Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 202 of 343
Found at i:66973126 original size:30 final size:30
Alignment explanation
Indices: 66973082--66973140 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
66973072 TCCGAGCCTT
*
66973082 GGGGAAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* *
66973112 GGGGCAAAAA-TGTAATTTTGCAAAAGTTT
1 GGGG-AAAAAGTGTAAATATGCAAAAGTTT
66973141 GAGTTAAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.29
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:66975290 original size:16 final size:16
Alignment explanation
Indices: 66975269--66975299 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66975259 ATAAATTTGA
66975269 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
66975285 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
66975300 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:66981543 original size:10 final size:10
Alignment explanation
Indices: 66981528--66981552 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
66981518 AAGTTTTCGA
66981528 ATATACATAT
1 ATATACATAT
66981538 ATATACATAT
1 ATATACATAT
66981548 ATATA
1 ATATA
66981553 TATACATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATACATAT
Found at i:66986325 original size:24 final size:26
Alignment explanation
Indices: 66986296--66986344 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
66986286 CTTGTTTTAA
* *
66986296 TATTTG-TTT-TTATGTTTTTAAATG
1 TATTTGATTTATTATATTTTAAAATG
66986320 TATTTGATTTATTATATTTTAAAAT
1 TATTTGATTTATTATATTTTAAAAT
66986345 TTTTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (26 bp):
TATTTGATTTATTATATTTTAAAATG
Found at i:66987513 original size:5 final size:5
Alignment explanation
Indices: 66987503--66987529 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
66987493 AATCTGTGTT
66987503 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
66987530 CACAAATTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:66994803 original size:22 final size:23
Alignment explanation
Indices: 66994757--66994818 Score: 92
Period size: 22 Copynumber: 2.7 Consensus size: 23
66994747 ATTTGAAATG
66994757 TTTTATAATATATATTTTTTAAAA
1 TTTTA-AATATATATTTTTTAAAA
66994781 TTTTAAATATATATTTTTT-AAA
1 TTTTAAATATATATTTTTTAAAA
*
66994803 TATTAAATATAT-TTTT
1 TTTTAAATATATATTTT
66994819 AATAATATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
21 4 0.11
22 14 0.38
23 14 0.38
24 5 0.14
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTAAATATATATTTTTTAAAA
Found at i:66994829 original size:20 final size:20
Alignment explanation
Indices: 66994766--66994826 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 20
66994756 GTTTTATAAT
*
66994766 ATATATTTTTTAAAATTTTAAA
1 ATATA-TTTTTAAAATATT-AA
*
66994788 TATATATTTTTTAAATATTAA
1 -ATATATTTTTAAAATATTAA
66994809 ATATATTTTTAATAATAT
1 ATATATTTTTAA-AATAT
66994827 AAAAAATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.32
21 7 0.21
22 11 0.32
23 5 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
ATATATTTTTAAAATATTAA
Found at i:66994952 original size:11 final size:11
Alignment explanation
Indices: 66994882--66994952 Score: 58
Period size: 10 Copynumber: 6.5 Consensus size: 11
66994872 TAGTTTTATA
66994882 ATATTTTAAAT
1 ATATTTTAAAT
*
66994893 AT-TTTTTAAT
1 ATATTTTAAAT
* *
66994903 TTATTTTATA-
1 ATATTTTAAAT
66994913 ATATTTTAAATT
1 ATATTTTAAA-T
66994925 ATGATTTGTAAAT
1 AT-ATTT-TAAAT
*
66994938 -TATTTTAAAG
1 ATATTTTAAAT
66994948 ATATT
1 ATATT
66994953 CAAATCTTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
10 20 0.43
11 15 0.32
12 3 0.06
13 5 0.11
14 4 0.09
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (11 bp):
ATATTTTAAAT
Found at i:66995065 original size:16 final size:16
Alignment explanation
Indices: 66995039--66995086 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
66995029 AATAAAAAAT
66995039 ATTTA-TTAAAAATAA
1 ATTTATTTAAAAATAA
*
66995054 ATTTATTTAAAAATAT
1 ATTTATTTAAAAATAA
* *
66995070 ATATATTAAAAAATAA
1 ATTTATTTAAAAATAA
66995086 A
1 A
66995087 AATTTAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
15 5 0.18
16 23 0.82
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATTTATTTAAAAATAA
Found at i:66995611 original size:40 final size:40
Alignment explanation
Indices: 66995567--66995644 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
66995557 GTGTTAGTTA
66995567 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATTT
1 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATTT
66995607 TAATTTTTTAATTTTAGTACACATTCATAAATTTATAT
1 TAATTTTTTAATTTTAGTACACATTCATAAATTTATAT
66995645 ACTTAATATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (40 bp):
TAATTTTTTAATTTTAGTACACATTCATAAATTTATATTT
Found at i:66995639 original size:20 final size:20
Alignment explanation
Indices: 66995576--66995640 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
66995566 ATAATTTTTT
66995576 AATTTTAGTACACATTCATA
1 AATTTTAGTACACATTCATA
* ** ** *
66995596 AATTTATATTTTA-ATTTTTT
1 AATTT-TAGTACACATTCATA
66995616 AATTTTAGTACACATTCATA
1 AATTTTAGTACACATTCATA
66995636 AATTT
1 AATTT
66995641 ATATACTTAA
Statistics
Matches: 31, Mismatches: 12, Indels: 4
0.66 0.26 0.09
Matches are distributed among these distances:
19 4 0.13
20 23 0.74
21 4 0.13
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (20 bp):
AATTTTAGTACACATTCATA
Found at i:66995662 original size:40 final size:40
Alignment explanation
Indices: 66995575--66995662 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 40
66995565 TATAATTTTT
* * *
66995575 TAATTTTAGTACACATTCATAAATTTATATTTTAATTTTT
1 TAATTTTAGTACACATTCATAAATTTATATCTTAATTATA
66995615 TAATTTTAGTACACATTCATAAATTTATATACTTAA-TATA
1 TAATTTTAGTACACATTCATAAATTTATAT-CTTAATTATA
*
66995655 TATTTTTA
1 TAATTTTA
66995663 ATAGGTAAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
40 39 0.91
41 4 0.09
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (40 bp):
TAATTTTAGTACACATTCATAAATTTATATCTTAATTATA
Found at i:66995925 original size:16 final size:16
Alignment explanation
Indices: 66995904--66995939 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
66995894 AAAACTTAAA
66995904 AAAATTTAAATATATT
1 AAAATTTAAATATATT
*
66995920 AAAATTTAAATATGTT
1 AAAATTTAAATATATT
66995936 AAAA
1 AAAA
66995940 GAAAATGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
AAAATTTAAATATATT
Found at i:66996001 original size:79 final size:77
Alignment explanation
Indices: 66995907--66996053 Score: 201
Period size: 77 Copynumber: 1.9 Consensus size: 77
66995897 ACTTAAAAAA
* **
66995907 ATTTAAATATATTAAAA-TTT-AA-ATATGTTAAAAGAAAATGTTGAGTATAACCAATTTTAATT
1 ATTTAAATATATTAAAATTTTGAACATAT-TT--AA-AAAAT-TTAAGTATAACCAATTTTAAAA
66995969 TTTTAATAGTTGAATAT
61 TTTTAATAGTTGAATAT
66995986 ATTTAAATATATTAAAATTTTGAACATATTTAAAAAATTTAAGTATAACCAATTTTAAAATTTTA
1 ATTTAAATATATTAAAATTTTGAACATATTTAAAAAATTTAAGTATAACCAATTTTAAAATTTTA
66996051 ATA
66 ATA
66996054 TATTTTTTTA
Statistics
Matches: 62, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
77 27 0.44
78 5 0.08
79 19 0.31
80 3 0.05
81 4 0.06
82 4 0.06
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (77 bp):
ATTTAAATATATTAAAATTTTGAACATATTTAAAAAATTTAAGTATAACCAATTTTAAAATTTTA
ATAGTTGAATAT
Found at i:66997920 original size:30 final size:30
Alignment explanation
Indices: 66997884--66997955 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
66997874 GTCGCAGAGC
* * *
66997884 AGTTCATATCACTCAGACATTGGCGGTTCA
1 AGTTCATATCACACAGACATGGGCGATTCA
*
66997914 AGTTCATATCACACAGACATGGGCGATTCG
1 AGTTCATATCACACAGACATGGGCGATTCA
66997944 AGTTCATATCAC
1 AGTTCATATCAC
66997956 CCGAATATAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (30 bp):
AGTTCATATCACACAGACATGGGCGATTCA
Found at i:67001502 original size:24 final size:24
Alignment explanation
Indices: 67001461--67001547 Score: 65
Period size: 22 Copynumber: 3.7 Consensus size: 24
67001451 AGGTCATATC
*
67001461 TTTAAAAATAAAATATTTTAAATAA
1 TTTAAAAATAAAATATTTAAAAT-A
* *
67001486 TTTAAAAATCATA-ATTTAAAATA
1 TTTAAAAATAAAATATTTAAAATA
**
67001509 -TTATAAAAT-AAAT-TAAAAAATA
1 TTTA-AAAATAAAATATTTAAAATA
*
67001531 TTTAAAATTTAAAATAT
1 TTTAAAA-ATAAAATAT
67001548 ACATTTAAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
22 15 0.31
23 10 0.20
24 12 0.24
25 12 0.24
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (24 bp):
TTTAAAAATAAAATATTTAAAATA
Found at i:67001517 original size:10 final size:10
Alignment explanation
Indices: 67001502--67001567 Score: 50
Period size: 10 Copynumber: 6.5 Consensus size: 10
67001492 AATCATAATT
67001502 TAAAATATTA
1 TAAAATATTA
67001512 TAAAATAAATTA
1 TAAAAT--ATTA
*
67001524 AAAAATATT-
1 TAAAATATTA
67001533 TAAAAT-TTA
1 TAAAATATTA
67001542 -AAATATACATT-
1 TAAA-AT--ATTA
67001553 TAAAATATTA
1 TAAAATATTA
67001563 TAAAA
1 TAAAA
67001568 CTAATAATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 18
0.69 0.03 0.28
Matches are distributed among these distances:
8 5 0.11
9 10 0.22
10 14 0.31
11 2 0.04
12 14 0.31
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (10 bp):
TAAAATATTA
Found at i:67001561 original size:134 final size:132
Alignment explanation
Indices: 67001406--67001675 Score: 361
Period size: 134 Copynumber: 2.0 Consensus size: 132
67001396 ATAATTTGTA
*
67001406 AAAATTATATATTTAAAATATTATAAAACAAATAATAAATGTGAAAGGTCATATCTTTAAAA-A-
1 AAAATTATACATTTAAAATATTATAAAACAAATAATAAATGTGAAAGGTCATATCTTTAAAATAT
67001469 TAAAATATTTTAAATAATTTAAAAATCATAATTTAAAATATTATAAAATAAATTAAAAAATATTT
66 TAAAATATTTTAAATAA-TTAAAAAT-AT-ATTTAAAAT-TTA-AAAATAAATTAAAAAATATTT
67001534 AAAATTT
126 AAAATTT
* *
67001541 AAAA-TATACATTTAAAATATTATAAAACTAATAATAAATTTGAAAGGTCATATCTTTAAAATAT
1 AAAATTATACATTTAAAATATTATAAAACAAATAATAAATGTGAAAGGTCATATCTTTAAAATAT
* * * * ** * *
67001605 TTAAATATTTTATATTATTAAAAATATATTTAATATTTAAAAAT-AATTCCAAAATATAT-ATAT
66 TAAAATATTTTAAATAATTAAAAATATATTTAAAATTTAAAAATAAATTAAAAAATATTTAAAAT
67001668 TT
131 TT
67001670 AAAATT
1 AAAATT
67001676 TTAAAAATAT
Statistics
Matches: 121, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
129 9 0.07
130 13 0.11
131 5 0.04
132 3 0.02
133 8 0.07
134 56 0.46
135 13 0.11
136 14 0.12
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (132 bp):
AAAATTATACATTTAAAATATTATAAAACAAATAATAAATGTGAAAGGTCATATCTTTAAAATAT
TAAAATATTTTAAATAATTAAAAATATATTTAAAATTTAAAAATAAATTAAAAAATATTTAAAAT
TT
Found at i:67001646 original size:18 final size:17
Alignment explanation
Indices: 67001600--67001646 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
67001590 ATATCTTTAA
67001600 AATATTT-AAATATTTT
1 AATATTTAAAATATTTT
*
67001616 ATATTATTAAAAATATATTT
