Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 203 of 343
Found at i:67230447 original size:20 final size:20
Alignment explanation
Indices: 67230410--67230448 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
67230400 AAATTCTAAA
**
67230410 AAGATAAATACATTTAATTG
1 AAGATAAATACAGATAATTG
*
67230430 AAGATAAATAGAGATAATT
1 AAGATAAATACAGATAATT
67230449 AAAATAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.54, C:0.03, G:0.13, T:0.31
Consensus pattern (20 bp):
AAGATAAATACAGATAATTG
Found at i:67230467 original size:19 final size:18
Alignment explanation
Indices: 67230443--67230486 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
67230433 ATAAATAGAG
67230443 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
67230463 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
67230480 ATAATTA
1 ATAATTA
67230487 TCCTAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:67230502 original size:15 final size:15
Alignment explanation
Indices: 67230482--67230514 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
67230472 TAATCCTAAT
67230482 AATTATCCTAATATA
1 AATTATCCTAATATA
67230497 AATTATCCTAATATA
1 AATTATCCTAATATA
67230512 AAT
1 AAT
67230515 AAAATGGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (15 bp):
AATTATCCTAATATA
Found at i:67249083 original size:124 final size:124
Alignment explanation
Indices: 67248857--67249091 Score: 317
Period size: 124 Copynumber: 1.9 Consensus size: 124
67248847 CCTGAAGTTG
* * * * ** **
67248857 CAGTGGAGCAGATTGAAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGTTG
1 CAGTGGAGCAGACTAAAAATTGCAGATATTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACG
* * * *
67248922 GCGAATCTTATCTCCATAAATCGACAATGGAGTAAATTTAAGCCACCAACCTTGTCTCC
66 GCGAATCTTATCCCCATAAAGCGACAATGAAGCAAATTTAAGCCACCAACCTTGTCTCC
*
67248981 CAGTGGAGCAGACTAAAAATTGTAGATATTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACG
1 CAGTGGAGCAGACTAAAAATTGCAGATATTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACG
* ** *
67249046 GTGAATCTTATCCCCATGTAGCGGCAATGAAGCAAATTTAAGCCAC
66 GCGAATCTTATCCCCATAAAGCGACAATGAAGCAAATTTAAGCCAC
67249092 AAGTCTTATC
Statistics
Matches: 94, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
124 94 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (124 bp):
CAGTGGAGCAGACTAAAAATTGCAGATATTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACG
GCGAATCTTATCCCCATAAAGCGACAATGAAGCAAATTTAAGCCACCAACCTTGTCTCC
Found at i:67253854 original size:104 final size:104
Alignment explanation
Indices: 67253674--67253883 Score: 420
Period size: 104 Copynumber: 2.0 Consensus size: 104
67253664 ATCATCAGTA
67253674 AAGATTATATCCGATCCAGCAGCTATATCCGAGGAATTATTGTATGTTGCTGATGGGTTCAACTT
1 AAGATTATATCCGATCCAGCAGCTATATCCGAGGAATTATTGTATGTTGCTGATGGGTTCAACTT
67253739 TGCCAATAAAAATCTTGCCTGCACAAGGAAATCAAAATT
66 TGCCAATAAAAATCTTGCCTGCACAAGGAAATCAAAATT
67253778 AAGATTATATCCGATCCAGCAGCTATATCCGAGGAATTATTGTATGTTGCTGATGGGTTCAACTT
1 AAGATTATATCCGATCCAGCAGCTATATCCGAGGAATTATTGTATGTTGCTGATGGGTTCAACTT
67253843 TGCCAATAAAAATCTTGCCTGCACAAGGAAATCAAAATT
66 TGCCAATAAAAATCTTGCCTGCACAAGGAAATCAAAATT
67253882 AA
1 AA
67253884 CAAATATATA
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 106 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (104 bp):
AAGATTATATCCGATCCAGCAGCTATATCCGAGGAATTATTGTATGTTGCTGATGGGTTCAACTT
TGCCAATAAAAATCTTGCCTGCACAAGGAAATCAAAATT
Found at i:67262025 original size:19 final size:20
Alignment explanation
Indices: 67262001--67262051 Score: 70
Period size: 21 Copynumber: 2.6 Consensus size: 20
67261991 ATTAAGTCCT
67262001 TTTTGGGAAAA-GTGATTAA
1 TTTTGGGAAAATGTGATTAA
*
67262020 TTTTGGAAAATATGTGATTAA
1 TTTTGGGAAA-ATGTGATTAA
67262041 TTTT-GGAAAAT
1 TTTTGGGAAAAT
67262052 ATCTTCATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 11 0.39
20 5 0.18
21 12 0.43
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (20 bp):
TTTTGGGAAAATGTGATTAA
Found at i:67262038 original size:21 final size:21
Alignment explanation
Indices: 67262012--67262053 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
67262002 TTTGGGAAAA
67262012 GTGATTAATTTTGGAAAATAT
1 GTGATTAATTTTGGAAAATAT
67262033 GTGATTAATTTTGGAAAATAT
1 GTGATTAATTTTGGAAAATAT
67262054 CTTCATTGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (21 bp):
GTGATTAATTTTGGAAAATAT
Found at i:67262681 original size:27 final size:27
Alignment explanation
Indices: 67262633--67262737 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
67262623 GCGAGGCTGC
* *
67262633 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
67262660 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
67262686 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
67262713 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
67262738 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 8 0.11
27 60 0.85
28 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:67264356 original size:26 final size:26
Alignment explanation
Indices: 67264326--67264407 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
67264316 TGAAATTCCC
67264326 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
67264352 ATCATGAAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
67264378 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
67264404 ATCA
1 ATCA
67264408 ATTTGTATCA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:67264817 original size:25 final size:25
Alignment explanation
Indices: 67264789--67264841 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
67264779 TCATGAAAGA
67264789 TAAATTTTACCTATGACTAGGTATT
1 TAAATTTTACCTATGACTAGGTATT
*
67264814 TAAATTTTACCTATGACTCGGTATT
1 TAAATTTTACCTATGACTAGGTATT
67264839 TAA
1 TAA
67264842 TTCAAATTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.43
Consensus pattern (25 bp):
TAAATTTTACCTATGACTAGGTATT
Found at i:67266561 original size:6 final size:6
Alignment explanation
Indices: 67266545--67266575 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
67266535 TAAGTTTCCA
*
67266545 AAAATG GAAATG AAAATG AAAATG AAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG A
67266576 TCCATTTGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:67269657 original size:26 final size:24
Alignment explanation
Indices: 67269601--67269657 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 24
67269591 CAAGACACAT
*
67269601 AGCATAATAACCAAAATGAACTTA
1 AGCATAATAAACAAAATGAACTTA
67269625 AGTCATAATCAAACAAAACTGAA-TTCA
1 AG-CATAAT-AAACAAAA-TGAACTT-A
67269652 AGCATA
1 AGCATA
67269658 GAAGTTAGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
24 2 0.07
25 6 0.21
26 13 0.46
27 7 0.25
ACGTcount: A:0.53, C:0.18, G:0.09, T:0.21
Consensus pattern (24 bp):
AGCATAATAAACAAAATGAACTTA
Found at i:67273833 original size:210 final size:210
Alignment explanation
Indices: 67273471--67273849 Score: 677
Period size: 210 Copynumber: 1.8 Consensus size: 210
67273461 ATTCCGTGGA
* **
67273471 AGACGGCAAAGATTTGAGATCGAGGAAAAAAGTGCGTTTGAACCTTAGGAATAGATTAGGATACA
1 AGACGGCAAAGATGTGAGATCGAGGAAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGGATACA
* *
67273536 AGTGACATGTCACTGGGATATTTGGGCATTCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
66 AGTGACATGTCACTGGGATATTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
* *
67273601 ATGCGAGCGTCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTC
131 ATGCGAACGCCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTC
67273666 GTTGAGTTGAGTCCG
196 GTTGAGTTGAGTCCG
67273681 AGACGGCAAAGATGTGAGATCGAGGAAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGGATACA
1 AGACGGCAAAGATGTGAGATCGAGGAAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGGATACA
67273746 AGTGACATGTCACTGGGATATTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66 AGTGACATGTCACTGGGATATTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
* *
67273811 ATGCGAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCG
131 ATGCGAACGCCCAAACTCGTTGAGTTGAGTCCGAGTTCG
67273850 CTTATGGGCG
Statistics
Matches: 160, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
210 160 1.00
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (210 bp):
AGACGGCAAAGATGTGAGATCGAGGAAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGGATACA
AGTGACATGTCACTGGGATATTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
ATGCGAACGCCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTC
GTTGAGTTGAGTCCG
Found at i:67282647 original size:17 final size:17
Alignment explanation
Indices: 67282625--67282659 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
67282615 CTCCCGGAAG
67282625 ATAGAAACATAGATGTA
1 ATAGAAACATAGATGTA
67282642 ATAGAAACATAGATGTA
1 ATAGAAACATAGATGTA
67282659 A
1 A
67282660 CTAACTCGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (17 bp):
ATAGAAACATAGATGTA
Found at i:67285452 original size:35 final size:35
Alignment explanation
Indices: 67285279--67285446 Score: 232
Period size: 35 Copynumber: 4.8 Consensus size: 35
67285269 TACTGAGTTG
* *
67285279 TGAAACTTAGGTATGGTATTATCCATACTGAGCTA
1 TGAAACGTAGGTATGGTATTATCCATACCGAGCTA
*
67285314 TGACACGTAGGTATGGTATTATCCATACCGAGCTA
1 TGAAACGTAGGTATGGTATTATCCATACCGAGCTA
*
67285349 T-AATATGTAGGTATGGTATTATCCATACCGAGCTA
1 TGAA-ACGTAGGTATGGTATTATCCATACCGAGCTA
* * *
67285384 T-AATACGTAGGTATTGTATTTTCCATACCGAGTTA
1 TGAA-ACGTAGGTATGGTATTATCCATACCGAGCTA
*
