Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 201 of 343
Found at i:66589015 original size:46 final size:46
Alignment explanation
Indices: 66588791--66589015 Score: 131
Period size: 46 Copynumber: 4.8 Consensus size: 46
66588781 TATCCGTGTT
* * * *
66588791 GATGCGATGTCCCAGACATGGTCTTACACT-G-ACACA-ACTCTTAGCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCACATAAT-GTGGCC
* * * * * * *
66588837 GATGCATGTCCTAGACATGTCTTACACTGGCTTACGTTACGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCACATAATGTGGCC
* * * * *
66588883 AATGCATGTCCTAGGCATGTCTTGCACTAGCACTCGTC-TCAA--T-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAG--CTC-ACAT-AATGTGGCC
* ** * *
66588929 AATGCCATGTCTGAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACATAATGTGGCC
66588977 GATGCATGTCCCAGACATGTCTTACACTAGCTCACATAA
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCACATAA
66589016 GTGACCAAAA
Statistics
Matches: 138, Mismatches: 28, Indels: 26
0.72 0.15 0.14
Matches are distributed among these distances:
44 10 0.07
45 17 0.12
46 66 0.48
47 24 0.17
48 19 0.14
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCACATAATGTGGCC
Found at i:66596870 original size:27 final size:26
Alignment explanation
Indices: 66596835--66596944 Score: 130
Period size: 27 Copynumber: 4.0 Consensus size: 26
66596825 AGCATGGCTG
* *
66596835 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
66596861 CCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
66596889 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
66596916 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
66596944 C
1 C
66596945 TAGGACGCTT
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 6 0.08
27 38 0.52
28 29 0.40
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:66596943 original size:55 final size:54
Alignment explanation
Indices: 66596835--66596944 Score: 150
Period size: 55 Copynumber: 2.0 Consensus size: 54
66596825 AGCATGGCTG
* *
66596835 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
66596889 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAA-TCGTGGCAGAGCCA
66596944 C
1 C
66596945 TAGGACGCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 19 0.39
55 30 0.61
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:66600866 original size:44 final size:41
Alignment explanation
Indices: 66600755--66600885 Score: 147
Period size: 44 Copynumber: 3.0 Consensus size: 41
66600745 TTTTACATGT
* * *
66600755 AATCAAATATCAATGCCACTGTCCCAGATAGGGTCTTACACAA
1 AATCAAATA-CGATGCCAC-GTCCCAGACATGGTCTTACACAA
* *
66600798 AATCAAATATGATGCCGATGTCCCAGACATGGTCTTACACATA
1 AATCAAATACGATGCC-ACGTCCCAGACATGGTCTTACACA-A
66600841 AATCATAAGT-CGATGCCAACGTCCCAGACATGGTCTTACACAA
1 AATCA-AA-TACGATGCC-ACGTCCCAGACATGGTCTTACACAA
66600884 AA
1 AA
66600886 ACACATATAG
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
42 25 0.33
43 19 0.25
44 31 0.41
45 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.23
Consensus pattern (41 bp):
AATCAAATACGATGCCACGTCCCAGACATGGTCTTACACAA
Found at i:66613445 original size:27 final size:27
Alignment explanation
Indices: 66613415--66613468 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
66613405 AAAAGAAGTT
*
66613415 AATGTGGCTTATAATGTAGGTAATTTG
1 AATGTGGCTTATAATGGAGGTAATTTG
66613442 AATGTGGCTTATAATGGAGGTAATTTG
1 AATGTGGCTTATAATGGAGGTAATTTG
66613469 CATTAAACGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.04, G:0.28, T:0.39
Consensus pattern (27 bp):
AATGTGGCTTATAATGGAGGTAATTTG
Found at i:66619209 original size:43 final size:43
Alignment explanation
Indices: 66619148--66619359 Score: 218
Period size: 43 Copynumber: 5.0 Consensus size: 43
66619138 TGCCGAGATG
*
66619148 TGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTA
* *
66619191 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTATTC
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTA
* *
66619235 T-ATTACATGTAAGACCATGTTTGGGACATTGGCA-T-CATTAA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATT-A
* * * * * *
66619276 TCGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-ATATG
1 T-GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TA
* * * *
66619320 TGGTAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
66619360 GAGTTAAATA
Statistics
Matches: 139, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
40 3 0.02
41 1 0.01
42 7 0.05
43 119 0.86
44 8 0.06
45 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTA
Found at i:66619299 original size:86 final size:86
Alignment explanation
Indices: 66619150--66619356 Score: 253
Period size: 86 Copynumber: 2.4 Consensus size: 86
66619140 CCGAGATGTG
*
66619150 ATTACATGTAAGACCATGTTTGGGACATTGGCATTGTATTATGATTACATGTAAGACCATGTCTG
1 ATTACATGTAAGACCATGTTTGGGACATTGGCATTGCATTATGATTACATGTAAGACCATGTCTG
*
66619215 GGACATTGGCATCGTTATTCT
66 GGACAGTGGCATCGTTATTCT
* * *
66619236 ATTACATGTAAGACCATGTTTGGGACATTGGCA-T-CATTAATCGATTTCGTGTAAGACCCTGTC
1 ATTACATGTAAGACCATGTTTGGGACATTGGCATTGCATT-AT-GATTACATGTAAGACCATGTC
* *
66619299 TGGGACAGTGGCATCGATATGTGGT
64 TGGGACAGTGGCATCGTTAT-T-CT
* * *
66619324 A--ACATGTAAGACCATATCTGGGATA-TGGCATTG
1 ATTACATGTAAGACCATGTTTGGGACATTGGCATTG
66619357 TATGAGTTAA
Statistics
Matches: 105, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
84 3 0.03
85 8 0.08
86 91 0.87
87 1 0.01
88 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (86 bp):
ATTACATGTAAGACCATGTTTGGGACATTGGCATTGCATTATGATTACATGTAAGACCATGTCTG
GGACAGTGGCATCGTTATTCT
Found at i:66624262 original size:30 final size:30
Alignment explanation
Indices: 66624226--66624282 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
66624216 CGATGATTGT
66624226 TTAAGATTCGTAGGCCGAATATGTGTTCTG
1 TTAAGATTCGTAGGCCGAATATGTGTTCTG
*
66624256 TTAAGATTCGTTGGCCGAATATGTGTT
1 TTAAGATTCGTAGGCCGAATATGTGTT
66624283 TTGAGAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.23, C:0.12, G:0.26, T:0.39
Consensus pattern (30 bp):
TTAAGATTCGTAGGCCGAATATGTGTTCTG
Found at i:66626260 original size:44 final size:45
Alignment explanation
Indices: 66626166--66626260 Score: 190
Period size: 45 Copynumber: 2.1 Consensus size: 45
66626156 ATTTTTGAGT
66626166 TTTTTTTTTGTGATTTTGTAAAATGCCATTGATGATAGCTTGATG
1 TTTTTTTTTGTGATTTTGTAAAATGCCATTGATGATAGCTTGATG
66626211 TTTTTTTTTGTGATTTTGTAAAATGCCATTGATGATAGCTTGATG
1 TTTTTTTTTGTGATTTTGTAAAATGCCATTGATGATAGCTTGATG
66626256 TTTTT
1 TTTTT
66626261 GAGTCTTGAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.21, C:0.06, G:0.19, T:0.54
Consensus pattern (45 bp):
TTTTTTTTTGTGATTTTGTAAAATGCCATTGATGATAGCTTGATG
Found at i:66626938 original size:43 final size:43
Alignment explanation
Indices: 66626855--66626986 Score: 167
Period size: 43 Copynumber: 3.1 Consensus size: 43
66626845 TGTTATTCCA
* ** *
66626855 TGTAAGACCATGTTTGGGGCATTTTCATTG-TATTATGATTACG
1 TGTAAGACCATGTTTGGGACATTGGCATCGTTATT-TGATTACG
* *
66626898 TGTAAGACCATGTTTGGGACATTGGCATCGTTATTCGATTATG
1 TGTAAGACCATGTTTGGGACATTGGCATCGTTATTTGATTACG
* * *
66626941 TGTAAGACCATGTCTAGGACATTGGCATCGTTATTTGGTTACG
1 TGTAAGACCATGTTTGGGACATTGGCATCGTTATTTGATTACG
66626984 TGT
1 TGT
66626987 GAGGAAATGC
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
43 73 0.95
44 4 0.05
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.39
Consensus pattern (43 bp):
TGTAAGACCATGTTTGGGACATTGGCATCGTTATTTGATTACG
Found at i:66627997 original size:16 final size:16
Alignment explanation
Indices: 66627960--66627997 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
66627950 ACTAACTGAT
*
66627960 AAAAAATAAACAGCTA
1 AAAAAATAAACAACTA
66627976 AAAAAATAAA-AACTA
1 AAAAAATAAACAACTA
66627991 AACAAAA
1 AA-AAAA
66627998 GAATTTTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.76, C:0.11, G:0.03, T:0.11
Consensus pattern (16 bp):
AAAAAATAAACAACTA
Found at i:66635543 original size:22 final size:23
Alignment explanation
Indices: 66635495--66635543 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
66635485 AAAAAATTAT
* * *
66635495 GCCAGTAAAAATTCAGACAAGTT
1 GCCAGTAAAAATGCAGACAAATC
*
66635518 GCCAGTAAAAATGC-GATAAATC
1 GCCAGTAAAAATGCAGACAAATC
66635540 GCCA
1 GCCA
66635544 TTCCCTTCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.18
Consensus pattern (23 bp):
GCCAGTAAAAATGCAGACAAATC
Found at i:66637251 original size:67 final size:67
Alignment explanation
Indices: 66637171--66637359 Score: 333
Period size: 67 Copynumber: 2.8 Consensus size: 67
66637161 ATACTATGTG
***
66637171 GTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTATGGGATAA
1 GTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACAAGATAA
66637236 AT
66 AT
*
66637238 GTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACCATGTCGACAAGAGAGCTACAAGATAA
1 GTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACAAGATAA
66637303 AT
66 AT
*
66637305 GTAGCTAGGTCACATGTGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGC
1 GTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGC
66637360 CGAATGTGTA
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 116 1.00
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (67 bp):
GTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACAAGATAA
AT
Found at i:66644728 original size:27 final size:27
Alignment explanation
Indices: 66644698--66644852 Score: 136
Period size: 27 Copynumber: 5.7 Consensus size: 27
66644688 TGCTATTCAC
* *
66644698 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
66644725 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
66644752 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
66644780 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
66644807 TCTTTTCGCACACTTAGTGCAACAT-A
1 TCAATTCGCACACTTAGTGCCACATAA
66644833 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
66644853 TGTACAATTT
Statistics
Matches: 103, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
26 18 0.17
27 63 0.61
28 22 0.21
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:66644769 original size:55 final size:54
Alignment explanation
Indices: 66644703--66644853 Score: 171
Period size: 55 Copynumber: 2.8 Consensus size: 54
66644693 TTCACTCAAC
* *
66644703 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACAT-ATCAAATCGCACACTTAGTGCTATCATA-TTAGAT
* * * ***
66644758 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCTTT
1 TCGCACACTTAGTGCCACAT-ATCAAATCGCACACTTAGTGCTATCATATTAGAT
* *
66644812 TCGCACACTTAGTGCAACATATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATATCAAATCGCACACTTAGTGCT
66644854 GTACAATTTA
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
53 18 0.22
54 22 0.28
55 40 0.50
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (54 bp):
TCGCACACTTAGTGCCACATATCAAATCGCACACTTAGTGCTATCATATTAGAT
Found at i:66656446 original size:40 final size:40
Alignment explanation
Indices: 66656398--66656643 Score: 388
Period size: 40 Copynumber: 6.2 Consensus size: 40
66656388 GGACTAAGAT
*
66656398 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
66656438 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
66656478 CCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
66656518 CCGAAGGCATTTGTGGGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
66656558 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* * *
66656598 CCGAAGGCATTTGTGCGAGTTG-TTATAT-CTGGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
66656637 CCGAAGG
1 CCGAAGG
66656644 TACTTGGGTT
Statistics
Matches: 196, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
39 16 0.08
40 179 0.91
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:66661538 original size:43 final size:43
Alignment explanation
Indices: 66661477--66661644 Score: 257
Period size: 43 Copynumber: 3.9 Consensus size: 43
66661467 ACATATCATT
* * *
66661477 TCACCGGCATTACGCCTGCTAGGCATGAAGGCCCGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
66661520 TCACCAGCATGAAGCCTGCTAGGCACGAAGGCCCTAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
66661563 TCACTGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
66661606 TCACCGGCACT-AAGCCTGCTAGGCACGAAGGCCCGAATA
1 TCACCGGCA-TGAAGCCTGCTAGGCACGAAGGCCCGAATA
66661645 TAATACCAGC
Statistics
Matches: 113, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
43 113 1.00
ACGTcount: A:0.30, C:0.33, G:0.24, T:0.14
Consensus pattern (43 bp):
TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:66661691 original size:38 final size:38
Alignment explanation
Indices: 66661637--66661720 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
66661627 GGCACGAAGG
* * * *
66661637 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCAGGATTTAA
*
66661675 CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCAGGATTTAA
66661713 CCCGAATA
1 CCCGAATA
66661721 CACATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCAGGATTTAA
Found at i:66669994 original size:15 final size:15
Alignment explanation
Indices: 66669974--66670005 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
66669964 AAATAAAAGT
66669974 AAAGTCCAAAGTCCA
1 AAAGTCCAAAGTCCA
*
66669989 AAAGTCCATAGTCCA
1 AAAGTCCAAAGTCCA
66670004 AA
1 AA
66670006 TAGTTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.25, G:0.12, T:0.16
Consensus pattern (15 bp):
AAAGTCCAAAGTCCA
Found at i:66670430 original size:47 final size:47
Alignment explanation
Indices: 66670379--66670538 Score: 230
Period size: 47 Copynumber: 3.4 Consensus size: 47
66670369 TTATAGTAAT
*
66670379 GCAGATAAACTGTCTATAATCAAAATTGTGGACAAGCCACCAAAATC
1 GCAGATAAACTGTCAATAATCAAAATTGTGGACAAGCCACCAAAATC
* *
66670426 GCAGATATACTGTCAATAATCAAAATTGTGGAGAAGCCACCAAAATC
1 GCAGATAAACTGTCAATAATCAAAATTGTGGACAAGCCACCAAAATC
* * ** *
66670473 TCAGATATACTACCAATAATCAAAATTGTGGACAAACCACCAAAATC
1 GCAGATAAACTGTCAATAATCAAAATTGTGGACAAGCCACCAAAATC
* *
66670520 ACAGATAAACTGCCAATAA
1 GCAGATAAACTGTCAATAA
66670539 CTTCCATCTT
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 102 1.00
ACGTcount: A:0.45, C:0.21, G:0.13, T:0.21
Consensus pattern (47 bp):
GCAGATAAACTGTCAATAATCAAAATTGTGGACAAGCCACCAAAATC
Found at i:66676696 original size:15 final size:15
Alignment explanation
Indices: 66676676--66676711 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
66676666 AAGGGAAAGG
*
66676676 AATGATCCTGGTCTC
1 AATGATCATGGTCTC
*
66676691 AATGATCATGGTTTC
1 AATGATCATGGTCTC
66676706 AATGAT
1 AATGAT
66676712 AATCCAAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (15 bp):
AATGATCATGGTCTC
Found at i:66682998 original size:15 final size:15
Alignment explanation
Indices: 66682974--66683003 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66682964 ATAACCTTAT
66682974 ATGTTAATGAATTAA
1 ATGTTAATGAATTAA
*
66682989 ATGTTTATGAATTAA
1 ATGTTAATGAATTAA
66683004 GGGCATAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (15 bp):
ATGTTAATGAATTAA
Found at i:66684057 original size:43 final size:43
Alignment explanation
Indices: 66683912--66684061 Score: 164
Period size: 43 Copynumber: 3.5 Consensus size: 43
66683902 TGTGTTTTCG
* * * * *
66683912 TGTAAGACCACTTCTAGGACGTTAGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACGATGGCATCGA-TATTTGA-TTACA
*
66683956 TGTAAGACCACGTCTGGGACGATGGCATCG-TATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGATGGCATCGATATTTGATTACA
* *
66683998 TGTAAAACC-CTATCTGGGAC-AGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACGA-TGGCATCGATATTTGATTACA
66684041 TGTAAGACCACGTCTGGGACG
1 TGTAAGACCACGTCTGGGACG
66684062 TTAGCATTGT
Statistics
Matches: 89, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
41 2 0.02
42 29 0.33
43 31 0.35
44 27 0.30
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGATGGCATCGATATTTGATTACA
Found at i:66686292 original size:24 final size:24
Alignment explanation
Indices: 66686260--66686320 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
66686250 AAAAACTAAG
**
66686260 TGGCACTATGTGTCCGAGATTACA
1 TGGCACTATGTGTCCGAGAAAACA
* *
66686284 TGGCACTATGTGTGCGAGAAAACG
1 TGGCACTATGTGTCCGAGAAAACA
66686308 TGGCACTATGTGT
1 TGGCACTATGTGT
66686321 ACGAATAAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.28
Consensus pattern (24 bp):
TGGCACTATGTGTCCGAGAAAACA
Found at i:66692596 original size:26 final size:26
Alignment explanation
Indices: 66692525--66692596 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
66692515 TAGCCCAAGT
*
66692525 CAGTCA-TTTACCC-ACAAGGGCAAAA
1 CAGTCATTTTACCCTA-AAAGGCAAAA
* **
66692550 CAGTCATTTTACTCTTTAAGGCAAAA
1 CAGTCATTTTACCCTAAAAGGCAAAA
*
66692576 CGGTCATTTTACCCTAAAAGG
1 CAGTCATTTTACCCTAAAAGG
66692597 GTATTTTGGT
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
25 6 0.16
26 31 0.84
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (26 bp):
CAGTCATTTTACCCTAAAAGGCAAAA
Found at i:66692615 original size:27 final size:27
Alignment explanation
Indices: 66692585--66692743 Score: 203
Period size: 27 Copynumber: 5.9 Consensus size: 27
66692575 ACGGTCATTT
* * * *
66692585 TACCCTAAAAGGGTATTTTGGTAGTCC
1 TACCCTACAGGGGTATTTCGGTAATCC
*
66692612 TACCCTACAGGGGTATTTCGATAATCC
1 TACCCTACAGGGGTATTTCGGTAATCC
*
66692639 TACCCTATAGGGGTATTTCGGTAATCC
1 TACCCTACAGGGGTATTTCGGTAATCC
*
66692666 TACCCTACAGGGGTATTTCAGTAATCC
1 TACCCTACAGGGGTATTTCGGTAATCC
* * **
66692693 TACCCCATAGGGGTATTTCAATAATCC
1 TACCCTACAGGGGTATTTCGGTAATCC
*
66692720 TA-CCTACAGGGGTATTTTGGTAAT
1 TACCCTACAGGGGTATTTCGGTAAT
66692744 TTTACAAATT
Statistics
Matches: 115, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 17 0.15
27 98 0.85
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGGTAATCC
Found at i:66695569 original size:25 final size:25
Alignment explanation
Indices: 66695540--66695587 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
66695530 TTATAATATG
* * *
66695540 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATAACCATTTTACCCCTAGGTA
66695565 AAAATAACCATTTTACCCCTAGG
1 AAAATAACCATTTTACCCCTAGG
66695588 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.29
Consensus pattern (25 bp):
AAAATAACCATTTTACCCCTAGGTA
Found at i:66695651 original size:11 final size:11
Alignment explanation
Indices: 66695635--66695671 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
66695625 CATGATTTGG
66695635 CATGATATGCA
1 CATGATATGCA
66695646 CATGATATG--
1 CATGATATGCA
*
66695655 TATGATATGCA
1 CATGATATGCA
66695666 CATGAT
1 CATGAT