1 A-A-TATTTAAAATAT-TTT
67001636 AATATTTAAAA
1 AATATTTAAAA
67001647 ATAATTCCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 1 0.04
17 1 0.04
18 12 0.48
19 7 0.28
20 4 0.16
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AATATTTAAAATATTTT
Found at i:67007466 original size:3 final size:3
Alignment explanation
Indices: 67007455--67007534 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
67007445 TTATTTTTTT
* *
67007455 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TT- TCTCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-T-A
67007500 TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
67007535 ATATGCCCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 7 0.11
3 46 0.74
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:67007494 original size:18 final size:18
Alignment explanation
Indices: 67007459--67007538 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
67007449 TTTTTTTTAT
* *
67007459 TTTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTA
67007478 TTTATATTATTATTATT-
1 TTTATATTATTATTATTA
* *
67007495 TCTCAT-GTATATATTATTA
1 T-TTATATTAT-TATTATTA
67007514 TTTATATTATTATTA-TA
1 TTTATATTATTATTATTA
67007531 TTATATAT
1 TT-TATAT
67007539 GCCCTCTCCA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
17 8 0.16
18 34 0.68
19 8 0.16
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Found at i:67007521 original size:12 final size:12
Alignment explanation
Indices: 67007454--67007534 Score: 78
Period size: 12 Copynumber: 6.8 Consensus size: 12
67007444 TTTATTTTTT
*
67007454 TTTATTTTATTA
1 TTTATATTATTA
* *
67007466 TTTTTACTATTA
1 TTTATATTATTA
67007478 TTTATATTATTA
1 TTTATATTATTA
* *
67007490 -TTAT-TTCTCA
1 TTTATATTATTA
67007500 TGTATATATTATTA
1 T-T-TATATTATTA
67007514 TTTATATTATTA
1 TTTATATTATTA
67007526 -TTATATTAT
1 TTTATATTAT
67007535 ATATGCCCTC
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
10 4 0.07
11 13 0.23
12 30 0.54
13 4 0.07
14 5 0.09
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:67017142 original size:44 final size:44
Alignment explanation
Indices: 67017009--67017152 Score: 141
Period size: 44 Copynumber: 3.3 Consensus size: 44
67016999 TCTTACCCAA
* ** *
67017009 TAAGCAGTAGGGGAATAGATCGAAGGCAACGAGCTTTAACCCCC
1 TAAGCAGTAGGGAAATAGATCGAAGATAATGAGCTTTAACCCCC
* * * * * *
67017053 TAAGCAGTAGGGTAACA-AGCT-GAAGTTCAT-AGATCTTATCACCC
1 TAAGCAGTAGGG-AA-ATAGATCGAAGATAATGAGCT-TTAACCCCC
*
67017097 TAAGCAGTAGGGAAATAGATCGAAAATAATGAGCTTTAACCCCC
1 TAAGCAGTAGGGAAATAGATCGAAGATAATGAGCTTTAACCCCC
67017141 TAAGCAGTAGGG
1 TAAGCAGTAGGG
67017153 TAACAAGCCA
Statistics
Matches: 78, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
42 1 0.01
43 8 0.10
44 61 0.78
45 7 0.09
46 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.20
Consensus pattern (44 bp):
TAAGCAGTAGGGAAATAGATCGAAGATAATGAGCTTTAACCCCC
Found at i:67017379 original size:44 final size:44
Alignment explanation
Indices: 67017288--67017735 Score: 317
Period size: 44 Copynumber: 10.2 Consensus size: 44
67017278 TTGAGTGAAG
* * * *
67017288 CAGATTGAAGAT-TTACAGATCTCAACCCCCTAAGCAGTAGGGAAA
1 CAGATTGAAGATGATA-AG-TCTTAAACCCCTAAGCAGTAGGGTAA
*
67017333 CAGATTGAAGATGATGAGTCTTAAACCCCTAAGCAGTAGGGTAA
1 CAGATTGAAGATGATAAGTCTTAAACCCCTAAGCAGTAGGGTAA
** * * * *
67017377 CAGGCT-AA-AT-TTACAGACTTCAACCCCCTAAGTAGTAGGG-AA
1 CAGATTGAAGATGATA-AGTCTT-AAACCCCTAAGCAGTAGGGTAA
* * *
67017419 GCTGATTGAAGATGATGAGTCTTAAAACCCTAAGCAGTAGGGTAA
1 -CAGATTGAAGATGATAAGTCTTAAACCCCTAAGCAGTAGGGTAA
* * * *
67017464 CAGACT-AA-AT-TTACAGATCTTAACCCCCTAAGCAGTAGGGAAA
1 CAGATTGAAGATGATA-AG-TCTTAAACCCCTAAGCAGTAGGGTAA
* ** * *
67017507 CAGATCGAAGGCGATGAGCCTTAAACCCCTAAGCAGTAGGGTAA
1 CAGATTGAAGATGATAAGTCTTAAACCCCTAAGCAGTAGGGTAA
* ** * * *
67017551 CAGGTT-AATTTTACAAGATCTTAAACCCCTAAGCAGTAGGGAAA
1 CAGATTGAAGATGATAAG-TCTTAAACCCCTAAGCAGTAGGGTAA
* * * *
67017595 CAGA-TCAATGATGACAAGCCTTAACCCCCTAAGCAGTAGGGTAA
1 CAGATTGAA-GATGATAAGTCTTAAACCCCTAAGCAGTAGGGTAA
* ** * * *
67017639 CAGGTTG-ATTTTACAAGATCTTAAACCCCTAAGCAGTAGGGAAA
1 CAGATTGAAGATGATAAG-TCTTAAACCCCTAAGCAGTAGGGTAA
* * * *
67017683 CAGA-TCAATGATGACAAGCCTTAACCCCCTAAGCAGTAGGGTAA
1 CAGATTGAA-GATGATAAGTCTTAAACCCCTAAGCAGTAGGGTAA
*
67017727 CAGGTTGAA
1 CAGATTGAA
67017736 AATCAAATAT
Statistics
Matches: 310, Mismatches: 72, Indels: 42
0.73 0.17 0.10
Matches are distributed among these distances:
41 2 0.01
42 13 0.04
43 64 0.21
44 187 0.60
45 41 0.13
46 3 0.01
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (44 bp):
CAGATTGAAGATGATAAGTCTTAAACCCCTAAGCAGTAGGGTAA
Found at i:67017406 original size:87 final size:87
Alignment explanation
Indices: 67017298--67017730 Score: 566
Period size: 87 Copynumber: 5.0 Consensus size: 87
67017288 CAGATTGAAG
* *
67017298 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGTCTTAAACCCCT
1 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
67017363 AAGCAGTAGGGTAACAGGCTAA
66 AAGCAGTAGGGTAACAGGCTAA
* * * * *
67017385 ATTTACAGA-CTTCAACCCCCTAAGTAGTAGGGAAGCTGATTGAAGATGATGAGTCTTAAAACCC
1 ATTTACAGATCTT-AACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCC
*
67017449 TAAGCAGTAGGGTAACAGACTAA
65 TAAGCAGTAGGGTAACAGGCTAA
* **
67017472 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGAGCCTTAAACCCCT
1 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
*
67017537 AAGCAGTAGGGTAACAGGTTAA
66 AAGCAGTAGGGTAACAGGCTAA
* * * ** *
67017559 TTTTACAAGATCTTAAACCCCTAAGCAGTAGGGAAACAGA-TCAATGATGACAAGCCTTAACCCC
1 ATTTAC-AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAA-GATGATGAGCCTTAAACCC
* *
67017623 CTAAGCAGTAGGGTAACAGGTTGA
64 CTAAGCAGTAGGGTAACAGGCTAA
* * * ** *
67017647 TTTTACAAGATCTTAAACCCCTAAGCAGTAGGGAAACAGA-TCAATGATGACAAGCCTTAACCCC
1 ATTTAC-AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAA-GATGATGAGCCTTAAACCC
67017711 CTAAGCAGTAGGGTAACAGG
64 CTAAGCAGTAGGGTAACAGG
67017731 TTGAAAATCA
Statistics
Matches: 316, Mismatches: 26, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
86 2 0.01
87 158 0.50
88 156 0.49
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (87 bp):
ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGCCTTAAACCCCT
AAGCAGTAGGGTAACAGGCTAA
Found at i:67017734 original size:88 final size:86
Alignment explanation
Indices: 67017298--67017732 Score: 566
Period size: 88 Copynumber: 5.0 Consensus size: 86
67017288 CAGATTGAAG
* * *
67017298 ATTTACAGATCTCAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGATGAGTCTTAAACCCCT
1 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA-TCAAGATGATGAGCCTTAAACCCCT
*
67017363 AAGCAGTAGGGTAACAGGCTAA
65 AAGCAGTAGGGTAACAGGTTAA
* * * * * *
67017385 ATTTACAGA-CTTCAACCCCCTAAGTAGTAGGGAAGCTGATTGAAGATGATGAGTCTTAAAACCC
1 ATTTACAGATCTT-AACCCCCTAAGCAGTAGGGAAACAGA-TCAAGATGATGAGCCTTAAACCCC
**
67017449 TAAGCAGTAGGGTAACAGACTAA
64 TAAGCAGTAGGGTAACAGGTTAA
**
67017472 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGAGCCTTAAACCCCT
1 ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATC-AAGATGATGAGCCTTAAACCCCT
67017537 AAGCAGTAGGGTAACAGGTTAA
65 AAGCAGTAGGGTAACAGGTTAA
* * ** *
67017559 TTTTACAAGATCTTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGACAAGCCTTAACCCCC
1 ATTTAC-AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAA-GATGATGAGCCTTAAACCCC
*
67017624 TAAGCAGTAGGGTAACAGGTTGA
64 TAAGCAGTAGGGTAACAGGTTAA
* * ** *
67017647 TTTTACAAGATCTTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGACAAGCCTTAACCCCC
1 ATTTAC-AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAA-GATGATGAGCCTTAAACCCC
67017712 TAAGCAGTAGGGTAACAGGTT
64 TAAGCAGTAGGGTAACAGGTT
67017733 GAAAATCAAA
Statistics
Matches: 319, Mismatches: 24, Indels: 9
0.91 0.07 0.03
Matches are distributed among these distances:
86 3 0.01
87 156 0.49
88 160 0.50
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (86 bp):
ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAGATGATGAGCCTTAAACCCCTA
AGCAGTAGGGTAACAGGTTAA
Found at i:67017824 original size:68 final size:68
Alignment explanation
Indices: 67017745--67018015 Score: 443
Period size: 68 Copynumber: 4.0 Consensus size: 68
67017735 AAATCAAATA
* *
67017745 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGTAGATCTCCTTGAAGTTTTAGTGG
1 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
67017810 ATC
66 ATC
* * *
67017813 TTTTTTCCCTGAAATGGCGTTAGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
1 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
67017878 ATC
66 ATC
* * *
67017881 TCTTCTCCCTGATATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
67017946 ATC
66 ATC
* * *
67017949 TCTTCTCCCTGAAATGGTGTTGGAGCAGCTAAAAGCCACAGCAGATTTCCTTGAAGTTTCAGTGG
1 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
67018014 AT
66 AT
67018016 TAATCAAAGC
Statistics
Matches: 186, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 186 1.00
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.29
Consensus pattern (68 bp):
TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
ATC
Found at i:67018890 original size:3 final size:3
Alignment explanation
Indices: 67018855--67018942 Score: 53
Period size: 3 Copynumber: 29.3 Consensus size: 3
67018845 GAGCTTCGTT
* * *
67018855 TTA TTT TTA TT- TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
67018898 TTA TTA TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA -TA TTA
1 TTA TTA TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA
67018942 T
1 T
67018943 ATATGCCCTC
Statistics
Matches: 67, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
2 9 0.13
3 49 0.73
4 7 0.10
5 2 0.03
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:67018932 original size:12 final size:12
Alignment explanation
Indices: 67018865--67018944 Score: 74
Period size: 12 Copynumber: 6.6 Consensus size: 12
67018855 TTATTTTTAT
*
67018865 TTTATTTTATTA
1 TTTATATTATTA
* *
67018877 TTTTTACTATTA
1 TTTATATTATTA
67018889 TTTATATTATTA
1 TTTATATTATTA
* *
67018901 -TTAT-TTCTCA
1 TTTATATTATTA
67018911 TGTATATATTATTA
1 T-T-TATATTATTA
67018925 TTTATATTATTA
1 TTTATATTATTA
67018937 TATTATAT
1 T-TTATAT
67018945 ATGCCCTCTC
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
10 4 0.07
11 4 0.07
12 31 0.57
13 10 0.19
14 5 0.09
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:67019060 original size:12 final size:13
Alignment explanation
Indices: 67019020--67019065 Score: 53
Period size: 12 Copynumber: 3.7 Consensus size: 13
67019010 TAACTACTAT
67019020 TATTA-TATATATG
1 TATTATTAT-TATG
*
67019033 TATTATTGTT-TG
1 TATTATTATTATG
67019045 TATTATTATTAT-
1 TATTATTATTATG
67019057 TATTATTAT
1 TATTATTAT