67285419 TGAAACGTAGGTATGGTATTAACCATAC
1 TGAAACGTAGGTATGGTATTATCCATAC
67285447 TGAGTTGTGA
Statistics
Matches: 119, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
34 1 0.01
35 116 0.97
36 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (35 bp):
TGAAACGTAGGTATGGTATTATCCATACCGAGCTA
Found at i:67288150 original size:56 final size:56
Alignment explanation
Indices: 67288064--67288254 Score: 310
Period size: 56 Copynumber: 3.4 Consensus size: 56
67288054 CTCTGGCATT
* *
67288064 GATATATGTGTGCGAGGAAGACCATGTTTAATACGTTGGCATTGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCC
* *
67288120 GATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCC
* *
67288176 GATATATGTGTACGAGTAAGACCATGTTTAATATGTTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCC
* *
67288232 GATTTATGTGTGTGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
67288255 CTATCTGGGA
Statistics
Matches: 124, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 124 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCC
Found at i:67288272 original size:56 final size:55
Alignment explanation
Indices: 67288064--67288283 Score: 194
Period size: 56 Copynumber: 3.9 Consensus size: 55
67288054 CTCTGGCATT
* * * * *
67288064 GATATATGTGTGCGAGGAAGACCATGTTTAATAC-GTTGGCATTGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCCT-ATTAAAACAG-TGGCATCGATATGTGACTCC
* *
67288120 GATATATGTGTGCGAGTAAGACCACGT-TTAATACATTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACC-C-TATTAAAACAGTGGCATCGATATGTGACTCC
* * * * *
67288176 GATATATGTGTACGAGTAAGACCATGTTTAATA-TGTTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCCT-ATTAAAACAG-TGGCATCGATATGTGACTCC
* * *** *
67288232 GATTTATGTGTGTGAGTAAGACCCTATCTGGGACAGTGGCATCAATATGTGA
1 GATATATGTGTGCGAGTAAGACCCTAT-TAAAACAGTGGCATCGATATGTGA
67288284 TTACATGAAA
Statistics
Matches: 138, Mismatches: 18, Indels: 16
0.80 0.10 0.09
Matches are distributed among these distances:
54 1 0.01
55 1 0.01
56 134 0.97
57 1 0.01
58 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (55 bp):
GATATATGTGTGCGAGTAAGACCCTATTAAAACAGTGGCATCGATATGTGACTCC
Found at i:67288272 original size:112 final size:112
Alignment explanation
Indices: 67288064--67288283 Score: 309
Period size: 112 Copynumber: 2.0 Consensus size: 112
67288054 CTCTGGCATT
* *
67288064 GATATATGTGTGCGAGGAAGACCATGTTTAATACGTTGGCATTGATATGTGACTCCGATATATGT
1 GATATATGTGTACGAGGAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCCGATATATGT
* * *
67288129 GTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGACTCC
66 GTGCGAGTAAGACCACGTTTAAGACAGTGGCATCAATATGTGACTCC
* * *
67288176 GATATATGTGTACGAGTAAGACCATGTTTAATATGTTGGCATCGATATGTGACTCCGATTTATGT
1 GATATATGTGTACGAGGAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCCGATATATGT
* **
67288241 GTGTGAGTAAGACC-C-TATCTGGGACAGTGGCATCAATATGTGA
66 GTGCGAGTAAGACCACGT-T-TAAGACAGTGGCATCAATATGTGA
67288284 TTACATGAAA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
110 1 0.01
111 2 0.02
112 92 0.97
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (112 bp):
GATATATGTGTACGAGGAAGACCATGTTTAATACGTTGGCATCGATATGTGACTCCGATATATGT
GTGCGAGTAAGACCACGTTTAAGACAGTGGCATCAATATGTGACTCC
Found at i:67305927 original size:30 final size:30
Alignment explanation
Indices: 67305870--67305927 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
67305860 TAGGCACTTC
* *
67305870 CACACGGGTGATCTACATGCCCATGTGTGA
1 CACACGGGTGAGCTACACGCCCATGTGTGA
*
67305900 CACACGGGTAGAGC-ACACGCCCGTGTGT
1 CACACGGGT-GAGCTACACGCCCATGTGT
67305928 CTTGGCCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (30 bp):
CACACGGGTGAGCTACACGCCCATGTGTGA
Found at i:67307851 original size:24 final size:26
Alignment explanation
Indices: 67307820--67307870 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
67307810 TTTTAGGATT
67307820 GTTCTCTTTATC-T-TTTAGGGTTTA
1 GTTCTCTTTATCATATTTAGGGTTTA
*
67307844 GTTCTCTTTTTCATAGTTTAGGGTTTA
1 GTTCTCTTTATCATA-TTTAGGGTTTA
67307871 ATTTCTTGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 11 0.48
25 1 0.04
27 11 0.48
ACGTcount: A:0.14, C:0.12, G:0.18, T:0.57
Consensus pattern (26 bp):
GTTCTCTTTATCATATTTAGGGTTTA
Found at i:67310396 original size:20 final size:20
Alignment explanation
Indices: 67310341--67310401 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
67310331 GTATTGTCTA
67310341 GTAAATCCTTAGAAATTTTG
1 GTAAATCCTTAGAAATTTTG
**
67310361 GTATAA-CCTTTTAAATTTTG
1 GTA-AATCCTTAGAAATTTTG
*
67310381 GTAAATCCATAGAAATTTTG
1 GTAAATCCTTAGAAATTTTG
67310401 G
1 G
67310402 CATGCCAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
19 2 0.06
20 30 0.88
21 2 0.06
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (20 bp):
GTAAATCCTTAGAAATTTTG
Found at i:67310468 original size:20 final size:20
Alignment explanation
Indices: 67310443--67310560 Score: 80
Period size: 20 Copynumber: 5.8 Consensus size: 20
67310433 AGCACCAAGA
67310443 AAATCTTTAAAAATATTGGT
1 AAATCTTTAAAAATATTGGT
*
67310463 AAATCTTTAAAAGTATTGGT
1 AAATCTTTAAAAATATTGGT
** *
67310483 AAAT-TCTTATAATTTTTTGGT
1 AAATCT-TTA-AAAATATTGGT
*
67310504 AAGA-CTTTATAAAT-TTAGGT
1 AA-ATCTTTAAAAATATT-GGT
** * *
67310524 AAATCCCTAGAAATACTGGT
1 AAATCTTTAAAAATATTGGT
* *
67310544 AAATCCTTAGAAATATT
1 AAATCTTTAAAAATATT
67310561 AGTATCCAGA
Statistics
Matches: 78, Mismatches: 13, Indels: 14
0.74 0.12 0.13
Matches are distributed among these distances:
19 4 0.05
20 58 0.74
21 14 0.18
22 2 0.03
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (20 bp):
AAATCTTTAAAAATATTGGT
Found at i:67310699 original size:20 final size:21
Alignment explanation
Indices: 67310643--67310701 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 21
67310633 TTGTATAACC
* *
67310643 TTAAAAATTTTGATAAA-TCT
1 TTAAATATTTTAATAAATTCT
* *
67310663 TTAAATATTTGATTAAATTC-
1 TTAAATATTTTAATAAATTCT
*
67310683 TTAATTATTTTAATAAATT
1 TTAAATATTTTAATAAATT
67310702 ATTAGAAATG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
20 29 0.94
21 2 0.06
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.51
Consensus pattern (21 bp):
TTAAATATTTTAATAAATTCT
Found at i:67312347 original size:88 final size:88
Alignment explanation
Indices: 67312236--67312400 Score: 244
Period size: 88 Copynumber: 1.9 Consensus size: 88
67312226 GCACTGTCTG
* *
67312236 GTGTGATATTTGTATGTGTTTCATGGAAGCATTGAGAGAACAGGAAGGTTACCTGT-C-CAAAGA
1 GTGTGATATTTGGATGTGTTTCATGGAAGCACTGAGAGAACAGGAAGGTTACCTGTCCTCAAAGA
67312299 GAAAAGAGAAAAGGGTTACTGACCA
66 G--AAGAGAAAAGGGTTACTGACCA
* * **
67312324 GTGTGATATTTGGATGTGTTTCATGGAGGCACTGAGTGAACAGGAAGGTTAGTTGTCCTCAAAGA
1 GTGTGATATTTGGATGTGTTTCATGGAAGCACTGAGAGAACAGGAAGGTTACCTGTCCTCAAAGA
67312389 GAAGAGAAAAGG
66 GAAGAGAAAAGG
67312401 AAGGTTATAG
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
88 61 0.88
89 1 0.01
90 7 0.10
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.25
Consensus pattern (88 bp):
GTGTGATATTTGGATGTGTTTCATGGAAGCACTGAGAGAACAGGAAGGTTACCTGTCCTCAAAGA
GAAGAGAAAAGGGTTACTGACCA
Found at i:67315392 original size:2 final size:2
Alignment explanation
Indices: 67315385--67315415 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
67315375 TTCTGACATA
*
67315385 AC AC AC AC AC AC AG AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
67315416 AACAACCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.45, G:0.03, T:0.00
Consensus pattern (2 bp):
AC
Found at i:67317925 original size:9 final size:9
Alignment explanation
Indices: 67317909--67317941 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
67317899 ATAATTAGAA
67317909 AATTAATTT
1 AATTAATTT
*
67317918 AGTTAATTT
1 AATTAATTT
67317927 AATTAA-TT
1 AATTAATTT
67317935 AATTAAT
1 AATTAAT
67317942 AATATTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (9 bp):
AATTAATTT
Found at i:67320953 original size:5 final size:5
Alignment explanation
Indices: 67320943--67320967 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
67320933 TTTTTGAGGG
67320943 ATTAA ATTAA ATTAA ATTAA ATTAA
1 ATTAA ATTAA ATTAA ATTAA ATTAA
67320968 TTAGGAAGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATTAA
Found at i:67322188 original size:16 final size:16
Alignment explanation
Indices: 67322167--67322199 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
67322157 TTCATGTTTT
67322167 AATTATAA-AATAATTA
1 AATTATAATAA-AATTA
67322183 AATTATAATAAAATTA
1 AATTATAATAAAATTA
67322199 A
1 A
67322200 GAACATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AATTATAATAAAATTA
Found at i:67325471 original size:23 final size:23
Alignment explanation
Indices: 67325441--67325495 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
67325431 ATTTTGAACT
67325441 TCTGATAATTTATACATAAAACA
1 TCTGATAATTTATACATAAAACA
67325464 TCTGATAATTTATACATAAAACA
1 TCTGATAATTTATACATAAAACA
*
67325487 TCTGCTAAT
1 TCTGATAAT
67325496 AAATATTGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (23 bp):
TCTGATAATTTATACATAAAACA
Found at i:67330820 original size:46 final size:44
Alignment explanation
Indices: 67330730--67330848 Score: 134
Period size: 46 Copynumber: 2.6 Consensus size: 44
67330720 TGTGTGCTAG
67330730 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATC-G-CACATTATGAGAGCCAA
*
67330776 TGTAAGACATGTCTGGGACATGCATCG-ACATTGA-GACGAAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGCACATT-ATGA-G--AGCCAA
* * *
67330822 TATAAGACATGCCTGAGACATGCATCG
1 TGTAAGACATGTCTGGGACATGCATCG
