1 AAGATCTGTCTGGGACATG
65877852 GTGTCAGCTT
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
94 94 0.98
95 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (94 bp):
AAGATCTGTCTGGGACATGCATCAGCCATATAACGAGAGCTAGTGTAAGACATGTCTGGGACATG
CATCAGCCTCGAGATATACAAGCCAGTGC
Found at i:65877931 original size:49 final size:49
Alignment explanation
Indices: 65877871--65878043 Score: 172
Period size: 49 Copynumber: 3.6 Consensus size: 49
65877861 TGTTGTGTGT
*
65877871 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
* * * * *
65877920 CAGTGTAAGACCTGTCTGGGACACGGCATTGGCATCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
* * * * * * * * *
65877969 TAATGTAAGACCTATTTAGGACATGGCATCAACTTTGAT-G-TGCTAA-C
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATG-AAAGC
65878016 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
65878044 GTCGGTATCT
Statistics
Matches: 97, Mismatches: 25, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
47 12 0.12
48 14 0.14
49 71 0.73
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
Found at i:65887886 original size:30 final size:30
Alignment explanation
Indices: 65887852--65887909 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
65887842 ATTTTTGAGC
* * * *
65887852 CTAGGGGTAAAATGGTCATTTTGTAAAACT
1 CTAGGGGAAAAATAGACATTTTGCAAAACT
65887882 CTAGGGGAAAAATAGACATTTTGCAAAA
1 CTAGGGGAAAAATAGACATTTTGCAAAA
65887910 AATGTGAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (30 bp):
CTAGGGGAAAAATAGACATTTTGCAAAACT
Found at i:65888349 original size:21 final size:21
Alignment explanation
Indices: 65888325--65888372 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
65888315 GGCCACACAA
65888325 GCGTGTTGCCCTTTCACACGG
1 GCGTGTTGCCCTTTCACACGG
*
65888346 GCGTGTTGCTCTTTCACACGG
1 GCGTGTTGCCCTTTCACACGG
65888367 GCGTGT
1 GCGTGT
65888373 ACCCTTGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.08, C:0.29, G:0.31, T:0.31
Consensus pattern (21 bp):
GCGTGTTGCCCTTTCACACGG
Found at i:65889837 original size:46 final size:46
Alignment explanation
Indices: 65889710--65889841 Score: 140
Period size: 46 Copynumber: 2.9 Consensus size: 46
65889700 TTAATATTTC
* * * **
65889710 GTATTCTCCAGTCCGCAATATATGCAAGAGTTGGGAACCTAAATTT
1 GTATTCTCAAGTCCGCAACATATGCAAGAGATGGGAACCTAAATCA
* * * *
65889756 TTATTCTCAAATCCGCAACAAATAC-AGAGGATGGGAACCTAAATCA
1 GTATTCTCAAGTCCGCAACATATGCAAGA-GATGGGAACCTAAATCA
** *
65889802 GTATTCTTTAGTCCGCAACATATGCAAGAGCTGGGAACCT
1 GTATTCTCAAGTCCGCAACATATGCAAGAGATGGGAACCT
65889842 GGGCAAAAAT
Statistics
Matches: 68, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
45 3 0.04
46 62 0.91
47 3 0.04
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (46 bp):
GTATTCTCAAGTCCGCAACATATGCAAGAGATGGGAACCTAAATCA
Found at i:65891340 original size:14 final size:15
Alignment explanation
Indices: 65891312--65891358 Score: 53
Period size: 14 Copynumber: 3.1 Consensus size: 15
65891302 TATATATATT
*
65891312 TATTAGTAATAAATTA
1 TATTA-TAATTAATTA
65891328 TATTA-AATTAATTA
1 TATTATAATTAATTA
65891342 -ATTATAATTATATTA
1 TATTATAATTA-ATTA
65891357 TA
1 TA
65891359 AGATATTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 4 0.15
14 13 0.48
15 4 0.15
16 6 0.22
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
TATTATAATTAATTA
Found at i:65891810 original size:13 final size:12
Alignment explanation
Indices: 65891782--65891820 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
65891772 TATAGTAAAT
*
65891782 AAAGAAAGAAAA
1 AAAGAAAGAAAC
65891794 AAAGAAATGAAAC
1 AAAGAAA-GAAAC
65891807 AAAGAAAAGAAAC
1 AAAG-AAAGAAAC
65891820 A
1 A
65891821 GAATAGGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 7 0.29
13 14 0.58
14 3 0.12
ACGTcount: A:0.77, C:0.05, G:0.15, T:0.03
Consensus pattern (12 bp):
AAAGAAAGAAAC
Found at i:65892660 original size:24 final size:22
Alignment explanation
Indices: 65892633--65892692 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 22
65892623 TTTACAATTG
65892633 AAATGGATTGATTTGATATGTGAT
1 AAATGGATTGATTT-ATATG-GAT
**
65892657 AAATTTATTGAATTTATATGGAT
1 AAATGGATTG-ATTTATATGGAT
*
65892680 ATATGTGATTGAT
1 AAATG-GATTGAT
65892693 GTGGAAATTG
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
23 8 0.28
24 17 0.59
25 4 0.14
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (22 bp):
AAATGGATTGATTTATATGGAT
Found at i:65893110 original size:60 final size:59
Alignment explanation
Indices: 65893042--65893177 Score: 177
Period size: 60 Copynumber: 2.3 Consensus size: 59
65893032 ACTCCGTACC
* * * *
65893042 TTACTGTTACTGTTACTGTTCC-AGATTTGTT-CTGATGAGGTATTCTGTGTACCGCTATTT
1 TTACTGTTACTGTTACTGTTCCGA-ATTTGTTCCAG-TGAGGTATTCTGTATACCG-TACTG
*
65893102 TTACTGTTACTGTTACTGTTCCGAATTTGTTCCAGTGAGGTATTCTGTATATCGTACTG
1 TTACTGTTACTGTTACTGTTCCGAATTTGTTCCAGTGAGGTATTCTGTATACCGTACTG
*
65893161 CTACTGTTACTGTTACT
1 TTACTGTTACTGTTACT
65893178 ATTACCGTTA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
59 19 0.28
60 46 0.68
61 3 0.04
ACGTcount: A:0.18, C:0.18, G:0.19, T:0.46
Consensus pattern (59 bp):
TTACTGTTACTGTTACTGTTCCGAATTTGTTCCAGTGAGGTATTCTGTATACCGTACTG
Found at i:65893441 original size:18 final size:17
Alignment explanation
Indices: 65893418--65893466 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
65893408 AACTGATTGT
65893418 TACTGAATATTGGACT-A
1 TACTGAATATTGGA-TGA
*
65893435 CTACTGAATGTCTGGATGA
1 -TACTGAATAT-TGGATGA
65893454 TACTGAATATTGG
1 TACTGAATATTGG
65893467 TTATTACTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 3 0.11
18 19 0.70
19 5 0.19
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (17 bp):
TACTGAATATTGGATGA
Found at i:65895725 original size:41 final size:41
Alignment explanation
Indices: 65895680--65895762 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
65895670 GGGGTCAAAA
65895680 TGTGAAATAAATGAAATTAATGGGCTGCTAGGGACCTAAGG
1 TGTGAAATAAATGAAATTAATGGGCTGCTAGGGACCTAAGG
65895721 TGTGAAATAAATGAAATTAATGGGCTGCTAGGGACCTAAGG
1 TGTGAAATAAATGAAATTAATGGGCTGCTAGGGACCTAAGG
65895762 T
1 T
65895763 AAATTCTGCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.36, C:0.10, G:0.29, T:0.25
Consensus pattern (41 bp):
TGTGAAATAAATGAAATTAATGGGCTGCTAGGGACCTAAGG
Found at i:65901921 original size:30 final size:30
Alignment explanation
Indices: 65901885--65901942 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
65901875 GATTAGCATG
*
65901885 AAATTTCTCTAAAAATAGGCACTTGAGATA
1 AAATTTCTCTAAAAATAGGAACTTGAGATA
65901915 AAATTTCTCTAAAAATAGGAACTTGAGA
1 AAATTTCTCTAAAAATAGGAACTTGAGA
65901943 GTTGTTTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (30 bp):
AAATTTCTCTAAAAATAGGAACTTGAGATA
Found at i:65902940 original size:38 final size:38
Alignment explanation
Indices: 65902898--65902988 Score: 110
Period size: 40 Copynumber: 2.3 Consensus size: 38
65902888 GTCCAACCCA
*
65902898 ACACACCATGTGGGGATAAAATCGACCCACCCAGCCTT
1 ACACACCATGTGGGGATAAAATCGACCCACCCAGCCCT
* * * *
65902936 ACACACCAAGTATGGGGATAAAATTGACCCATCTAGCCCT
1 ACACACC-A-TGTGGGGATAAAATCGACCCACCCAGCCCT
*
65902976 ACACACCAAGTGG
1 ACACACCATGTGG
65902989 TACTGTAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
38 10 0.23
39 2 0.05
40 32 0.73
ACGTcount: A:0.34, C:0.31, G:0.19, T:0.16
Consensus pattern (38 bp):
ACACACCATGTGGGGATAAAATCGACCCACCCAGCCCT
Found at i:65902955 original size:40 final size:40
Alignment explanation
Indices: 65902908--65902986 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
65902898 ACACACCATG
*
65902908 TGGGGATAAAATCGACCCACCCAGCCTTACACACCAAGTA
1 TGGGGATAAAATCGACCCACCCAGCCCTACACACCAAGTA
* * *
65902948 TGGGGATAAAATTGACCCATCTAGCCCTACACACCAAGT
1 TGGGGATAAAATCGACCCACCCAGCCCTACACACCAAGT
65902987 GGTACTGTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.34, C:0.30, G:0.18, T:0.18
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCACCCAGCCCTACACACCAAGTA
Found at i:65913548 original size:48 final size:48
Alignment explanation
Indices: 65913468--65913743 Score: 374
Period size: 48 Copynumber: 5.8 Consensus size: 48
65913458 ACTGTGCTAA
* *
65913468 ATGTACCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * *
65913516 ATGTGTCTGTGTAAGACCATGTTTGGGGCATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * **
65913564 ATGTACTTGTGTAAGACCATGTCTGGGACATGGCATCGATGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
*
65913612 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * *
65913660 GTGTGCCAGTGTAAGGCCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* ** * *
65913708 GTG-GATTCATGTAAGACCATGTCGGGGACATGGCAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
65913744 TGGTACTCTA
Statistics
Matches: 200, Mismatches: 27, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
47 1 0.00
48 199 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.29
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:65913736 original size:144 final size:144
Alignment explanation
Indices: 65913468--65913743 Score: 437
Period size: 144 Copynumber: 1.9 Consensus size: 144
65913458 ACTGTGCTAA
* *
65913468 ATGTACCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATATATGTGTCTGTGTAAGAC
1 ATGTACCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATATATGTGCCAGTGTAAGAC
* * * * *
65913533 CATGTTTGGGGCATGGCATCGGCGATGATATATGTACTTGTGTAAGACCATGTCTGGGACATGGC
66 CATGTCTGGGACATGGCATCGGCGATGATATATGGACTTATGTAAGACCATGTCGGGGACATGGC
65913598 ATCGATGATGATAT
131 ATCGATGATGATAT
* * *
65913612 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATATGTGTGCCAGTGTAAGGC
1 ATGTACCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATATATGTGCCAGTGTAAGAC
*
65913677 CATGTCTGGGACATGGCATCGGCGATGATATGTGGA-TTCATGTAAGACCATGTCGGGGACATGG
66 CATGTCTGGGACATGGCATCGGCGATGATATATGGACTT-ATGTAAGACCATGTCGGGGACATGG
65913741 CAT
130 CAT
65913744 TGGTACTCTA
Statistics
Matches: 120, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