67019066 CACCCCTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 20 0.69
13 7 0.24
14 2 0.07
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TATTATTATTATG
Found at i:67021206 original size:104 final size:104
Alignment explanation
Indices: 67021049--67021241 Score: 237
Period size: 104 Copynumber: 1.9 Consensus size: 104
67021039 AACATCAGGA
* * * **
67021049 TCAATGCCTTGCATTCTCATTGTGCAATAATATATTCAGCTTCAGACACCATCCTTTCCTTGCAA
1 TCAATGCCTTGCATTCTCATTGTGCAACAATATATACAGCGTCAGACACCATCCCATCCTTGCAA
*
67021114 TGCGCATCAACCAATATATTTTATGTCACAACATTAGAC
66 TGCGCATCAACCAATATATATTATGTCACAACATTAGAC
* * *
67021153 TCAATGCCTT-CTTTCTCATTGTGCCAACAATATGTACAGCGTCAG-CAATCATCCCATCCTTGC
1 TCAATGCCTTGCATTCTCATTGTG-CAACAATATATACAGCGTCAGAC-ACCATCCCATCCTTGC
* * * *
67021216 GATGTGCATCGATCAATATATATTAT
64 AATGCGCATCAACCAATATATATTAT
67021242 ACATGGCAAT
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
103 13 0.18
104 61 0.82
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (104 bp):
TCAATGCCTTGCATTCTCATTGTGCAACAATATATACAGCGTCAGACACCATCCCATCCTTGCAA
TGCGCATCAACCAATATATATTATGTCACAACATTAGAC
Found at i:67024526 original size:25 final size:27
Alignment explanation
Indices: 67024483--67024533 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 27
67024473 AGTTTTGACA
*
67024483 TATAAATAGAAATTTATATTATATTTT
1 TATAAATAGAAATTGATATTATATTTT
67024510 TATAAA-A-AAATTGATATTATATTT
1 TATAAATAGAAATTGATATTATATTT
67024534 ATATTTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.70
26 1 0.04
27 6 0.26
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (27 bp):
TATAAATAGAAATTGATATTATATTTT
Found at i:67024614 original size:24 final size:24
Alignment explanation
Indices: 67024582--67024629 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
67024572 AAATGATGGA
67024582 ATACAATTCTAATTAATATAGTTT
1 ATACAATTCTAATTAATATAGTTT
67024606 ATACAATTCTAATTAATATAGTTT
1 ATACAATTCTAATTAATATAGTTT
67024630 TTCTTTTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (24 bp):
ATACAATTCTAATTAATATAGTTT
Found at i:67025776 original size:11 final size:11
Alignment explanation
Indices: 67025739--67025768 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
67025729 GTAATGGTAG
67025739 TTTTTAGTATT
1 TTTTTAGTATT
*
67025750 TTTTTAGTGTT
1 TTTTTAGTATT
67025761 TTTTTAGT
1 TTTTTAGT
67025769 TTTGTTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (11 bp):
TTTTTAGTATT
Found at i:67026142 original size:23 final size:23
Alignment explanation
Indices: 67026115--67026158 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
67026105 GCAGAGAAAT
* *
67026115 AACAGTAGCAAAATTAAGTCATG
1 AACAGTAACAAAATCAAGTCATG
67026138 AACAGTAACAAAATCAAGTCA
1 AACAGTAACAAAATCAAGTCA
67026159 AGTGTAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.14, T:0.18
Consensus pattern (23 bp):
AACAGTAACAAAATCAAGTCATG
Found at i:67027203 original size:12 final size:11
Alignment explanation
Indices: 67027155--67027210 Score: 54
Period size: 9 Copynumber: 5.6 Consensus size: 11
67027145 TTTGTGTCTA
67027155 TATTAT-TA-T
1 TATTATCTATT
67027164 TATTAT-TA-T
1 TATTATCTATT
67027173 TATTAT-TA-T
1 TATTATCTATT
67027182 TATTAT-TATT
1 TATTATCTATT
67027192 TATCTATCTATT
1 TAT-TATCTATT
67027204 TATTATC
1 TATTATC
67027211 CTTTATATAT
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
9 26 0.59
10 4 0.09
11 7 0.16
12 7 0.16
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.64
Consensus pattern (11 bp):
TATTATCTATT
Found at i:67027209 original size:3 final size:3
Alignment explanation
Indices: 67027155--67027191 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
67027145 TTTGTGTCTA
67027155 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
67027192 TATCTATCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:67027280 original size:3 final size:3
Alignment explanation
Indices: 67027267--67027316 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
67027257 TTACTACATA
* * * *
67027267 TAT TGT TAT TAT TAT TAT TAT TAC TAT TAT TAT TCAT TGT TAT CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT
67027313 TAT T
1 TAT T
67027317 TATGTACTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:67027399 original size:20 final size:20
Alignment explanation
Indices: 67027374--67027421 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
67027364 TTTGGTCCTT
*
67027374 TTATTTTTGATATTCCTTAA
1 TTATTTTCGATATTCCTTAA
67027394 TTATTTTCGATATTCCTTAA
1 TTATTTTCGATATTCCTTAA
67027414 TTATTTTC
1 TTATTTTC
67027422 CTTAATATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.23, C:0.12, G:0.04, T:0.60
Consensus pattern (20 bp):
TTATTTTCGATATTCCTTAA
Found at i:67027480 original size:3 final size:3
Alignment explanation
Indices: 67027472--67027496 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
67027462 TCACACACTT
67027472 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
67027497 ATTCTATCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:67032437 original size:3 final size:3
Alignment explanation
Indices: 67032429--67032463 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
67032419 GTTCTTAAAA
* *
67032429 AAG AAG AAG AAG AAG AAG AAA AAG AAA AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
67032464 ATCATATATC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:67032464 original size:9 final size:9
Alignment explanation
Indices: 67032426--67032464 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
67032416 CAGGTTCTTA
67032426 AAAAAGAAG
1 AAAAAGAAG
*
67032435 AAGAAGAAG
1 AAAAAGAAG
67032444 AAGAAA-AAG
1 AA-AAAGAAG
67032453 AAAAAGAAG
1 AAAAAGAAG
67032462 AAA
1 AAA
67032465 TCATATATCG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
8 3 0.12
9 21 0.81
10 2 0.08
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (9 bp):
AAAAAGAAG
Found at i:67033180 original size:5 final size:5
Alignment explanation
Indices: 67033157--67033239 Score: 77
Period size: 5 Copynumber: 16.8 Consensus size: 5
67033147 ATACTTCACT
*
67033157 AAAA- AAAAG -AAAT AAAAG AAAAG AAAA- AAGAA- AAACA- AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AA-AAG AAA-AG AAAAG AAAAG
*
67033204 AAAAG AAAAG AAAAG AAAAAGG AAAAG AAAGG AAAA
1 AAAAG AAAAG AAAAG -AAAA-G AAAAG AAAAG AAAA
67033240 AGGAGAAGCC
Statistics
Matches: 68, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
4 11 0.16
5 48 0.71
6 8 0.12
7 1 0.01
ACGTcount: A:0.81, C:0.01, G:0.17, T:0.01
Consensus pattern (5 bp):
AAAAG
Found at i:67033190 original size:17 final size:17
Alignment explanation
Indices: 67033157--67033240 Score: 77
Period size: 17 Copynumber: 4.9 Consensus size: 17
67033147 ATACTTCACT
67033157 AAAA-AAAAGAAATAAAAG
1 AAAAGAAAAG-AA-AAAAG
67033175 AAAAGAAAAAAGAAAAACA-
1 AAAAG--AAAAGAAAAA-AG
67033194 AAAAGAAAAG--AAAAG
1 AAAAGAAAAGAAAAAAG
*
67033209 AAAAGAAAAGAAAAAGG
1 AAAAGAAAAGAAAAAAG
*
67033226 AAAAGAAAGGAAAAA
1 AAAAGAAAAGAAAAA
67033241 GGAGAAGCCA
Statistics
Matches: 57, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
14 1 0.02
15 13 0.23
17 23 0.40
18 4 0.07
19 8 0.14
20 3 0.05
21 5 0.09
ACGTcount: A:0.81, C:0.01, G:0.17, T:0.01
Consensus pattern (17 bp):
AAAAGAAAAGAAAAAAG
Found at i:67033217 original size:39 final size:37
Alignment explanation
Indices: 67033157--67033229 Score: 110
Period size: 39 Copynumber: 1.9 Consensus size: 37
67033147 ATACTTCACT
*
67033157 AAAAAAAAGAAATAAAAGAAAAGAAAAAAGAAAAACA
1 AAAAAAAAGAAAGAAAAGAAAAGAAAAAAGAAAAACA
*
67033194 AAAAGAAAAGAAAAGAAAAGAAAAGAAAAAGGAAAA
1 AAAA-AAAAG-AAAGAAAAGAAAAGAAAAAAGAAAA
67033230 GAAAGGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 4 0.12
38 5 0.16
39 23 0.72
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.01
Consensus pattern (37 bp):
AAAAAAAAGAAAGAAAAGAAAAGAAAAAAGAAAAACA
Found at i:67033241 original size:17 final size:17
Alignment explanation
Indices: 67033182--67033243 Score: 83
Period size: 17 Copynumber: 3.8 Consensus size: 17
67033172 AAGAAAAGAA
**
67033182 AAAAGAAAAACAAAAAG
1 AAAAGAAAAAGGAAAAG
67033199 AAAAG-AAAA-GAAAAG
1 AAAAGAAAAAGGAAAAG
67033214 AAAAGAAAAAGGAAAAG
1 AAAAGAAAAAGGAAAAG
*
67033231 AAAGGAAAAAGGA
1 AAAAGAAAAAGGA
67033244 GAAGCCAAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
15 10 0.24
16 8 0.20
17 23 0.56
ACGTcount: A:0.77, C:0.02, G:0.21, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAAGGAAAAG
Found at i:67034242 original size:45 final size:45
Alignment explanation
Indices: 67034137--67034925 Score: 753
Period size: 45 Copynumber: 17.8 Consensus size: 45
67034127 TACCATGGCG
*
67034137 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGTCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
* * * * * *
67034181 AACCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTAAAAATAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
* *
67034226 AATCTTATCCCCCTGAAGTTGCAGTGGAGTAGATTG-AAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
* * ***
67034270 GA-CTTATCTCCCTGAAGTTGCAGTGGAGTAGGCCG-AAGTTAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTA-CA
* * *
67034314 AACCTTAT-TCCCCTGAAGTTGCAGTGGGGCAGGTTG-AAGTTACA
1 AATCTTATCT-CCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
* * * * * *
67034358 AGTCTTATCTCCTTAAAGTTGCAGTGGAGCAGACTAAAATTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
* * * * *
67034403 AACCTTATCTCCCTGAAGTTGTAGTGGGGTAGGTTG-AAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
*
67034447 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
* * *
67034492 AACCTTATCTCCCTGAAGTTGCAGTGGAGCATACTGAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
* * *
67034537 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
* * *
67034582 AATCTTATCTCCCTGAAGTTGC-GTGGAGTAGACTGAAGGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
* * * ** *
67034626 AATCTTATCTCCTTAAAGTTGCAGTGGAGCAAATTG-AAGCCACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
* * ** *
67034670 AGTCTTATCTCCCTGAAGTTACAGTGGAGTGGATCG-AA-TATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGT-TA-CA
* * * * *
67034715 AATCTTATCTCTCTGAAGTTACAGTAGAGCAGATT-AAAGCTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
* * * ** *
67034759 AACCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTG-AAGCCACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
* ** * *** * *
67034803 AGTCTTATCTTTCTGAAGTTACAGTGGAATGGA-TCAAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTA-CA
* * * * *
67034848 AATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATT-AAAGCTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
*
67034892 AACCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
67034926 CGAAGCATTA
Statistics