67330849 GCCTCGAGAT
Statistics
Matches: 65, Mismatches: 4, Indels: 8
0.84 0.05 0.10
Matches are distributed among these distances:
43 7 0.11
44 2 0.03
45 1 0.02
46 55 0.85
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCGCACATTATGAGAGCCAA
Found at i:67330920 original size:92 final size:90
Alignment explanation
Indices: 67330719--67330921 Score: 194
Period size: 92 Copynumber: 2.2 Consensus size: 90
67330709 TTTAGGTGAT
* * * *
67330719 ATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAATGTAAGAC
1 ATGTGT-C-AGTGTAAGACATGCCTGAGACATGCATCGGCCACAATATGAGAGCCAATGTAAAAC
*
67330784 ATGTCTGGGACATGCATCGACATTGAG
64 ATGTCTGGGACATGCATCGACATTGAC
* * * * * * *
67330811 ACGAAAGCCAGTATAAGACATGCCTGAGACATGCATCGGCCTCGAGATATGCA-AGCTAGTGTAA
1 ATG--TGTCAGTGTAAGACATGCCTGAGACATGCATCGGCCAC-A-ATATG-AGAGCCAATGTAA
* *
67330875 AACCTGTCTGGGACATGGCATCGGC-TTGAC
61 AACATGTCTGGGACAT-GCATCGACATTGAC
67330905 ATGTGTCAGTGTAAGAC
1 ATGTGTCAGTGTAAGAC
67330922 CTGTCTAGGA
Statistics
Matches: 87, Mismatches: 18, Indels: 12
0.74 0.15 0.10
Matches are distributed among these distances:
92 43 0.49
93 2 0.02
94 34 0.39
95 8 0.09
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (90 bp):
ATGTGTCAGTGTAAGACATGCCTGAGACATGCATCGGCCACAATATGAGAGCCAATGTAAAACAT
GTCTGGGACATGCATCGACATTGAC
Found at i:67335985 original size:23 final size:23
Alignment explanation
Indices: 67335929--67335986 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
67335919 CCAATAGCAG
*
67335929 ACTTTTGTTACTAGTAATACATT
1 ACTTTTGTTATTAGTAATACATT
* * * *
67335952 ACTTCTGTTATTAGTACTTCGTT
1 ACTTTTGTTATTAGTAATACATT
67335975 ACTTTTGTTATT
1 ACTTTTGTTATT
67335987 GACACTTTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.22, C:0.14, G:0.10, T:0.53
Consensus pattern (23 bp):
ACTTTTGTTATTAGTAATACATT
Found at i:67338715 original size:19 final size:20
Alignment explanation
Indices: 67338688--67338726 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
67338678 TTCATTGTTA
*
67338688 TTAATTTGTGTTGCA-ATTT
1 TTAAATTGTGTTGCATATTT
*
67338707 TTAAATTGTTTTGCATATTT
1 TTAAATTGTGTTGCATATTT
67338727 ATTTGAATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.23, C:0.05, G:0.13, T:0.59
Consensus pattern (20 bp):
TTAAATTGTGTTGCATATTT
Found at i:67343630 original size:26 final size:26
Alignment explanation
Indices: 67343559--67343635 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
67343549 ACATATTTTC
* * * *
67343559 TCAAACTTTTACTAGAGGTAAATTCT
1 TCAAAATTTTACTAGGGGTAAAATCA
* *
67343585 TCAAAAAATTTAC-CGAGGGTAAAATCA
1 TC-AAAATTTTACTAG-GGGTAAAATCA
67343612 TCAAAATTTTACTAGGGGTAAAAT
1 TCAAAATTTTACTAGGGGTAAAAT
67343636 AAGGATGTAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 21 0.52
27 19 0.47
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.31
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATCA
Found at i:67353342 original size:8 final size:8
Alignment explanation
Indices: 67353329--67353354 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
67353319 AAAAATTTAG
67353329 AATAATAA
1 AATAATAA
67353337 AATAATAA
1 AATAATAA
67353345 AATAATAA
1 AATAATAA
67353353 AA
1 AA
67353355 GCTGATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AATAATAA
Found at i:67358725 original size:15 final size:15
Alignment explanation
Indices: 67358705--67358734 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
67358695 TTAAATACTT
67358705 AATCAAAATTTTCTA
1 AATCAAAATTTTCTA
67358720 AATCAAAATTTTCTA
1 AATCAAAATTTTCTA
67358735 GTTTAGTCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (15 bp):
AATCAAAATTTTCTA
Found at i:67363278 original size:32 final size:33
Alignment explanation
Indices: 67363242--67363364 Score: 126
Period size: 33 Copynumber: 3.8 Consensus size: 33
67363232 TACACTTGAG
*
67363242 GTGTACAT-TCCTTTCCAAGTGGTACACACAAA
1 GTGTACATAACCTTTCCAAGTGGTACACACAAA
* ** * *
67363274 GTGTACCTTTCCTTTTCATA-TGGTATACACAAA
1 GTGTACATAACCTTTCCA-AGTGGTACACACAAA
* *
67363307 GTATACCTAACCTTTCCAAGT-GTACACACAAA
1 GTGTACATAACCTTTCCAAGTGGTACACACAAA
* *
67363339 GTGTACATAACCTTTTCAAGTCGTAC
1 GTGTACATAACCTTTCCAAGTGGTAC
67363365 CATTTGGGTA
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
32 36 0.47
33 39 0.51
34 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (33 bp):
GTGTACATAACCTTTCCAAGTGGTACACACAAA
Found at i:67367731 original size:48 final size:48
Alignment explanation
Indices: 67367668--67368284 Score: 1126
Period size: 48 Copynumber: 12.9 Consensus size: 48
67367658 TATATATGTG
* *
67367668 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
67367716 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
67367764 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
67367812 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
67367860 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
67367908 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
67367956 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATAAGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
67368004 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
67368052 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
67368100 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
67368148 TGTGGTAAAGCCGAATGGCTAGTGAGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
67368196 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGCATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
67368244 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
67368285 GTGTGTATAT
Statistics
Matches: 552, Mismatches: 17, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 552 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:67368475 original size:37 final size:37
Alignment explanation
Indices: 67368425--67368527 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
67368415 GGAAATATAT
67368425 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
67368462 TCCGGGCAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
67368499 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
67368528 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:67370906 original size:13 final size:13
Alignment explanation
Indices: 67370890--67370947 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
67370880 TCACATTTCT
67370890 ATTTCAAGA-ATCC
1 ATTTCAA-ATATCC
67370903 ATTTCAAATATCC
1 ATTTCAAATATCC
* *
67370916 ATTTTCATATAACC
1 A-TTTCAAATATCC
**
67370930 ATTTCTTATATCC
1 ATTTCAAATATCC
67370943 ATTTC
1 ATTTC
67370948 CACAGTATGA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
12 1 0.03
13 27 0.69
14 11 0.28
ACGTcount: A:0.33, C:0.22, G:0.02, T:0.43
Consensus pattern (13 bp):
ATTTCAAATATCC
Found at i:67373120 original size:6 final size:6
Alignment explanation
Indices: 67373102--67373226 Score: 105
Period size: 6 Copynumber: 20.3 Consensus size: 6
67373092 AAGAAACATT
* *
67373102 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
67373151 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
*
67373200 ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
67373227 GTGAGTGCAA
Statistics
Matches: 96, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
5 6 0.06
6 78 0.81
7 9 0.09
8 3 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:67373153 original size:31 final size:31
Alignment explanation
Indices: 67373116--67373226 Score: 177
Period size: 31 Copynumber: 3.6 Consensus size: 31
67373106 GAACTAGAAT
* * * *
67373116 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
67373147 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
67373178 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
67373209 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
67373227 GTGAGTGCAA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 76 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:67373183 original size:19 final size:19
Alignment explanation
Indices: 67373159--67373216 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
67373149 GAATCAGAAT
67373159 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
67373178 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
67373190 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
67373209 CAGAATCA
1 CAGAATCA
67373217 AAATCAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:67373678 original size:27 final size:27
Alignment explanation
Indices: 67373646--67373904 Score: 254
Period size: 27 Copynumber: 9.6 Consensus size: 27
67373636 TACCCCATAA
* *
67373646 GGGTATCTCGATAATTCTACCTTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
67373673 GAGTATTTC-AGTAATTCTACCCTATAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
* * *
67373700 GGGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
* *
67373727 GGGTATTTCGGTAATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
67373754 GGGTATTT-TAGTAATTCTACCTTATAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
67373781 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
67373808 GGGTATTTC-AGTATTTCTACCCTACAA
1 GGGTATTTCGA-TAATTCTACCCTACAG
* * * *
67373835 AGGTATTTCGGTACTTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
** * *
67373862 GGGTATTTCGGCATTTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
*
67373889 GGGTATTTCGGTAATT
1 GGGTATTTCGATAATT
67373905 TTGTAAATCG
Statistics
Matches: 196, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.01