143 2 0.02
144 118 0.98
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.29
Consensus pattern (144 bp):
ATGTACCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATATATGTGCCAGTGTAAGAC
CATGTCTGGGACATGGCATCGGCGATGATATATGGACTTATGTAAGACCATGTCGGGGACATGGC
ATCGATGATGATAT
Found at i:65917136 original size:19 final size:19
Alignment explanation
Indices: 65917112--65917151 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
65917102 ATTAATTTTG
65917112 ATCAAATGAAATT-AAATTA
1 ATCAAAT-AAATTAAAATTA
*
65917131 ATCAAATTAATTAAAATTA
1 ATCAAATAAATTAAAATTA
65917150 AT
1 AT
65917152 ATGATATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
ATCAAATAAATTAAAATTA
Found at i:65918418 original size:19 final size:19
Alignment explanation
Indices: 65918394--65918433 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
65918384 ATTAATTTTG
65918394 ATCAAATTAAATT-AAATTA
1 ATCAAATT-AATTAAAATTA
65918413 ATCAAATTAATTAAAATTA
1 ATCAAATTAATTAAAATTA
65918432 AT
1 AT
65918434 ATGATATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
ATCAAATTAATTAAAATTA
Found at i:65919590 original size:41 final size:41
Alignment explanation
Indices: 65919527--65919664 Score: 163
Period size: 41 Copynumber: 3.4 Consensus size: 41
65919517 GCAAATCGGA
* * *
65919527 ATAGCTTTGGCTAT-ATATGGCACTTAGTGTGTGAGACTGA-G
1 ATAGCTTCGGCTATGA-AAGGCACTTAGTGTGCGAGACT-ATG
*
65919568 ATAGCTTCGGCTATGAAAGGCACTTAGTGTCCGAGACTATG
1 ATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGACTATG
** * *
65919609 ATAGCTTCTACTATGAAAGGCACTTAGTGTGCGAGATTATA
1 ATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGACTATG
*
65919650 ATAGATTCGGCTATG
1 ATAGCTTCGGCTATG
65919665 CTTTGGCACT
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
40 1 0.01
41 81 0.98
42 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (41 bp):
ATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGACTATG
Found at i:65921840 original size:49 final size:49
Alignment explanation
Indices: 65921693--65921841 Score: 144
Period size: 49 Copynumber: 3.0 Consensus size: 49
65921683 AAAACCATAG
* * *
65921693 TTGTCGAGCAACCCAAGGTGGTAGAATGTACATATGCTAATAGTCATCG
1 TTGTCGGGCAACCCAAGGTGGTAGAATGTACATATTCTAATAGTCATCA
* * * * *
65921742 TTGTCGGGCAACCCAAGATGAT-GGA-GTAAATAGATTGTGAA-AG-CTATCA
1 TTGTCGGGCAACCCAAGGTGGTAGAATGTACAT--ATTCT-AATAGTC-ATCA
* *
65921791 TTGTCGGGCAACCCGAGGTGGTAGTATGTACATATTCTAATAGTCATCA
1 TTGTCGGGCAACCCAAGGTGGTAGAATGTACATATTCTAATAGTCATCA
65921840 TT
1 TT
65921842 TCCGAGCAAC
Statistics
Matches: 78, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
47 5 0.06
48 5 0.06
49 58 0.74
50 5 0.06
51 5 0.06
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (49 bp):
TTGTCGGGCAACCCAAGGTGGTAGAATGTACATATTCTAATAGTCATCA
Found at i:65921868 original size:98 final size:97
Alignment explanation
Indices: 65921693--65921873 Score: 222
Period size: 98 Copynumber: 1.9 Consensus size: 97
65921683 AAAACCATAG
* *
65921693 TTGTCGAGCAACCCAAGGTGGTAGAATGTACATATGCTAATAGTCATCGTTGTCGGGCAACCCAA
1 TTGTCGAGCAACCCAAGGTGGTAGAATGTACATATGCTAATAGTCATCATTGTCGAGCAACCCAA
***
65921758 GATGATGGAGTAAATAGATTGTGAAAGCTATCA
66 GATGACAAAGT-AATAGATTGTGAAAGCTATCA
* * * * *
65921791 TTGTCGGGCAACCCGAGGTGGTAGTATGTACATATTCTAATAGTCATCATT-TCCGAGCAACCTA
1 TTGTCGAGCAACCCAAGGTGGTAGAATGTACATATGCTAATAGTCATCATTGT-CGAGCAACCCA
*
65921855 GGACT-ACAAAGTAATAGAT
65 AGA-TGACAAAGTAATAGAT
65921874 CCGTGCATTC
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
97 8 0.11
98 61 0.87
99 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (97 bp):
TTGTCGAGCAACCCAAGGTGGTAGAATGTACATATGCTAATAGTCATCATTGTCGAGCAACCCAA
GATGACAAAGTAATAGATTGTGAAAGCTATCA
Found at i:65930520 original size:42 final size:42
Alignment explanation
Indices: 65930440--65930524 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
65930430 AAGACCTCCT
* * *
65930440 CCTTTGCCTATAGCTGATTGGTGATCTTGACATGGACCTTGA
1 CCTTCGCCTATAACTGATTGGTGATCTAGACATGGACCTTGA
* *
65930482 CCTTCGCCTATAACTGATTGGTGATCTAGACTTTGACCTTGA
1 CCTTCGCCTATAACTGATTGGTGATCTAGACATGGACCTTGA
65930524 C
1 C
65930525 TGTCTTCGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (42 bp):
CCTTCGCCTATAACTGATTGGTGATCTAGACATGGACCTTGA
Found at i:65933763 original size:22 final size:22
Alignment explanation
Indices: 65933738--65933789 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
65933728 ATAATAACAA
* *
65933738 CAAAATAATAGCAAAATGACAG
1 CAAAACAATAACAAAATGACAG
65933760 CAAAACAATAACAAAATGACAG
1 CAAAACAATAACAAAATGACAG
*
65933782 TAAAACAA
1 CAAAACAA
65933790 AAGTAGAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.63, C:0.15, G:0.10, T:0.12
Consensus pattern (22 bp):
CAAAACAATAACAAAATGACAG
Found at i:65938005 original size:27 final size:28
Alignment explanation
Indices: 65937974--65938044 Score: 74
Period size: 27 Copynumber: 2.5 Consensus size: 28
65937964 ATATTTTAAC
**
65937974 ATTAATACATTAAAATATAAATGT-TTG
1 ATTAATACATTAAAATATAAATGTGTAA
* *
65938001 ATTAAATA-ATAAAAATATAATTGTGTAA
1 ATT-AATACATTAAAATATAAATGTGTAA
65938029 ATTTAATACATTAAAA
1 A-TTAATACATTAAAA
65938045 CCATAATTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
27 17 0.49
28 10 0.29
29 8 0.23
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.38
Consensus pattern (28 bp):
ATTAATACATTAAAATATAAATGTGTAA
Found at i:65961316 original size:46 final size:46
Alignment explanation
Indices: 65961249--65961377 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
65961239 TGTAACCCGC
* * *
65961249 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
65961295 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
65961341 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65961378 TGCTCAACCA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:65961396 original size:46 final size:46
Alignment explanation
Indices: 65961254--65961396 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 46
65961244 CCCGCCCATA
* * *
65961254 AGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGT-TTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TCATCCATCC-T
* *
65961299 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT--A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CATCCATCCT
*
65961346 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCCATCCT
65961392 AGTGA
1 AGTGA
65961397 CATGTCACTT
Statistics
Matches: 80, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
44 8 0.10
45 1 0.01
46 66 0.82
48 1 0.01
50 4 0.05
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCCATCCT
Found at i:65964168 original size:26 final size:26
Alignment explanation
Indices: 65964135--65964187 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
65964125 TAAGCATACA
65964135 CGACCTAATGAATGAATGCTTTTAAG
1 CGACCTAATGAATGAATGCTTTTAAG
65964161 CGACCTAATGAATGAATGCTTTTAAG
1 CGACCTAATGAATGAATGCTTTTAAG
65964187 C
1 C
65964188 TAACTCAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (26 bp):
CGACCTAATGAATGAATGCTTTTAAG
Found at i:65969911 original size:38 final size:38
Alignment explanation
Indices: 65969860--65969937 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
65969850 TAATTGACTT
65969860 ATGATATTAACTTAATAAATAACTTAAACATGATTTTG
1 ATGATATTAACTTAATAAATAACTTAAACATGATTTTG
65969898 ATGATATTAACTTAATAAATAACTTAAACATGATTTTG
1 ATGATATTAACTTAATAAATAACTTAAACATGATTTTG
65969936 AT
1 AT
65969938 TATGTCACTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.40
Consensus pattern (38 bp):
ATGATATTAACTTAATAAATAACTTAAACATGATTTTG
Found at i:65969954 original size:38 final size:37
Alignment explanation
Indices: 65969863--65969955 Score: 125
Period size: 38 Copynumber: 2.5 Consensus size: 37
65969853 TTGACTTATG
*
65969863 ATATTAACTTAATAAATAACTTAAACATGATTTTGAT
1 ATATTAACTCAATAAATAACTTAAACATGATTTTGAT
*
65969900 GATATTAACTTAATAAATAACTTAAACATGATTTTGAT
1 -ATATTAACTCAATAAATAACTTAAACATGATTTTGAT
*
65969938 -TATGTCACTCACATAAAT
1 ATAT-TAACTCA-ATAAAT
65969956 GAATAATAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
36 3 0.06
37 5 0.10
38 43 0.84
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (37 bp):
ATATTAACTCAATAAATAACTTAAACATGATTTTGAT
Found at i:65970337 original size:21 final size:21
Alignment explanation
Indices: 65970308--65970348 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
65970298 AAATTATTAA
65970308 ATTTCAAAATATATATAAAAAC
1 ATTTCAAAATATAT-TAAAAAC
*
65970330 ATTT-AAAATTTATTAAAAA
1 ATTTCAAAATATATTAAAAA
65970349 TTAGAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (21 bp):
ATTTCAAAATATATTAAAAAC
Found at i:65970377 original size:11 final size:11
Alignment explanation
Indices: 65970363--65970387 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
65970353 AAAAAAGTAT
65970363 AAAAAATCATA
1 AAAAAATCATA
65970374 AAAAAATCATA
1 AAAAAATCATA
65970385 AAA
1 AAA
65970388 TATATAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAAATCATA
Found at i:65970416 original size:10 final size:10
Alignment explanation
Indices: 65970321--65970416 Score: 56
Period size: 10 Copynumber: 9.7 Consensus size: 10
65970311 TCAAAATATA
65970321 TATAAAAACAT
1 TATAAAAA-AT
*
65970332 T-T-AAAATT
1 TATAAAAAAT
*
65970340 TATTAAAAAT
1 TATAAAAAAT
* *
65970350 TAGAAAAAAG
1 TATAAAAAAT
65970360 TATAAAAAAT
1 TATAAAAAAT
*
65970370 CATAAAAAAAT
1 TAT-AAAAAAT
* *
65970381 CATAAAATA-
1 TATAAAAAAT
*
65970390 TAT-AGAAAT
1 TATAAAAAAT
*
65970399 ATAGAAAAAAT
1 -TATAAAAAAT
65970410 TATAAAA
1 TATAAAA
65970417 TTTTATAAAG
Statistics
Matches: 64, Mismatches: 15, Indels: 13
0.70 0.16 0.14
Matches are distributed among these distances:
8 5 0.08
9 7 0.11
10 36 0.56
11 16 0.25
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.27
Consensus pattern (10 bp):
TATAAAAAAT
Found at i:65970687 original size:10 final size:10
Alignment explanation
Indices: 65970670--65970733 Score: 51