Matches: 613, Mismatches: 116, Indels: 32
0.81 0.15 0.04
Matches are distributed among these distances:
43 36 0.06
44 280 0.46
45 296 0.48
46 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (45 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAGTTACA
Found at i:67034260 original size:89 final size:89
Alignment explanation
Indices: 67034137--67034924 Score: 703
Period size: 89 Copynumber: 8.9 Consensus size: 89
67034127 TACCATGGCG
* * * *
67034137 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCACAAACCTTATCTCTCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTG
** *
67034202 CAGTGGAGCAGGTTAAAAATAACA
66 CAGTGGAGCAGACTAAAAGTAACA
* * *
67034226 AATCTTATCCCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTACAGA-CTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTG
* * ** *
67034290 CAGTGGAGTAGGC-CGAAGTTAGCA
66 CAGTGGAGCAGACTAAAAG-TAACA
* * * * * * * *
67034314 AACCTTAT-TCCCCTGAAGTTGCAGTGGGGCAGGTTGAAGTTACAAGTCTTATCTCCTTAAAGTT
1 AATCTTATCT-CCCTGAAGTTGCAGTGGAGTAGATTAAAGTTACAAATCTTATCTCCCTGAAGTT
* *
67034378 GCAGTGGAGCAGACTAAAATTTACA
65 GCAGTGGAGCAGACTAAAAGTAACA
* * * * *
67034403 AACCTTATCTCCCTGAAGTTGTAGTGGGGTAGGTTGAAGTTACAAATCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTG
* *
67034468 CAGTGGAGCAGACTGAAAGTTACA
66 CAGTGGAGCAGACTAAAAGTAACA
* * * *
67034492 AACCTTATCTCCCTGAAGTTGCAGTGGAGCATACTGAAAGTTACAAATCTTATCTCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TTAAAGTTACAAATCTTATCTCCCTGAAGTT
* * * *
67034557 GCAGTGGAGTAGACTGAAGGTTACA
65 GCAGTGGAGCAGACTAAAAGTAACA
* * * *
67034582 AATCTTATCTCCCTGAAGTTGC-GTGGAGTAGACTGAAGGTTACAAATCTTATCTCCTTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TTAAAGTTACAAATCTTATCTCCCTGAAGTT
* ** ** *
67034646 GCAGTGGAGCA-AATTGAAGCCACT
65 GCAGTGGAGCAGACTAAAAGTAACA
* * * ** *
67034670 AGTCTTATCTCCCTGAAGTTACAGTGGAGTGGATCGAA-TATAGCAAATCTTATCTCTCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGT-TA-CAAATCTTATCTCCCTGAAGT
* * * *
67034734 TACAGTAGAGCAGA-TTAAAGCT-ATA
64 TGCAGTGGAGCAGACTAAAAG-TAACA
* * * * * ** * * ** *
67034759 AACCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTGAAGCCACTAGTCTTATCTTTCTGAAGTTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTG
*** * *
67034824 CAGTGGAATGGA-TCAAAGATAGCA
66 CAGTGGAGCAGACTAAAAG-TAACA
* * * * *
67034848 AATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTG
67034913 CAGTGGAGCAGA
66 CAGTGGAGCAGA
67034925 TCGAAGCATT
Statistics
Matches: 576, Mismatches: 110, Indels: 26
0.81 0.15 0.04
Matches are distributed among these distances:
87 3 0.01
88 134 0.23
89 362 0.63
90 77 0.13
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (89 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTG
CAGTGGAGCAGACTAAAAGTAACA
Found at i:67034346 original size:133 final size:132
Alignment explanation
Indices: 67034140--67034930 Score: 763
Period size: 133 Copynumber: 5.9 Consensus size: 132
67034130 CATGGCGAAT
* * ** * * *
67034140 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCACAAACCTTATCTCTCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTCGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* * * * * *
67034205 TGGAGCAGGTTAAAAATAACAAATCTTATCCCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTACA
66 TGGAGCAGATTAAAAGTTACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
67034270 GA
131 GA
* *
67034272 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGCCGAAGTTAGCAAACCTTAT-TCCCCTGAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTCGAAGTTA-CAAATCTTATCT-CCCTGAAGTTGC
* * * ** * * ** *
67034336 AGTGGGGCAGGTT-GAAGTTACAAGTCTTATCTCCTTAAAGTTGCAGTGGAGCAGACTAAAATTT
64 AGTGGAGCAGATTAAAAGTTACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGTT
*
67034400 ACAAA
128 ACAGA
* * *
67034405 CCTTATCTCCCTGAAGTTGTAGTGGGGTAGGTTGAAGTTACAAATCTTATCTCCCTGAAGTTGCA
1 -CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTCGAAGTTACAAATCTTATCTCCCTGAAGTTGCA
* * * *
67034470 GTGGAGCAGACTGAAAGTTACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCATACTGAAAGTTA
65 GTGGAGCAGATTAAAAGTTACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG-AAGTTA
*
67034535 CAAA
129 CAGA
*
67034539 TCTTATCTCCCTGAAGTTGCAGTGGAGTA-GACTGAAGGTTACAAATCTTATCTCCCTGAAGTTG
1 -CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTC-GAA-GTTACAAATCTTATCTCCCTGAAGTTG
* * * * * * * * **
67034603 C-GTGGAGTAGACTGAAGGTTACAAATCTTATCTCCTTAAAGTTGCAGTGGAGCAAATTGAAGCC
63 CAGTGGAGCAGATTAAAAGTTACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTT
*
67034667 ACTAGT
128 AC-AGA
* * *
67034673 CTTATCTCCCTGAAGTTACAGTGGAGT-GGATCGAA-TATAGCAAATCTTATCTCTCTGAAGTTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGG-TCGAAGT-TA-CAAATCTTATCTCCCTGAAGTTG
* * * * * **
67034736 CAGTAGAGCAGATT-AAAGCTATAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTGAAGCC
63 CAGTGGAGCAGATTAAAAGTTACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTT
*
67034800 ACTAGT
128 AC-AGA
** * * * * *
67034806 CTTATCTTTCTGAAGTTACAGTGGAAT-GGATCAAAGATAGCAAATCTTATCTCTCTGAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGG-TCGAAGTTA-CAAATCTTATCTCCCTGAAGTTGC
* * * * *
67034870 AGTAGAGTAGATT-AAAGCTATAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAG
64 AGTGGAGCAGATTAAAAGTTACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
67034931 CATTAATTCC
Statistics
Matches: 565, Mismatches: 78, Indels: 31
0.84 0.12 0.05
Matches are distributed among these distances:
131 1 0.00
132 70 0.12
133 294 0.52
134 172 0.30
135 28 0.05
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (132 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTCGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
TGGAGCAGATTAAAAGTTACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
GA
Found at i:67035425 original size:23 final size:23
Alignment explanation
Indices: 67035399--67035442 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
67035389 GTAGAAAAAT
*
67035399 AACAGTAGCAAAATCAAGTCATG
1 AACAGTAACAAAATCAAGTCATG
67035422 AACAGTAACAAAATCAAGTCA
1 AACAGTAACAAAATCAAGTCA
67035443 AGTGTAACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.52, C:0.18, G:0.14, T:0.16
Consensus pattern (23 bp):
AACAGTAACAAAATCAAGTCATG
Found at i:67036561 original size:3 final size:3
Alignment explanation
Indices: 67036548--67036597 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
67036538 TTACTACATA
* * * *
67036548 TAT TGT TAT TAT TAT TAT TAT TAC TAT TAT TAT TAAT TGT TAT CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT
67036594 TAT T
1 TAT T
67036598 TATGTACTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:67036743 original size:3 final size:3
Alignment explanation
Indices: 67036735--67036770 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
67036725 CACACACTTC
67036735 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
67036771 GTTCTATCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:67038720 original size:104 final size:104
Alignment explanation
Indices: 67038562--67038759 Score: 378
Period size: 104 Copynumber: 1.9 Consensus size: 104
67038552 ATTACAATAA
**
67038562 ACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
67038627 CATCAATAACATATGCAAGCCCATTTGGGTAACAGTGGT
66 CATCAATAACATATGCAAGCCCATTTGGGTAACAGTGGT
67038666 ACTGGGCCAGAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
67038731 CATCAATAACATATGCAAGCCCATTTGGG
66 CATCAATAACATATGCAAGCCCATTTGGG
67038760 GAGACTACTC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
104 92 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (104 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
CATCAATAACATATGCAAGCCCATTTGGGTAACAGTGGT
Found at i:67040586 original size:26 final size:26
Alignment explanation
Indices: 67040553--67040627 Score: 141
Period size: 26 Copynumber: 2.9 Consensus size: 26
67040543 CCCATTATGG
67040553 AACATTTACCTAACCCATTATCATGA
1 AACATTTACCTAACCCATTATCATGA
*
67040579 AACATTTACCTAACCCATTATCATGG
1 AACATTTACCTAACCCATTATCATGA
67040605 AACATTTACCTAACCCATTATCA
1 AACATTTACCTAACCCATTATCA
67040628 ATTTATATCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.37, C:0.28, G:0.04, T:0.31
Consensus pattern (26 bp):
AACATTTACCTAACCCATTATCATGA
Found at i:67043580 original size:29 final size:29
Alignment explanation
Indices: 67043546--67043601 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
67043536 TTTGATTCTT
67043546 TTTAATAATACAAGGACTAAATTGATCCA
1 TTTAATAATACAAGGACTAAATTGATCCA
* * * *
67043575 TTTAATAGTATAGGGACTAATTTGATC
1 TTTAATAATACAAGGACTAAATTGATC
67043602 AGGTCCCTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (29 bp):
TTTAATAATACAAGGACTAAATTGATCCA
Found at i:67050504 original size:18 final size:18
Alignment explanation
Indices: 67050481--67050516 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
67050471 TTAACTCTTA
67050481 AATAAAAAGATAATGCGC
1 AATAAAAAGATAATGCGC
67050499 AATAAAAAGATAATGCGC
1 AATAAAAAGATAATGCGC
67050517 TCTAACGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.11, G:0.17, T:0.17
Consensus pattern (18 bp):
AATAAAAAGATAATGCGC
Found at i:67052483 original size:18 final size:18
Alignment explanation
Indices: 67052460--67052494 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
67052450 ATTCGAGTTG
*
67052460 ACTCGAATAACTTGATTA
1 ACTCGAATAACTCGATTA
67052478 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
67052495 CGTTTAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.31
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:67052743 original size:29 final size:30
Alignment explanation
Indices: 67052689--67052749 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 30
67052679 ATCTCAAAAT
* *
67052689 TATACATGAACTTTGATTTAATGTGCAATTA
1 TATACATGAACTTTAATTT-AGGTGCAATTA
67052720 TATACATGAACTTTAATTT-GGTGCAATTA
1 TATACATGAACTTTAATTTAGGTGCAATTA
67052749 T
1 T
67052750 CTCCCTGCCG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 10 0.36
31 18 0.64
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.43
Consensus pattern (30 bp):
TATACATGAACTTTAATTTAGGTGCAATTA
Found at i:67058201 original size:42 final size:42
Alignment explanation
Indices: 67058154--67058256 Score: 134
Period size: 42 Copynumber: 2.5 Consensus size: 42
67058144 ATATGGCTAG
* * * *
67058154 GGACATTAGCTTGTGTCCAGGCAGTGTGAGCCATACGGGTAA
1 GGACATGAGCGTGTGTCCAGGCAGTGTGAGCCACACGGGCAA
* * *
67058196 GGACATGGGCGTGTGTCTAGGCCGTGTGAGCCACACGGGCAA
1 GGACATGAGCGTGTGTCCAGGCAGTGTGAGCCACACGGGCAA
*
67058238 GGATATGAGCGTGTGTCCA
1 GGACATGAGCGTGTGTCCA
67058257 AGTCGTGTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.21, C:0.20, G:0.37, T:0.21