27 195 0.99
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:67373760 original size:81 final size:81
Alignment explanation
Indices: 67373644--67373904 Score: 360
Period size: 81 Copynumber: 3.2 Consensus size: 81
67373634 TTTACCCCAT
* * * *
67373644 AAGGGTATCTCGATAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
67373709 GGTATTTCTACCCTAC
66 GGTATTTCTACCCTAC
* * *
67373725 AAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCTTATAGGGGTATTTC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
*
67373790 GGTAATTCTACCCTAC
66 GGTATTTCTACCCTAC
* * * ** * * * *
67373806 AGGGGTATTTCAGTATTTCTACCCTACAAAGGTATTTCGGTACTTCTACCCTACAAGGGTATTTC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
*
67373871 GGCATTTCTACCCTAC
66 GGTATTTCTACCCTAC
67373887 AAGGGTATTTCGGTAATT
1 AAGGGTATTTCGGTAATT
67373905 TTGTAAATCG
Statistics
Matches: 155, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 155 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (81 bp):
AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
GGTATTTCTACCCTAC
Found at i:67373918 original size:27 final size:27
Alignment explanation
Indices: 67373886--67374283 Score: 318
Period size: 27 Copynumber: 14.7 Consensus size: 27
67373876 TTCTACCCTA
* **
67373886 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** * **
67373913 CGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
67373940 CAAGCGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*** **
67373967 CCAA-GGTATTTCAATAATTTTACAGGT
1 -CAAGGGTATTTTGGTAATTTTACAAAT
* * *
67373994 CGAGGGTATTTTAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
67374021 TAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
67374047 CTAGGGGTATTTTGATAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
*
67374075 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
67374101 CTAGGGGTATTTTGGTAATTTTATAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * *
67374129 CAAAGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
67374156 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
67374183 CAATGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
67374209 CCAGAGGTATTTTGGTGATTTTATAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* * *
67374237 CAAGGGTACTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
67374264 CAGGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
67374284 GGTAAACTAA
Statistics
Matches: 302, Mismatches: 61, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
26 5 0.02
27 289 0.96
28 8 0.03
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:67374034 original size:81 final size:81
Alignment explanation
Indices: 67373949--67374283 Score: 395
Period size: 81 Copynumber: 4.1 Consensus size: 81
67373939 TCAAGCGTAC
* * ***
67373949 TTTGGTAATTTTACAAGTCCA-AGGTATTTCAATAATTTTACAGGTC-GAGGGTATTTTAGTAAT
1 TTTGGTAATTTTACAA-ACCAGAGGTATTTTAATAATTTTACAAACCAG-GGGTATTTTAGTAAT
* **
67374012 TTCACAAATTAGGGGTAT
64 TTTACAAACCAGGGGTAT
* * * *
67374030 TTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 TTTGGTAATTTTACAAACCAGAGGTATTTTAATAATTTTACAAACCAGGGGTATTTTAGTAATTT
*
67374095 TACAAACTAGGGGTAT
66 TACAAACCAGGGGTAT
* * * *
67374111 TTTGGTAATTTTATAAACCAAAGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 TTTGGTAATTTTACAAACCAGAGGTATTTTAATAATTTTACAAACCAGGGGTATTTTAGTAATTT
** **
67374176 TGTAAACCAATGGTAT
66 TACAAACCAGGGGTAT
** * * * *
67374192 TTTGGTAATTTTACAAACCAGAGGTATTTTGGTGATTTTATAAACCAAGGGTACTTTAGTAATTT
1 TTTGGTAATTTTACAAACCAGAGGTATTTTAATAATTTTACAAACCAGGGGTATTTTAGTAATTT
67374257 TACAAACCAGGGGTAT
66 TACAAACCAGGGGTAT
67374273 TTTGGTAATTT
1 TTTGGTAATTT
67374284 GGTAAACTAA
Statistics
Matches: 218, Mismatches: 34, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
80 2 0.01
81 215 0.99
82 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
TTTGGTAATTTTACAAACCAGAGGTATTTTAATAATTTTACAAACCAGGGGTATTTTAGTAATTT
TACAAACCAGGGGTAT
Found at i:67374290 original size:27 final size:27
Alignment explanation
Indices: 67373997--67374283 Score: 385
Period size: 27 Copynumber: 10.6 Consensus size: 27
67373987 TACAGGTCGA
* * **
67373997 GGGTATTTTAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
67374024 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
67374051 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
67374078 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
67374105 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
67374132 AGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
67374159 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
67374186 TGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
67374213 AGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
67374240 GGGTACTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
67374267 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
67374284 GGTAAACTAA
Statistics
Matches: 225, Mismatches: 35, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 225 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:67375711 original size:23 final size:23
Alignment explanation
Indices: 67375685--67375729 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
67375675 TGGCACTCTT
67375685 ATGCAAGTAACAATGGCACTTCG
1 ATGCAAGTAACAATGGCACTTCG
* * * *
67375708 ATGCTAGTGATAGTGGCACTTC
1 ATGCAAGTAACAATGGCACTTC
67375730 AGTGCAAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (23 bp):
ATGCAAGTAACAATGGCACTTCG
Found at i:67380047 original size:151 final size:150
Alignment explanation
Indices: 67379773--67380068 Score: 574
Period size: 151 Copynumber: 2.0 Consensus size: 150
67379763 TCCATCACAC
67379773 CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
1 CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
67379838 TAACATGTCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAACAAAACA
66 TAACATGTCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAAC-AAACA
67379903 TATAAATAAGTACTCATATGA
130 TATAAATAAGTACTCATATGA
67379924 CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
1 CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
*
67379989 TAACATGTCCCATGAAGTAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAACAAACAT
66 TAACATGTCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAACAAACAT
67380054 ATAAATAAGTACTCA
131 ATAAATAAGTACTCA
67380069 AATCATATGA
Statistics
Matches: 144, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
150 21 0.15
151 123 0.85
ACGTcount: A:0.38, C:0.27, G:0.10, T:0.25
Consensus pattern (150 bp):
CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
TAACATGTCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAACAAACAT
ATAAATAAGTACTCATATGA
Found at i:67383272 original size:42 final size:47
Alignment explanation
Indices: 67383224--67383345 Score: 130
Period size: 48 Copynumber: 2.7 Consensus size: 47
67383214 GTGTTATCAT
*
67383224 GTAAGACCATTTCTGGGATATGGCATT-G-AT-A-TGA-GATCCCATA
1 GTAAGACCATATCTGGGATATGGCATTGGCATAAGTGATGATCCCA-A
* * * *
67383267 -TAAGACCATGTCTGGAACATGGCATTGGCATCAAGTTATGATCCCAA
1 GTAAGACCATATCTGGGATATGGCATTGGCAT-AAGTGATGATCCCAA
*
67383314 GTAAGACCATATCTGGGATATGGCGTTGGCAT
1 GTAAGACCATATCTGGGATATGGCATTGGCAT
67383346 CTTACTATGT
Statistics
Matches: 64, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
42 23 0.36
43 1 0.02
44 2 0.03
46 1 0.02
47 3 0.05
48 34 0.53
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (47 bp):
GTAAGACCATATCTGGGATATGGCATTGGCATAAGTGATGATCCCAA
Found at i:67389747 original size:22 final size:22
Alignment explanation
Indices: 67389706--67389747 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
67389696 CTAGGGATTC
* * *
67389706 CACACGAGTGTATGTTATTGGA
1 CACACGACTGTATCTGATTGGA
67389728 CACACGACTGTATCTGATTG
1 CACACGACTGTATCTGATTG
67389748 CTACAAGGGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (22 bp):
CACACGACTGTATCTGATTGGA
Found at i:67393261 original size:13 final size:13
Alignment explanation
Indices: 67393243--67393267 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67393233 TAAAATTGGT
67393243 TTCAAATTTGGAG
1 TTCAAATTTGGAG
67393256 TTCAAATTTGGA
1 TTCAAATTTGGA
67393268 AGATATGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (13 bp):
TTCAAATTTGGAG
Found at i:67397341 original size:23 final size:23
Alignment explanation
Indices: 67397311--67397366 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
67397301 GATGAAGTGC
67397311 TGATTTGATTAAATCAGTTGATT
1 TGATTTGATTAAATCAGTTGATT
* *
67397334 TGATTTGATTAAGTCAGTTGTTT
1 TGATTTGATTAAATCAGTTGATT
67397357 TGATTTGATT
1 TGATTTGATT
67397367 TAGACCTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.25, C:0.04, G:0.20, T:0.52
Consensus pattern (23 bp):
TGATTTGATTAAATCAGTTGATT
Found at i:67399192 original size:65 final size:65
Alignment explanation
Indices: 67399123--67399293 Score: 243
Period size: 65 Copynumber: 2.6 Consensus size: 65
67399113 TGGTACAACT
* * * *
67399123 TGAAAAGGTTATATACACTTTGTGTGTACACTTGGAAAGGTTAGGTATACTTTGTGTGTACCATA
1 TGAAAAGGATAGATATACTTTGTGTGTACACTTGGAAAGGTTAAGTATACTTTGTGTGTACCATA
* * *
67399188 TGAAAAGGAAAGATATACTTTGTGTGTACACTTGAAAAGTTTAAGTATACTTTGTGTGTACCATA
1 TGAAAAGGATAGATATACTTTGTGTGTACACTTGGAAAGGTTAAGTATACTTTGTGTGTACCATA
* * *
67399253 TGAAAAGGATAGGTATACTCTGTGTCTACCACTTGGAAAGG
1 TGAAAAGGATAGATATACTTTGTGTGTA-CACTTGGAAAGG
67399294 AATGTACACC
Statistics