Period size: 10 Copynumber: 6.5 Consensus size: 10
65970660 TTTTGATACA
65970670 TTTT-ATAAT
1 TTTTAATAAT
*
65970679 TTTTAATAAAA
1 TTTTAAT-AAT
* *
65970690 TTTAAATAAC
1 TTTTAATAAT
* *
65970700 TTTTATTAAA
1 TTTTAATAAT
*
65970710 ATTTAATAAT
1 TTTTAATAAT
65970720 TTTT-ATAAT
1 TTTTAATAAT
65970729 TTTTA
1 TTTTA
65970734 TATTTTTTTT
Statistics
Matches: 42, Mismatches: 10, Indels: 5
0.74 0.18 0.09
Matches are distributed among these distances:
9 13 0.31
10 21 0.50
11 8 0.19
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:65970725 original size:20 final size:20
Alignment explanation
Indices: 65970669--65970725 Score: 78
Period size: 21 Copynumber: 2.8 Consensus size: 20
65970659 TTTTTGATAC
* *
65970669 ATTTTATAATTTTTAATAAA
1 ATTTAATAATTTTTATTAAA
*
65970689 ATTTAAATAACTTTTATTAAA
1 ATTT-AATAATTTTTATTAAA
65970710 ATTTAATAATTTTTAT
1 ATTTAATAATTTTTAT
65970726 AATTTTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTAATAATTTTTATTAAA
Found at i:65972408 original size:17 final size:17
Alignment explanation
Indices: 65972386--65972422 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
65972376 CTGCTTGATG
65972386 GTTCAATAATTACTTGA
1 GTTCAATAATTACTTGA
65972403 GTTCAATAATTACTTGA
1 GTTCAATAATTACTTGA
65972420 GTT
1 GTT
65972423 TTGGGTTGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (17 bp):
GTTCAATAATTACTTGA
Found at i:65974611 original size:32 final size:32
Alignment explanation
Indices: 65974534--65974617 Score: 100
Period size: 33 Copynumber: 2.6 Consensus size: 32
65974524 ACCTGAGCTT
* *
65974534 GGCCTAATTTTTTTTCCCAAGCCCATGTTTCG
1 GGCCTAATATTTTTGCCCAAGCCCATGTTTCG
* *
65974566 GGCTTAATAATTTTTGCCCAAGCCCATTTTTC-
1 GGCCTAAT-ATTTTTGCCCAAGCCCATGTTTCG
65974598 GGCCTAATGA-TTTTGCCCAA
1 GGCCTAAT-ATTTTTGCCCAA
65974618 ACCCTCCCAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
31 10 0.22
32 15 0.33
33 20 0.44
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.38
Consensus pattern (32 bp):
GGCCTAATATTTTTGCCCAAGCCCATGTTTCG
Found at i:65993029 original size:41 final size:41
Alignment explanation
Indices: 65992956--65993035 Score: 99
Period size: 41 Copynumber: 2.0 Consensus size: 41
65992946 TTGTTGAGGA
* *
65992956 ACTTTAATGTGCTCTTGGAGCACATTTTTGGCTATTATGGG
1 ACTTTAATGTGCTCTTGAAGCACATTTATGGCTATTATGGG
* * *
65992997 ACTTTAATGTGTTGCTT-AAGCATATTTATGGCTTTTATG
1 ACTTTAATGTGCT-CTTGAAGCACATTTATGGCTATTATG
65993036 AAGCTTGATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 30 0.91
42 3 0.09
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.45
Consensus pattern (41 bp):
ACTTTAATGTGCTCTTGAAGCACATTTATGGCTATTATGGG
Found at i:65996522 original size:37 final size:37
Alignment explanation
Indices: 65996445--65996515 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
65996435 TAACATTGAA
*
65996445 ATTTACTCAATTGAGCTTCATTTAGTATAATGGTACG
1 ATTTACTCAATTGAGCTTCATTTAGTATAATAGTACG
**
65996482 ATTTACTCGGTTGAGCTTCATTTAGTATAATAGT
1 ATTTACTCAATTGAGCTTCATTTAGTATAATAGT
65996516 CAGATTTGGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.42
Consensus pattern (37 bp):
ATTTACTCAATTGAGCTTCATTTAGTATAATAGTACG
Found at i:66000311 original size:27 final size:27
Alignment explanation
Indices: 66000277--66000450 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
66000267 TAAATTGTAC
66000277 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66000304 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66000330 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66000358 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66000386 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66000413 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66000440 AGCACTGAGTG
1 AGCACTAAGTG
66000451 AGCGGACTCA
Statistics
Matches: 125, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66000391 original size:82 final size:81
Alignment explanation
Indices: 66000278--66000433 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66000268 AAATTGTACA
* *
66000278 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66000342 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
66000359 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66000424 TGCGAGTTGA
65 TGCGAATTGA
66000434 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:66008343 original size:27 final size:27
Alignment explanation
Indices: 66008309--66008482 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
66008299 TAAATTGTAC
66008309 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66008336 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66008362 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66008390 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66008418 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66008445 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66008472 AGCACTGAGTG
1 AGCACTAAGTG
66008483 AGCGGACTCA
Statistics
Matches: 125, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66008423 original size:82 final size:81
Alignment explanation
Indices: 66008310--66008465 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66008300 AAATTGTACA
* *
66008310 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66008374 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
66008391 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66008456 TGCGAGTTGA
65 TGCGAATTGA
66008466 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:66018449 original size:15 final size:16
Alignment explanation
Indices: 66018429--66018458 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
66018419 CTTCTTGTCT
66018429 TATCTATGTT-CTCTA
1 TATCTATGTTGCTCTA
66018444 TATCTATGTTGCTCT
1 TATCTATGTTGCTCT
66018459 GGCTATTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.20, G:0.10, T:0.53
Consensus pattern (16 bp):
TATCTATGTTGCTCTA
Found at i:66018765 original size:30 final size:30
Alignment explanation
Indices: 66018729--66018789 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
66018719 GGCCAATATG
66018729 ATCCTCCAAGGACCCTTCAAATAATGGGAT
1 ATCCTCCAAGGACCCTTCAAATAATGGGAT
66018759 ATCCTCCAAGGACCCTTCAAATAATGGGAT
1 ATCCTCCAAGGACCCTTCAAATAATGGGAT
66018789 A
1 A
66018790 ACTTAAAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.23
Consensus pattern (30 bp):
ATCCTCCAAGGACCCTTCAAATAATGGGAT
Found at i:66027785 original size:18 final size:18
Alignment explanation
Indices: 66027762--66027796 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
66027752 TCATTCAAGT
66027762 ATTGACTTGTCTTTTCTA
1 ATTGACTTGTCTTTTCTA
66027780 ATTGACTTGTCTTTTCT
1 ATTGACTTGTCTTTTCT
66027797 TTATATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.17, G:0.11, T:0.57
Consensus pattern (18 bp):
ATTGACTTGTCTTTTCTA
Found at i:66028629 original size:25 final size:25
Alignment explanation
Indices: 66028600--66028703 Score: 145
Period size: 25 Copynumber: 4.2 Consensus size: 25
66028590 CCACACGGCC
* *
66028600 GTGTCACACACCCGTGTGCCAGGCT
1 GTGTCACACGCCCGTGCGCCAGGCT
* *
66028625 ATGTCACACGCCTGTGCGCCAGGCT
1 GTGTCACACGCCCGTGCGCCAGGCT
* *
66028650 GTGTCACACGCCCGTGCGCTAGGCC
1 GTGTCACACGCCCGTGCGCCAGGCT
*
66028675 GTGTCACACGCCCGTGTGCCAGGCT
1 GTGTCACACGCCCGTGCGCCAGGCT
66028700 GTGT
1 GTGT
66028704 AACTCACTGA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 68 1.00
ACGTcount: A:0.13, C:0.36, G:0.31, T:0.20
Consensus pattern (25 bp):
GTGTCACACGCCCGTGCGCCAGGCT
Found at i:66031006 original size:30 final size:30
Alignment explanation
Indices: 66030970--66031029 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
66030960 AATATCTTTC
66030970 CTAACTACTTTCAAACTTGAGGATGCAACA
1 CTAACTACTTTCAAACTTGAGGATGCAACA
66031000 CTAACTACTTTCAAACTTGAGGATGCAACA
1 CTAACTACTTTCAAACTTGAGGATGCAACA
66031030 TTGTAACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (30 bp):
CTAACTACTTTCAAACTTGAGGATGCAACA
Found at i:66036846 original size:34 final size:34
Alignment explanation
Indices: 66036784--66036884 Score: 96
Period size: 34 Copynumber: 3.0 Consensus size: 34
66036774 ACACAGATGC
*
66036784 TCGTATGAGCTAATCCATCTAGCACACCAAATAT
1 TCGTATGAGCTAATCCATCCAGCACACCAAATAT
** **
66036818 TCGTATGA-CTTAATCCATCCAGTGCACCAAATGC
1 TCGTATGAGC-TAATCCATCCAGCACACCAAATAT
* * * **
66036852 TCATATTAACTAATTTATCCAGCACACCAAATA
1 TCGTATGAGCTAATCCATCCAGCACACCAAATA
66036885 CCACTATAAT
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
33 1 0.02
34 51 0.96
35 1 0.02
ACGTcount: A:0.36, C:0.27, G:0.10, T:0.28
Consensus pattern (34 bp):
TCGTATGAGCTAATCCATCCAGCACACCAAATAT
Found at i:66041782 original size:26 final size:26
Alignment explanation
Indices: 66041736--66041810 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 26
66041726 CTCATCCCAT
* *
66041736 TTTTA-CCTTAGTAAAGTTTTTGACAA
1 TTTTACCCTTGGTAAA-ATTTTGACAA
*
66041762 TTTTACCCTTGGTAAAATTTTGACGA
1 TTTTACCCTTGGTAAAATTTTGACAA
* * *
66041788 TTTTACTCTCGATAAAATTTTGA
1 TTTTACCCTTGGTAAAATTTTGA
66041811 GAAATTTCGT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 33 0.79
27 9 0.21
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.45
Consensus pattern (26 bp):
TTTTACCCTTGGTAAAATTTTGACAA
Found at i:66045949 original size:21 final size:21
Alignment explanation
Indices: 66045925--66045972 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
66045915 AAAAAAAGGT
* *
66045925 AAAAAGTTTA-AAAAGTATAA
1 AAAAAATTTAGAAAAATATAA
66045945 AAAAAATTTAGAAAAATATAA
1 AAAAAATTTAGAAAAATATAA
*
66045966 GAAAAAT
1 AAAAAAT
66045973 ATATATTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (21 bp):
AAAAAATTTAGAAAAATATAA
Found at i:66045959 original size:10 final size:11
Alignment explanation
Indices: 66045934--66045975 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
66045924 TAAAAAGTTT
*
66045934 AAAAAGTATAAA
1 AAAAA-TATAAG
*
66045946 AAAAAT-TTAG
1 AAAAATATAAG
66045956 AAAAATATAAG
1 AAAAATATAAG