66695672 GTATTCAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.36
11 14 0.64
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (11 bp):
CATGATATGCA
Found at i:66695746 original size:25 final size:25
Alignment explanation
Indices: 66695718--66695812 Score: 147
Period size: 25 Copynumber: 3.8 Consensus size: 25
66695708 GAGGAAGTGC
* *
66695718 AAAAGGGCTATGCCCCAGTTT-TCCG
1 AAAAGGGCTTTGCCCCAGTTTAT-CA
66695743 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
66695768 AAAAGGGCTTTTCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
66695793 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
66695813 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
25 64 0.98
26 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:66695797 original size:50 final size:50
Alignment explanation
Indices: 66695718--66695837 Score: 147
Period size: 50 Copynumber: 2.4 Consensus size: 50
66695708 GAGGAAGTGC
*
66695718 AAAAGGGCTATGCCCCAGTTTTCCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTTCCAAAAAGGGCTTTGCCCCAGTTTATCA
* * *
66695768 AAAAGGGCTTTTCCCCAGTTTAT-CAAAAAGGGCTTTGCCCCAG-TTAT-T
1 AAAAGGGCTATGCCCCAGTTT-TCCAAAAAGGGCTTTGCCCCAGTTTATCA
*
66695816 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
66695838 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
48 5 0.08
49 10 0.17
50 44 0.73
51 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTTCCAAAAAGGGCTTTGCCCCAGTTTATCA
Found at i:66695825 original size:24 final size:24
Alignment explanation
Indices: 66695717--66695839 Score: 101
Period size: 25 Copynumber: 5.0 Consensus size: 24
66695707 GGAGGAAGTG
* *
66695717 CAAAAG-GGCTATGCCCCAGTTTT
1 CAAAAGAGGCTTTGCCCCAGTTAT
66695740 CCGAAAAG-GGCTTTGCCCCAGTTTAT
1 -C-AAAAGAGGCTTTGCCCCAG-TTAT
*
66695766 CAAAA-AGGGCTTTTCCCCAGTTTAT
1 CAAAAGA-GGCTTTGCCCCAG-TTAT
66695791 CAAAA-AGGGCTTTGCCCCAGTTAT
1 CAAAAGA-GGCTTTGCCCCAGTTAT
* **
66695815 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAGAGGCTTTGCC-CCAGTTAT
66695840 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 7, Indels: 11
0.83 0.07 0.11
Matches are distributed among these distances:
24 20 0.23
25 63 0.73
26 3 0.03
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (24 bp):
CAAAAGAGGCTTTGCCCCAGTTAT
Found at i:66696111 original size:31 final size:31
Alignment explanation
Indices: 66696032--66696112 Score: 117
Period size: 31 Copynumber: 2.6 Consensus size: 31
66696022 ACCGTTTACA
* * *
66696032 GTAAAGGCTTCGGGCCAATGATATGAATAAT
1 GTAAAGGCTTCGGCCCAGTGACATGAATAAT
* *
66696063 GAAAAGGCTTCGGCCCAGTGACATGGATAAT
1 GTAAAGGCTTCGGCCCAGTGACATGAATAAT
66696094 GTAAAGGCTTCGGCCCAGT
1 GTAAAGGCTTCGGCCCAGT
66696113 ATATGCTGAG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (31 bp):
GTAAAGGCTTCGGCCCAGTGACATGAATAAT
Found at i:66703576 original size:11 final size:10
Alignment explanation
Indices: 66703544--66703597 Score: 58
Period size: 11 Copynumber: 5.4 Consensus size: 10
66703534 CATAAGATTT
66703544 TGATAT-ACA
1 TGATATGACA
*
66703553 TGATTTGACA
1 TGATATGACA
66703563 TGATATGCACA
1 TGATATG-ACA
*
66703574 TGATATG-TA
1 TGATATGACA
66703583 TGATATGCACA
1 TGATATG-ACA
66703594 TGAT
1 TGAT
66703598 GTATTCATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
9 13 0.35
10 9 0.24
11 15 0.41
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:66703751 original size:24 final size:25
Alignment explanation
Indices: 66703669--66703738 Score: 140
Period size: 25 Copynumber: 2.8 Consensus size: 25
66703659 CAGCTTACTG
66703669 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
66703694 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
66703719 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
66703739 ATTAAAAGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:66704037 original size:31 final size:31
Alignment explanation
Indices: 66703958--66704038 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
66703948 ACCGTTTTCA
* *
66703958 GTAAAGGCTTCGGCCCAATGATATGAATAAT
1 GTAAAGGCTTCGGCCCAGTGACATGAATAAT
* *
66703989 GAAAAGGCTTCGGCCCAGTGACATGGATAAT
1 GTAAAGGCTTCGGCCCAGTGACATGAATAAT
66704020 GTAAAGGCTTCGGCCCAGT
1 GTAAAGGCTTCGGCCCAGT
66704039 ATATGCTGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (31 bp):
GTAAAGGCTTCGGCCCAGTGACATGAATAAT
Found at i:66708011 original size:29 final size:28
Alignment explanation
Indices: 66707978--66708033 Score: 94
Period size: 29 Copynumber: 2.0 Consensus size: 28
66707968 TGTAAGAGAA
66707978 ACTGATTTGGCTACGAGCCATGCATATCG
1 ACTGATTTGGCTACGAGCCATG-ATATCG
*
66708007 ACTGATTTGGCTTCGAGCCATGATATC
1 ACTGATTTGGCTACGAGCCATGATATC
66708034 AGTATTACGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 5 0.19
29 21 0.81
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (28 bp):
ACTGATTTGGCTACGAGCCATGATATCG
Found at i:66720715 original size:33 final size:33
Alignment explanation
Indices: 66720678--66720755 Score: 120
Period size: 33 Copynumber: 2.3 Consensus size: 33
66720668 CCAATCCATT
*
66720678 CATCACACAAATGCTCATAAGAGCTAATCTAAC
1 CATCACACAAATGCTCATAAGAGCTAATCCAAC
*
66720711 CATCACACCAATGCTCATAAGAGCTAATCCAAC
1 CATCACACAAATGCTCATAAGAGCTAATCCAAC
*
66720744 CAGCACATCAAA
1 CATCACA-CAAA
66720756 AATAGAGTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 37 0.93
34 3 0.08
ACGTcount: A:0.42, C:0.31, G:0.09, T:0.18
Consensus pattern (33 bp):
CATCACACAAATGCTCATAAGAGCTAATCCAAC
Found at i:66724482 original size:16 final size:16
Alignment explanation
Indices: 66724461--66724494 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
66724451 AAGAATCGTC
*
66724461 AAAAATTAAATAAAAT
1 AAAAATAAAATAAAAT
66724477 AAAAATAAAATAAAAT
1 AAAAATAAAATAAAAT
66724493 AA
1 AA
66724495 GATAGATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAAATAAAATAAAAT
Found at i:66730416 original size:15 final size:16
Alignment explanation
Indices: 66730396--66730425 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66730386 AGAGAAAGAA
66730396 AAAAAG-TAAATTAAT
1 AAAAAGTTAAATTAAT
66730411 AAAAAGTTAAATTAA
1 AAAAAGTTAAATTAA
66730426 ATTAAATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (16 bp):
AAAAAGTTAAATTAAT
Found at i:66733822 original size:31 final size:31
Alignment explanation
Indices: 66733787--66733849 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
66733777 CTTTTCATAA
**
66733787 TTCATATTTCATAACACTGGGCTGAAGCCTT
1 TTCATATTTCATAACACTGGGCCAAAGCCTT
**
66733818 TTCATATTTCATATTACTGGGCCAAAGCCTT
1 TTCATATTTCATAACACTGGGCCAAAGCCTT
66733849 T
1 T
66733850 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.38
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCAAAGCCTT
Found at i:66734107 original size:24 final size:24
Alignment explanation
Indices: 66734043--66734160 Score: 179
Period size: 23 Copynumber: 5.0 Consensus size: 24
66734033 GCTTTATCAT
*
66734043 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
66734068 ATAACTAGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66734091 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66734115 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66734138 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
66734161 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
23 40 0.46
24 40 0.46
25 7 0.08
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:66734116 original size:47 final size:47
Alignment explanation
Indices: 66734043--66734160 Score: 177
Period size: 47 Copynumber: 2.5 Consensus size: 47
66734033 GCTTTATCAT
*
66734043 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTAGGGCA-AAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTAGGGCATAAGCCC-TTTA
*
66734091 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTA
66734138 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
66734161 GCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
47 48 0.73
48 18 0.27
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTA
Found at i:66734235 original size:20 final size:20
Alignment explanation
Indices: 66734210--66734276 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
66734200 TTATGAATAC
66734210 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
66734230 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66734250 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66734270 ACCATGT
1 ATCATGT
66734277 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:66734241 original size:11 final size:11
Alignment explanation
Indices: 66734210--66734265 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
66734200 TTATGAATAC
66734210 ATCATGTGCAT
1 ATCATGTGCAT
*
66734221 ATCA--TACAT
1 ATCATGTGCAT
66734230 ATCATGTGCAT
1 ATCATGTGCAT
*
66734241 ATCA--TACAT
1 ATCATGTGCAT
*
66734250 GTCATGTGCAT
1 ATCATGTGCAT
66734261 ATCAT
1 ATCAT
66734266 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:66734355 original size:25 final size:25
Alignment explanation
Indices: 66734313--66734360 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
66734303 ATATTTAAAC
* * *
66734313 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
66734338 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