Matches: 92, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
65 82 0.89
66 10 0.11
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (65 bp):
TGAAAAGGATAGATATACTTTGTGTGTACACTTGGAAAGGTTAAGTATACTTTGTGTGTACCATA
Found at i:67399294 original size:33 final size:33
Alignment explanation
Indices: 67399115--67399294 Score: 179
Period size: 33 Copynumber: 5.5 Consensus size: 33
67399105 TATCCAAATG
* * ** *
67399115 GTACAACTTGAAAAGGTTATATACACTTTGTGT
1 GTACCACTTGAAAAGGATAGGTATACTTTGTGT
* *
67399148 GTA-CACTTGGAAAGGTTAGGTATACTTTGTGT
1 GTACCACTTGAAAAGGATAGGTATACTTTGTGT
* *
67399180 GTACCA-TATGAAAAGGAAAGATATACTTTGTGT
1 GTACCACT-TGAAAAGGATAGGTATACTTTGTGT
** *
67399213 GTA-CACTTGAAAAGTTTAAGTATACTTTGTGT
1 GTACCACTTGAAAAGGATAGGTATACTTTGTGT
*
67399245 GTACCA-TATGAAAAGGATAGGTATACTCTGTGT
1 GTACCACT-TGAAAAGGATAGGTATACTTTGTGT
* *
67399278 CTACCACTTGGAAAGGA
1 GTACCACTTGAAAAGGA
67399295 ATGTACACCT
Statistics
Matches: 121, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
32 54 0.45
33 66 0.55
34 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (33 bp):
GTACCACTTGAAAAGGATAGGTATACTTTGTGT
Found at i:67402912 original size:25 final size:22
Alignment explanation
Indices: 67402873--67402918 Score: 56
Period size: 25 Copynumber: 2.0 Consensus size: 22
67402863 GTAAATCAAA
*
67402873 AAAATATCTCTAGAAATTTTTT
1 AAAATATCTCTAGAAAATTTTT
67402895 AAAATAATCTCTTCAGAAAATTTT
1 AAAAT-ATCTC-T-AGAAAATTTT
67402919 CTCTCTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 5 0.25
24 1 0.05
25 9 0.45
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.41
Consensus pattern (22 bp):
AAAATATCTCTAGAAAATTTTT
Found at i:67403133 original size:23 final size:22
Alignment explanation
Indices: 67403107--67403161 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
67403097 TTTAATATTA
*
67403107 AATTAATAATATACTATTAAGAT
1 AATTAATAATATAATATTAA-AT
* *
67403130 AATTATTAATTTAATATTAAAT
1 AATTAATAATATAATATTAAAT
*
67403152 TATTAA-AATA
1 AATTAATAATA
67403162 ATATTATTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 3 0.12
22 6 0.23
23 17 0.65
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
AATTAATAATATAATATTAAAT
Found at i:67403137 original size:31 final size:30
Alignment explanation
Indices: 67403099--67403167 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 30
67403089 ATAATCACTT
* *
67403099 TAATATTAAATTAATAATATACTATTAAGA
1 TAATATTAAATTAATAATAAACTATTAAAA
* * *
67403129 TAATTATTAATTTAATATTAAATTATTAAAA
1 TAA-TATTAAATTAATAATAAACTATTAAAA
67403160 TAATATTA
1 TAATATTA
67403168 TTTTTGGAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
30 8 0.24
31 25 0.76
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (30 bp):
TAATATTAAATTAATAATAAACTATTAAAA
Found at i:67403154 original size:19 final size:19
Alignment explanation
Indices: 67403073--67403167 Score: 64
Period size: 19 Copynumber: 4.7 Consensus size: 19
67403063 AACATTTAAT
* *
67403073 TTAATTTAATATAAAGATAA
1 TTAATTTAATATTAA-ATTA
* *
67403093 TCACTTTAATATTAAATTA
1 TTAATTTAATATTAAATTA
* * *
67403112 ATAATATACTATTAAGATAATTA
1 TTAATTTAATATT---A-AATTA
67403135 TTAATTTAATATTAAATTA
1 TTAATTTAATATTAAATTA
**
67403154 TTAAAATAATATTA
1 TTAATTTAATATTA
67403168 TTTTTGGAGT
Statistics
Matches: 57, Mismatches: 14, Indels: 9
0.71 0.17 0.11
Matches are distributed among these distances:
19 28 0.49
20 13 0.23
22 1 0.02
23 15 0.26
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (19 bp):
TTAATTTAATATTAAATTA
Found at i:67403318 original size:18 final size:18
Alignment explanation
Indices: 67403291--67403330 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
67403281 GTCACAGGAC
67403291 TTATACAGAGGTGCATTA
1 TTATACAGAGGTGCATTA
*
67403309 TTATATAGAGGTGCATTA
1 TTATACAGAGGTGCATTA
67403327 TTAT
1 TTAT
67403331 GCACTAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (18 bp):
TTATACAGAGGTGCATTA
Found at i:67403397 original size:25 final size:24
Alignment explanation
Indices: 67403342--67403566 Score: 192
Period size: 25 Copynumber: 9.4 Consensus size: 24
67403332 CACTAATGAA
**
67403342 CAGAGAGCACTGAAGTGCTAT-A-
1 CAGAGAGCACTGGCGTGCTATAAT
67403364 CAGAGAGCACTGGCGTGCTAGTAAT
1 CAGAGAGCACTGGCGTGCTA-TAAT
*
67403389 CAGAGAGCACTGGCGTGCTAAATAT
1 CAGAGAGCACTGGCGTGCTATA-AT
****
67403414 CAGAGAGCACAAATGTGC--TAAT
1 CAGAGAGCACTGGCGTGCTATAAT
*
67403436 CAGAGAGCACTGGCGTGCTAAATAT
1 CAGAGAGCACTGGCGTGCTATA-AT
* *
67403461 CAGAAAGCATTGGCGTGCTAGTAAT
1 CAGAGAGCACTGGCGTGCTA-TAAT
* *
67403486 CAGAGAGCACTGGCATGCTAAATAT
1 CAGAGAGCACTGGCGTGCTATA-AT
****
67403511 CAGAGAGCACAAATGTGC--TAAT
1 CAGAGAGCACTGGCGTGCTATAAT
* *
67403533 CAGAAAGCACTGGCGTGCTAAATAT
1 CAGAGAGCACTGGCGTGCTATA-AT
67403558 CAGAGAGCA
1 CAGAGAGCA
67403567 TGCTGAAGTC
Statistics
Matches: 158, Mismatches: 33, Indels: 21
0.75 0.16 0.10
Matches are distributed among these distances:
22 49 0.31
23 3 0.02
24 5 0.03
25 100 0.63
26 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (24 bp):
CAGAGAGCACTGGCGTGCTATAAT
Found at i:67403433 original size:72 final size:71
Alignment explanation
Indices: 67403342--67403566 Score: 228
Period size: 72 Copynumber: 3.1 Consensus size: 71
67403332 CACTAATGAA
* *
67403342 CAGAGAGCACTGAAGTGCTATA-CAGAGAGCACTGGCGTGCTAGTAATCAGAGAGCACTGGCGTG
1 CAGAGAGCAC-AAAGTGCTATATCAGAGAGCACTGGCGTGCTA-TAATCAGAAAGCACTGGCGTG
67403406 CTAAATAT
64 CTAAATAT
* *
67403414 CAGAGAGCACAAATGTGCTA-ATCAGAGAGCACTGGCGTGCTAAATATCAGAAAGCATTGGCGTG
1 CAGAGAGCACAAA-GTGCTATATCAGAGAGCACTGGCGTGCTATA-ATCAGAAAGCACTGGCGTG
*
67403478 CT-AGTAAT
64 CTAAAT-AT
** ****
67403486 CAGAGAGCAC-TGGCATGCTAAATATCAGAGAGCACAAATGTGC--TAATCAGAAAGCACTGGCG
1 CAGAGAGCACAAAG--TGCT--ATATCAGAGAGCACTGGCGTGCTATAATCAGAAAGCACTGGCG
67403548 TGCTAAATAT
62 TGCTAAATAT
67403558 CAGAGAGCA
1 CAGAGAGCA
67403567 TGCTGAAGTC
Statistics
Matches: 129, Mismatches: 14, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
70 1 0.01
71 6 0.05
72 102 0.79
73 3 0.02
74 1 0.01
75 16 0.12
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (71 bp):
CAGAGAGCACAAAGTGCTATATCAGAGAGCACTGGCGTGCTATAATCAGAAAGCACTGGCGTGCT
AAATAT
Found at i:67403436 original size:47 final size:47
Alignment explanation
Indices: 67403385--67403566 Score: 265
Period size: 47 Copynumber: 3.8 Consensus size: 47
67403375 GGCGTGCTAG
67403385 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
1 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
* *****
67403432 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAAAGCATTGGCGTGC
1 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
*
67403479 TAGTAATCAGAGAGCACTGGCATGCTAAATATCAGAGAGCACAAATGTGC
1 ---TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
*
67403529 TAATCAGAAAGCACTGGCGTGCTAAATATCAGAGAGCA
1 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCA
67403567 TGCTGAAGTC
Statistics
Matches: 117, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
47 77 0.66
50 40 0.34
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (47 bp):
TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
Found at i:67403505 original size:97 final size:97
Alignment explanation
Indices: 67403342--67403567 Score: 377
Period size: 97 Copynumber: 2.4 Consensus size: 97
67403332 CACTAATGAA
** * *
67403342 CAGAGAGCACTGAAGTGCT--ATA-CAGAGAGCACTGGCGTGCTAGTAATCAGAGAGCACTGGCG
1 CAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATTGGCGTGCTAGTAATCAGAGAGCACTGGCA
67403404 TGCTAAATATCAGAGAGCACAAATGTGCTAAT
66 TGCTAAATATCAGAGAGCACAAATGTGCTAAT
*
67403436 CAGAGAGCACTGGCGTGCTAAATATCAGAAAGCATTGGCGTGCTAGTAATCAGAGAGCACTGGCA
1 CAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATTGGCGTGCTAGTAATCAGAGAGCACTGGCA
67403501 TGCTAAATATCAGAGAGCACAAATGTGCTAAT
66 TGCTAAATATCAGAGAGCACAAATGTGCTAAT
*
67403533 CAGAAAGCACTGGCGTGCTAAATATCAGAGAGCAT
1 CAGAGAGCACTGGCGTGCTAAATATCAGAGAGCAT
67403568 GCTGAAGTCC
Statistics
Matches: 122, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
94 17 0.14
96 3 0.02
97 102 0.84
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (97 bp):
CAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATTGGCGTGCTAGTAATCAGAGAGCACTGGCA
TGCTAAATATCAGAGAGCACAAATGTGCTAAT
Found at i:67406664 original size:11 final size:10
Alignment explanation
Indices: 67406648--67406674 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
67406638 CAATTTTTTA
67406648 TTTTTTTATT
1 TTTTTTTATT
67406658 TTTTTTTATT
1 TTTTTTTATT
67406668 TTTTTTT
1 TTTTTTT
67406675 CAGACTATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:67408826 original size:25 final size:25
Alignment explanation
Indices: 67408793--67408925 Score: 166
Period size: 25 Copynumber: 5.4 Consensus size: 25
67408783 AAATGTGCAA
*
67408793 ATCAGAGAGCACTGACGTGCTAAAT
1 ATCAGAGAGCACTGGCGTGCTAAAT
* *
67408818 ATCATAGAGCACTGGCGTGCT-AGT
1 ATCAGAGAGCACTGGCGTGCTAAAT
67408842 AATCAGAGAGCACTGGCGTGCTAAAT
1 -ATCAGAGAGCACTGGCGTGCTAAAT
****
67408868 ATCAGAGAGCACAAATGTGCT--A-
1 ATCAGAGAGCACTGGCGTGCTAAAT
67408890 ATCAGAGAGCACTGGCGTGCTAAAT
1 ATCAGAGAGCACTGGCGTGCTAAAT
67408915 ATCAGAGAGCA
1 ATCAGAGAGCA
67408926 TGCTGAAGTC
Statistics
Matches: 90, Mismatches: 13, Indels: 10
0.80 0.12 0.09
Matches are distributed among these distances:
22 17 0.19
23 1 0.01
24 3 0.03
25 67 0.74
26 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (25 bp):
ATCAGAGAGCACTGGCGTGCTAAAT
Found at i:67408910 original size:47 final size:47