Consensus pattern (42 bp):
GGACATGAGCGTGTGTCCAGGCAGTGTGAGCCACACGGGCAA
Found at i:67058357 original size:146 final size:146
Alignment explanation
Indices: 67058054--67058357 Score: 358
Period size: 146 Copynumber: 2.1 Consensus size: 146
67058044 GGCTAGGGAT
* * * *
67058054 ATGGGTGTGTGTCCAGGCCGTGTTAGCCACATGGGCAAGGACACGAGTGTGTGTCTAGGCTATGT
1 ATGGGTGTGTGTCCAGGCCGTGTGAGCCACACGGGCAAGGACACGAGCGTGTGTCAAGGCTATGT
* * * * * * * * * *
67058119 AACTCATTGTTTACGCTTTAGAACCATATGGCTAGGGACATTAGCTTGTGTCCAGGCAGTGTGAG
66 AACTCACTGTTTACGATTTAGAACCACACGACTAGGGACATGAGCATGTGCCCAGGCAGTATAAG
*
67058184 CCATACGGGTAAGGAC
131 CCATACAGGTAAGGAC
* * * * * *
67058200 ATGGGCGTGTGTCTAGGCCGTGTGAGCCACACGGGCAAGGATATGAGCGTGTGTCCAAGTC-GTG
1 ATGGGTGTGTGTCCAGGCCGTGTGAGCCACACGGGCAAGGACACGAGCGTGTGT-CAAGGCTATG
* * * *
67058264 TATCTCACTGTTTATGATTTAGAACCACACGACTAGGGACATGGGCATGTGCCCAGGCCGTATAA
65 TAACTCACTGTTTACGATTTAGAACCACACGACTAGGGACATGAGCATGTGCCCAGGCAGTATAA
67058329 GCCATACAGGTAAGGAC
130 GCCATACAGGTAAGGAC
*
67058346 ATGGGTTTGTGT
1 ATGGGTGTGTGT
67058358 ACTGGCTGTG
Statistics
Matches: 130, Mismatches: 27, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
146 126 0.97
147 4 0.03
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.26
Consensus pattern (146 bp):
ATGGGTGTGTGTCCAGGCCGTGTGAGCCACACGGGCAAGGACACGAGCGTGTGTCAAGGCTATGT
AACTCACTGTTTACGATTTAGAACCACACGACTAGGGACATGAGCATGTGCCCAGGCAGTATAAG
CCATACAGGTAAGGAC
Found at i:67068166 original size:40 final size:39
Alignment explanation
Indices: 67068090--67068184 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 39
67068080 CCATCTCCGA
* * *
67068090 CCAACCCAACACACC-ATGTGGGGACAGAATCGACCCAC
1 CCAACCCTACACACCAATATGGGGACAGAATCAACCCAC
* * *
67068128 CCAACCCTACACACCAAGTATGGGGATATAATCAACCCAT
1 CCAACCCTACACACCAA-TATGGGGACAGAATCAACCCAC
67068168 CCAACCCTACACACCAA
1 CCAACCCTACACACCAA
67068185 AAGGTACTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
38 14 0.29
39 1 0.02
40 34 0.69
ACGTcount: A:0.37, C:0.39, G:0.13, T:0.12
Consensus pattern (39 bp):
CCAACCCTACACACCAATATGGGGACAGAATCAACCCAC
Found at i:67075733 original size:33 final size:33
Alignment explanation
Indices: 67075691--67075766 Score: 134
Period size: 33 Copynumber: 2.3 Consensus size: 33
67075681 GAGCCTACAC
67075691 GCCCGTGTGGCCCACACGACTCAACTTAGCTTT
1 GCCCGTGTGGCCCACACGACTCAACTTAGCTTT
*
67075724 GCCCGTGTGGCCCACATGACTCAACTTAGCTTT
1 GCCCGTGTGGCCCACACGACTCAACTTAGCTTT
*
67075757 GTCCGTGTGG
1 GCCCGTGTGG
67075767 ATCACACGGC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.16, C:0.33, G:0.25, T:0.26
Consensus pattern (33 bp):
GCCCGTGTGGCCCACACGACTCAACTTAGCTTT
Found at i:67076426 original size:5 final size:5
Alignment explanation
Indices: 67076411--67076445 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
67076401 AGAAAAACGG
67076411 AGAAGA AGAAA AGAAA AGAAA AGAAA AGAAA AGAA
1 AGAA-A AGAAA AGAAA AGAAA AGAAA AGAAA AGAA
67076446 TTTTGATAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:67081037 original size:45 final size:45
Alignment explanation
Indices: 67080984--67081071 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
67080974 TTATGTAATC
* *
67080984 TGAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATT
1 TGAACTCATTGAGCTATGGTCTAAGTTCATGATATATGTGACATT
* *
67081029 TGAACTCATTGAGCTATGGTCTGAGTTCGTGATATATGTGACA
1 TGAACTCATTGAGCTATGGTCTAAGTTCATGATATATGTGACA
67081072 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (45 bp):
TGAACTCATTGAGCTATGGTCTAAGTTCATGATATATGTGACATT
Found at i:67086833 original size:22 final size:21
Alignment explanation
Indices: 67086805--67086854 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
67086795 ATAGAAACTG
67086805 ATAGAATTCTAATTCCCAAAAA
1 ATAGAATTCT-ATTCCCAAAAA
**
67086827 ATAGAATT-TATTCTTAAAAA
1 ATAGAATTCTATTCCCAAAAA
67086847 ATA-AATTC
1 ATAGAATTC
67086855 GCACTACTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 4 0.16
20 12 0.48
21 1 0.04
22 8 0.32
ACGTcount: A:0.50, C:0.12, G:0.04, T:0.34
Consensus pattern (21 bp):
ATAGAATTCTATTCCCAAAAA
Found at i:67089161 original size:34 final size:33
Alignment explanation
Indices: 67089112--67089205 Score: 100
Period size: 34 Copynumber: 2.8 Consensus size: 33
67089102 GGTAGTAAGG
*
67089112 AAATATAGTAA-AATATAGTATAATTTACAAATAA
1 AAATAT-GTAATAATATA-TATAATATACAAATAA
* * **
67089146 AAATATGTAATAATATAAATCATATAGTAATAA
1 AAATATGTAATAATATATATAATATACAAATAA
*
67089179 AATATATGTAATAAAATATATAATATA
1 AA-ATATGTAATAATATATATAATATA
67089206 ATATAAGAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
33 17 0.34
34 33 0.66
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (33 bp):
AAATATGTAATAATATATATAATATACAAATAA
Found at i:67089191 original size:14 final size:15
Alignment explanation
Indices: 67089145--67089200 Score: 69
Period size: 14 Copynumber: 3.7 Consensus size: 15
67089135 TTTACAAATA
* *
67089145 AAAATATGTAATAAT
1 AAAATATATAGTAAT
67089160 ATAAATCATATAGTAAT
1 A-AAAT-ATATAGTAAT
67089177 AAAATATAT-GTAAT
1 AAAATATATAGTAAT
67089191 AAAATATATA
1 AAAATATATA
67089201 ATATAATATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
14 14 0.39
15 5 0.14
16 8 0.22
17 9 0.25
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (15 bp):
AAAATATATAGTAAT
Found at i:67089202 original size:12 final size:13
Alignment explanation
Indices: 67089167--67089210 Score: 63
Period size: 14 Copynumber: 3.4 Consensus size: 13
67089157 AATATAAATC
67089167 ATATAGTAATAAA
1 ATATAGTAATAAA
67089180 ATATATGTAATAAA
1 ATATA-GTAATAAA
*
67089194 ATATA-TAATATA
1 ATATAGTAATAAA
67089206 ATATA
1 ATATA
67089211 AGAAGAATGT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 11 0.38
13 5 0.17
14 13 0.45
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (13 bp):
ATATAGTAATAAA
Found at i:67089350 original size:7 final size:7
Alignment explanation
Indices: 67089310--67089486 Score: 93
Period size: 7 Copynumber: 25.6 Consensus size: 7
67089300 TTACTAACTT
67089310 TATAA-A
1 TATAATA
67089316 TA-AATA
1 TATAATA
67089322 TATAATAA
1 TATAAT-A
67089330 TATGAATAA
1 TAT-AAT-A
67089339 TATAATA
1 TATAATA
67089346 TATAATA
1 TATAATA
67089353 TATAATA
1 TATAATA
67089360 TATAA-A
1 TATAATA
*
67089366 AATAATA
1 TATAATA
* *
67089373 TGTACTA
1 TATAATA
*
67089380 -A-AACA
1 TATAATA
67089385 TATAATA
1 TATAATA
*
67089392 TAGATATA
1 TATA-ATA
*
67089400 AATAATA
1 TATAATA
67089407 TATATATA
1 TATA-ATA
*
67089415 TAAAATA
1 TATAATA
*
67089422 TATGATA
1 TATAATA
*
67089429 -AAAAT-
1 TATAATA
*
67089434 TAAAAATA
1 T-ATAATA
*
67089442 GATAATAA
1 TATAAT-A
67089450 TATAATA
1 TATAATA
* *
67089457 GATAAAA
1 TATAATA
*
67089464 TATAGTA
1 TATAATA
67089471 -A-AATA
1 TATAATA
*
67089476 AATAATA
1 TATAATA
67089483 TATA
1 TATA
67089487 TAATGAAAAT
Statistics
Matches: 129, Mismatches: 27, Indels: 29
0.70 0.15 0.16
Matches are distributed among these distances:
5 7 0.05
6 16 0.12
7 74 0.57
8 24 0.19
9 8 0.06
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (7 bp):
TATAATA
Found at i:67089406 original size:15 final size:15
Alignment explanation
Indices: 67089386--67089484 Score: 57
Period size: 15 Copynumber: 6.5 Consensus size: 15
67089376 ACTAAAACAT
67089386 ATAATATAGATATAA
1 ATAATATAGATATAA
*
67089401 ATAATATATATATATA
1 ATAATATAGATATA-A
*
67089417 A-AATATATGATAAAA
1 ATAATATA-GATATAA
*
67089432 ATTAAAAATAGATA-ATA
1 A-T-AATATAGATATA-A
67089449 AT-ATAATAGATA-AA
1 ATAAT-ATAGATATAA
*
67089463 AT-ATAGTA-AAATAA
1 ATAATA-TAGATATAA
67089477 ATAATATA
1 ATAATATA
67089485 TATAATGAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 21
0.72 0.06 0.22
Matches are distributed among these distances:
13 3 0.04
14 14 0.21
15 32 0.47
16 8 0.12
17 6 0.09
18 5 0.07
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (15 bp):
ATAATATAGATATAA
Found at i:67089480 original size:19 final size:19
Alignment explanation
Indices: 67089453--67089517 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 19
67089443 ATAATAATAT
*
67089453 AATAGATAAAATATAGTAA
1 AATAAATAAAATATAGTAA
*
67089472 AATAAATAATATATATAATGAA
1 AATAAATAA-A-ATATAGT-AA
*
67089494 AATACATATAACATATAGTAA
1 AATA-A-ATAAAATATAGTAA
67089515 AAT
1 AAT
67089518 GCAAATATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 8 0.22
20 1 0.03
21 11 0.30
22 12 0.32
23 1 0.03
24 4 0.11
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (19 bp):
AATAAATAAAATATAGTAA
Found at i:67091701 original size:288 final size:290
Alignment explanation
Indices: 67091183--67091837 Score: 1066
Period size: 288 Copynumber: 2.3 Consensus size: 290
67091173 TCTGCTTTCC
** * *
67091183 GACAATACAGAGATTTCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAG
1 GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAG
**
67091248 CTAT-GTCTTCGATTTGTTCCTTGTAAACACAAGGATACCAAATCATCTTGGATTTGTTTGAGAA
66 CTATGGTCTTCGATTTGTTCCTTGTAAACACAAAAATACCAAATCATCTTGGATTTGTTTGAGAA
* *
67091312 CATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCGTGTAAACACAAGAATGCCAAATCAT
131 CATCTGAGAGTCAAATCTGCTACGTCCTCAATTTGTTCCGTGTAAACACAAGAATGCCAAATCAT
* * *
67091377 CTTAGATCTGCTTTAGTATAAACATCTGAAGGTTAGAT-TGCTATGTGTCTGCCCTCTGTCGAAT
196 CTTAGATCTGCTTCAGCATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAAT
67091441 ATGGAGACGCCAAACTTCAATTTGTTCTCT
261 ATGGAGACGCCAAACTTCAATTTGTTCTCT
* * * *
67091471 GGCAATACAGAAATGCCAAATCATCTTAGACTTGCTTCATTGTAAGCACGTGAAAGCCAAATCAG
1 GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAG
* *
67091536 CTATGGT-TTTGATTTGTTCCTTGTAAACACAAAAATACCAAATTATCTTGGATTTGTTTGAGAA
66 CTATGGTCTTCGATTTGTTCCTTGTAAACACAAAAATACCAAATCATCTTGGATTTGTTTGAGAA
*
67091600 CATCTGAGAGTCAAATCTGCTACGTCCTCAATTTGTTCCTTGTAAACACAAGAATGCCAAATCAT
131 CATCTGAGAGTCAAATCTGCTACGTCCTCAATTTGTTCCGTGTAAACACAAGAATGCCAAATCAT
*
67091665 CTTGGATCTGCTTCAGCATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAAT
196 CTTAGATCTGCTTCAGCATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAAT
* *
67091730 ATGGAGATGCCAAACTTCGATTTGTTCTCT
261 ATGGAGACGCCAAACTTCAATTTGTTCTCT
* * *
67091760 GAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAGTACGTGAAAGCCAAATCAG
1 GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAG
67091825 CTAT-GTCTTCGAT
66 CTATGGTCTTCGAT
67091838 CTGCTCTCCG
Statistics
Matches: 335, Mismatches: 29, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
288 213 0.64
289 122 0.36
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (290 bp):
GACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAG
CTATGGTCTTCGATTTGTTCCTTGTAAACACAAAAATACCAAATCATCTTGGATTTGTTTGAGAA
CATCTGAGAGTCAAATCTGCTACGTCCTCAATTTGTTCCGTGTAAACACAAGAATGCCAAATCAT
CTTAGATCTGCTTCAGCATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAAT
ATGGAGACGCCAAACTTCAATTTGTTCTCT
Found at i:67091959 original size:131 final size:118
Alignment explanation
Indices: 67091653--67091959 Score: 328
Period size: 131 Copynumber: 2.5 Consensus size: 118
67091643 AAACACAAGA
* **
67091653 ATGCCAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGC
1 ATGCCAAATCATCTTGGATCTGCTTCAGCAT-AACACCTGAAGGCCAGATCTGCTATGTGTCTGC
*
67091718 CCTCCGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTGAAAATACAGAG
65 CCTCCGTCGAATATGGAAATGCCAAACTTCGATTTGTTCTCTGAAAATACAGAG
* * * * * * * *
67091772 ATGCCAAATCATCTTAGATTTGCTTCATCATAAGTACGTGAAAGCCAAATCAGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGCATAA-CACCTGAAGGCCAGATCTGCTATG---T-G-
* * *
67091837 TCTGCTCTCCGTCGAATATGGAAATGCCAAATCTGTTTCCTCGATTAT-TTTTCTGACAATACAG
60 TCTGCCCTCCGTCGAATATGGAAATGCCAAA-C----T--TCGATT-TGTTCTCTGAAAATACAG
67091901 AG
117 AG
67091903 ATGCCAAATCATCTTGGATCTGCTTCAGCATGAACACCTGAAGGCCAGATCTGCTAT
1 ATGCCAAATCATCTTGGATCTGCTTCAGCAT-AACACCTGAAGGCCAGATCTGCTAT
67091960 ACTTTAACCT
Statistics
Matches: 150, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
118 2 0.01
119 44 0.29
122 1 0.01
123 1 0.01
124 29 0.19
125 1 0.01
129 1 0.01
131 68 0.45
132 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (118 bp):
ATGCCAAATCATCTTGGATCTGCTTCAGCATAACACCTGAAGGCCAGATCTGCTATGTGTCTGCC
CTCCGTCGAATATGGAAATGCCAAACTTCGATTTGTTCTCTGAAAATACAGAG
Found at i:67092080 original size:43 final size:43
Alignment explanation
Indices: 67091961--67092165 Score: 119
Period size: 43 Copynumber: 4.8 Consensus size: 43
67091951 ATCTGCTATA
* *
67091961 CTTTAACCTGTTACCCTACTGCTTAAGGGG-TTAAG-GCGC-AT
1 CTTTGACCTGTTACCCTACTGCTT-AGGGGATTAAGACCGCAAT
* * * *
67092002 CTTCGATCTGCT-CCACTACTGTTTAGGGAGA-TAAGATCCGCAAT
1 CTTTGACCTGTTACC-CTACTGCTTAGGG-GATTAAGA-CCGCAAT
*
67092046 -TTTGACCTGTTACCCTACTGCTTAGGGGATTAAGA-CG-AGT
1 CTTTGACCTGTTACCCTACTGCTTAGGGGATTAAGACCGCAAT
* * * *
67092086 CGTCGTTGATCTGTT-CCACTACTACTTAGGGAGA-TAAGATCTGTAAT
1 C-T--TTGACCTGTTACC-CTACTGCTTAGGG-GATTAAGA-CCGCAAT
*
67092133 -TTT-AGCCTGTTACCCTACTGCTTAGGGAATTAA
1 CTTTGA-CCTGTTACCCTACTGCTTAGGGGATTAA
67092166 AGCGAGTCTT
Statistics
Matches: 126, Mismatches: 18, Indels: 38
0.69 0.10 0.21
Matches are distributed among these distances:
40 8 0.06
41 23 0.18
42 5 0.04
43 52 0.41
44 32 0.25
45 3 0.02
46 1 0.01
47 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (43 bp):
CTTTGACCTGTTACCCTACTGCTTAGGGGATTAAGACCGCAAT
Found at i:67092120 original size:87 final size:83
Alignment explanation
Indices: 67091966--67092175 Score: 255
Period size: 87 Copynumber: 2.5 Consensus size: 83
67091956 CTATACTTTA
* **
67091966 ACCTGTTACCCTACTGCTTAAGGGG-TTAAGGCGCA-TCTTCGATCTGCTCCACTACTGTTTAGG
1 ACCTGTTACCCTACTGCTT-AGGGGATTAAGACG-AGTCTTCGATCTGCTCCACTACTACTTAGG
67092029 GAGATAAGATCCGCAATTTT
64 GAGATAAGATCCGCAATTTT
* *
67092049 GACCTGTTACCCTACTGCTTAGGGGATTAAGACGAGTCGTCGTTGATCTGTTCCACTACTACTTA
1 -ACCTGTTACCCTACTGCTTAGGGGATTAAGACGAGTC-T--TCGATCTGCTCCACTACTACTTA
* *
67092114 GGGAGATAAGATCTGTAATTTT
62 GGGAGATAAGATCCGCAATTTT
*
67092136 AGCCTGTTACCCTACTGCTTAGGGAATTAA-AGCGAGTCTT
1 A-CCTGTTACCCTACTGCTTAGGGGATTAAGA-CGAGTCTT
67092176 GTAATTTTCA
Statistics
Matches: 111, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
83 6 0.05
84 29 0.26
85 1 0.01
86 3 0.03
87 72 0.65
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (83 bp):
ACCTGTTACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCCACTACTACTTAGGGA
GATAAGATCCGCAATTTT
Found at i:67104094 original size:34 final size:34
Alignment explanation
Indices: 67104045--67104140 Score: 106
Period size: 34 Copynumber: 2.8 Consensus size: 34
67104035 GGTAGTAAGG
*
67104045 AAATATAGTAA-AATATAATATAATTTACAAATAA
1 AAATAT-GTAATAATATAATATAATATACAAATAA
* **
67104079 AAATATGTAATAATATAA-ATCATATAGTAATAA
1 AAATATGTAATAATATAATATAATATACAAATAA
*
67104112 AATATATGTAATAAAATATATATAATATA
1 AA-ATATGTAATAATATA-ATATAATATA
67104141 AGAAGAATGT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
33 17 0.33
34 27 0.52
35 1 0.02
36 7 0.13
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.34
Consensus pattern (34 bp):
AAATATGTAATAATATAATATAATATACAAATAA
Found at i:67104124 original size:14 final size:14
Alignment explanation
Indices: 67104089--67104138 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
67104079 AAATATGTAA
67104089 TAATATAAATCATATAG
1 TAATA-AAAT-ATAT-G
67104106 TAATAAAATATATG
1 TAATAAAATATATG
*
67104120 TAATAAAATATATA
1 TAATAAAATATATG
67104134 TAATA
1 TAATA
67104139 TAAGAAGAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
14 19 0.59
15 4 0.12
16 4 0.12
17 5 0.16
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (14 bp):
TAATAAAATATATG
Found at i:67104280 original size:7 final size:7
Alignment explanation
Indices: 67104240--67104414 Score: 100
Period size: 7 Copynumber: 25.6 Consensus size: 7
67104230 TTACTAACTT
67104240 TATAA-A
1 TATAATA
67104246 TA-AATA
1 TATAATA
67104252 TATAATAA
1 TATAAT-A
67104260 TATGAATAA
1 TAT-AAT-A
67104269 TATAATA
1 TATAATA
67104276 TATAATA
1 TATAATA
67104283 TATAATA
1 TATAATA
67104290 TATAA-A
1 TATAATA
*
67104296 AATAATA
1 TATAATA
* *
67104303 TGTACTA
1 TATAATA
*
67104310 -A-AACA
1 TATAATA
67104315 TATAATA
1 TATAATA
*
67104322 TAGATATA
1 TATA-ATA
*
67104330 AATAATA
1 TATAATA
67104337 TAT-ATA
1 TATAATA
*
67104343 TAAAATA
1 TATAATA
*
67104350 TATGATA
1 TATAATA
*
67104357 -AAAAT-
1 TATAATA
*
67104362 TAAAAATA
1 T-ATAATA
67104370 TATAATAA
1 TATAAT-A
67104378 TATAATA
1 TATAATA
* *
67104385 GATAAAA
1 TATAATA
*
67104392 TATAGTA
1 TATAATA
67104399 -A-AATA
1 TATAATA
*
67104404 AATAATA
1 TATAATA
67104411 TATA
1 TATA
67104415 TAATGAAAAT
Statistics
Matches: 129, Mismatches: 25, Indels: 29
0.70 0.14 0.16
Matches are distributed among these distances:
5 7 0.05
6 21 0.16
7 73 0.57
8 20 0.16
9 8 0.06
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (7 bp):
TATAATA
Found at i:67104318 original size:63 final size:58
Alignment explanation
Indices: 67104251--67104414 Score: 149
Period size: 61 Copynumber: 2.7 Consensus size: 58
67104241 ATAAATAAAT
67104251 ATATAATAATATGAATAATATAATATATAATATATAATATATAAAAATAATATGTACTAAAAC
1 ATATAATAATATGAATAATATAATATATAATATATAATATATAAAAA-AA-AT-TA--AAAAC
* * * *
67104314 ATATAAT-ATA-GATATAA-ATAATATAT-ATATAAAATATATGATAAAAATTAAAAAT
1 ATATAATAATATGA-ATAATATAATATATAATATATAATATATAAAAAAAATTAAAAAC
* *
67104369 ATATAATAATAT-AATAGATAAAATATAGTAAAATAAATAATATATA
1 ATATAATAATATGAATA-ATATAATATA-T--AATATATAATATATA
67104415 TAATGAAAAT
Statistics
Matches: 84, Mismatches: 8, Indels: 20
0.75 0.07 0.18
Matches are distributed among these distances:
55 14 0.17
56 5 0.06
57 9 0.11
58 3 0.04
59 2 0.02
60 15 0.18
61 22 0.26
62 7 0.08
63 7 0.08
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (58 bp):
ATATAATAATATGAATAATATAATATATAATATATAATATATAAAAAAAATTAAAAAC
Found at i:67104438 original size:87 final size:86
Alignment explanation
Indices: 67104279--67104438 Score: 189
Period size: 87 Copynumber: 1.8 Consensus size: 86
67104269 TATAATATAT
* * * * *
67104279 AATATATAATATATAAAAATAATATGTACTAAAACATATAATATAGATATAAATAATATATATAT
1 AATATATAATATATAAAAATAAAATATACTAAAACAAATAATATA-ATATAAATAAAATACATAT
67104344 AAAATATATGATAAAAATTAAA
65 AAAATATATGATAAAAATTAAA
* * *
67104366 AATATATAATAATATAATAGATAAAATATAGTAAAATAAATAATAT-ATAT-AATGAAAATACAT
1 AATATATAAT-ATATAA-AAATAAAATATACTAAAACAAATAATATAATATAAAT-AAAATACAT
*
67104429 ATAACATATA
63 ATAAAATATA
67104439 GTAAAATGCA
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
86 3 0.05
87 30 0.49
88 6 0.10
89 22 0.36
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.33
Consensus pattern (86 bp):
AATATATAATATATAAAAATAAAATATACTAAAACAAATAATATAATATAAATAAAATACATATA
AAATATATGATAAAAATTAAA
Found at i:67104464 original size:27 final size:26
Alignment explanation
Indices: 67104403--67104470 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
67104393 ATAGTAAAAT
* *
67104403 AAATAATATATATAATGAAAATACATA
1 AAAT-ATATATAAAATGAAAATACAAA
* * *
67104430 TAACATATAGTAAAATGCAAATACAAA
1 AAATATATA-TAAAATGAAAATACAAA
67104457 AAATATATGATAAA
1 AAATATAT-ATAAA
67104471 CAAATCCTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
26 5 0.16
27 26 0.81
28 1 0.03
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26
Consensus pattern (26 bp):
AAATATATATAAAATGAAAATACAAA
Found at i:67109080 original size:42 final size:41
Alignment explanation
Indices: 67108962--67109134 Score: 118
Period size: 43 Copynumber: 4.0 Consensus size: 41
67108952 GGATTTCTGA
* * * * *
67108962 TATTTAATTTCGTGTAAGACCACATCT-GGATCGTTGACATCG
1 TATTTGATTTCGTGTAAGACC-CTTCTGGGA-CATTGGCATTG
* * * *
67109004 -ATTTGAGATTTACGTGGAAGACCATGTCTAGGACATTGGTATTG
1 TATTT--GATTT-CGTGTAAGACCCT-TCTGGGACATTGGCATTG
* *
67109048 TATTTGATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCG
1 TATTTGATTTCGTGTAAGACCCT-TCTGGGACATTGGCATTG
* *
67109090 ATATTTGATTACATGTAAGACCACGTT-TGGGACATTGGCATTG
1 -TATTTGATTTCGTGTAAGACC-C-TTCTGGGACATTGGCATTG
67109133 TA
1 TA
67109135 CGAGCTTTCC
Statistics
Matches: 103, Mismatches: 19, Indels: 18
0.74 0.14 0.13
Matches are distributed among these distances:
41 4 0.04
42 27 0.26
43 42 0.41
44 22 0.21
45 8 0.08
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.35
Consensus pattern (41 bp):
TATTTGATTTCGTGTAAGACCCTTCTGGGACATTGGCATTG
Found at i:67114966 original size:46 final size:47
Alignment explanation
Indices: 67114821--67115079 Score: 230
Period size: 46 Copynumber: 5.5 Consensus size: 47
67114811 TTTGTGTGCT
* * * * *
67114821 AGTGTAAGACATGTCTAGGACACGCATCGACCAC-ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAGAGCC
** * * *
67114867 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCC
67114915 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
*
67114961 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT---GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCC
* * * * *
67115005 AGTGTAAGACCCTGTCTAGGACATGGCATCGGCAC-GGATATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGATGT-AGAGCC
67115055 AGTGTAAGACTATGTCTGGGACATG
1 AGTGTAAGAC-ATGTCTGGGACATG
67115080 ACGTTAGCCT
Statistics
Matches: 175, Mismatches: 24, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
44 11 0.06
45 14 0.08
46 76 0.43
47 27 0.15
48 23 0.13
49 3 0.02
50 21 0.12
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
Found at i:67122500 original size:46 final size:46
Alignment explanation
Indices: 67122447--67122537 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
67122437 AGTTAACCCA
67122447 CCATTTACTTAAGATTGATGATGATATCATGATAAATAATTGTACG