66734361 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:66736496 original size:47 final size:47
Alignment explanation
Indices: 66736433--66737054 Score: 940
Period size: 47 Copynumber: 13.3 Consensus size: 47
66736423 CCCTTCGGGA
* * *
66736433 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
66736480 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
66736527 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
66736574 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
66736621 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
66736668 CTTAT--C-T-CAT--ATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
66736709 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
66736756 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
66736803 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
66736852 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
66736899 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
66736946 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
66736993 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
66737040 CTTATCACATATATA
1 CTTATCACATATATA
66737055 TACACTTTCA
Statistics
Matches: 533, Mismatches: 31, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
41 36 0.07
43 2 0.00
44 1 0.00
45 3 0.01
46 2 0.00
47 445 0.83
49 43 0.08
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:66736861 original size:22 final size:22
Alignment explanation
Indices: 66736833--66736907 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
66736823 TTTCACATTC
66736833 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
66736855 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
66736879 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
66736902 ATCACA
1 ATCACA
66736908 CATACACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 17 0.45
23 5 0.13
24 5 0.13
25 11 0.29
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:66749483 original size:40 final size:40
Alignment explanation
Indices: 66749423--66749691 Score: 427
Period size: 40 Copynumber: 6.8 Consensus size: 40
66749413 GATGATAACG
66749423 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
66749463 GGGCTAAGTCCCGAATGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
66749503 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * *
66749543 GGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATTTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
66749583 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
**
66749623 GGGCTAAGT-CCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
66749662 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
66749692 AGCTATATCC
Statistics
Matches: 214, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
39 38 0.18
40 176 0.82
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:66754687 original size:25 final size:25
Alignment explanation
Indices: 66754659--66754706 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
66754649 TTTTTCATGA
*
66754659 TTTTTGAATTTTTAT-TTTTTAAATT
1 TTTTTAAATTTTT-TCTTTTTAAATT
66754684 TTTTTAAATTTTTTCTTTTTAAA
1 TTTTTAAATTTTTTCTTTTTAAA
66754707 AAATATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (25 bp):
TTTTTAAATTTTTTCTTTTTAAATT
Found at i:66754688 original size:10 final size:10
Alignment explanation
Indices: 66754673--66754697 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
66754663 TGAATTTTTA
66754673 TTTTTTAAAT
1 TTTTTTAAAT
66754683 TTTTTTAAAT
1 TTTTTTAAAT
66754693 TTTTT
1 TTTTT
66754698 CTTTTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTTAAAT
Found at i:66755330 original size:64 final size:65
Alignment explanation
Indices: 66755245--66755374 Score: 226
Period size: 64 Copynumber: 2.0 Consensus size: 65
66755235 AGCCATTGCA
66755245 ACTCTCATCGAAGGAGCCAATTCCTCATCTAGGGACAATAAAATACTTTTAT-ATATATATATAT
1 ACTCTCATCGAAGGAGCCAATTCCTCATCTAGGGACAATAAAATACTTTTATGATATATATATAT
* * *
66755309 ACTCTCATCGAATGAGTCAATTCCTCATCTAGGGACAATAAAATACTTTTATGGTATATATATAT
1 ACTCTCATCGAAGGAGCCAATTCCTCATCTAGGGACAATAAAATACTTTTATGATATATATATAT
66755374 A
1 A
66755375 TATAAAAAAA
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
64 50 0.81
65 12 0.19
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (65 bp):
ACTCTCATCGAAGGAGCCAATTCCTCATCTAGGGACAATAAAATACTTTTATGATATATATATAT
Found at i:66761424 original size:18 final size:19
Alignment explanation
Indices: 66761384--66761426 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
66761374 TATATGCAAA
* * *
66761384 AAAATATTATAAATTTTAT
1 AAAATATTAAAAATTATAG
66761403 AAAAT-TTAAAAATTATAG
1 AAAATATTAAAAATTATAG
66761421 AAAATA
1 AAAATA
66761427 ATGAATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAATATTAAAAATTATAG
Found at i:66761777 original size:10 final size:10
Alignment explanation
Indices: 66761761--66761804 Score: 58
Period size: 9 Copynumber: 4.6 Consensus size: 10
66761751 AGTTAAAAGG
66761761 ATTTTTAGAAT
1 ATTTTTA-AAT
66761772 -TTTTTAAAT
1 ATTTTTAAAT
66761781 ATTTTT-AAT
1 ATTTTTAAAT
66761790 ATTTTT-AAT
1 ATTTTTAAAT
66761799 ATTTTT
1 ATTTTT
66761805 TGGGTGTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
9 21 0.66
10 11 0.34
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTTTAAAT
Found at i:66764850 original size:22 final size:21
Alignment explanation
Indices: 66764825--66764866 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
66764815 TTTATTGTAC
66764825 TTGTTTCTTTTGAATATGAAAT
1 TTGTTTCTTTTGAAT-TGAAAT
* *
66764847 TTGTTTGTTTTGTATTGAAA
1 TTGTTTCTTTTGAATTGAAA
66764867 CAGTGTTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.24, C:0.02, G:0.17, T:0.57
Consensus pattern (21 bp):
TTGTTTCTTTTGAATTGAAAT
Found at i:66765344 original size:94 final size:95
Alignment explanation
Indices: 66765206--66765407 Score: 309
Period size: 94 Copynumber: 2.1 Consensus size: 95
66765196 ACCAATTGCG
*
66765206 ATATTAAATCAGCGAGCTATTCCAAGTTACAATCTTAAATCAACTAACTCAAATAAAATTGTTCA
1 ATATTAAATCAGCGAGCTATTCCAAGTTACAATATTAAATCAACTAACTCAAATAAAATTGTTCA
66765271 TGATCTT-AACCAAATGAACTTAGGTTACA
66 TGATCTTGAACCAAATGAACTTAGGTTACA
* * *
66765300 ATATTAAATTAGTGAGCTATT-CAGAGTTACGATATTAAATCAACTAACTCAAATAAAATTGTTC
1 ATATTAAATCAGCGAGCTATTCCA-AGTTACAATATTAAATCAACTAACTCAAATAAAATTGTTC
* * *
66765364 ATGATCTTGAATCAAATGAACTTAGGTTGCG
65 ATGATCTTGAACCAAATGAACTTAGGTTACA
*
66765395 ATCTTAAATCAGC
1 ATATTAAATCAGC
66765408 TAACCTTAAT
Statistics
Matches: 96, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
93 2 0.02
94 65 0.68
95 29 0.30
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (95 bp):
ATATTAAATCAGCGAGCTATTCCAAGTTACAATATTAAATCAACTAACTCAAATAAAATTGTTCA
TGATCTTGAACCAAATGAACTTAGGTTACA
Found at i:66765403 original size:225 final size:223
Alignment explanation
Indices: 66765011--66765519 Score: 644
Period size: 225 Copynumber: 2.3 Consensus size: 223
66765001 ATTAGCTATG
* * * * ***
66765011 ATCTTAAATTAGCTAGCTCAAATAAAATTGTTCATGGTCTTAAATCAAATGAACTTAAGTTGTGA
1 ATCTTAAATCAGCTAACTCAAATAAAATTGTTCATGATCTTAAATCAAATGAACTTAGGTTACAA
* * ** * * * *
66765076 TCTTAAATCAGCAAACTGTTTGGAGTTGCGATCTTAAATCAACGAACTCAAGTGAAATTGTTCAT
66 TATTAAATCAGCAAACTATTCAGAGTTACGATATTAAATCAACGAACTCAAATAAAATTGTTCAT
* *
66765141 GATATTGAATCAAATGAAATTAGGTTGCGATCTTAAATTAGCTAACCTTAATGATACCAATTGCG
131 GATATTGAATCAAATGAAATTAGGTTGCGATCTTAAATCAGCTAACCTTAATGATACCAACTGCG
*
66765206 ATATTAAATCAGCGAGCTATTCCAAGTTACA
196 ATATTAAATCAGCGAGCTATTCAAAG---CA
* *
66765237 ATCTTAAATCAACTAACTCAAATAAAATTGTTCATGATCTT-AACCAAATGAACTTAGGTTACAA
1 ATCTTAAATCAGCTAACTCAAATAAAATTGTTCATGATCTTAAATCAAATGAACTTAGGTTACAA
* ** * *
66765301 TATTAAATTAGTGAGCTATTCAGAGTTACGATATTAAATCAACTAACTCAAATAAAATTGTTCAT
66 TATTAAATCAGCAAACTATTCAGAGTTACGATATTAAATCAACGAACTCAAATAAAATTGTTCAT
* * * * *
66765366 GATCTTGAATCAAATGAACTTAGGTTGCGATCTTAAATCAGCTAACCTTAATGATATCAGCTGTG
131 GATATTGAATCAAATGAAATTAGGTTGCGATCTTAAATCAGCTAACCTTAATGATACCAACTGCG
* * * * *
66765431 ATATTAAATTAGTGAGTTGTTCAAAGCG
196 ATATTAAATCAGCGAGCTATTCAAAGCA
*
66765459 ATATTAAATCAGCTAACTCAAATAAAAATT-TTCATGATCTTAAATCAAATGAACTTAGGTT
1 ATCTTAAATCAGCTAACTCAAAT-AAAATTGTTCATGATCTTAAATCAAATGAACTTAGGTT
66765520 GTGATCTTAA
Statistics
Matches: 243, Mismatches: 38, Indels: 7
0.84 0.13 0.02
Matches are distributed among these distances:
222 33 0.14
223 24 0.10
225 149 0.61
226 37 0.15
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.33
Consensus pattern (223 bp):
ATCTTAAATCAGCTAACTCAAATAAAATTGTTCATGATCTTAAATCAAATGAACTTAGGTTACAA
TATTAAATCAGCAAACTATTCAGAGTTACGATATTAAATCAACGAACTCAAATAAAATTGTTCAT
GATATTGAATCAAATGAAATTAGGTTGCGATCTTAAATCAGCTAACCTTAATGATACCAACTGCG
ATATTAAATCAGCGAGCTATTCAAAGCA
Found at i:66765478 original size:128 final size:128
Alignment explanation
Indices: 66765298--66765624 Score: 415
Period size: 128 Copynumber: 2.5 Consensus size: 128
66765288 ACTTAGGTTA
* * *
66765298 CAATATTAAATTAGTGAGCTATTCAGAGTTACGATATTAAATCAACTAACTCAAATAAAATTGTT
1 CAATATTAAATTAGTGAGCTGTTCAAAG---CGATATTAAATCAGCTAACTCAAATAAAATTGTT
*
66765363 CATGATCTTGAATCAAATGAACTTAGGTTGCGATCTTAAATC-AGCTAACCTTAATGATATCAGC
63 CATGATCTTAAATCAAATGAACTTAGGTTGCGATCTTAAA-CGAGCTAACCTTAATGATATCAGC
66765427 TG