Alignment explanation
Indices: 67408773--67408925 Score: 216
Period size: 47 Copynumber: 3.2 Consensus size: 47
67408763 AAGTGCTTTA
* *
67408773 CAGAGAGCACAAATGTGCAAATCAGAGAGCACTGACGTGCTAAATAT
1 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAAATAT
* ****
67408820 CATAGAGCACTGGCGTGCTAGTAATCAGAGAGCACTGGCGTGCTAAATAT
1 CAGAGAGCACAAATGTGC---TAATCAGAGAGCACTGGCGTGCTAAATAT
67408870 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAAATAT
1 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAAATAT
67408917 CAGAGAGCA
1 CAGAGAGCA
67408926 TGCTGAAGTC
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
47 51 0.56
50 40 0.44
ACGTcount: A:0.36, C:0.20, G:0.26, T:0.18
Consensus pattern (47 bp):
CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAAATAT
Found at i:67411723 original size:21 final size:20
Alignment explanation
Indices: 67411699--67411773 Score: 68
Period size: 21 Copynumber: 3.9 Consensus size: 20
67411689 TAGCCTTCGG
67411699 GCTTCCGTCTAGCACTTGTGT
1 GCTTCCGTCTAGCACTT-TGT
* * *
67411720 GCTTCAGT-TAGC-CTTCGA
1 GCTTCCGTCTAGCACTTTGT
*
67411738 GCTTCTGTCTAGCACTTATGT
1 GCTTCCGTCTAGCACTT-TGT
67411759 GCTTCCG-CTAG-ACTT
1 GCTTCCGTCTAGCACTT
67411774 CTGGCTTTAG
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
18 8 0.18
19 11 0.25
20 11 0.25
21 14 0.32
ACGTcount: A:0.13, C:0.28, G:0.21, T:0.37
Consensus pattern (20 bp):
GCTTCCGTCTAGCACTTTGT
Found at i:67411729 original size:39 final size:39
Alignment explanation
Indices: 67411681--67411763 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
67411671 GCTCTGATGA
* * *
67411681 GCTTTAGTTAGCCTTCGGGCTTCCGTCTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGAGCTTCCGTCTAGCACTTATGT
*
67411720 GCTTCAGTTAGCCTTCGAGCTTCTGTCTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGAGCTTCCGTCTAGCACTTATGT
67411759 GCTTC
1 GCTTC
67411764 CGCTAGACTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.12, C:0.27, G:0.23, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGAGCTTCCGTCTAGCACTTATGT
Found at i:67418226 original size:225 final size:225
Alignment explanation
Indices: 67417719--67418401 Score: 1255
Period size: 225 Copynumber: 3.0 Consensus size: 225
67417709 TAAGGAACAG
67417719 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
1 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
67417784 GCATGTTATTTACCATACATGTGTGGGTGGGT--TTTGGGGGGGGGGGGTGTTTGGAGAGCAATA
66 GCATGTTATTTACCATACATGTGTGGGTGGGTGGTTT--GGGGGGGGGGTGTTTGGAGAGCAATA
67417847 GATTAAGCATGGACAGCTACATGTCAATAGTTCTTCTTTTTTTTTTTTTTTGTACATTCTCATCT
129 GATTAAGCATGGACAGCTACATGTCAATAG---TTCTTTTTTTTTTTTTTTGTACATTCTCATCT
*
67417912 ATGATTGATTATATTGCAATTAGTAGAGTTTTATC
191 ATGATTGATTATATTGCAATTGGTAGAGTTTTATC
67417947 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
1 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
* *
67418012 GCATGTTATTTACCATACATGTGTGGGTGGGTGGGTTTTGGGGGGGGGTGTTTGGAGAGCAACAG
66 GCATGTTATTTACCATACATGTGTGGGTGGGT-GGTTTGGGGGGGGGGTGTTTGGAGAGCAATAG
67418077 ATTAAGCATGGACAGCTACATGTCAATAGTTC-TTTTTTTTTTTTTTGTACATTCTCATCTATGA
130 ATTAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTGTACATTCTCATCTATGA
67418141 TTGATTATATTGCAATTGGTAGAGTTTTATC
195 TTGATTATATTGCAATTGGTAGAGTTTTATC
67418172 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
1 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
*
67418237 GCATGTTATTTACCATACATGTGTGGGTGGGTGGTTGGGGGGGGGGGTGTTTGGAGAGCAATAGA
66 GCATGTTATTTACCATACATGTGTGGGTGGGTGGTTTGGGGGGGGGGTGTTTGGAGAGCAATAGA
67418302 TTAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTGTACATTCTCATCTATGAT
131 TTAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTGTACATTCTCATCTATGAT
67418367 TGATTATATTGCAATTGGTAGAGTTTTATC
196 TGATTATATTGCAATTGGTAGAGTTTTATC
67418397 TTTAT
1 TTTAT
67418402 CCCTTTGCTT
Statistics
Matches: 445, Mismatches: 6, Indels: 11
0.96 0.01 0.02
Matches are distributed among these distances:
224 61 0.14
225 227 0.51
226 3 0.01
228 97 0.22
229 54 0.12
231 3 0.01
ACGTcount: A:0.23, C:0.10, G:0.22, T:0.45
Consensus pattern (225 bp):
TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
GCATGTTATTTACCATACATGTGTGGGTGGGTGGTTTGGGGGGGGGGTGTTTGGAGAGCAATAGA
TTAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTGTACATTCTCATCTATGAT
TGATTATATTGCAATTGGTAGAGTTTTATC
Found at i:67418679 original size:149 final size:149
Alignment explanation
Indices: 67418404--67418702 Score: 562
Period size: 149 Copynumber: 2.0 Consensus size: 149
67418394 ATCTTTATCC
* *
67418404 CTTTGCTTCCACTCGCAGCAATATTTATGTTGGGTATACTTCATATTAAAATTTTTTCTAGGTTG
1 CTTTACTTCCACTCGCAACAATATTTATGTTGGGTATACTTCATATTAAAATTTTTTCTAGGTTG
*
67418469 CTTAGTAAAATTGATAATTTTGTTAACCCAATGATCTACTGATAAGAGCGCTGTCTGTAAAAGAC
66 CTTAGTAAAATTGATAATTTTGTTAACCCAATGATCTACTGATAAGAACGCTGTCTGTAAAAGAC
67418534 ACTTTCATCCAATGAAGAG
131 ACTTTCATCCAATGAAGAG
*
67418553 CTTTACTTCCACTCGCAACAATATTTATGTTGGGTCTACTTCATATTAAAATTTTTTCTAGGTTG
1 CTTTACTTCCACTCGCAACAATATTTATGTTGGGTATACTTCATATTAAAATTTTTTCTAGGTTG
67418618 CTTAGTAAAATTGATAATTTTGTTAACCCAATGATCTACTGATAAGAACGCTGTCTGTAAAAGAC
66 CTTAGTAAAATTGATAATTTTGTTAACCCAATGATCTACTGATAAGAACGCTGTCTGTAAAAGAC
67418683 ACTTTCATCCAATGAAGAG
131 ACTTTCATCCAATGAAGAG
67418702 C
1 C
67418703 CATGACCTTT
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 146 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (149 bp):
CTTTACTTCCACTCGCAACAATATTTATGTTGGGTATACTTCATATTAAAATTTTTTCTAGGTTG
CTTAGTAAAATTGATAATTTTGTTAACCCAATGATCTACTGATAAGAACGCTGTCTGTAAAAGAC
ACTTTCATCCAATGAAGAG
Found at i:67421356 original size:69 final size:69
Alignment explanation
Indices: 67421245--67421383 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
67421235 GATAGGAAAA
*
67421245 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTTGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
67421310 GCTG
66 GCTG
67421314 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
67421379 GCTG
66 GCTG
67421383 A
1 A
67421384 TAGAGTCTTG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (69 bp):
ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
GCTG
Found at i:67432071 original size:3 final size:3
Alignment explanation
Indices: 67432063--67432088 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
67432053 CTCTCGTGTT
67432063 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
67432089 TAATTTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:67433094 original size:7 final size:7
Alignment explanation
Indices: 67433082--67433107 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
67433072 ATAACTCAAA
67433082 AAAATTT
1 AAAATTT
67433089 AAAATTT
1 AAAATTT
67433096 AAAATTT
1 AAAATTT
67433103 AAAAT
1 AAAAT
67433108 ATATAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
AAAATTT
Found at i:67434342 original size:23 final size:23
Alignment explanation
Indices: 67434315--67434370 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
67434305 AAAAAAGAGG
* * * *
67434315 GAAAGAAATGAGAGGAAGGAGAA
1 GAAAGAAAGGAAAAGAAGAAGAA
67434338 GAAAGAAAGGAAAAGAAGAAGAA
1 GAAAGAAAGGAAAAGAAGAAGAA
*
67434361 GAAAGGAAGG
1 GAAAGAAAGG
67434371 TACGTATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.61, C:0.00, G:0.38, T:0.02
Consensus pattern (23 bp):
GAAAGAAAGGAAAAGAAGAAGAA
Found at i:67438795 original size:111 final size:110
Alignment explanation
Indices: 67438642--67439151 Score: 499
Period size: 111 Copynumber: 4.7 Consensus size: 110
67438632 ATAAAAGTGA
* * * *
67438642 TTTTTTTT--AATTATTTTAAAGTTTTTTTGTTAGTGATATATGATTAGGTTATAAATTGTGTGT
1 TTTTTTTTAAAATTATCTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTGTGT
* * *
67438705 GTTGAATTTAGTG-TT-TTGTGAATTT-TTATTAATGTAAATTTTT
66 GTTTAGTTTAGTGTTTATTGTG-ATTTCTTATGAATGTAAATTTTT
* * * * *
67438748 TGTTTTTTTAAAAAATTATTTTATACTTATTTTGTTAGTAATTTATGATTATGTTATAAATTGTT
1 T-TTTTTTT--AAAATTATCTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTG
* *
67438813 TCTGTTTAGTTTAGTG-TT-TTGTGATTTCTTATGAATGTAATTTTTTT
63 TGTGTTTAGTTTAGTGTTTATTGTGATTTCTTATGAATGTAA-ATTTTT
* *
67438860 TTGTATTTTTAAAATTATCTTAAAGTCATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTT
1 TT-T-TTTTTAAAATTATCTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAA----TT
* *
67438925 GTGTGTGTTTTGTTTAATGTTTATTGTGACTTT-TTATGAATGTAAA-----
60 GTGTGTGTTTAGTTTAGTGTTTATTGTGA-TTTCTTATGAATGTAAATTTTT
* * * *
67438971 TTTTTTTT--AATTATCTGAAAGTTATTTTATTAGCAATTTATGATTAGGTTATAAATTGTTTGT
1 TTTTTTTTAAAATTATCTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTGTGT
*
67439034 GTTTAGTTTAGTGTTTATTGTGATTTGTTATGAATGTAAA-----
66 GTTTAGTTTAGTGTTTATTGTGATTTCTTATGAATGTAAATTTTT
* * * * *
67439074 --TTTTTT-AAATTATTTTAAAGTTATTTTATTAGTAATTTATGATTAGCTTATAAATTATTTGT
1 TTTTTTTTAAAATTATCTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTGTGT
67439136 GTTTAGTTTAGTGTTT
66 GTTTAGTTTAGTGTTT
67439152 TAAAATTATT
Statistics
Matches: 350, Mismatches: 36, Indels: 40
0.82 0.08 0.09
Matches are distributed among these distances:
101 6 0.02
102 69 0.20
103 41 0.12
106 1 0.00
107 49 0.14
109 5 0.01
110 5 0.01
111 122 0.35
112 7 0.02
113 5 0.01
115 17 0.05
116 2 0.01
117 18 0.05
118 3 0.01
ACGTcount: A:0.27, C:0.02, G:0.15, T:0.57
Consensus pattern (110 bp):
TTTTTTTTAAAATTATCTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTGTGT
GTTTAGTTTAGTGTTTATTGTGATTTCTTATGAATGTAAATTTTT