66045967 AAAAATATA
1 AAAAATATA
66045976 TATTATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 8 0.31
11 13 0.50
12 5 0.19
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (11 bp):
AAAAATATAAG
Found at i:66049368 original size:21 final size:21
Alignment explanation
Indices: 66049325--66049369 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
66049315 AAAGAAGGTT
*
66049325 GGAAGAAAGAGAAAAGGGGAG
1 GGAAGAAAGAGAAAAGGCGAG
* *
66049346 GGAAGAAAGAGAGAAGGCTAG
1 GGAAGAAAGAGAAAAGGCGAG
66049367 GGA
1 GGA
66049370 GAAGCTGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.02, G:0.47, T:0.02
Consensus pattern (21 bp):
GGAAGAAAGAGAAAAGGCGAG
Found at i:66063682 original size:14 final size:16
Alignment explanation
Indices: 66063663--66063702 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
66063653 ATTTTGTTAA
66063663 ATTATAA-TA-ATTAT
1 ATTATAATTATATTAT
66063677 ATTATAATTATATTAT
1 ATTATAATTATATTAT
*
66063693 TTTAT-ATTAT
1 ATTATAATTAT
66063703 GAAATAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 7 0.30
15 7 0.30
16 9 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTATAATTATATTAT
Found at i:66063685 original size:11 final size:11
Alignment explanation
Indices: 66063669--66063702 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
66063659 TTAAATTATA
66063669 ATAATTATATT
1 ATAATTATATT
66063680 ATAATTATATT
1 ATAATTATATT
*
66063691 AT-TTTATATT
1 ATAATTATATT
66063701 AT
1 AT
66063703 GAAATAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
ATAATTATATT
Found at i:66063853 original size:23 final size:23
Alignment explanation
Indices: 66063810--66063853 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
66063800 AGATATTTAT
* *
66063810 TATTATAATTATTATTTAATTGA
1 TATTATAATTATAATTAAATTGA
66063833 TATTA-AATTATAAATTAAATT
1 TATTATAATTAT-AATTAAATT
66063854 AAATAGTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TATTATAATTATAATTAAATTGA
Found at i:66064011 original size:28 final size:29
Alignment explanation
Indices: 66063957--66064016 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
66063947 AGCTAAAGAT
66063957 ATTTATTATAATAATAATTATTAAATT-A
1 ATTTATTATAATAATAATTATTAAATTGA
*
66063985 ATTTATTATAA-AATCATATTA-TGAATTGA
1 ATTTATTATAATAAT-A-ATTATTAAATTGA
66064014 ATT
1 ATT
66064017 AAATTAAAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 3 0.11
28 17 0.61
29 8 0.29
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (29 bp):
ATTTATTATAATAATAATTATTAAATTGA
Found at i:66064143 original size:3 final size:3
Alignment explanation
Indices: 66064137--66064174 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
66064127 ATTATTATTA
66064137 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
66064175 AACTAATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:66064287 original size:13 final size:13
Alignment explanation
Indices: 66064255--66064289 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
66064245 AAACAGGGGG
*
66064255 AAAGGAAAGAAGA
1 AAAGGAAAAAAGA
66064268 AAA-GAAAAAAGA
1 AAAGGAAAAAAGA
66064280 AAAGGAAAAA
1 AAAGGAAAAA
66064290 CTAGGGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAAGGAAAAAAGA
Found at i:66080631 original size:96 final size:99
Alignment explanation
Indices: 66080306--66080962 Score: 414
Period size: 105 Copynumber: 6.4 Consensus size: 99
66080296 TTAAAAGTCA
* * * * *
66080306 CGATCTTAAATCAGCTAACTCAAAAATGGATAAGTTGCGATCTTAAATCAACTAACCTTTGTCAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATATGTTGC-ATC---AATC-AC-AAACTTTGTAAA
* * * * *
66080371 ATCA-ATCGTGAACGTAGGTCA-CGAGTTGTTTA-AGAGCTA
60 ATCAGCT-GTGAACGTAGGTCATCGAGCTATTTAGA-AGTTG
* * * * * * * * *
66080410 CAATCTTAAATCAACTAACTCTAATATGTATAGGTTGAGATATTAAATCAACTAACCTTTGTAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATATGTT--G-CA-TCAATC-AC-AAACTTTGTAAA
* * * * * * *
66080475 ATTAGCTGTAAACATAGGTTATCAAGCTGTTTAGGAGTTG
60 ATCAGCTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTG
* * *
66080515 CGATCTTAAATCAGTTAACTCAAAGATGGATA-GATTGCA-CAA-CA-AAATTTTGTAAAATCAG
1 CGATCTTAAATCAGCTAACTCAAAGATGAATATG-TTGCATCAATCACAAACTTTGTAAAATCAG
*
66080576 TTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTG
65 CTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTG
* * * *
66080611 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGTGATATTAAATCAGCTAACCTTTGTAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATATG-T-TG-CA-TCAATCA-C-AAACTTTGTAAA
* * * * *
66080676 ATCAACTGCGAACATAAGTCGTCGAGCTATTTATG-AGTTG
60 ATCAGCTGTGAACGTAGGTCATCGAGCTATTTA-GAAGTTG
* * * *
66080716 TGATCTTAAATCAGCTAACTCAAATATGAATATGTTACAATCTTAAATCAGCTAACCTTTGTAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATATGTTGC-ATC---AATCA-C-AAACTTTGTAAA
* * * * *
66080781 ATCAACCT-TAAACGTAGGTCATTGAGTTGTTTAGAAGTTG
60 ATC-AGCTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTG
* * * *
66080821 CGGTCTTAAATCAGCTACCTCAAAGATGAATATGTTGCAATATTAAATCATCTAACCTTTGTAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATATGTTGC---A-TCAATCA-C-AAACTTTGTAAA
* ** **
66080886 ATCGGCTGTGAGTGTAGGTCATCGAGCTATTCGGAAGTTG
60 ATCAGCTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTG
*
66080926 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTG
1 CGATCTTAAATCAGCTAACTCAAAGATGAATATGTTG
66080963 TGATCTTAAA
Statistics
Matches: 439, Mismatches: 86, Indels: 55
0.76 0.15 0.09
Matches are distributed among these distances:
96 72 0.16
97 2 0.00
98 3 0.01
99 2 0.00
100 2 0.00
101 2 0.00
102 4 0.01
103 3 0.01
104 68 0.15
105 272 0.62
106 6 0.01
107 2 0.00
108 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (99 bp):
CGATCTTAAATCAGCTAACTCAAAGATGAATATGTTGCATCAATCACAAACTTTGTAAAATCAGC
TGTGAACGTAGGTCATCGAGCTATTTAGAAGTTG
Found at i:66080745 original size:105 final size:105
Alignment explanation
Indices: 66080563--66080990 Score: 538
Period size: 105 Copynumber: 4.1 Consensus size: 105
66080553 ACAACAAAAT
**
66080563 TTTGTAAAATCAGTTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTGCGATCTTAAATCAGCTA
1 TTTGTAAAATCAACTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTGCGATCTTAAATCAGCTA
**
66080628 ACTCAAAGATGAATAGGTTGTGATATTAAATCAGCTAACC
66 ACTCAAAGATGAATAGGTTGCAATATTAAATCAGCTAACC
* * * * *
66080668 TTTGTAAAATCAACTGCGAACATAAGTCGTCGAGCTATTTATG-AGTTGTGATCTTAAATCAGCT
1 TTTGTAAAATCAACTGTGAACGTAGGTCATCGAGCTATTTA-GAAGTTGCGATCTTAAATCAGCT
* * * *
66080732 AACTCAAATATGAATATGTTACAATCTTAAATCAGCTAACC
65 AACTCAAAGATGAATAGGTTGCAATATTAAATCAGCTAACC
* * * * *
66080773 TTTGTAAAATCAACCT-TAAACGTAGGTCATTGAGTTGTTTAGAAGTTGCGGTCTTAAATCAGCT
1 TTTGTAAAATCAA-CTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTGCGATCTTAAATCAGCT
* * *
66080837 ACCTCAAAGATGAATATGTTGCAATATTAAATCATCTAACC
65 AACTCAAAGATGAATAGGTTGCAATATTAAATCAGCTAACC
** ** **
66080878 TTTGTAAAATCGGCTGTGAGTGTAGGTCATCGAGCTATTCGGAAGTTGCGATCTTAAATCAGCTA
1 TTTGTAAAATCAACTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTGCGATCTTAAATCAGCTA
** * *
66080943 ACTCAAAGATGAATAGGTTGTGATCTTAAATCAACTAACC
66 ACTCAAAGATGAATAGGTTGCAATATTAAATCAGCTAACC
66080983 TTTG-AAAA
1 TTTGTAAAA
66080991 CTCAGCATCT
Statistics
Matches: 274, Mismatches: 45, Indels: 9
0.84 0.14 0.03
Matches are distributed among these distances:
104 7 0.03
105 264 0.96
106 3 0.01
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (105 bp):
TTTGTAAAATCAACTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTGCGATCTTAAATCAGCTA
ACTCAAAGATGAATAGGTTGCAATATTAAATCAGCTAACC
Found at i:66080845 original size:210 final size:209
Alignment explanation
Indices: 66080306--66080990 Score: 761
Period size: 210 Copynumber: 3.3 Consensus size: 209
66080296 TTAAAAGTCA
* * *
66080306 CGATCTTAAATCAGCTAACTCAAAAATGGATAAGTTGCGATCTTAAATCAACTAACCTTTGTCAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAAT-AGTTGCGATCTTAAATCAACTAACCTTTGTAAA
* * * * * * *
66080371 ATCAATCGTGAACGTAGGTCA-CGAGTTGTTTA-AGAGCTACAATCTTAAATCAACTAACTCTAA
65 ATCAACCTTGAACGTAGGTCATCGAGTTGTTTAGA-AGTTGCGATCTTAAATCAGCTAACTCAAA
* * * * * *
66080434 TATGTATAGGTTGAGATATTAAATCAACTAACCTTTGTAAAATTAGCTGTAAACATAGGTTATCA
129 GATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAAATCAGCTGTGAACATAGGTCATCG
*
66080499 AGCTGTTTAGGAGTTG
194 AGCTATTTAGGAGTTG
* * *
66080515 CGATCTTAAATCAGTTAACTCAAAGATGGATAGATTGC-A-C---AA-CAA--AA-TTTTGTAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATAG-TTGCGATCTTAAATCAACTAACCTTTGTAAA
** * *
66080571 ATC-AGTTGTGAACGTAGGTCATCGAGCTATTTAGAAGTTGCGATCTTAAATCAGCTAACTCAAA
65 ATCAACCT-TGAACGTAGGTCATCGAGTTGTTTAGAAGTTGCGATCTTAAATCAGCTAACTCAAA
* * * * * *
66080635 GATGAATAGGTTGTGATATTAAATCAGCTAACCTTTGTAAAATCAACTGCGAACATAAGTCGTCG
129 GATGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAAATCAGCTGTGAACATAGGTCATCG
*
66080700 AGCTATTTATGAGTTG
194 AGCTATTTAGGAGTTG
* * * * *
66080716 TGATCTTAAATCAGCTAACTCAAATATGAATATGTTACAATCTTAAATCAGCTAACCTTTGTAAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATA-GTTGCGATCTTAAATCAACTAACCTTTGTAAA
* * * *
66080781 ATCAACCTTAAACGTAGGTCATTGAGTTGTTTAGAAGTTGCGGTCTTAAATCAGCTACCTCAAAG
65 ATCAACCTTGAACGTAGGTCATCGAGTTGTTTAGAAGTTGCGATCTTAAATCAGCTAACTCAAAG
* * * ***
66080846 ATGAATATGTTGCA-ATATTAAATCATCTAACCTTTGTAAAATCGGCTGTGAGTGTAGGTCATCG
130 ATGAATAGGTTG-AGATATTAAATCAACTAACCTTTGTAAAATCAGCTGTGAACATAGGTCATCG
*
66080910 AGCTA-TTCGGAAGTTG
194 AGCTATTTAGG-AGTTG
*
66080926 CGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGTGATCTTAAATCAACTAACCTTTG-AAA
1 CGATCTTAAATCAGCTAACTCAAAGATGAATA-GTTGCGATCTTAAATCAACTAACCTTTGTAAA
66080990 A
65 A
66080991 CTCAGCATCT
Statistics
Matches: 396, Mismatches: 63, Indels: 34
0.80 0.13 0.07
Matches are distributed among these distances:
199 1 0.00
200 23 0.06
201 133 0.34
202 3 0.01
203 4 0.01
204 2 0.01
206 2 0.01
207 3 0.01
208 3 0.01
209 42 0.11
210 178 0.45
211 2 0.01