127 TG
** *
66765429 TGATATTAAATTAGTGAGTTGTTCAAAGCGATATTAAATCAGCTAACTCAAATAAAAATT-TTCA
1 CAATATTAAATTAGTGAGCTGTTCAAAGCGATATTAAATCAGCTAACTCAAAT-AAAATTGTTCA
* *
66765493 TGATCTTAAATCAAATGAACTTAGGTTGTGATCTTAAACGAGCTAATCTTAATGATATCAGCTG
65 TGATCTTAAATCAAATGAACTTAGGTTGCGATCTTAAACGAGCTAACCTTAATGATATCAGCTG
* ** * * * * *
66765557 CAATATTAAATCAACGAGCTGTTTGGAGATGCGGTCTTAAATCAGTTAACTCAAATAAAATTGTT
1 CAATATTAAATTAGTGAGCTG-TT-CA-AAGCGATATTAAATCAGCTAACTCAAATAAAATTGTT
66765622 CAT
63 CAT
66765625 TATAGATAAA
Statistics
Matches: 170, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
127 1 0.01
128 102 0.60
129 8 0.05
130 7 0.04
131 52 0.31
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (128 bp):
CAATATTAAATTAGTGAGCTGTTCAAAGCGATATTAAATCAGCTAACTCAAATAAAATTGTTCAT
GATCTTAAATCAAATGAACTTAGGTTGCGATCTTAAACGAGCTAACCTTAATGATATCAGCTG
Found at i:66765530 original size:64 final size:63
Alignment explanation
Indices: 66765329--66765538 Score: 153
Period size: 64 Copynumber: 3.3 Consensus size: 63
66765319 TTCAGAGTTA
* * *
66765329 CGATATTAAATCAACTAACTCAAATAAAATTGTTCATGATCTTGAATCAAATGAACTTAGGTTG
1 CGATCTTAAATCAGCTAACTCAAATAAAATT-TTCATGATCTTAAATCAAATGAACTTAGGTTG
* * * *** * * * * *
66765393 CGATCTTAAATCAGCTAAC-CTTAATGATATCAGCTGTGATATTAAAT-TAGTG-AGTT--GTTC
1 CGATCTTAAATCAGCTAACTC-AAATAAAATTTTC-ATGATCTTAAATCAAATGAACTTAGGTT-
66765453 AAAG
63 ---G
*
66765457 CGATATTAAATCAGCTAACTCAAATAAAAATTTTCATGATCTTAAATCAAATGAACTTAGGTTG
1 CGATCTTAAATCAGCTAACTCAAAT-AAAATTTTCATGATCTTAAATCAAATGAACTTAGGTTG
*
66765521 TGATCTTAAA-CGAGCTAA
1 CGATCTTAAATC-AGCTAA
66765539 TCTTAATGAT
Statistics
Matches: 105, Mismatches: 28, Indels: 26
0.66 0.18 0.16
Matches are distributed among these distances:
60 3 0.03
62 3 0.03
63 6 0.06
64 79 0.75
65 8 0.08
66 3 0.03
68 3 0.03
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (63 bp):
CGATCTTAAATCAGCTAACTCAAATAAAATTTTCATGATCTTAAATCAAATGAACTTAGGTTG
Found at i:66775697 original size:19 final size:19
Alignment explanation
Indices: 66775659--66775697 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
66775649 ATATATTAAT
*
66775659 AATATTTTATTAAATAAAA
1 AATATTTTAATAAATAAAA
66775678 AATATCTTTAATAAATAAAA
1 AATAT-TTTAATAAATAAAA
66775698 TTATATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
AATATTTTAATAAATAAAA
Found at i:66775706 original size:19 final size:20
Alignment explanation
Indices: 66775659--66775711 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
66775649 ATATATTAAT
*
66775659 AATAT-TTTATTAAATAAAA
1 AATATATTTAATAAATAAAA
*
66775678 AATATCTTTAATAAAT-AAA
1 AATATATTTAATAAATAAAA
*
66775697 ATTATATTT-ATAAAT
1 AATATATTTAATAAAT
66775712 TTTATTAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.20
19 15 0.50
20 9 0.30
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
AATATATTTAATAAATAAAA
Found at i:66780817 original size:41 final size:41
Alignment explanation
Indices: 66780772--66780859 Score: 142
Period size: 41 Copynumber: 2.1 Consensus size: 41
66780762 AAGAATATTG
66780772 TTGAATTGCACATACATGCCACTGTTTGTCCTTCGGTATCC-
1 TTGAATTGCACATACATGCCACTGTTTGTCCTTCGGTA-CCA
* *
66780813 TTGAATTGCACATACATGCCCCTGTTTGTGCTTCGGTACCA
1 TTGAATTGCACATACATGCCACTGTTTGTCCTTCGGTACCA
66780854 TTGAAT
1 TTGAAT
66780860 GTACTTTGTC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 2 0.05
41 42 0.95
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.36
Consensus pattern (41 bp):
TTGAATTGCACATACATGCCACTGTTTGTCCTTCGGTACCA
Found at i:66792255 original size:44 final size:44
Alignment explanation
Indices: 66792193--66792349 Score: 182
Period size: 43 Copynumber: 3.6 Consensus size: 44
66792183 TGTGATATTG
*
66792193 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATATGATTTACA
* *
66792237 TGTAAGACCATGTCTGGGACGTTGGTATCG-TATATGATTT-CA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGATTTACA
* *
66792279 TGTAAGACC-CTGTCTGGGACAG-TGGCATCAATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATATGATTTACA
* *
66792322 TGGAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
66792350 TGTACAATAT
Statistics
Matches: 97, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
42 29 0.30
43 39 0.40
44 29 0.30
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGATTTACA
Found at i:66799888 original size:39 final size:39
Alignment explanation
Indices: 66799821--66800233 Score: 628
Period size: 39 Copynumber: 10.5 Consensus size: 39
66799811 ACAAGGCATG
* * *
66799821 CGGGACTTTAAGCCCGAATATAATACTAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* * *
66799862 CGGGGCTTAGCCCGGATATAACACTAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
66799901 CGGGGCTTAGCCCGGATACAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
66799940 CGAGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
66799979 CGAGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
66800018 CGGGACTTAGCCCAGATATAACACCAGCACGAACGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
66800057 CGAGACTTAGCCTGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
66800096 CGGGACGTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
66800135 CGGGACGTAGCTCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
66800174 CGGGACGTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
66800213 CAGGACTTAGCCCAGATATAA
1 CGGGACTTAGCCCGGATATAA
66800234 TTCTCCATTA
Statistics
Matches: 347, Mismatches: 25, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
39 340 0.98
40 2 0.01
41 5 0.01
ACGTcount: A:0.30, C:0.30, G:0.23, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:66806774 original size:53 final size:53
Alignment explanation
Indices: 66806595--66806798 Score: 201
Period size: 53 Copynumber: 3.8 Consensus size: 53
66806585 AGGGTTTAAA
* * * * * *
66806595 GATACCAAGTAAGACTATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAG
* * * * * * * *
66806649 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAG
* * *
66806704 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAG
* * *
66806757 GATACCACGTAAGACCATGTCAAGACATGGTAATGGTAAGTT
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
66806799 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 45 0.38
54 34 0.29
55 40 0.34
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAG
Found at i:66811832 original size:46 final size:46
Alignment explanation
Indices: 66811782--66811955 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
66811772 GTTGAGCATT
* *
66811782 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTC
* * *
66811828 CGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--AATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CGTC
* * *
66811875 CGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGTGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTC
* * * *
66811921 CGAGCTCATTGAGTTGAGCCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66811956 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 60 0.57
47 30 0.29
48 2 0.02
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTC
Found at i:66811944 original size:93 final size:93
Alignment explanation
Indices: 66811777--66811947 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
66811767 GGATGGTTGA
* * * * *
66811777 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCATTGAGT
*
66811842 TGAGTCCGAGTTCATGAAATGTAACTAG
66 TGAGCCCGAGTTCATGAAATGTAACTAG
** *
66811870 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGTGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCATTGAGT
66811935 TGAGCCCGAGTTC
66 TGAGCCCGAGTTC
66811948 GCTTATGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGCCCGAGTTCATGAAATGTAACTAG
Found at i:66825602 original size:43 final size:43
Alignment explanation
Indices: 66825541--66825627 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
66825531 GAAAGTTTCG
*
66825541 AGAAATTGAAACAAATGTTGACTGAAGCGTCAATTTTAACCTT
1 AGAAATTGAAACAAATGTTGACTGAAGCATCAATTTTAACCTT
66825584 AGAAATTGAAACAAATGTTGACTGAAGCATCAATTTTAACCTT
1 AGAAATTGAAACAAATGTTGACTGAAGCATCAATTTTAACCTT
66825627 A
1 A
66825628 CTTGAATCGG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (43 bp):
AGAAATTGAAACAAATGTTGACTGAAGCATCAATTTTAACCTT
Found at i:66837104 original size:81 final size:79
Alignment explanation
Indices: 66836921--66837171 Score: 306
Period size: 82 Copynumber: 3.1 Consensus size: 79
66836911 TAATTATTCT
** * *
66836921 ATGAATTGCACATACGTGGTCCTATTTGTACTTCGGTACC-CTTGAATTGCATATAAGTGCCCCT
1 ATGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCTC-TGAATTGCATA-CA-TG-CCCT
66836985 GTTTGTACTTCAGTACCC
62 GTTTGTACTTCAGTACCC
* * *
66837003 CTGAATTGCACATACGTGCCCTTGTTTGTACTTCGGTACCTCTAAATTGCATAGCATGTCCCTGT
1 ATGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCTCTGAATTGCATA-CATG-CCCTGT
**
66837068 TTGTACTTTGGTACCC
64 TTGTACTTCAGTACCC
* *
66837084 ATGAATTGCACATGCTTGCCCCTGTTTGTACTTCGGTACCTCTGAATTGCACTTACATGCCTCTG
1 ATGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCTCTGAATTGCA--TACATGCC-CTG
66837149 TTTGTACTTCAGTACCC
63 TTTGTACTTCAGTACCC
*
66837166 TTGAAT
1 ATGAAT
66837172 CGCTCTTACG
Statistics
Matches: 146, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