1 CCATTTACTTAAGATTGATGATGATATCATGATAAATAATTGTACG
67122493 CCATTTACTTAAGATTGATGATGATATCATGATAAATAATTGTAC
1 CCATTTACTTAAGATTGATGATGATATCATGATAAATAATTGTAC
67122538 TCATAAAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (46 bp):
CCATTTACTTAAGATTGATGATGATATCATGATAAATAATTGTACG
Found at i:67124283 original size:19 final size:20
Alignment explanation
Indices: 67124259--67124305 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
67124249 TAGTCTAAGT
67124259 ATTAAAATAGATAAA-AAAA
1 ATTAAAATAGATAAATAAAA
*
67124278 ATTAAAA-GGATAAATAAAA
1 ATTAAAATAGATAAATAAAA
67124297 ATTATAAAT
1 ATTA-AAAT
67124306 GAATTTTGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 6 0.25
19 15 0.62
20 3 0.12
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (20 bp):
ATTAAAATAGATAAATAAAA
Found at i:67124858 original size:8 final size:8
Alignment explanation
Indices: 67124847--67124882 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
67124837 TTCATACACT
67124847 TACACATA
1 TACACATA
67124855 TACACATA
1 TACACATA
67124863 TACACATA
1 TACACATA
67124871 TACACATA
1 TACACATA
67124879 TACA
1 TACA
67124883 TACACTCACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (8 bp):
TACACATA
Found at i:67125835 original size:15 final size:15
Alignment explanation
Indices: 67125815--67125845 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67125805 TGTAGATAGG
67125815 TAGTTTGGTGAATTT
1 TAGTTTGGTGAATTT
67125830 TAGTTTGGTGAATTT
1 TAGTTTGGTGAATTT
67125845 T
1 T
67125846 CAGATGCTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
TAGTTTGGTGAATTT
Found at i:67130599 original size:14 final size:14
Alignment explanation
Indices: 67130580--67130610 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
67130570 TATCTAAACT
67130580 ATTGGATTAGCGGC
1 ATTGGATTAGCGGC
*
67130594 ATTGGATTAGTGGC
1 ATTGGATTAGCGGC
67130608 ATT
1 ATT
67130611 ATAATTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.10, G:0.32, T:0.35
Consensus pattern (14 bp):
ATTGGATTAGCGGC
Found at i:67138265 original size:3 final size:3
Alignment explanation
Indices: 67138251--67138281 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
67138241 TAAAATTGGT
*
67138251 TTA TTA TAA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
67138282 ATAACGAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:67139005 original size:37 final size:37
Alignment explanation
Indices: 67138955--67139030 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
67138945 AAGTCTAAAC
67138955 TAGTGAATGTTAAAGCTTGAGTTCACTTATTGTATGA
1 TAGTGAATGTTAAAGCTTGAGTTCACTTATTGTATGA
*
67138992 TAGTGAATGTTAAAGCTTGAGTTCACTTGTTGTATGA
1 TAGTGAATGTTAAAGCTTGAGTTCACTTATTGTATGA
67139029 TA
1 TA
67139031 TGTTGAGATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (37 bp):
TAGTGAATGTTAAAGCTTGAGTTCACTTATTGTATGA
Found at i:67142327 original size:141 final size:142
Alignment explanation
Indices: 67142074--67142417 Score: 430
Period size: 149 Copynumber: 2.4 Consensus size: 142
67142064 TCTCACGTTC
*
67142074 GATTCCTCTCCTACTCACATTTGTATTTTTTTTATTTCATGTTGCTTCAAGCTTTTTAAATTTTT
1 GATTCCTCTCCTACTCATATTTGTA--TTTTTTATTTCATGTTGCTTCAAG-TTTTTAAATTTTT
* *
67142139 AATTAATTTTTTAACATATTAGTTCTTTGATCAGATGGTTAGATAGTT-GCA-A-CT-A-T-ATC
63 AATTAATTTTTTAACATATTAGTTCTTTCATAAGATGGTTAGATAGTTAG-ATATCTAATTAATC
*
67142198 TTTAAGTCTTGAGTTT
127 TTTAAGTCTCGAGTTT
* * *
67142214 GATTTCTCTCCTACTCATATTTGTATTTTCTATTTCATGTTGCTTAAAGTTTTTAAATTTTTTAA
1 GATTCCTCTCCTACTCATATTTGTATTTTTTATTTCATGTTGCTTCAAGTTTTTAAA-TTTTTAA
* * *
67142279 TTAATGTTTTTTTAACATTTTTGTTCTTTCATAAGATGGTTAGATAGTTAGATAGTTGTAATTAC
65 TTAA---TTTTTTAACATATTAGTTCTTTCATAAGATGGTTAGATAGTTAGATA--TCTAATTA-
67142344 ATCTTTAAGTCTCGAGTTT
124 ATCTTTAAGTCTCGAGTTT
* *
67142363 GATTCCTCTACTACTCATATTTGTAATTTTTTATTTAATGTTGCTTCAAGTTTTT
1 GATTCCTCTCCTACTCATATTTGT-ATTTTTTATTTCATGTTGCTTCAAGTTTTT
67142418 TTTAATTAAT
Statistics
Matches: 175, Mismatches: 15, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
137 8 0.05
138 33 0.19
140 23 0.13
141 39 0.22
142 2 0.01
145 1 0.01
146 1 0.01
147 1 0.01
149 40 0.23
150 27 0.15
ACGTcount: A:0.24, C:0.12, G:0.11, T:0.52
Consensus pattern (142 bp):
GATTCCTCTCCTACTCATATTTGTATTTTTTATTTCATGTTGCTTCAAGTTTTTAAATTTTTAAT
TAATTTTTTAACATATTAGTTCTTTCATAAGATGGTTAGATAGTTAGATATCTAATTAATCTTTA
AGTCTCGAGTTT
Found at i:67142574 original size:16 final size:16
Alignment explanation
Indices: 67142555--67142585 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
67142545 CAAGCTTTTA
67142555 TTTAATTATTTTTATT
1 TTTAATTATTTTTATT
67142571 TTTAATTATTTTTAT
1 TTTAATTATTTTTAT
67142586 AAGTATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTAATTATTTTTATT
Found at i:67142667 original size:21 final size:20
Alignment explanation
Indices: 67142643--67142688 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
67142633 TGATTTTATG
67142643 AATAAAATATTTAAAAATAAA
1 AATAAAATA-TTAAAAATAAA
* *
67142664 AATACATTATTAAAAATAAA
1 AATAAAATATTAAAAATAAA
67142684 AATAA
1 AATAA
67142689 TAAAAAAAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (20 bp):
AATAAAATATTAAAAATAAA
Found at i:67143167 original size:139 final size:140
Alignment explanation
Indices: 67142962--67143228 Score: 385
Period size: 139 Copynumber: 1.9 Consensus size: 140
67142952 ATATCTATCT
* * * * * *
67142962 AACTATCTAACCATCTAACGAAAGAACTAAAATGTTAAAAAACATTGATTACAAATTTAAAAAGC
1 AACTATCTAAACATCTAACCAAAAAACTAAAATATTAAAAAACATTAATTAAAAATTTAAAAAGC
67143027 TTGAAGCAACATGAAATAAAAAATACAAATATAAGTAAAAGAGAAATCGAACACGAGACTCAAAA
66 TTGAAGCAACATGAAATAAAAAATACAAATATAAGTAAAAGAGAAATCGAACACGAGACTCAAAA
67143092 ATATAGTTGC
131 ATATAGTTGC
*
67143102 AACTATCTAAACATCTAACCAAAAAAC-AAATATATT-AAAAATATTAATTAAAAATTTAAAAAG
1 AACTATCTAAACATCTAACCAAAAAACTAAA-ATATTAAAAAACATTAATTAAAAATTTAAAAAG
* * * ** * *
67143165 CTTGAAGCAACATGAAATAAAAATTACAAATGTGAGTAGGAGAGGAATCGAACCCGAGACTCAA
65 CTTGAAGCAACATGAAATAAAAAATACAAATATAAGTAAAAGAGAAATCGAACACGAGACTCAA
67143229 GGATGAAAAC
Statistics
Matches: 112, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
139 84 0.75
140 28 0.25
ACGTcount: A:0.53, C:0.13, G:0.12, T:0.22
Consensus pattern (140 bp):
AACTATCTAAACATCTAACCAAAAAACTAAAATATTAAAAAACATTAATTAAAAATTTAAAAAGC
TTGAAGCAACATGAAATAAAAAATACAAATATAAGTAAAAGAGAAATCGAACACGAGACTCAAAA
ATATAGTTGC
Found at i:67144639 original size:22 final size:22
Alignment explanation
Indices: 67144611--67144652 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
67144601 GATGTCTGTC
67144611 ATAAAGTACCAATACCTATTTT
1 ATAAAGTACCAATACCTATTTT
* *
67144633 ATAAAGTATCGATACCTATT
1 ATAAAGTACCAATACCTATT
67144653 CCAGTATGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (22 bp):
ATAAAGTACCAATACCTATTTT
Found at i:67147884 original size:5 final size:5
Alignment explanation
Indices: 67147874--67147914 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
67147864 TAAGATGTGG
* *
67147874 ATTGA ATTGA ATTGA ATTGA ATATGA ATTGT ATTAA ATTGA
1 ATTGA ATTGA ATTGA ATTGA AT-TGA ATTGA ATTGA ATTGA
67147915 GTTAAATTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (5 bp):
ATTGA
Found at i:67148418 original size:26 final size:25
Alignment explanation
Indices: 67148370--67148441 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
67148360 CCCGATATAT
*
67148370 GGCTCTTCGGAGCTTCCCGATTAAA
1 GGCTCTTCGGAGCTTCCCAATTAAA
* *
67148395 GGCTCTTTGAGAGCTTCCTAATTAATA
1 GGCTCTTCG-GAGCTTCCCAATTAA-A
* * *
67148422 -GCTCCTCAGAGCTTTCCAAT
1 GGCTCTTCGGAGCTTCCCAAT
67148442 ATTGGCTTGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
25 18 0.49
26 18 0.49
27 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.32
Consensus pattern (25 bp):
GGCTCTTCGGAGCTTCCCAATTAAA
Found at i:67156170 original size:68 final size:68
Alignment explanation
Indices: 67156003--67156178 Score: 159
Period size: 68 Copynumber: 2.6 Consensus size: 68
67155993 TAGTACCACT
* * * *
67156003 CATGCGACCTAGC--CA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT
*
67156065 CACT
65 CACA
* * *
67156069 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGCGACCTAGCTACATATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA
67156131 ATCACA
63 ATCACA
*
67156137 CATGTGACCTAGCTACTATATAGTATCTCGTAGC-CTTCTTGT
1 CATGCGACCTAGCTAC-ATATA-TATCTCGTAGCTC-TCTTGT
67156179 ACACATGATG
Statistics
Matches: 90, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
66 13 0.14
67 1 0.01
68 35 0.39
69 9 0.10
70 6 0.07
71 26 0.29
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC
ACA
Found at i:67158858 original size:43 final size:43
Alignment explanation
Indices: 67158804--67158925 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
67158794 ACCGAGATGT
* *
67158804 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATAGC
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTA-AGC
* * *
67158847 GATTATGTGTAAGACCATGTCTAGGG-CATCGGCATCGTTAATC
1 GATTACGTGTAAGACCATGTCT-GGGACATTGGCATCGTTAAGC
* * * *
67158890 GATTACGTGTAAGACCTTTTCTGAGACAGTGGCATC
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATC
67158926 AATTTGTGAT
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
42 2 0.03
43 58 0.89
44 5 0.08
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAGC
Found at i:67162710 original size:7 final size:7
Alignment explanation
Indices: 67162698--67162765 Score: 82
Period size: 7 Copynumber: 9.6 Consensus size: 7
67162688 CTTAACATCG
67162698 TCTTACT
1 TCTTACT
67162705 TCTTACT
1 TCTTACT
67162712 TCTTACT
1 TCTTACT
67162719 TCTTACT
1 TCTTACT
67162726 TCTTACT
1 TCTTACT
* *
67162733 TCTTTCCC
1 TC-TTACT
* *
67162741 CCTTTCT
1 TCTTACT
67162748 TCTTACT
1 TCTTACT
*
67162755 TCTTCCT
1 TCTTACT
67162762 TCTT
1 TCTT
67162766 TCTCATTTTC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
7 48 0.92
8 4 0.08
ACGTcount: A:0.09, C:0.34, G:0.00, T:0.57
Consensus pattern (7 bp):
TCTTACT
Found at i:67162768 original size:21 final size:21
Alignment explanation
Indices: 67162698--67162765 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
67162688 CTTAACATCG
*
67162698 TCTTACTTCTTACTTCTTACT
1 TCTTACTTCTTACTTCTTCCT
*
67162719 TCTTACTTCTTACTTCTTTCCC
1 TCTTACTTCTTACTTC-TTCCT
* *
67162741 CCTTTCTTCTTACTTCTTCCT
1 TCTTACTTCTTACTTCTTCCT
67162762 TCTT
1 TCTT
67162766 TCTCATTTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
21 23 0.57
22 17 0.43
ACGTcount: A:0.09, C:0.34, G:0.00, T:0.57
Consensus pattern (21 bp):
TCTTACTTCTTACTTCTTCCT
Found at i:67162780 original size:29 final size:29
Alignment explanation
Indices: 67162719--67162780 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
67162709 ACTTCTTACT
* *