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (209 bp):
CGATCTTAAATCAGCTAACTCAAAGATGAATAGTTGCGATCTTAAATCAACTAACCTTTGTAAAA
TCAACCTTGAACGTAGGTCATCGAGTTGTTTAGAAGTTGCGATCTTAAATCAGCTAACTCAAAGA
TGAATAGGTTGAGATATTAAATCAACTAACCTTTGTAAAATCAGCTGTGAACATAGGTCATCGAG
CTATTTAGGAGTTG
Found at i:66086802 original size:19 final size:19
Alignment explanation
Indices: 66086771--66086813 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
66086761 GTTTGAAAAA
*
66086771 AAAT-ATTTGCTTGTACAT
1 AAATAATTTACTTGTACAT
*
66086789 AAATAATTTACTTGTTCAT
1 AAATAATTTACTTGTACAT
66086808 AAATAA
1 AAATAA
66086814 ATAAACTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (19 bp):
AAATAATTTACTTGTACAT
Found at i:66094167 original size:21 final size:21
Alignment explanation
Indices: 66094119--66094168 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
66094109 TATACATTAA
*
66094119 AAATATAT-AAAAATAGAAAT
1 AAATATATAAAAAATACAAAT
* *
66094139 AAACATATAAAAAATTCAAAT
1 AAATATATAAAAAATACAAAT
*
66094160 ATATATATA
1 AAATATATA
66094169 GAATCTAGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (21 bp):
AAATATATAAAAAATACAAAT
Found at i:66096718 original size:12 final size:12
Alignment explanation
Indices: 66096703--66096730 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
66096693 CAAGTCAATT
66096703 TTATAAATACTC
1 TTATAAATACTC
66096715 TTATAAATACTC
1 TTATAAATACTC
66096727 TTAT
1 TTAT
66096731 CAGGGAAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.46
Consensus pattern (12 bp):
TTATAAATACTC
Found at i:66099208 original size:12 final size:12
Alignment explanation
Indices: 66099191--66099215 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
66099181 GATTGTTTCA
66099191 TTCTTTTCTTTT
1 TTCTTTTCTTTT
66099203 TTCTTTTCTTTT
1 TTCTTTTCTTTT
66099215 T
1 T
66099216 ACTAATATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTCTTTTCTTTT
Found at i:66099648 original size:3 final size:3
Alignment explanation
Indices: 66099597--66099632 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
66099587 AATGAGTATC
66099597 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
66099633 AAGGAGACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:66100340 original size:15 final size:15
Alignment explanation
Indices: 66100316--66100345 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66100306 ATAATGATTA
*
66100316 AAAAATATTATTTAC
1 AAAAACATTATTTAC
66100331 AAAAACATTATTTAC
1 AAAAACATTATTTAC
66100346 GAATATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (15 bp):
AAAAACATTATTTAC
Found at i:66103347 original size:42 final size:43
Alignment explanation
Indices: 66103269--66103354 Score: 113
Period size: 42 Copynumber: 2.0 Consensus size: 43
66103259 TTACGTTTTA
*
66103269 GAACCACACTGGCAGAGGACATAGGAGTGTGCCCAGGCCGTGT
1 GAACCACACGGGCAGAGGACATAGGAGTGTGCCCAGGCCGTGT
* * *
66103312 GAACCACACGGGCA-AGGACATGGGCA-TGTGTCCAGGTCGTGT
1 GAACCACACGGGCAGAGGACATAGG-AGTGTGCCCAGGCCGTGT
66103354 G
1 G
66103355 GCATATAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 24 0.63
43 14 0.37
ACGTcount: A:0.24, C:0.24, G:0.36, T:0.15
Consensus pattern (43 bp):
GAACCACACGGGCAGAGGACATAGGAGTGTGCCCAGGCCGTGT
Found at i:66105394 original size:54 final size:53
Alignment explanation
Indices: 66105336--66105444 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 53
66105326 TGAAATTAAC
* * *
66105336 TATTTAAATGGTAATTTCATTTTTTTTAATGTTAAATTTTTTGATAAGTAATAA
1 TATTTAAATGGTAATTTCATGTCTTTTAATATT-AATTTTTTGATAAGTAATAA
*
66105390 TATTTAAATGGTAATTTCATGTCTTTTACTATTAATTTTTTGATAAGTAATAA
1 TATTTAAATGGTAATTTCATGTCTTTTAATATTAATTTTTTGATAAGTAATAA
66105443 TA
1 TA
66105445 ATATTTTTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 22 0.43
54 29 0.57
ACGTcount: A:0.35, C:0.04, G:0.09, T:0.52
Consensus pattern (53 bp):
TATTTAAATGGTAATTTCATGTCTTTTAATATTAATTTTTTGATAAGTAATAA
Found at i:66109670 original size:53 final size:53
Alignment explanation
Indices: 66109589--66109739 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
66109579 CTTACACGGT
* *
66109589 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
66109644 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
66109697 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
66109740 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:66114251 original size:53 final size:53
Alignment explanation
Indices: 66114170--66114320 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
66114160 CTTACACGGT
* *
66114170 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
66114225 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
66114278 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
66114321 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:66118825 original size:53 final size:53
Alignment explanation
Indices: 66118744--66118894 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
66118734 CTTACACGGT
* *
66118744 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
66118799 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
66118852 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
66118895 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:66128678 original size:3 final size:3
Alignment explanation
Indices: 66128665--66128744 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
66128655 GAGGGCATAT
66128665 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
66128709 ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
66128745 AACAAAGCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 9 0.15
3 42 0.68
4 9 0.15
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:66128687 original size:12 final size:12
Alignment explanation
Indices: 66128663--66128741 Score: 72
Period size: 12 Copynumber: 6.5 Consensus size: 12
66128653 GAGAGGGCAT
66128663 ATATAATATAATA
1 ATATAA-ATAATA
66128676 ATATAAATAATA
1 ATATAAATAATA
* *
66128688 ATATATACATGAGA
1 ATATA-A-ATAATA
66128702 A-AT-AATAATA
1 ATATAAATAATA
66128712 ATATAAATAATA
1 ATATAAATAATA
* *
66128724 GTAAAAATAATA
1 ATATAAATAATA
*
66128736 AAATAA
1 ATATAA
66128742 TAAAACAAAG
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
10 5 0.09
11 3 0.06
12 31 0.58
13 9 0.17
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:66129218 original size:22 final size:22
Alignment explanation
Indices: 66129190--66129239 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
66129180 GGAGTGGTTG
*
66129190 GGGTGGTTTAGGTGGCCAATGT
1 GGGTGGTTTAGGTGGCCAAGGT
66129212 GGGTGGTTTAGGTGGCCAAGGT
1 GGGTGGTTTAGGTGGCCAAGGT
66129234 GGGTGG
1 GGGTGG
66129240 CCAACAAGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.12, C:0.08, G:0.52, T:0.28
Consensus pattern (22 bp):
GGGTGGTTTAGGTGGCCAAGGT
Found at i:66129266 original size:38 final size:38
Alignment explanation
Indices: 66129220--66129309 Score: 162
Period size: 38 Copynumber: 2.4 Consensus size: 38
66129210 GTGGGTGGTT
*
66129220 TAGGTGGCCAAGGTGGGTGGCCAACAAGGGTAGTGGAG
1 TAGGTGGCCAAGGTGGGTGGCCAAAAAGGGTAGTGGAG
*
66129258 TAGGTGGCCAAGGTGGGTGGCCAAAAAGGGTGGTGGAG
1 TAGGTGGCCAAGGTGGGTGGCCAAAAAGGGTAGTGGAG
66129296 TAGGTGGCCAAGGT
1 TAGGTGGCCAAGGT
66129310 TATTTATTTA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.23, C:0.12, G:0.48, T:0.17
Consensus pattern (38 bp):
TAGGTGGCCAAGGTGGGTGGCCAAAAAGGGTAGTGGAG
Found at i:66129318 original size:4 final size:4
Alignment explanation
Indices: 66129309--66129334 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
66129299 GTGGCCAAGG
66129309 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
66129335 GTGTTTGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:66129615 original size:44 final size:44
Alignment explanation
Indices: 66129560--66130407 Score: 694
Period size: 44 Copynumber: 19.3 Consensus size: 44
66129550 TGAGTTCTTG
* * *
66129560 ATCTGCT-TCTTCGATTTGTTCCCCATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
66129603 ATCTGATGTCTTC-AACTGGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCT-GTTCCCTATAAGCACAGGGATGCCAA
* *
66129647 ATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * * *
66129689 ATGCTGAAATCATCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* * *
66129735 ATCTGCTATCTTCGATCCGTTCCCTATAAGCACAAGGATTCC--
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
66129777 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* * *
66129823 ATCTGTTATCTTCGATCCGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
** * * * *
66129865 ATGCTGAAATCTTCGATCTGCTTCACC-GTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTC-CCTATAAGCACAGGGATGCCAA
*
66129911 ATCTGCTATCTTCGATCTGTTCCCTATAAGTACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
66129955 ATCTGCTATTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* *
66129999 ATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
66130041 ATGCTGAAATCTTCGATCTGCTT-CATCGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCT-ATAAGCACAGGGATGCCAA
66130087 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
66130131 ATCTGCTATTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCAT
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* ** * * * * *
66130175 GT-TGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 ATCTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
66130219 ATCTGCTATCTTCGATCTGTTCCCTATAAGCATAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
66130263 ATCTTCTGTCTTC-AACTTGTTCCCTATAAGCACAAGGATGCCAA
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* * *
66130307 ATCTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
66130349 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
66130395 ATCTACTATCTTC
1 ATCTGCTATCTTC
66130408 AGTCTGCTCC
Statistics
Matches: 649, Mismatches: 120, Indels: 70
0.77 0.14 0.08
Matches are distributed among these distances:
42 10 0.02
43 85 0.13
44 460 0.71