81 70 0.48
82 73 0.50
83 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (79 bp):
ATGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCTCTGAATTGCATACATGCCCTGTTT
GTACTTCAGTACCC
Found at i:66837164 original size:122 final size:122
Alignment explanation
Indices: 66836945--66837164 Score: 325
Period size: 122 Copynumber: 1.8 Consensus size: 122
66836935 CGTGGTCCTA
* *
66836945 TTTGTACTTCGGTACCCTTGAATTGCATATAAGTGCCCCTGTTTGTACTTCAGTACCCCTGAATT
1 TTTGTACTTCGGTACCCATGAATTGCACATAAGTGCCCCTGTTTGTACTTCAGTACCCCTGAATT
* *
66837010 GCACATACGTGCCCTTGTTTGTACTTCGGTACCTCTAAATTGCATAGCATGTCCCTG
66 GCACATACATGCCCTTGTTTGTACTTCAGTACCTCTAAATTGCATAGCATGTCCCTG
* *** * *
66837067 TTTGTACTTTGGTACCCATGAATTGCACATGCTTGCCCCTGTTTGTACTTCGGTACCTCTGAATT
1 TTTGTACTTCGGTACCCATGAATTGCACATAAGTGCCCCTGTTTGTACTTCAGTACCCCTGAATT
*
66837132 GCACTTACATG-CCTCTGTTTGTACTTCAGTACC
66 GCACATACATGCCCT-TGTTTGTACTTCAGTACC
66837165 CTTGAATCGC
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
121 3 0.03
122 83 0.97
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (122 bp):
TTTGTACTTCGGTACCCATGAATTGCACATAAGTGCCCCTGTTTGTACTTCAGTACCCCTGAATT
GCACATACATGCCCTTGTTTGTACTTCAGTACCTCTAAATTGCATAGCATGTCCCTG
Found at i:66837192 original size:41 final size:41
Alignment explanation
Indices: 66836922--66837171 Score: 274
Period size: 41 Copynumber: 6.1 Consensus size: 41
66836912 AATTATTCTA
** *
66836922 TGAATTGCACATACGTGGTCCTATTTGTACTTCGGTACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * *
66836963 TGAATTGCATATAAGTGCCCCTGTTTGTACTTCAGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
*
66837004 TGAATTGCACATACGTGCCCTTGTTTGTACTTCGGTA-CCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * * *
66837044 CTAAATTG--CATAGCATGTCCCTGTTTGTACTTTGGTACCCA
1 -TGAATTGCACATA-CGTGCCCCTGTTTGTACTTCGGTACCCT
* *
66837085 TGAATTGCACATGCTTGCCCCTGTTTGTACTTCGGTA-CCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * *
66837125 CTGAATTGCACTTACATGCCTCTGTTTGTACTTCAGTACCCT
1 -TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
66837167 TGAAT
1 TGAAT
66837172 CGCTCTTACG
Statistics
Matches: 173, Mismatches: 29, Indels: 14
0.80 0.13 0.06
Matches are distributed among these distances:
39 4 0.02
40 30 0.17
41 133 0.77
42 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.37
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
Found at i:66853434 original size:19 final size:19
Alignment explanation
Indices: 66853405--66853450 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
66853395 TTCGGCAGAG
* *
66853405 AATAGAGAAGAAGAGAATGA
1 AATA-AGAAGAAAAAAATGA
66853425 AATAAGAAGAAAAAAATGA
1 AATAAGAAGAAAAAAATGA
66853444 AA-AAGAA
1 AATAAGAA
66853451 TAAGTGGAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 5 0.21
19 15 0.62
20 4 0.17
ACGTcount: A:0.70, C:0.00, G:0.22, T:0.09
Consensus pattern (19 bp):
AATAAGAAGAAAAAAATGA
Found at i:66854612 original size:19 final size:19
Alignment explanation
Indices: 66854574--66854617 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
66854564 TTAATTAACA
*
66854574 TTTAATTAATTATAATTAG
1 TTTAATTAATTATAAGTAG
66854593 TTTAATTAAATT-TAAGTAG
1 TTTAATT-AATTATAAGTAG
66854612 -TTAATT
1 TTTAATT
66854618 TTTAATCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 6 0.26
19 13 0.57
20 4 0.17
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (19 bp):
TTTAATTAATTATAAGTAG
Found at i:66857852 original size:16 final size:17
Alignment explanation
Indices: 66857821--66857855 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
66857811 CGTTTTTATT
66857821 ATTATTTTACTAATTTTA
1 ATTATTTTA-TAATTTTA
66857839 ATTATTTT-TAATTTTA
1 ATTATTTTATAATTTTA
66857855 A
1 A
66857856 CCTTTCGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
18 8 0.47
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTATTTTATAATTTTA
Found at i:66858448 original size:7 final size:6
Alignment explanation
Indices: 66858425--66858459 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
66858415 TTGTATTGAG
*
66858425 ATTTTA ATTTTA ATTTTAA ATTTTA ATTATA ATTT
1 ATTTTA ATTTTA ATTTT-A ATTTTA ATTTTA ATTT
66858460 AATGCATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (6 bp):
ATTTTA
Found at i:66858448 original size:13 final size:12
Alignment explanation
Indices: 66858425--66858459 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
66858415 TTGTATTGAG
66858425 ATTTTAATTTTA
1 ATTTTAATTTTA
66858437 ATTTTAAATTTTA
1 ATTTT-AATTTTA
*
66858450 ATTATAATTT
1 ATTTTAATTT
66858460 AATGCATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
ATTTTAATTTTA
Found at i:66866743 original size:16 final size:15
Alignment explanation
Indices: 66866716--66866749 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
66866706 ATAACTAGTA
*
66866716 TATAATTATATTTAT
1 TATAATTATATTAAT
66866731 TATAATATATATTAAT
1 TATAAT-TATATTAAT
66866747 TAT
1 TAT
66866750 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:66866883 original size:8 final size:8
Alignment explanation
Indices: 66866870--66866913 Score: 88
Period size: 8 Copynumber: 5.5 Consensus size: 8
66866860 AGAATTAACA
66866870 AATATTTT
1 AATATTTT
66866878 AATATTTT
1 AATATTTT
66866886 AATATTTT
1 AATATTTT
66866894 AATATTTT
1 AATATTTT
66866902 AATATTTT
1 AATATTTT
66866910 AATA
1 AATA
66866914 CTTATTATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
AATATTTT
Found at i:66871327 original size:9 final size:9
Alignment explanation
Indices: 66871313--66871342 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
66871303 TAATTTAACC
66871313 ACACAATTT
1 ACACAATTT
66871322 ACACAATTT
1 ACACAATTT
66871331 ACACAATTT
1 ACACAATTT
66871340 ACA
1 ACA
66871343 ATTTAATCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (9 bp):
ACACAATTT
Found at i:66876485 original size:15 final size:15
Alignment explanation
Indices: 66876465--66876494 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66876455 CATCCAGCCA
66876465 TTTGACAATCTCCTT
1 TTTGACAATCTCCTT
*
66876480 TTTGACAATTTCCTT
1 TTTGACAATCTCCTT
66876495 CATAATGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.23, G:0.07, T:0.50
Consensus pattern (15 bp):
TTTGACAATCTCCTT
Found at i:66879010 original size:17 final size:17
Alignment explanation
Indices: 66878990--66879040 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
66878980 TGGAAACATG
*
66878990 ATCTTCGAAGATATGTA
1 ATCTTAGAAGATATGTA
66879007 ATCTTAGATATGATATGTA
1 ATCTTAGA-A-GATATGTA
*
66879026 ATCTTAGAATATATG
1 ATCTTAGAAGATATG
66879041 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 12 0.40
18 2 0.07
19 16 0.53
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (17 bp):
ATCTTAGAAGATATGTA
Found at i:66879051 original size:23 final size:20
Alignment explanation
Indices: 66878999--66879056 Score: 73
Period size: 19 Copynumber: 2.8 Consensus size: 20
66878989 GATCTTCGAA
66878999 GATATGTAATCTTAG-ATAT
1 GATATGTAATCTTAGAATAT
66879018 GATATGTAATCTTAGAATATAT
1 GATATGTAATCTTAG-A-ATAT
*
66879040 GATTTTGTAATCTTAGA
1 GA-TATGTAATCTTAGA
66879057 GATTTGATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
19 15 0.44
22 7 0.21
23 12 0.35
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (20 bp):
GATATGTAATCTTAGAATAT
Found at i:66884177 original size:22 final size:21
Alignment explanation
Indices: 66884149--66884206 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
66884139 ATGCAATCTT
*
66884149 AGATATGATATGTAATCTTAGA
1 AGATATGATTTGTAATCTTA-A
*
66884171 AGATATGATTTTTTAATCTTAA
1 AGATATGA-TTTGTAATCTTAA
*
66884193 AGATTTGATTTGTA
1 AGATATGATTTGTA
66884207 GATACCCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 5 0.16
22 16 0.52
23 10 0.32
ACGTcount: A:0.36, C:0.03, G:0.16, T:0.45
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAA
Found at i:66886670 original size:21 final size:20
Alignment explanation
Indices: 66886646--66886685 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
66886636 GGGACTAAAC
*
66886646 TGAAAACTCAGAAATTTTTCG
1 TGAAAACT-AAAAATTTTTCG
*
66886667 TGAAATCTAAAAATTTTTC
1 TGAAAACTAAAAATTTTTC
66886686 TTTGGTGTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (20 bp):
TGAAAACTAAAAATTTTTCG
Found at i:66888684 original size:21 final size:21
Alignment explanation
Indices: 66888652--66888701 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
66888642 ATATAAATGA
*
66888652 ATTTAACA-TCAATTTAATCC
1 ATTTCACACTCAATTTAATCC
*
66888672 ATTTCACACTCAATTTAATTC
1 ATTTCACACTCAATTTAATCC
*
66888693 AATTCACAC
1 ATTTCACAC
66888702 CCTAAGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (21 bp):
ATTTCACACTCAATTTAATCC
Found at i:66891089 original size:28 final size:28
Alignment explanation
Indices: 66891047--66891177 Score: 190
Period size: 28 Copynumber: 4.7 Consensus size: 28
66891037 TGGCCCTTTT
*
66891047 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
66891075 GGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
66891103 GGGCCCAATCACATTCATATGGCCCATT
1 AGGCCCAATCACATTCATATGGCCCATC
* * * *
66891131 AGGTCTAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
66891159 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
66891178 GTCATGCAAT