67162719 TCTTACTTCTTACTTCTTTCCCCCTTTCT
1 TCTTACTTCTTACTTCTTTCCCACTTTCC
* * *
67162748 TCTTACTTCTTCCTTCTTTCTCATTTTCC
1 TCTTACTTCTTACTTCTTTCCCACTTTCC
67162777 TCTT
1 TCTT
67162781 CCCATCACAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.06, C:0.35, G:0.00, T:0.58
Consensus pattern (29 bp):
TCTTACTTCTTACTTCTTTCCCACTTTCC
Found at i:67172724 original size:40 final size:40
Alignment explanation
Indices: 67172669--67172747 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
67172659 CAGTTCGGTT
67172669 TCAATACAATGGCATG-TCTAACAAGCTTACAATAACATAA
1 TCAATACAATGGCATGCT-TAACAAGCTTACAATAACATAA
* * **
67172709 TCAATTCAATGGCATGCTTAACATGCTTACGGTAACATA
1 TCAATACAATGGCATGCTTAACAAGCTTACAATAACATA
67172748 TTCGGTACAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 33 0.97
41 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (40 bp):
TCAATACAATGGCATGCTTAACAAGCTTACAATAACATAA
Found at i:67175456 original size:20 final size:20
Alignment explanation
Indices: 67175403--67175456 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
67175393 AGTTTATCTG
* *
67175403 ATGGAAACTGGATATATGAA
1 ATGGAAACTGGTTAGATGAA
*
67175423 ATGGAAAATGGTTAGATGAA
1 ATGGAAACTGGTTAGATGAA
*
67175443 ATGGAAACTCGTTA
1 ATGGAAACTGGTTA
67175457 TTTGTAATGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.43, C:0.06, G:0.26, T:0.26
Consensus pattern (20 bp):
ATGGAAACTGGTTAGATGAA
Found at i:67182827 original size:54 final size:54
Alignment explanation
Indices: 67182745--67182888 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
67182735 TGGAGGAAGC
*
67182745 GTCCTGGTGGTTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
*
67182799 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
* *
67182853 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
67182889 ACTTCGTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 6 0.07
54 79 0.93
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
Found at i:67182899 original size:27 final size:27
Alignment explanation
Indices: 67182748--67182906 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
67182738 AGGAAGCGTC
* *
67182748 CTGGTGGTTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
67182775 CTGGTGGCTCTACCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
67182802 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
67182829 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
67182856 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
67182883 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
67182907 GCAGCCTCAC
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 10 0.09
27 102 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:67182900 original size:81 final size:80
Alignment explanation
Indices: 67182748--67182906 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 80
67182738 AGGAAGCGTC
* *
67182748 CTGGTGGTTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTCCTGGTGACTAT
67182813 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * *
67182829 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTACCACATATATCTGT-CCTGGTGACT
*
67182892 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
67182907 GCAGCCTCAC
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
80 17 0.25
81 51 0.75
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:67201945 original size:21 final size:23
Alignment explanation
Indices: 67201902--67201945 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
67201892 TATGTTTGGA
67201902 ATGGCATGTATATGGTGAAGTAT
1 ATGGCATGTATATGGTGAAGTAT
*
67201925 ATGGCATGT-TTTGGT-AAGTAT
1 ATGGCATGTATATGGTGAAGTAT
67201946 TGAACTAGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 5 0.25
23 9 0.45
ACGTcount: A:0.27, C:0.05, G:0.30, T:0.39
Consensus pattern (23 bp):
ATGGCATGTATATGGTGAAGTAT
Found at i:67202986 original size:79 final size:79
Alignment explanation
Indices: 67202855--67203008 Score: 200
Period size: 79 Copynumber: 1.9 Consensus size: 79
67202845 GGTACGCTTC
* * * * *
67202855 TACGTTACTCTATTGATGAAGAATATATGACATCTGATTATGTTAGATTGATTGTTACTAATTCT
1 TACGTTACTCTATTGATGAAGAATACATAACATCTGAATAGGTTAGACTGATTGTTACTAATTCT
67202920 GATTGATAACCCTT
66 GATTGATAACCCTT
* * * * * *
67202934 TACGTTACTTTGTTGATGAGGAATACATAATATCTGAATAGGTTAGACTGATTGTTATTAATTTT
1 TACGTTACTCTATTGATGAAGAATACATAACATCTGAATAGGTTAGACTGATTGTTACTAATTCT
*
67202999 GATTTATAAC
66 GATTGATAAC
67203009 TGTGCATGTG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
79 63 1.00
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.42
Consensus pattern (79 bp):
TACGTTACTCTATTGATGAAGAATACATAACATCTGAATAGGTTAGACTGATTGTTACTAATTCT
GATTGATAACCCTT
Found at i:67203530 original size:15 final size:15
Alignment explanation
Indices: 67203489--67203534 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
67203479 TCTGCTTTGC
*
67203489 TCTGTTTGGTTCTGT
1 TCTGTTCGGTTCTGT
** *
67203504 TCTACTCCGTTCTGT
1 TCTGTTCGGTTCTGT
67203519 TCTGTTCGGTTCTGT
1 TCTGTTCGGTTCTGT
67203534 T
1 T
67203535 GTACTATTGT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.02, C:0.22, G:0.22, T:0.54
Consensus pattern (15 bp):
TCTGTTCGGTTCTGT
Found at i:67210350 original size:2 final size:2
Alignment explanation
Indices: 67210345--67210373 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
67210335 GTATTGTGTG
67210345 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67210374 GAGGGGGATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67210832 original size:2 final size:2
Alignment explanation
Indices: 67210825--67210852 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
67210815 CTGATTACAA
67210825 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67210853 GAAACCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67215646 original size:11 final size:11
Alignment explanation
Indices: 67215630--67215660 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
67215620 GTAATGTTAA
67215630 AATATATACAT
1 AATATATACAT
67215641 AATATATACAT
1 AATATATACAT
67215652 ATATATATA
1 A-ATATATA
67215661 TGAAATAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATATACAT
Found at i:67215720 original size:23 final size:23
Alignment explanation
Indices: 67215628--67215725 Score: 58
Period size: 23 Copynumber: 4.1 Consensus size: 23
67215618 TAGTAATGTT
67215628 AAAATATATACATAAT-ATAT-A
1 AAAATATATACATAATAATATGA
* * *
67215649 CATATATATATATGAAATAGATATTGA
1 AAAATATATACAT--AATA-ATA-TGA
* * *
67215676 AAAACGTATGTACATGA-CATATGA
1 AAAA--TATATACATAATAATATGA
*
67215700 AAAATATATACATAATAATATTA
1 AAAATATATACATAATAATATGA
67215723 AAA
1 AAA
67215726 TAAAATAATA
Statistics
Matches: 55, Mismatches: 13, Indels: 16
0.65 0.15 0.19
Matches are distributed among these distances:
21 10 0.18
22 9 0.16
23 11 0.20
24 7 0.13
25 6 0.11
26 1 0.02
27 4 0.07
29 7 0.13
ACGTcount: A:0.55, C:0.06, G:0.07, T:0.32
Consensus pattern (23 bp):
AAAATATATACATAATAATATGA
Found at i:67215752 original size:22 final size:21
Alignment explanation
Indices: 67215711--67215767 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
67215701 AAATATATAC
67215711 ATAATAA-TATTAA-AAT-AAA
1 ATAATAAGTA-TAATAATGAAA
67215730 ATAATAAGTGATAATAATGAAA
1 ATAATAAGT-ATAATAATGAAA
*
67215752 ATAATAGGTATAATAA
1 ATAATAAGTATAATAA
67215768 ATAATATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 7 0.21
20 4 0.12
21 11 0.33
22 11 0.33
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (21 bp):
ATAATAAGTATAATAATGAAA
Found at i:67215776 original size:21 final size:22
Alignment explanation
Indices: 67215723--67215777 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
67215713 AATAATATTA
67215723 AAATAAAATAATAAGTGATAAT
1 AAATAAAATAATAAGTGATAAT
*
67215745 -AATGAAAATAATAGGT-ATAAT
1 AAAT-AAAATAATAAGTGATAAT
*
67215766 AAATAATATAAT
1 AAATAAAATAAT
67215778 GATATATGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 15 0.52
22 14 0.48
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (22 bp):
AAATAAAATAATAAGTGATAAT
Found at i:67216016 original size:87 final size:87
Alignment explanation
Indices: 67215897--67216229 Score: 553
Period size: 87 Copynumber: 3.8 Consensus size: 87
67215887 ATATATAAAC
* * *
67215897 TGAAAATACCTCAACGTG-TCTTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTCTAAAA
1 TGAAAATACCTCAGCGTGTTC-TGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTCTGAAA
** *
67215961 ACTGAAATTTGAAAAAGAGAAAT
65 ACAAAAATTTGAAAAATAGAAAT
67215984 TGAAAATACCTCAGCGTGTTCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTCTGAAAA
1 TGAAAATACCTCAGCGTGTTCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTCTGAAAA
67216049 CAAAAATTTGAAAAATAGAAAT
66 CAAAAATTTGAAAAATAGAAAT
*
67216071 TAAAAATACCTCAGCGTGTTCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTCTGAAAA
1 TGAAAATACCTCAGCGTGTTCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTCTGAAAA
*
67216136 CAAAAATTTTAAAAATAGAAAT
66 CAAAAATTTGAAAAATAGAAAT
67216158 TGAAAATACCTCAGCGTGTTCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTT-TGAAA
1 TGAAAATACCTCAGCGTGTTCTGAGGCTCAACTCACTTCTCGCAATATGAGTTG-ATTTCTGAAA
*
67216222 ACAGAAAT
65 ACAAAAAT
67216230 AAAAACATCA
Statistics
Matches: 234, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
87 228 0.97
88 6 0.03
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (87 bp):
TGAAAATACCTCAGCGTGTTCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTCTGAAAA
CAAAAATTTGAAAAATAGAAAT
Found at i:67217056 original size:5 final size:5
Alignment explanation
Indices: 67217026--67217054 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
67217016 CATCCTAATC
67217026 CTTTT CTTTT CTTTT CTTTT CTTTT -TTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
67217055 TTCAAGCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
CTTTT
Found at i:67225806 original size:24 final size:24
Alignment explanation
Indices: 67225775--67225821 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
67225765 CTTTTGGTCT
* *
67225775 GTTTCTTTT-TTGTTTTTCTTGCC
1 GTTTCTTTTATTATTTTACTTGCC
67225798 GTTTGCTTTTATTATTTTACTTGC
1 GTTT-CTTTTATTATTTTACTTGC
67225822 TCCAGTGGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 5 0.25
25 11 0.55
ACGTcount: A:0.06, C:0.15, G:0.13, T:0.66
Consensus pattern (24 bp):
GTTTCTTTTATTATTTTACTTGCC
Found at i:67226194 original size:6 final size:6
Alignment explanation
Indices: 67226183--67226214 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
67226173 CACTAAAATC
67226183 ATTCCA ATTCCA ATTCCA ATTCCA ATTCCA AT
1 ATTCCA ATTCCA ATTCCA ATTCCA ATTCCA AT
67226215 ATGAATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (6 bp):
ATTCCA
Done.