45 84 0.13
46 10 0.02
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:66129853 original size:132 final size:132
Alignment explanation
Indices: 66129559--66130301 Score: 771
Period size: 132 Copynumber: 5.6 Consensus size: 132
66129549 TTGAGTTCTT
* * * * * *
66129559 GATCTGCT-TCTTCGATTTGTTCCCCATAAACACAGGGATGCCAAATCTGATGTCTTCAACTGGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGT
* * * ** * * * *
66129623 TCCCTATAAACACAGGGATGCCAAAT-CTGCTATCTTC-AACTTG-TTCCCTATAAGCACAGGGA
66 TCCCTATAAGCACAAGGATTCC--ATGCTGAAATCTTCGATC-TGCTTCACTGTAAGCACAGGAA
66129685 T-TC-
128 TGTCA
* ** * * * * * * *
66129688 CATGCTGAAATCATCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TC
1 GAT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACT-
*
66129752 CGTTCCCTATAAGCACAAGGATTCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
63 TGTTCCCTATAAGCACAAGGATTCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
66129817 TGTCA
128 TGTCA
* * * ** *
66129822 GATCTGTTATCTTCGATCCGTTCCCTATAAGCACAGGGATTCC--ATGCTGAAATCTTCGA-TCT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGCTATCTTCAACT-T
* * ** * * *
66129884 GCTTCACC-GTAAGCAC-AGGAATGTCAGAT-CTGCTATCTTCGATCTG-TTCCCTATAAGTACA
64 G-TTC-CCTATAAGCACAAGG-AT-TC-CATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACA
* *
66129945 GGGATGCCA
124 GGAATGTCA
* * *
66129954 AATCTGCTATTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTG
1 GATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTG
*
66130018 TTCCCTATAAGCACAGGGATTCCATGCTGAAATCTTCGATCTGCTTCA-TCGTAAGCACAGGAAT
65 TTCCCTATAAGCACAAGGATTCCATGCTGAAATCTTCGATCTGCTTCACT-GTAAGCACAGGAAT
66130082 GTCA
129 GTCA
*
66130086 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGT
* * *
66130151 TCCCTATAAGCACAGGGATGCCATGTTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
66 TCCCTATAAGCACAAGGATTCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
66130216 CA
131 CA
* * *
66130218 GATCTGCTATCTTCGATCTGTTCCCTATAAGCATAGGGATGCCAAATCTTCTGTCTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGT
66130283 TCCCTATAAGCACAAGGAT
66 TCCCTATAAGCACAAGGAT
66130302 GCCAAATCTG
Statistics
Matches: 511, Mismatches: 77, Indels: 49
0.80 0.12 0.08
Matches are distributed among these distances:
129 2 0.00
130 9 0.02
131 60 0.12
132 382 0.75
133 51 0.10
134 7 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (132 bp):
GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGT
TCCCTATAAGCACAAGGATTCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
CA
Found at i:66129866 original size:176 final size:175
Alignment explanation
Indices: 66129559--66130349 Score: 846
Period size: 176 Copynumber: 4.5 Consensus size: 175
66129549 TTGAGTTCTT
* * * ** *
66129559 GATCTGCT-TCTTCGATTTGTTCCCCATAAACACAGGGATGCCAAATCTGATGTCTTCAACTGGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC-AATCTGAAATCTTCAACTTGT
* * * *
66129623 TCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATTC
65 TCACTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACTCGTTCCCTATAAGCACAGGGATTC
*
66129688 CATGCTGAAATCATCGATCTGCTTCACTGTAAGCACAGGAATGTCA
130 CATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA
* * * *
66129734 GATCTGCTATCTTCGATCCGTTCCCTATAAGCACAAGGATTCC-ATGCTGAAATCTTCGA-TCTG
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAT-CTGAAATCTTCAACT-TG
* * * * *
66129797 CTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGA-TCCGTTCCCTATAAGCACAGGGA
64 -TTCACTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACT-CGTTCCCTATAAGCACAGGGA
*
66129861 TTCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCACAGGAATGTCA
127 TTCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA
* ** *
66129910 GATCTGCTATCTTCGATCTGTTCCCTATAAGTACAGGGATGCCAAATCTGCTATTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC-AATCTGAAATCTTCAACTTGT
* * *
66129975 TCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATTC
65 TCACTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACTCGTTCCCTATAAGCACAGGGATTC
66130040 CATGCTGAAATCTTCGATCTGCTTCA-TCGTAAGCACAGGAATGTCA
130 CATGCTGAAATCTTCGATCTGCTTCACT-GTAAGCACAGGAATGTCA
** *
66130086 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCC-AATCTGAAATCTTCAACTTGT
* * ** ** * * * *
66130151 TCCCTATAAGCACAGGGATGCCATGT-TGAAATCTTCGA-TCTGCTTCACTGTAAGCACAGGAAT
65 TCACTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACTC-G-TTCCCTATAAGCACAGGGAT
* ** * * * * *
66130214 GTCAGAT-CTGCTATCTTCGATCTG-TTCCCTATAAGCATAGGGATGCCA
128 -TC-CATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA
* * * * * *** *
66130262 AATCTTCTGTCTTC-AACTTGTTCCCTATAAGCACAAGGATGCCAAATCTGCTGTTTTCAACTTG
1 GATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCC-AATCTGAAATCTTCAACTTG
* *
66130326 TTCCCTATAAGCACAGGGATGCCA
64 TTCACTATAAGCACAGGAATGCCA
66130350 TGCTGAAATC
Statistics
Matches: 538, Mismatches: 62, Indels: 31
0.85 0.10 0.05
Matches are distributed among these distances:
174 4 0.01
175 32 0.06
176 467 0.87
177 30 0.06
178 5 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (175 bp):
GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAATCTGAAATCTTCAACTTGTT
CACTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACTCGTTCCCTATAAGCACAGGGATTCC
ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA
Found at i:66130549 original size:68 final size:68
Alignment explanation
Indices: 66130465--66130651 Score: 268
Period size: 68 Copynumber: 2.8 Consensus size: 68
66130455 CTTCCATTGG
* * * * ** *
66130465 AACTTCAAGGAGATCTGCTATGGCTTTTAGCCGCTCCAATGCCATTTCTGGAAGAAGAGGT-TTG
1 AACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAAATCCT-
66130529 CTGA
65 CTGA
*
66130533 AACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAAATCCTC
1 AACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAAATCCTC
66130598 TGA
66 TGA
* *
66130601 AACTTCAAGGAGATCTGTTGTGGCTTTTAGCAGCTCCAATGTCATTTCAGG
1 AACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGG
66130652 GAAAAAGAAA
Statistics
Matches: 107, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
68 106 0.99
69 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (68 bp):
AACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAAATCCTC
TGA
Found at i:66130966 original size:61 final size:64
Alignment explanation
Indices: 66130848--66130966 Score: 192
Period size: 61 Copynumber: 1.9 Consensus size: 64
66130838 CCATGTATCT
*
66130848 ATGCTTATGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
66130912 ATGCTTTATGTCAAATAATTAGGATG-T-T-AT-GAAATGAATCAAATGCTCCTAACTA
1 ATGC-TTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTA
66130967 GATGCGTTAC
Statistics
Matches: 53, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
61 25 0.47
62 2 0.04
63 1 0.02
64 5 0.09
65 20 0.38
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:66132149 original size:15 final size:14
Alignment explanation
Indices: 66132117--66132163 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 14
66132107 TTTTTTAGAA
66132117 TTTTTT-TGTTTT-
1 TTTTTTATGTTTTG
66132129 TTTTTTAT-TTTCGTG
1 TTTTTTATGTTT--TG
66132144 TTTTTTATGTTTTG
1 TTTTTTATGTTTTG
66132158 TTTTTT
1 TTTTTT
66132164 GCCTTTGCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
12 9 0.30
13 1 0.03
14 9 0.30
15 8 0.27
16 3 0.10
ACGTcount: A:0.04, C:0.02, G:0.11, T:0.83
Consensus pattern (14 bp):
TTTTTTATGTTTTG
Found at i:66134969 original size:19 final size:20
Alignment explanation
Indices: 66134945--66134991 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
66134935 AGTGAAAGTT
66134945 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
66134964 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
66134984 -AATGCAAA
1 TAATGCAAA
66134992 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:66137730 original size:16 final size:17
Alignment explanation
Indices: 66137706--66137751 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
66137696 CATGTTTTTG
*
66137706 TCATGTATTTTTTG-TA
1 TCATATATTTTTTGATA
66137722 TCATATATTTTTTGTACTA
1 TCATATATTTTTTG-A-TA
66137741 TCATATATTTT
1 TCATATATTTT
66137752 GTTAACTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 13 0.50
19 13 0.50
ACGTcount: A:0.24, C:0.09, G:0.07, T:0.61
Consensus pattern (17 bp):
TCATATATTTTTTGATA
Found at i:66140127 original size:29 final size:24
Alignment explanation
Indices: 66140076--66140123 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
66140066 ATTACACGTG
66140076 TAAATATATTATTGCTTAGAAACC
1 TAAATATATTATTGCTTAGAAACC
66140100 TAAATATATTATTGCTTAGAAACC
1 TAAATATATTATTGCTTAGAAACC
66140124 AAACAATTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (24 bp):
TAAATATATTATTGCTTAGAAACC
Found at i:66145454 original size:205 final size:205
Alignment explanation
Indices: 66145102--66145514 Score: 772
Period size: 205 Copynumber: 2.0 Consensus size: 205
66145092 ATGGACAACT
*
66145102 TTGAATACACATATAAGTAAATAGTGAAAGTATAGATAATGTTACTTATAAGCGTGATATATATA
1 TTGAATACACATATAAGTAAATAGTGAAAGTATAGATAATGTTACTTATAAGCATGATATATATA
* *
66145167 CATTAAGGATGTGAAATGGAGAGGAGGAGGAGGAAAATATATGAATGACTTGTGTATAAATTGAT
66 CATTAAGGATGTGAAATAGAGAGGAGGAGGAGGAAAATATATGAATAACTTGTGTATAAATTGAT
66145232 CACATGCCCGATTATAATCGATAAACGTTGAATTAGAAATGATATAATGTTTTATTTCATATGTT
131 CACATGCCCGATTATAATCGATAAACGTTGAATTAGAAATGATATAATGTTTTATTTCATATGTT
66145297 CGTTATTAAA
196 CGTTATTAAA
*
66145307 TTGAATACACATATAAGTAAATAGTGAAATTATAGATAATGTTACTTATAAGCATGATATATATA
1 TTGAATACACATATAAGTAAATAGTGAAAGTATAGATAATGTTACTTATAAGCATGATATATATA
*
66145372 CATTAAGGATGTGAAATAGAGAGGAGGAGGAGGAAAATATATGAATAACTTGTGTATAAGTTGAT
66 CATTAAGGATGTGAAATAGAGAGGAGGAGGAGGAAAATATATGAATAACTTGTGTATAAATTGAT
*
66145437 CACATGTCCGATTATAATCGATAAACGTTGAATTAGAAATGATATAATGTTTTATTTCATATGTT
131 CACATGCCCGATTATAATCGATAAACGTTGAATTAGAAATGATATAATGTTTTATTTCATATGTT
66145502 CGTTATTAAA