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 91 1.00
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:66898856 original size:28 final size:28
Alignment explanation
Indices: 66898814--66898916 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
66898804 TGGCCCCTTT
* *
66898814 AGGCCCAATCTCATTCATATGGCCCATT
1 AGGCCCAATCACATTCATATGGCCCATC
* *
66898842 GGGCCCAATCACATTCATATGGACCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
66898870 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
66898898 AAGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
66898917 GTCATGCAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:66901314 original size:14 final size:14
Alignment explanation
Indices: 66901295--66901323 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
66901285 TTTAAGTCTA
66901295 TTTGTTAGTTATAT
1 TTTGTTAGTTATAT
66901309 TTTGTTAGTTATAT
1 TTTGTTAGTTATAT
66901323 T
1 T
66901324 GATATTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.66
Consensus pattern (14 bp):
TTTGTTAGTTATAT
Found at i:66901622 original size:6 final size:6
Alignment explanation
Indices: 66901611--66901646 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
66901601 TAATTTTTAA
66901611 ATATTT ATATTT ATATTT ATATTT ATATTT ATATTT
1 ATATTT ATATTT ATATTT ATATTT ATATTT ATATTT
66901647 TTGAATGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
ATATTT
Found at i:66902070 original size:30 final size:30
Alignment explanation
Indices: 66902034--66902093 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
66902024 TATTTTATTA
*
66902034 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* *
66902064 TTAATTTTATTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
66902094 CTTGTTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:66903289 original size:59 final size:59
Alignment explanation
Indices: 66903220--66903334 Score: 171
Period size: 59 Copynumber: 1.9 Consensus size: 59
66903210 TGATAATAAA
* * *
66903220 TATTATATATTGA-GAAACTCTGTGTAAAAAGG-AATTTTCAATTATATTTGGGAAAATAT
1 TATTATATATTGAGGAAA-ACTGTGT-AAAAGGAAATTCTCAATTATATTTGGCAAAATAT
66903279 TATTATATATTGAGGAAAACTGTGTAAAAGGAAATTCTCAATTATATTTGGCAAAA
1 TATTATATATTGAGGAAAACTGTGTAAAAGGAAATTCTCAATTATATTTGGCAAAA
66903335 AAACTAAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
58 6 0.12
59 41 0.80
60 4 0.08
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.37
Consensus pattern (59 bp):
TATTATATATTGAGGAAAACTGTGTAAAAGGAAATTCTCAATTATATTTGGCAAAATAT
Found at i:66907457 original size:17 final size:17
Alignment explanation
Indices: 66907435--66907486 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
66907425 TCATAACTTT
66907435 TTTTCTGATTTTTTTTA
1 TTTTCTGATTTTTTTTA
* *
66907452 TTTTCTCATTTTTTCTA
1 TTTTCTGATTTTTTTTA
* *
66907469 TTTTTTGAATTTATTTTA
1 TTTTCTG-ATTTTTTTTA
66907487 AAAAATAGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
17 20 0.71
18 8 0.29
ACGTcount: A:0.15, C:0.08, G:0.04, T:0.73
Consensus pattern (17 bp):
TTTTCTGATTTTTTTTA
Found at i:66907474 original size:9 final size:9
Alignment explanation
Indices: 66907433--66907474 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
66907423 TTTCATAACT
66907433 TTTTTTCTGA
1 TTTTTTCT-A
*
66907443 TTTTTTTTA
1 TTTTTTCTA
*
66907452 TTTTCTC-A
1 TTTTTTCTA
66907460 TTTTTTCTA
1 TTTTTTCTA
66907469 TTTTTT
1 TTTTTT
66907475 GAATTTATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
8 7 0.26
9 13 0.48
10 7 0.26
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.79
Consensus pattern (9 bp):
TTTTTTCTA
Found at i:66909575 original size:24 final size:25
Alignment explanation
Indices: 66909548--66909596 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
66909538 TATTTTTTAT
*
66909548 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
66909572 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
66909597 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:66909589 original size:25 final size:23
Alignment explanation
Indices: 66909560--66909624 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
66909550 AATAAAAAAC
*
66909560 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
66909585 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
66909606 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAACAAATA
66909625 AATAATGGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 9 0.24
20 8 0.22
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:66909623 original size:19 final size:20
Alignment explanation
Indices: 66909586--66909624 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
66909576 TCAAATACAT
66909586 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
66909606 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
66909625 AATAATGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:66914067 original size:105 final size:105
Alignment explanation
Indices: 66913928--66914186 Score: 353
Period size: 105 Copynumber: 2.5 Consensus size: 105
66913918 ATTAATGCAC
* * * *
66913928 TATAGGTAACAACATTAGGCTCAATG-TTATGCTTTATTATTGCGTCAACAAT-ATCTTCAGCTT
1 TATACGTAACAACATCAGGCTCAATGCCT-TGCTTTATTATTGTGTCAAC-ATCATCTTCAGCTT
* * *
66913991 CAGAAACCATTCCTTCCCTGCAAGGCGCATCAACCAATATAT
64 CAGAAACCATTCCTTCCCTACAAGGCACATCAACCAATATAA
* * * * *
66914033 TATATGTAACAACATCGGGCTCAATGCCTTGCTTTATCATTGTGCCAACATCATCTTTAGCTTCA
1 TATACGTAACAACATCAGGCTCAATGCCTTGCTTTATTATTGTGTCAACATCATCTTCAGCTTCA
*
66914098 GAAACCATTCCTTCCCTACAATGCACATCAACCAATATAA
66 GAAACCATTCCTTCCCTACAAGGCACATCAACCAATATAA
66914138 TATACGTAACAACATCAGGCTCAATGCCTTGCTTT-TTCATTGTGTCAAC
1 TATACGTAACAACATCAGGCTCAATGCCTTGCTTTATT-ATTGTGTCAAC
66914187 GGTATCTATT
Statistics
Matches: 135, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
104 3 0.02
105 131 0.97
106 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (105 bp):
TATACGTAACAACATCAGGCTCAATGCCTTGCTTTATTATTGTGTCAACATCATCTTCAGCTTCA
GAAACCATTCCTTCCCTACAAGGCACATCAACCAATATAA
Found at i:66914864 original size:3 final size:3
Alignment explanation
Indices: 66914856--66914883 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
66914846 CAATGGTATT
66914856 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
66914884 ATAAAAGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:66918540 original size:39 final size:38
Alignment explanation
Indices: 66918486--66918582 Score: 124
Period size: 38 Copynumber: 2.6 Consensus size: 38
66918476 ATGGGTAAAA
* **
66918486 AATCTCATTTCTAAATTTATTTGTTGACATTTTATTTAT
1 AATCTCGTTTCTAAATTTATTT-TAAACATTTTATTTAT
* *
66918525 AATCTCGTTTCTAAATTTATTTTAAATATTTTATTTTT
1 AATCTCGTTTCTAAATTTATTTTAAACATTTTATTTAT
*
66918563 AAACTCGTTTCT-AATTTATT
1 AATCTCGTTTCTAAATTTATT
66918583 AAATATTTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
37 8 0.15
38 23 0.44
39 21 0.40
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.57
Consensus pattern (38 bp):
AATCTCGTTTCTAAATTTATTTTAAACATTTTATTTAT
Found at i:66919863 original size:13 final size:14
Alignment explanation
Indices: 66919845--66919875 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
66919835 AATTTTCAAG
66919845 TACAAAAAA-AAGT
1 TACAAAAAATAAGT
66919858 TACAAAAAATAAGT
1 TACAAAAAATAAGT
66919872 TACA
1 TACA
66919876 TATACATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.65, C:0.10, G:0.06, T:0.19
Consensus pattern (14 bp):
TACAAAAAATAAGT
Found at i:66921477 original size:49 final size:50
Alignment explanation
Indices: 66921310--66921557 Score: 293
Period size: 49 Copynumber: 4.8 Consensus size: 50
66921300 GATAATAACA
* ** *
66921310 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGT-CTCGG
* * * *
66921361 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
*
66921411 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT-GTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
* * *
66921460 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--G-TC-T-CGG
*
66921515 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
66921558 TTACCCAAAT
Statistics
Matches: 169, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
49 46 0.27
50 45 0.27
51 33 0.20
52 1 0.01
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
Found at i:66921495 original size:99 final size:104
Alignment explanation
Indices: 66921309--66921557 Score: 348
Period size: 99 Copynumber: 2.4 Consensus size: 104
66921299 TGATAATAAC
**
66921309 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
66921374 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
66921411 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT-GT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
66921473 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
66921515 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
66921558 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
98 1 0.01
99 46 0.35
100 3 0.02
101 36 0.27
102 3 0.02
103 1 0.01
104 2 0.02
105 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:66921673 original size:13 final size:13
Alignment explanation
Indices: 66921652--66921683 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
66921642 GCTTGGATCA
*
66921652 TCATCAAATAAAT
1 TCATAAAATAAAT
66921665 TCATAAAATAAAT
1 TCATAAAATAAAT
66921678 TCATAA
1 TCATAA
66921684 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:66921929 original size:30 final size:30
Alignment explanation
Indices: 66921894--66921951 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
66921884 CCTCGACTCT
*
66921894 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
66921924 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
66921952 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:66929031 original size:50 final size:50
Alignment explanation
Indices: 66928907--66929155 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
66928897 GATAATAACA
* * ** * *
66928907 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
66928958 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
66929008 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
66929058 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
66929113 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
66929156 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:66929085 original size:100 final size:104
Alignment explanation
Indices: 66928906--66929155 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
66928896 TGATAATAAC
**
66928906 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
66928971 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
66929008 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
66929071 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
66929113 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
66929156 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:66929271 original size:13 final size:13
Alignment explanation
Indices: 66929250--66929281 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
66929240 GCTTGGATCA
*
66929250 TCATCAAATAAAT
1 TCATAAAATAAAT
66929263 TCATAAAATAAAT
1 TCATAAAATAAAT
66929276 TCATAA
1 TCATAA
66929282 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:66929528 original size:30 final size:30
Alignment explanation
Indices: 66929493--66929550 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
66929483 CCTCGACTCT
*
66929493 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
66929523 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
66929551 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:66930580 original size:12 final size:12
Alignment explanation
Indices: 66930565--66930589 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
66930555 AGCTAAAAAA
66930565 TTGTATAAAGAT
1 TTGTATAAAGAT
66930577 TTGTATAAAGAT
1 TTGTATAAAGAT
66930589 T
1 T
66930590 AAATTGATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (12 bp):
TTGTATAAAGAT
Found at i:66939612 original size:59 final size:59
Alignment explanation
Indices: 66939543--66939661 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
66939533 AAGCAAAATA
66939543 TATCTCTTAAGGAATAGTGGTGGGATAGTAGAGATAAGCAAGCAGGGCACTAAGTCTCT
1 TATCTCTTAAGGAATAGTGGTGGGATAGTAGAGATAAGCAAGCAGGGCACTAAGTCTCT
66939602 TATCTCTTAAGGAATAGTGGTGGGATAGTAGAGATAAGCAAGCAGGGCACTAAGTCTCT
1 TATCTCTTAAGGAATAGTGGTGGGATAGTAGAGATAAGCAAGCAGGGCACTAAGTCTCT
66939661 T
1 T
66939662 TCCATTTGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (59 bp):
TATCTCTTAAGGAATAGTGGTGGGATAGTAGAGATAAGCAAGCAGGGCACTAAGTCTCT
Found at i:66941463 original size:17 final size:17
Alignment explanation
Indices: 66941422--66941463 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
66941412 CAGGTATTGA
66941422 GATCAAA-ACCACCAAT
1 GATCAAACACCACCAAT
* **
66941438 AATGGAACACCACCAAT
1 GATCAAACACCACCAAT
66941455 GATCAAACA
1 GATCAAACA
66941464 TATTTGCCCA
Statistics
Matches: 19, Mismatches: 6, Indels: 1
0.73 0.23 0.04
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.50, C:0.29, G:0.10, T:0.12
Consensus pattern (17 bp):
GATCAAACACCACCAAT
Found at i:66946916 original size:24 final size:24
Alignment explanation
Indices: 66946887--66946977 Score: 71
Period size: 24 Copynumber: 3.7 Consensus size: 24
66946877 AATAAAAAAC
66946887 AAATAATAATAAAATAAATGAAAT
1 AAATAATAATAAAATAAATGAAAT
* *
66946911 AAATAAAAATAAAAGAACA--ATAAT
1 AAATAATAATAAAATAA-ATGA-AAT
* *
66946935 TAATAATAATAAACAAAGAATGAAAAT
1 AAATAATAATAAA-ATA-AATG-AAAT
66946962 AAAATAA-AATAAAATA
1 -AAATAATAATAAAATA
66946978 CAGAAAAAGA
Statistics
Matches: 52, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
23 1 0.02
24 29 0.56
25 4 0.08
26 3 0.06
27 9 0.17
28 6 0.12
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (24 bp):
AAATAATAATAAAATAAATGAAAT
Found at i:66946975 original size:10 final size:10
Alignment explanation
Indices: 66946877--66946977 Score: 64
Period size: 11 Copynumber: 9.4 Consensus size: 10
66946867 ATTAAAGCAG
*
66946877 AATAAAAAACA
1 AATAAAATA-A
66946888 AATAATAATAA
1 AATAA-AATAA
*
66946899 AAT-AAATGA
1 AATAAAATAA
66946908 AAT-AAATAAA
1 AATAAAAT-AA
*
66946918 AATAAAAGAA
1 AATAAAATAA
66946928 CAATAATTAATAA
1 -AATAA--AATAA
66946941 TAATAAACA-AA
1 -AATAAA-ATAA
66946952 GAATGAAAATAA
1 -AAT-AAAATAA
66946964 AATAAAATAA
1 AATAAAATAA
66946974 AATA
1 AATA
66946978 CAGAAAAAGA
Statistics
Matches: 74, Mismatches: 7, Indels: 19
0.74 0.07 0.19
Matches are distributed among these distances:
9 11 0.15
10 18 0.24
11 27 0.36
12 9 0.12
13 9 0.12
ACGTcount: A:0.73, C:0.03, G:0.04, T:0.20
Consensus pattern (10 bp):
AATAAAATAA
Found at i:66968705 original size:25 final size:25
Alignment explanation
Indices: 66968654--66968705 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
66968644 GTACGAGTTT
*
66968654 AAAATAAGTGTTTTTTTTAACATTA
1 AAAATAAGTGTTTTTTTTAACAATA
*
66968679 AAAATAAGTGTTTTTTTTAATAATA
1 AAAATAAGTGTTTTTTTTAACAATA
66968704 AA
1 AA
66968706 TTTTTAATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.46
Consensus pattern (25 bp):
AAAATAAGTGTTTTTTTTAACAATA
Found at i:66969192 original size:16 final size:17
Alignment explanation
Indices: 66969156--66969197 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
66969146 TTAAGTGTGC
66969156 ATAATAAAATTAAAATAT
1 ATAA-AAAATTAAAATAT
*
66969174 ATAAAAAATTAATAT-T
1 ATAAAAAATTAAAATAT
66969190 ATAAAAAA
1 ATAAAAAA
66969198 ATCAAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.39
17 10 0.43
18 4 0.17
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
ATAAAAAATTAAAATAT
Found at i:66969198 original size:17 final size:16
Alignment explanation
Indices: 66969156--66969206 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 16
66969146 TTAAGTGTGC
*
66969156 ATAATAAAATTAAAAT
1 ATAAAAAAATTAAAAT
*
66969172 ATATAAAAAATTAATATT
1 ATA-AAAAAATTAA-AAT
*
66969190 ATAAAAAAATCAAAAT
1 ATAAAAAAATTAAAAT
66969206 A
1 A
66969207 AAACTTTGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 6 0.21
17 18 0.62
18 5 0.17
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (16 bp):
ATAAAAAAATTAAAAT
Found at i:66970140 original size:15 final size:15
Alignment explanation
Indices: 66970120--66970171 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
66970110 ATTACAAAAA
66970120 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
66970135 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
66970154 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
66970169 ATT
1 ATT
66970172 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:66970235 original size:13 final size:14
Alignment explanation
Indices: 66970199--66970245 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
66970189 ATAATATGTG
*
66970199 AATAATATTATTTAA
1 AATATTATT-TTTAA
66970214 AATCATTATTTTTAA
1 AAT-ATTATTTTTAA
*
66970229 AAT-TTATTATTAA
1 AATATTATTTTTAA
66970242 AATA
1 AATA
66970246 AAACTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 12 0.43
15 11 0.39
16 5 0.18
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
AATATTATTTTTAA
Found at i:66970237 original size:16 final size:16
Alignment explanation
Indices: 66970204--66970244 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 16
66970194 ATGTGAATAA
66970204 TATTATTTAAAATCAT
1 TATTATTTAAAATCAT
66970220 TATT-TTTAAAAT--T
1 TATTATTTAAAATCAT
66970233 TATTA-TTAAAAT
1 TATTATTTAAAAT
66970245 AAAACTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 12 0.50
15 8 0.33
16 4 0.17
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
TATTATTTAAAATCAT
Found at i:66970292 original size:22 final size:20
Alignment explanation
Indices: 66970250--66970293 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
66970240 AAAATAAAAC
*
66970250 TAAAATATTAAATAATTTAT
1 TAAAATAATAAATAATTTAT
66970270 TAAAATAATAAACTATATTTAT
1 TAAAATAATAAA-TA-ATTTAT
66970292 TA
1 TA
66970294 TATTAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.52
21 2 0.10
22 8 0.38
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAAATAATAAATAATTTAT
Found at i:66970758 original size:3 final size:3
Alignment explanation
Indices: 66970750--66970803 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
66970740 TGAATTTAAG
66970750 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
66970798 TAT TAT
1 TAT TAT
66970804 ATCCCTTATA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Done.