196 CGTTATTAAA
66145512 TTG
1 TTG
66145515 TAAATATTGT
Statistics
Matches: 202, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
205 202 1.00
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.34
Consensus pattern (205 bp):
TTGAATACACATATAAGTAAATAGTGAAAGTATAGATAATGTTACTTATAAGCATGATATATATA
CATTAAGGATGTGAAATAGAGAGGAGGAGGAGGAAAATATATGAATAACTTGTGTATAAATTGAT
CACATGCCCGATTATAATCGATAAACGTTGAATTAGAAATGATATAATGTTTTATTTCATATGTT
CGTTATTAAA
Found at i:66145693 original size:51 final size:51
Alignment explanation
Indices: 66145635--66145782 Score: 199
Period size: 51 Copynumber: 2.9 Consensus size: 51
66145625 TGAACCATGG
66145635 CAATATGTGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGGCGA
1 CAATATGTGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGGCGA
** *
66145686 CAATATGTGATATGTGAATATGTGATTTTGTATAAGACCATAGCTGGGCTA
1 CAATATGTGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGGCGA
**** * * *
66145737 TGGCATCTG-TATGTGATTATGTGATTCCGTGTAAGACCATAGCTGG
1 CAATATGTGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGG
66145783 ACTATGGCAT
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 33 0.39
51 52 0.61
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (51 bp):
CAATATGTGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGGCGA
Found at i:66145772 original size:50 final size:51
Alignment explanation
Indices: 66145642--66145858 Score: 253
Period size: 50 Copynumber: 4.3 Consensus size: 51
66145632 TGGCAATATG
* ** * *
66145642 TGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGGCGACAATATG
1 TGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGGCTATGACATC
** *
66145693 TGATATGTGAATATGTGATTTTGTATAAGACCATAGCTGGGCTATGGCATC
1 TGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGGCTATGACATC
* * * *
66145744 TG-TATGTGATTATGTGATTCCGTGTAAGACCATAGCTGGACTATGGCATC
1 TGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGGCTATGACATC
* * * * *
66145794 -GGTATGTG-ATATGTGATTACGTGTACGACCATAGCTGTGCTATGACAT-
1 TGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGGCTATGACATC
66145842 TGATATGTGAATATGTG
1 TGATATGTGAATATGTG
66145859 TAAGACCATA
Statistics
Matches: 143, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
49 42 0.29
50 56 0.39
51 45 0.31
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (51 bp):
TGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGGCTATGACATC
Found at i:66145857 original size:99 final size:102
Alignment explanation
Indices: 66145642--66145858 Score: 264
Period size: 99 Copynumber: 2.2 Consensus size: 102
66145632 TGGCAATATG
* *
66145642 TGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGGCGACAATATGTGATATGTGAATAT
1 TGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGACGACAACATGTGATATGTGAATAT
** *
66145707 GTGATTTTGTATAAGACCATAGCTGGGCTATGGCATC
66 GTGATTACGTATAAGACCATAGCTGGGCTATGACATC
* * * ***
66145744 TG-TATGTGATTATGTGATTCCGTGTAAGACCATAGCTGGACTATGGCATCG-G-TATGTG-ATA
1 TGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGACGACAACAT-GTGATATGTGAATA
* * *
66145805 TGTGATTACGTGTACGACCATAGCTGTGCTATGACAT-
65 TGTGATTACGTATAAGACCATAGCTGGGCTATGACATC
66145842 TGATATGTGAATATGTG
1 TGATATGTGAATATGTG
66145859 TAAGACCATA
Statistics
Matches: 98, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
98 2 0.02
99 47 0.48
100 6 0.06
101 40 0.41
102 3 0.03
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (102 bp):
TGATATGTGAATATGTGATTCCGTATAAGACCATAGCTGGACGACAACATGTGATATGTGAATAT
GTGATTACGTATAAGACCATAGCTGGGCTATGACATC
Found at i:66145860 original size:42 final size:41
Alignment explanation
Indices: 66145800--66145921 Score: 154
Period size: 42 Copynumber: 2.9 Consensus size: 41
66145790 CATCGGTATG
* * * *
66145800 TGATATGTGATTACGTGTACGACCATAGCTGTGCTATGACA
1 TGATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACA
66145841 TTGATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACA
1 -TGATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACA
* * * *
66145883 TCATTATGTGAAGATGTGTAAGACCATAGTTGGACTATG
1 TGA-TATGTGAATATGTGTAAGACCATAGCTGGGCTATG
66145922 GCATCGAGGA
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
41 2 0.03
42 69 0.97
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (41 bp):
TGATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACA
Found at i:66148899 original size:10 final size:10
Alignment explanation
Indices: 66148886--66148924 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
66148876 ATTTCATGTT
66148886 ATTTAAAAAA
1 ATTTAAAAAA
66148896 ATTT-AAAAA
1 ATTTAAAAAA
*
66148905 TTTTAAAAAA
1 ATTTAAAAAA
66148915 ATTTAAAAAA
1 ATTTAAAAAA
66148925 GGGTCCATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 8 0.31
10 18 0.69
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
ATTTAAAAAA
Found at i:66148911 original size:19 final size:19
Alignment explanation
Indices: 66148887--66148923 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
66148877 TTTCATGTTA
66148887 TTTAAAAAAATTTAAAAAT
1 TTTAAAAAAATTTAAAAAT
66148906 TTTAAAAAAATTTAAAAA
1 TTTAAAAAAATTTAAAAA
66148924 AGGGTCCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TTTAAAAAAATTTAAAAAT
Found at i:66151615 original size:19 final size:19
Alignment explanation
Indices: 66151559--66151615 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
66151549 TTATTTTATC
*
66151559 TTTATTTTA-AACTTTATCT
1 TTTATTTTATAA-TTTATTT
* *
66151578 TTTATTGTT-TTATTGATTT
1 TTTATT-TTATAATTTATTT
66151597 TTTATTTTATAATTTATTT
1 TTTATTTTATAATTTATTT
66151616 ATCTTATTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
18 2 0.07
19 25 0.83
20 3 0.10
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.70
Consensus pattern (19 bp):
TTTATTTTATAATTTATTT
Found at i:66154660 original size:16 final size:15
Alignment explanation
Indices: 66154639--66154669 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
66154629 ATGCGTACTT
66154639 TTTTAAAAAATATATA
1 TTTTAAAAAAT-TATA
66154655 TTTTAAAAAATTATA
1 TTTTAAAAAATTATA
66154670 AATTGGTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTTTAAAAAATTATA
Found at i:66154702 original size:44 final size:47
Alignment explanation
Indices: 66154634--66154721 Score: 128
Period size: 44 Copynumber: 1.9 Consensus size: 47
66154624 TAAAAATGCG
66154634 TACTTTTTTAAAAAATATATATTTTAAAAAATTATAAATTGGTTGCA
1 TACTTTTTTAAAAAATATATATTTTAAAAAATTATAAATTGGTTGCA
* * *
66154681 TACTTTTTT-TAAAA-A-ATATTTTATAAATTTATAAATTGGTT
1 TACTTTTTTAAAAAATATATATTTTAAAAAATTATAAATTGGTT
66154722 CAACCAGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
44 24 0.63
45 1 0.03
46 4 0.11
47 9 0.24
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.49
Consensus pattern (47 bp):
TACTTTTTTAAAAAATATATATTTTAAAAAATTATAAATTGGTTGCA
Found at i:66157336 original size:20 final size:21
Alignment explanation
Indices: 66157311--66157350 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
66157301 ATTATTTTAT
*
66157311 TTTATT-TTATAAATAAAATA
1 TTTATTATTAAAAATAAAATA
66157331 TTTATTAATTAAAAATAAAA
1 TTTATT-ATTAAAAATAAAA
66157351 AATTAAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTATTATTAAAAATAAAATA
Found at i:66166293 original size:17 final size:17
Alignment explanation
Indices: 66166258--66166297 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
66166248 GTCGTTTCTC
66166258 TTAAAAAAAATATTGAT
1 TTAAAAAAAATATTGAT
*
66166275 TTAATAAAAATATAT-AT
1 TTAAAAAAAATAT-TGAT
66166292 TTAAAA
1 TTAAAA
66166298 TATTTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TTAAAAAAAATATTGAT
Found at i:66169241 original size:15 final size:15
Alignment explanation
Indices: 66169221--66169253 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
66169211 AAAGTAACTT
*
66169221 TAATAATAATGATAA
1 TAATAATAAAGATAA
66169236 TAATAATAAAGATAA
1 TAATAATAAAGATAA
66169251 TAA
1 TAA
66169254 AATGAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (15 bp):
TAATAATAAAGATAA
Found at i:66169276 original size:24 final size:25
Alignment explanation
Indices: 66169238--66169285 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
66169228 AATGATAATA
66169238 ATAATAAAGATAATA-AAATGAAAAC
1 ATAATAAAGATAATAGAAA-GAAAAC
66169263 ATAATAAAGA-AATAGAAAGAAAA
1 ATAATAAAGATAATAGAAAGAAAA
66169286 TGGAAAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.17
Consensus pattern (25 bp):
ATAATAAAGATAATAGAAAGAAAAC
Found at i:66173855 original size:61 final size:58
Alignment explanation
Indices: 66173789--66173904 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 58
66173779 AGTGATTATC
* ** *
66173789 TTAATATTAAGCTTAATTTAATATTTATATTGTAGATAAATATTCTATTAATTTAATAGAT
1 TTAATATTAAACTTAATCAAATATTTAT-CT-T-GATAAATATTCTATTAATTTAATAGAT
* * *
66173850 TTAATATTAAATTTAATCAAATATTTATCTTGATAAGTATTTTATTAATTTAATA
1 TTAATATTAAACTTAATCAAATATTTATCTTGATAAATATTCTATTAATTTAATA
66173905 TTAAAGTGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
58 22 0.46
59 1 0.02
60 1 0.02
61 24 0.50
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.50
Consensus pattern (58 bp):
TTAATATTAAACTTAATCAAATATTTATCTTGATAAATATTCTATTAATTTAATAGAT
Found at i:66174857 original size:24 final size:25
Alignment explanation
Indices: 66174830--66174888 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
66174820 ATCTATCTCC
66174830 TTATATATATGTT-T-TTATAATTT
1 TTATATATATGTTATATTATAATTT
66174853 TT-TATAATAT-TTATATTATAATTT
1 TTATAT-ATATGTTATATTATAATTT
*
66174877 TGATATATATGT
1 TTATATATATGT
66174889 ATGAGATGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
22 5 0.17
23 7 0.23
24 14 0.47
25 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (25 bp):
TTATATATATGTTATATTATAATTT
Found at i:66186686 original size:30 final size:29
Alignment explanation
Indices: 66186652--66186709 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
66186642 TATTCTTTTG
66186652 GTATAAAATATATAATATATA-ATAT-TTTAT
1 GTAT-AAATA-AT-ATATATACATATATTTAT
66186682 GTATAAATAATATATATACATATATTTA
1 GTATAAATAATATATATACATATATTTA
66186710 AATTTTAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
27 7 0.27
28 6 0.23
29 9 0.35
30 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (29 bp):
GTATAAATAATATATATACATATATTTAT
Found at i:66191355 original size:26 final size:25
Alignment explanation
Indices: 66191302--66191356 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
66191292 TTTTGACATA
* * *
66191302 AAAAATTATGTTAATTTTATTTTTT
1 AAAAATTATGCTAATTTTATTATGT
*
66191327 AAAAATTGTGCTAATTTTATTGATGT
1 AAAAATTATGCTAATTTTATT-ATGT
66191353 AAAA
1 AAAA
66191357 TATAGTTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (25 bp):
AAAAATTATGCTAATTTTATTATGT
Found at i:66193572 original size:17 final size:17
Alignment explanation
Indices: 66193552--66193585 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
66193542 GTTAGCGAAC
66193552 AAATATTTAAATATAAA
1 AAATATTTAAATATAAA
*
66193569 AAATATTTATATATAAA
1 AAATATTTAAATATAAA
66193586 TTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATATTTAAATATAAA
Found at i:66194041 original size:20 final size:20
Alignment explanation
Indices: 66194016--66194063 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
66194006 GGAGCAATTG
*
66194016 AATCAATTTGATTAAAATCA
1 AATCAAATTGATTAAAATCA
**
66194036 AATCAAATTGATTGGAATCA
1 AATCAAATTGATTAAAATCA
*
66194056 AATAAAAT
1 AATCAAAT
66194064 CAGGATATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.31
Consensus pattern (20 bp):
AATCAAATTGATTAAAATCA
Found at i:66198404 original size:48 final size:48
Alignment explanation
Indices: 66198342--66198480 Score: 181
Period size: 48 Copynumber: 2.9 Consensus size: 48
66198332 CACCATGATT
* * * **
66198342 TATGAGAGCTAGTGTAAGACCATGTTTGGGATATGGCATCGGTGTTGA
1 TATGATAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGA
*
66198390 TATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
1 TATGATAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGA
* * *
66198438 TATG-TATGCCAGTGTAAGACAATATCTGGGATATGGCGTCGGC
1 TATGATA-GCCAGTGTAAGACCATGTCTGGGATATGGCATCGGC
66198481 CACGGTATGT
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 2 0.03
48 78 0.98
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (48 bp):
TATGATAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGA
Found at i:66198502 original size:48 final size:41
Alignment explanation
Indices: 66198450--66198698 Score: 147
Period size: 42 Copynumber: 5.6 Consensus size: 41
66198440 TGTATGCCAG
* *
66198450 TGTAAGACAATATCTGGGATATGGCGTCGGCCACGGTATGTGATTTCA
1 TGTAAGAC-ATATCTGGGATATGGCAT-GG--A---TATGAGATTTCA
* * *
66198498 TGTAAGATCGTATCTAGGATATGGCATTGATATGAGATTTCA
1 TGTAAGA-CATATCTGGGATATGGCATGGATATGAGATTTCA
*
66198540 TGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTCA
1 TGTAAGA-CATATCTGGGATATGGCATGGATATGAGATTTCA
** * * * * ** *
66198582 TGTAAGACCATGGCTGGGACATGGCATCGATGTGAGGTCCCG
1 TGTAAGA-CATATCTGGGATATGGCATGGATATGAGATTTCA
* * * * *
66198624 TGTAAGACCATGTCTGGTACATGGCATCGGCACTAACGTGAAATTTCG
1 TGTAAGA-CATATCTGGGATATGGCAT-GG-A-T-A--TGAGATTTCA
*
66198672 TATAAGACCATATCTGGGATATGGCAT
1 TGTAAGA-CATATCTGGGATATGGCAT
66198699 CGACATGTAG
Statistics
Matches: 165, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
42 108 0.65
43 1 0.01
44 1 0.01
45 2 0.01
47 1 0.01
48 51 0.31
49 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (41 bp):
TGTAAGACATATCTGGGATATGGCATGGATATGAGATTTCA
Found at i:66198599 original size:42 final size:42
Alignment explanation
Indices: 66198486--66198650 Score: 186
Period size: 42 Copynumber: 3.9 Consensus size: 42
66198476 TCGGCCACGG
* * * * *
66198486 TATGTGATTTCATGTAAGATCGTATCTAGGATATGGCATTGA
1 TATGAGATTTCATGTAAGACCATATCTGGGACATGGCATTGA
*
66198528 TATGAGATTTCATGTAAGACCATATCTGGGATATGGCATTGA
1 TATGAGATTTCATGTAAGACCATATCTGGGACATGGCATTGA
** *
66198570 TATGAGATTTCATGTAAGACCATGGCTGGGACATGGCATCGA
1 TATGAGATTTCATGTAAGACCATATCTGGGACATGGCATTGA
* * ** * * *
66198612 TGTGAGGTCCCGTGTAAGACCATGTCTGGTACATGGCAT
1 TATGAGATTTCATGTAAGACCATATCTGGGACATGGCAT
66198651 CGGCACTAAC
Statistics
Matches: 108, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 108 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (42 bp):
TATGAGATTTCATGTAAGACCATATCTGGGACATGGCATTGA
Found at i:66198651 original size:42 final size:42
Alignment explanation
Indices: 66198518--66198738 Score: 165
Period size: 42 Copynumber: 5.1 Consensus size: 42
66198508 TATCTAGGAT
* ** * *
66198518 ATGGCATTGATATGAGATTTCATGTAAGACCATATCTGGGAT
1 ATGGCATCGATATGAGATCCCATGTAAGACCATGTCTGGGAC
* ** *
66198560 ATGGCATTGATATGAGATTTCATGTAAGACCATGGCTGGGAC
1 ATGGCATCGATATGAGATCCCATGTAAGACCATGTCTGGGAC
* * * *
66198602 ATGGCATCGATGTGAGGTCCCGTGTAAGACCATGTCTGGTAC
1 ATGGCATCGATATGAGATCCCATGTAAGACCATGTCTGGGAC
* ** * * * *
66198644 ATGGCATCGGCACTAACGTGAAATTTCGTATAAGACCATATCTGGGAT
1 ATGGCATC-G-A-T-A--TGAGATCCCATGTAAGACCATGTCTGGGAC
* **
66198692 ATGGCATCGACATGTAGA-CCCATGTAAGACCATGTCTCAGAC
1 ATGGCATCGATATG-AGATCCCATGTAAGACCATGTCTGGGAC
66198734 ATGGC
1 ATGGC
66198739 TTTGGAATTC
Statistics
Matches: 142, Mismatches: 30, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
42 104 0.73
43 3 0.02
44 2 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 30 0.21
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (42 bp):
ATGGCATCGATATGAGATCCCATGTAAGACCATGTCTGGGAC
Found at i:66205923 original size:92 final size:92
Alignment explanation
Indices: 66205766--66205957 Score: 339
Period size: 92 Copynumber: 2.1 Consensus size: 92
66205756 CAATCTAGTG
66205766 CTTAAACCCTAAAAATATACCGATTTTAAACCTAATACCAAAGTATAAATCATATATAAGCCCCA
1 CTTAAACCCTAAAAATATACCGATTTTAAACCTAATACCAAAGTATAAATCATATATAAGCCCCA
*
66205831 TTATCCCTTAAAACACTATTAGTTTAA
66 TTAGCCCTTAAAACACTATTAGTTTAA
* * *
66205858 CTTAAACCCTAAAAATATACTGCTTTTAAACCTAATACCAAAGTATAAATTATATATAAGCCCCA
1 CTTAAACCCTAAAAATATACCGATTTTAAACCTAATACCAAAGTATAAATCATATATAAGCCCCA
66205923 TTAGCCCTTAAAACACTATTAGTTTAA
66 TTAGCCCTTAAAACACTATTAGTTTAA
*
66205950 CTAAAACC
1 CTTAAACC
66205958 TCAACCAAAC
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 95 1.00
ACGTcount: A:0.43, C:0.22, G:0.05, T:0.30
Consensus pattern (92 bp):
CTTAAACCCTAAAAATATACCGATTTTAAACCTAATACCAAAGTATAAATCATATATAAGCCCCA
TTAGCCCTTAAAACACTATTAGTTTAA
Found at i:66206026 original size:10 final size:10
Alignment explanation
Indices: 66206024--66206058 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
66206014 TTTTCTTTTT
66206024 TTTTTGTTTC
1 TTTTTGTTTC
*
66206034 TTTTTGCTTC
1 TTTTTGTTTC
66206044 TTTATTGTTTC
1 TTT-TTGTTTC
66206055 TTTT
1 TTTT
66206059 ATAGATTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.03, C:0.11, G:0.09, T:0.77
Consensus pattern (10 bp):
TTTTTGTTTC
Found at i:66210680 original size:18 final size:16
Alignment explanation
Indices: 66210645--66210687 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
66210635 CAAATACATT
66210645 TAAAAACATAAAAAAAA
1 TAAAAA-ATAAAAAAAA
*
66210662 TTAAAAATAAGAAACAAA
1 TAAAAAATAA-AAA-AAA
66210680 TAAAAAAT
1 TAAAAAAT
66210688 GAGGCTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 4 0.18
17 8 0.36
18 10 0.45
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (16 bp):
TAAAAAATAAAAAAAA
Found at i:66215774 original size:43 final size:45
Alignment explanation
Indices: 66215651--66215779 Score: 149
Period size: 43 Copynumber: 3.0 Consensus size: 45
66215641 TACATATTTT
* * * * *
66215651 CATATACCGATGCCAACGTCCCAGACGTGGTCTTACACG-AA-AT
1 CATATAACAATGCCAACGTCCCAGACATGGTCTTACATGTAATAA
* * *
66215694 CATATAACGATGCCAACATCCAAGACATGGTCTTACATGTAATAA
1 CATATAACAATGCCAACGTCCCAGACATGGTCTTACATGTAATAA
*
66215739 CA-AT-ACAATGCCAATGTCCCAGACATGGTCTTACATGTAAT
1 CATATAACAATGCCAACGTCCCAGACATGGTCTTACATGTAAT
66215780 CTCATCTCGA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 67 0.91
44 4 0.05
45 3 0.04
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.24
Consensus pattern (45 bp):
CATATAACAATGCCAACGTCCCAGACATGGTCTTACATGTAATAA
Found at i:66223219 original size:3 final size:3
Alignment explanation
Indices: 66223211--66223265 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
66223201 GCAAGTTATC
66223211 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
66223259 TGT TGT T
1 TGT TGT T
66223266 TCTGTTTCAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TGT
Found at i:66232059 original size:55 final size:55
Alignment explanation
Indices: 66231969--66232097 Score: 163
Period size: 55 Copynumber: 2.3 Consensus size: 55
66231959 TGTATATAGG
* * * *
66231969 CGCACGCCCATGTTGTTTTGTCAGTCTTGAGCACGGATGT-TAGGCACGGGCGTGT
1 CGCACGCCCATGTTGTTTTCTCAGTCTTAACCACGGAT-TCTAGACACGGGCGTGT
*
66232024 CGCACGCCCATGTTGTTTTCTCAGT-TTCAACCACGGCTTCTAGACACGGGCGTGT
1 CGCACGCCCATGTTGTTTTCTCAGTCTT-AACCACGGATTCTAGACACGGGCGTGT
* *
66232079 CGCACGCTCGTGTTGTTTT
1 CGCACGCCCATGTTGTTTT
66232098 GACAGATTCA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
54 3 0.05
55 62 0.95
ACGTcount: A:0.14, C:0.27, G:0.28, T:0.31
Consensus pattern (55 bp):
CGCACGCCCATGTTGTTTTCTCAGTCTTAACCACGGATTCTAGACACGGGCGTGT
Found at i:66232127 original size:55 final size:54
Alignment explanation
Indices: 66232010--66232119 Score: 132
Period size: 55 Copynumber: 2.0 Consensus size: 54
66232000 CACGGATGTT
* * *
66232010 AGGCACGGGCGTGTCGCACGCCCATGTTGTTTTCTCAGTTTCAACCACGGCTTCT
1 AGGCACGGGCGTGTCGCACGCCCATGTTGTTTTCACAGATTCAACCACGGC-TCA
* * * * *
66232065 AGACACGGGCGTGTCGCACGCTCGTGTTGTTTTGACAGATTCACCCACGGC-CA
1 AGGCACGGGCGTGTCGCACGCCCATGTTGTTTTCACAGATTCAACCACGGCTCA
66232118 AG
1 AG
66232120 TCGCACGGTC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 3 0.06
55 44 0.94
ACGTcount: A:0.17, C:0.30, G:0.27, T:0.25
Consensus pattern (54 bp):
AGGCACGGGCGTGTCGCACGCCCATGTTGTTTTCACAGATTCAACCACGGCTCA
Done.