Found at i:67439017 original size:107 final size:106
Alignment explanation
Indices: 67438864--67439147 Score: 389
Period size: 107 Copynumber: 2.7 Consensus size: 106
67438854 TTTTTTTTGT
* * *
67438864 ATTTTTAAAATTATCTTAAAGTCATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGT
1 ATTTTTTAAATTATCTTAAAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTGTTTGTGT
*
67438929 GTGTTTTGTTTAATGTTTATTGTGACTTT-TTATGAATGTAA
66 GTGTTTAGTTTAATGTTTATTGTGA-TTTGTTATGAATGTAA
* * * *
67438970 ATTTTTTTTAATTATCTGAAAGTTATTTTATTAGCAATTTATGATTAGGTTATAAATTG--T-T-
1 A-TTTTTTAAATTATCTTAAAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTGTTTGTG
*
67439031 TGTGTTTAGTTTAGTGTTTATTGTGATTTGTTATGAATGTAA
65 TGTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAA
* * *
67439073 ATTTTTTAAATTATTTTAAAGTTATTTTATTAGTAATTTATGATTAGCTTATAAATTATTTGTGT
1 ATTTTTTAAATTATCTTAAAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTGTTTGTGT
*
67439138 TTAGTTTAGT
66 GT-GTTTAGT
67439148 GTTTTAAAAT
Statistics
Matches: 155, Mismatches: 16, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
102 54 0.35
103 37 0.24
104 2 0.01
105 2 0.01
106 3 0.02
107 57 0.37
ACGTcount: A:0.29, C:0.02, G:0.14, T:0.55
Consensus pattern (106 bp):
ATTTTTTAAATTATCTTAAAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTGTTTGTGT
GTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAA
Found at i:67439113 original size:102 final size:102
Alignment explanation
Indices: 67438864--67439151 Score: 407
Period size: 102 Copynumber: 2.8 Consensus size: 102
67438854 TTTTTTTTGT
* * *
67438864 ATTTTTAAAATTATCTTAAAGTCATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGT
1 ATTTTTTAAATTATCTTAAAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTG--T-T-T
* *
67438929 GTGTTTTGTTTAATGTTTATTGTGACTTTTTATGAATGTAA
62 GTGTTTAGTTTAGTGTTTATTGTGACTTTTTATGAATGTAA
* * * *
67438970 ATTTTTTTTAATTATCTGAAAGTTATTTTATTAGCAATTTATGATTAGGTTATAAATTGTTTGTG
1 A-TTTTTTAAATTATCTTAAAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTGTTTGTG
67439035 TTTAGTTTAGTGTTTATTGTGA-TTTGTTATGAATGTAA
65 TTTAGTTTAGTGTTTATTGTGACTTT-TTATGAATGTAA
* * *
67439073 ATTTTTTAAATTATTTTAAAGTTATTTTATTAGTAATTTATGATTAGCTTATAAATTATTTGTGT
1 ATTTTTTAAATTATCTTAAAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTGTTTGTGT
67439138 TTAGTTTAGTGTTT
66 TTAGTTTAGTGTTT
67439152 TAAAATTATT
Statistics
Matches: 165, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
102 75 0.45
103 37 0.22
104 1 0.01
105 1 0.01
106 1 0.01
107 50 0.30
ACGTcount: A:0.28, C:0.02, G:0.15, T:0.55
Consensus pattern (102 bp):
ATTTTTTAAATTATCTTAAAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTGTTTGTGT
TTAGTTTAGTGTTTATTGTGACTTTTTATGAATGTAA
Found at i:67439502 original size:11 final size:12
Alignment explanation
Indices: 67439475--67439504 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
67439465 TTATGAGATA
*
67439475 TTTTTTATTGTG
1 TTTTTTACTGTG
67439487 TTTTTTACTGTG
1 TTTTTTACTGTG
67439499 TTTTTT
1 TTTTTT
67439505 GTTACTTACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.03, G:0.13, T:0.77
Consensus pattern (12 bp):
TTTTTTACTGTG
Found at i:67450365 original size:128 final size:126
Alignment explanation
Indices: 67450084--67450514 Score: 520
Period size: 126 Copynumber: 3.5 Consensus size: 126
67450074 GCCAAACGGT
* * * * * * *
67450084 AAATCGCAACCCAGCACGATTGGGCACGATTTATCGAATTTCCAAATACAAAATATTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCATT
* ** * *
67450149 TTAATTTAAGAAAACATGGATGAAATGTCGAAAGGATATTTCGTATCTTAGTCGAATGAAA
66 TTAATTTAAGAAAACATGGATGAAATTTTAAAAGGATATTCCGTATTTTAGTCGAATGAAA
* *
67450210 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGTCTCGTT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCATT
* * *
67450275 TTAGTTTAAGAAAACGTGGATGAAATTTTAAAAAAGGATATTCCATATTTTAGTCGAATGAAAA
66 TTAATTTAAGAAAACATGGATGAAATTTT--AAAAGGATATTCCGTATTTTAGTCGAATG-AAA
67450339 AAAT-GAAACCCAGCACGATTGGGCACGATCTCTCAAAC-T-C---C-CGAAATATTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCATT
* * * *
67450397 TTAATTTTAAAAAAACATGGACGAAATTTTTAAAGGATATTCCGTATTTTAG-CTGAACG-AA
66 TTAA-TTTAAGAAAACATGGATGAAATTTTAAAAGGATATTCCGTATTTTAGTC-GAATGAAA
* * * * *
67450458 AAATCGAAACCCAGCACAATTGGGCACGACCCCTCGAACTCCCAAACACGAAATATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATT
67450515 TCCTAATATT
Statistics
Matches: 262, Mismatches: 31, Indels: 24
0.83 0.10 0.08
Matches are distributed among these distances:
119 6 0.02
120 31 0.12
121 24 0.09
122 19 0.07
123 23 0.09
125 1 0.00
126 91 0.35
127 1 0.00
128 59 0.23
129 7 0.03
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (126 bp):
AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCATT
TTAATTTAAGAAAACATGGATGAAATTTTAAAAGGATATTCCGTATTTTAGTCGAATGAAA
Found at i:67451208 original size:16 final size:16
Alignment explanation
Indices: 67451161--67451208 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
67451151 TGTATATAAG
*
67451161 AAAATTTAAAATAAAC
1 AAAATTTAAAAAAAAC
*
67451177 -AAATTACAAAATAAAAC
1 AAAATT-TAAAA-AAAAC
67451194 AAAATTTAAAAAAAA
1 AAAATTTAAAAAAAA
67451209 TACACGTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
15 5 0.19
16 8 0.31
17 8 0.31
18 5 0.19
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAATTTAAAAAAAAC
Found at i:67451246 original size:19 final size:18
Alignment explanation
Indices: 67451221--67451264 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
67451211 CACGTAAAAT
*
67451221 ATTAAAATAGA-TAAATAA
1 ATTAAAA-AGAGTAAAGAA
*
67451239 ATTAAAAAGAGTAAAGGA
1 ATTAAAAAGAGTAAAGAA
67451257 ATTAAAAA
1 ATTAAAAA
67451265 AAAAAACTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (18 bp):
ATTAAAAAGAGTAAAGAA
Found at i:67452660 original size:40 final size:40
Alignment explanation
Indices: 67452607--67452746 Score: 104
Period size: 40 Copynumber: 3.4 Consensus size: 40
67452597 TGATCTGCTC
**
67452607 CCCTACTATTTAGGGGAGATCTATATTTTCCAGCCTGTTA
1 CCCTACTGCTTAGGGGAGATCTATATTTTCCAGCCTGTTA
* ** * * * * *
67452647 CCCTACTGCTTAGGGGGTTGAGGCTCCCTGTCTTCGA-TCTGCT-
1 CCCTACTGCTTA--GGG--GA-GATCTATATTTTCCAGCCTGTTA
* *
67452690 CCACTACTGTTTAGGGGAGATCTGTATTTTCCAGCCTGTTA
1 CC-CTACTGCTTAGGGGAGATCTATATTTTCCAGCCTGTTA
67452731 CCCTACTGCTTAGGGG
1 CCCTACTGCTTAGGGG
67452747 GTTAAGGCTC
Statistics
Matches: 72, Mismatches: 20, Indels: 16
0.67 0.19 0.15
Matches are distributed among these distances:
39 9 0.12
40 29 0.40
41 2 0.03
42 6 0.08
43 2 0.03
44 15 0.21
45 9 0.12
ACGTcount: A:0.16, C:0.26, G:0.24, T:0.34
Consensus pattern (40 bp):
CCCTACTGCTTAGGGGAGATCTATATTTTCCAGCCTGTTA
Found at i:67452833 original size:83 final size:84
Alignment explanation
Indices: 67452539--67452839 Score: 379
Period size: 84 Copynumber: 3.6 Consensus size: 84
67452529 CTTTGGGATA
* * * * * * ** * *
67452539 AGATCTGTATTTTTCAGCTTGTTACACTACTGCTTAGGGGATTACGGTTTGCTGTCTTTGATCTG
1 AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTATCTTCGATCTG
* *
67452604 CTCCCCTACTATTTAGGGG
66 CTCCACTACTGTTTAGGGG
* * * *
67452623 AGATCTATATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTGAGGCTCCCTGTCTTCGATCTG
1 AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTATCTTCGATCTG
67452688 CTCCACTACTGTTTAGGGG
66 CTCCACTACTGTTTAGGGG
*
67452707 AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTATTTTCGATCTG
1 AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTATCTTCGATCTG
*
67452772 CTCCACTATTGTTTA-GGG
66 CTCCACTACTGTTTAGGGG
* * * * * *
67452790 AGATCTGTATTTTCTAGCCTGTCACCTTATTGCTTTGGGGGTTAAAGCTC
1 AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTC
67452840 GCTGTCTTGA
Statistics
Matches: 192, Mismatches: 25, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
83 47 0.24
84 145 0.76
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (84 bp):
AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTATCTTCGATCTG
CTCCACTACTGTTTAGGGG
Found at i:67464434 original size:128 final size:126
Alignment explanation
Indices: 67464153--67464562 Score: 511
Period size: 128 Copynumber: 3.2 Consensus size: 126
67464143 GCCAAACGGT
* * * * *
67464153 AAATCGCAACCCAGCACGATTGGGCACGATTTATCGAATTTCCAAATAC-AAAATATTGTCTCAT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAAA-ATTGTCTCAT
* * * *
67464217 TTTAATTTAAGAAAACATGGATGAAATGTCGAAAGGATATTTCGTATCTTAGTCGAATGAAA
65 TTTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAAA
* * *
67464279 AAATCGAAACCCATCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAAAATTGTCTCGTT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAAAATTGTCTCATT
** * *
67464344 TTAGCTTAAGAAAACGTGGATGAAATTTCAAAAAAGGATATTCCATATTTTAGTCGAATGAAA
66 TTAATTTAAGAAAACATGGATGAAATTTC--AAAAGGATATTCCGTATTTTAGTCGAATGAAA
* * * * *
67464407 AAAACGAAACCCAGCATGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCAT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACT-TCCAAATACGAAAAATTGTCTCAT
* * * *
67464472 TTTAATTTTAAAAAAACATGGACGAAATTTCTAAAGGATATTCCGTATTTTAG-CTGAACG-AA
65 TTTAA-TTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCCGTATTTTAGTC-GAATGAAA
*
67464534 AAATCGAAACCCAGCACAATTGGGCACGA
1 AAATCGAAACCCAGCACGATTGGGCACGA
67464563 CCCCTCGAAC
Statistics
Matches: 243, Mismatches: 35, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
126 77 0.32
127 33 0.14
128 89 0.37
129 23 0.09
130 21 0.09
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (126 bp):
AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAAAATTGTCTCATT
TTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAAA
Found at i:67469996 original size:20 final size:20
Alignment explanation
Indices: 67469952--67469998 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
67469942 TATTGGTTAT
**
67469952 ATTTTA-ATATTTAAAATTT
1 ATTTTATATATTTAAAATAA
*
67469971 AGTTTATATATTTAAAATAA
1 ATTTTATATATTTAAAATAA
67469991 ATTTTATA
1 ATTTTATA
67469999 AATAATTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
ATTTTATATATTTAAAATAA
Found at i:67471677 original size:3 final size:3
Alignment explanation
Indices: 67471669--67471699 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
67471659 TCATTATTTT
67471669 ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
67471700 CAAAATTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:67475846 original size:47 final size:48
Alignment explanation
Indices: 67475765--67475855 Score: 139
Period size: 47 Copynumber: 1.9 Consensus size: 48
67475755 CCAATGCTTT
*
67475765 TTTCTATAAACCTCCCCCATGCATCTAGGAGCAGGGCCACTTTACCAC
1 TTTCTATAAACCTCCCCCATGCATCGAGGAGCAGGGCCACTTTACCAC
* * *
67475813 TTTCTATAAGCCTCTCCTATG-ATCGAGGAGCAGGGCCACTTTA
1 TTTCTATAAACCTCCCCCATGCATCGAGGAGCAGGGCCACTTTA
67475856 TCACCTCCTG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 21 0.54
48 18 0.46
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (48 bp):
TTTCTATAAACCTCCCCCATGCATCGAGGAGCAGGGCCACTTTACCAC
Found at i:67475932 original size:49 final size:49
Alignment explanation
Indices: 67475791--67475933 Score: 134
Period size: 49 Copynumber: 3.0 Consensus size: 49
67475781 CCATGCATCT
* * * *
67475791 AGGAGCAGGGCCACTTTACCACTTTCTATAAGCCT-CTCCTATG-ATCG
1 AGGAGCAGGGCCACTTTACCACCTTCTGTAGGCCTCCTCCTATGTGTCG
* * *
67475838 AGGAGCAGGGCCACTTTATCACCTCCTGTAAGTCTCTCC-CC-ATGTGTCTG
1 AGGAGCAGGGCCACTTTACCACCTTCTGT-AGGC-CTCCTCCTATGTGTC-G
* * *
67475888 A-GAGCAAGGCCATTTTAGCACCTTCTGTAGGCCTCCTCCTATGTGT
1 AGGAGCAGGGCCACTTTACCACCTTCTGTAGGCCTCCTCCTATGTGT
67475934 TTGGAAGTAG
Statistics
Matches: 77, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
47 29 0.38
48 10 0.13
49 35 0.45
50 3 0.04
ACGTcount: A:0.20, C:0.30, G:0.21, T:0.29
Consensus pattern (49 bp):
AGGAGCAGGGCCACTTTACCACCTTCTGTAGGCCTCCTCCTATGTGTCG
Found at i:67476218 original size:33 final size:33
Alignment explanation
Indices: 67476166--67476231 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
67476156 AAAAGCTATA
**
67476166 TTCAAACAGTAAGTGTACTTGTTTGCAAACATG
1 TTCAAACAGTAAGCATACTTGTTTGCAAACATG
* *
67476199 TTCAAACATTAAGCATACTTGTTTGCGAACATG
1 TTCAAACAGTAAGCATACTTGTTTGCAAACATG
67476232 ATTGAACATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (33 bp):
TTCAAACAGTAAGCATACTTGTTTGCAAACATG
Found at i:67478848 original size:23 final size:24
Alignment explanation
Indices: 67478822--67478879 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
67478812 TTATTTCCTA
67478822 TAATATAATATCT-TAA-TTTTAAT
1 TAATATAATAT-TATAAGTTTTAAT
67478845 TAATATAAT-TTATAATGTTTTAAT
1 TAATATAATATTATAA-GTTTTAAT
67478869 TAA-ATAATATT
1 TAATATAATATT
67478880 TTTATAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
21 1 0.03
22 4 0.13
23 14 0.45
24 12 0.39
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
TAATATAATATTATAAGTTTTAAT
Found at i:67483413 original size:36 final size:36
Alignment explanation
Indices: 67483346--67483416 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
67483336 AATATACACA
* * *
67483346 ATATAATATTAGAAGTATATACATAGCATTAAAAAT
1 ATATAATATTAGAAATATATAAATAACATTAAAAAT
*
67483382 ATATACATATTAGAAATA-ATAAATAATATTAAAAA
1 ATATA-ATATTAGAAATATATAAATAACATTAAAAA
67483417 CAACTATTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 19 0.63
37 11 0.37
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (36 bp):
ATATAATATTAGAAATATATAAATAACATTAAAAAT
Found at i:67483614 original size:3 final size:3
Alignment explanation
Indices: 67483545--67483596 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
67483535 CATATAAGTG
* * *
67483545 TAA TAA TAG TAT TAA -AA TTAA TAA TAA TAA TAA TGA TAA TAA T-A
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA
67483589 TAA TAA TA
1 TAA TAA TA
67483597 GTAGCTATAG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
2 4 0.10
3 35 0.85
4 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:67485241 original size:44 final size:45
Alignment explanation
Indices: 67485155--67485243 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 45
67485145 TTCTTCTCTT
*
67485155 CTGCAACTTCAGAAAGGCAAGATCTGATATCCTCGATCAGCTCCA
1 CTGCAACTTCAGAAAGACAAGATCTGATATCCTCGATCAGCTCCA
** * * * *
67485200 CTGCAACTTCAGGGAGACAA-ATCTGGTGTCTTCGATTAGCTCCA
1 CTGCAACTTCAGAAAGACAAGATCTGATATCCTCGATCAGCTCCA
67485244 ATCTTTATTC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
44 20 0.54
45 17 0.46
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (45 bp):
CTGCAACTTCAGAAAGACAAGATCTGATATCCTCGATCAGCTCCA
Found at i:67485456 original size:88 final size:87
Alignment explanation
Indices: 67485278--67485667 Score: 439
Period size: 88 Copynumber: 4.4 Consensus size: 87
67485268 GACTCTGGGT
*** * * * *
67485278 TCAACTCACCTCTCGTGCTATGAATTGACTTTTTGAAAAAAAGACATTAAAAAAACCAG-AATGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-AAAACAGAAATT-GAAAAA-CAGAAAT-T
* **
67485342 GAAAATAACTTGGCATGTGACCCGAGGC
61 GAAAATACCTCAGCATGTGA-CCGAGGC
* *
67485370 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGAAAAACAG-ATTGTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAGAAAT-TGAAA
67485434 ATACCTCAGCATGTGACTCGAGGC
65 ATACCTCAGCATGTGAC-CGAGGC
* * * *
67485458 TCAAGTCACCTCTCGCAATATGAGCTGATTTTTTTG-AAACATAAATTGAAGAACAGAAATT-AA
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAAAACAGAAATTGAA
*
67485521 AATTACCTCAGCGTGTGAGCCGAGGC
64 AA-TACCTCAGCATGTGA-CCGAGGC
*
67485547 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACGAACAGAAATTGAAAAACAGAAATTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAAAACAGAAATTGAAA
*
67485611 ATACCTCAGCATTTGAACCGAGGC
65 ATACCTCAGCATGTG-ACCGAGGC
*
67485635 TGAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
67485668 TTGATGAACA
Statistics
Matches: 260, Mismatches: 27, Indels: 25
0.83 0.09 0.08
Matches are distributed among these distances:
86 5 0.02
87 1 0.00
88 128 0.49
89 78 0.30
90 18 0.07
91 6 0.02
92 24 0.09
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (87 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAGAAATTGAAAA
TACCTCAGCATGTGACCGAGGC
Found at i:67485600 original size:14 final size:14
Alignment explanation
Indices: 67485583--67485611 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
67485573 GATTTTGACG
67485583 AACAGAAATTGAAA
1 AACAGAAATTGAAA
67485597 AACAGAAATTGAAA
1 AACAGAAATTGAAA
67485611 A
1 A
67485612 TACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:67492946 original size:22 final size:22
Alignment explanation
Indices: 67492897--67492963 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
67492887 AATGGATGAA
*
67492897 TGAATAAATGACAAATAAATGA
1 TGAATAAATGACAAATAAATGT
**
67492919 CAAATAAATGACAAATAAATGT
1 TGAATAAATGACAAATAAATGT
* *
67492941 TGAATAAATGACGAATGAATGT
1 TGAATAAATGACAAATAAATGT
67492963 T
1 T
67492964 AGTCATGAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.54, C:0.06, G:0.15, T:0.25
Consensus pattern (22 bp):
TGAATAAATGACAAATAAATGT
Found at i:67492956 original size:11 final size:11
Alignment explanation
Indices: 67492899--67492939 Score: 82
Period size: 11 Copynumber: 3.7 Consensus size: 11
67492889 TGGATGAATG
67492899 AATAAATGACA
1 AATAAATGACA
67492910 AATAAATGACA
1 AATAAATGACA
67492921 AATAAATGACA
1 AATAAATGACA
67492932 AATAAATG
1 AATAAATG
67492940 TTGAATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.63, C:0.07, G:0.10, T:0.20
Consensus pattern (11 bp):
AATAAATGACA
Found at i:67496756 original size:11 final size:11
Alignment explanation
Indices: 67496744--67496784 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
67496734 ATATTAGAAG
*
67496744 TATATACATAG
1 TATATACATAA
*
67496755 TAT-TA-AAAA
1 TATATACATAA
67496764 TATATACATAA
1 TATATACATAA
67496775 TATATACATA
1 TATATACATA
67496785 TTAGAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 5 0.20
10 4 0.16
11 16 0.64
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (11 bp):
TATATACATAA
Found at i:67496756 original size:45 final size:47
Alignment explanation
Indices: 67496707--67496810 Score: 133
Period size: 47 Copynumber: 2.3 Consensus size: 47
67496697 CATATAATGC
* * *
67496707 TAGTATTAAAAAAATATACA-CA-ATATA-ATATTAGAAGTATATACA
1 TAGTATTAAAAAAATATACATAATATATACATATTAGAAATA-ATAAA
*
67496752 TAGTATTAAAAATATATACATAATATATACATATTAGAAATAATAAA
1 TAGTATTAAAAAAATATACATAATATATACATATTAGAAATAATAAA
*
67496799 TAATATTAAAAA
1 TAGTATTAAAAA
67496811 CAACTATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
45 19 0.37
46 1 0.02
47 20 0.39
48 11 0.22
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (47 bp):
TAGTATTAAAAAAATATACATAATATATACATATTAGAAATAATAAA
Found at i:67499704 original size:41 final size:41
Alignment explanation
Indices: 67499634--67499894 Score: 398
Period size: 41 Copynumber: 6.4 Consensus size: 41
67499624 CGTTCTAGAA
* * *
67499634 AAAACGCCGCT-AAAACCAGAGCATTAGCGGCACTTTTCCT
1 AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
* * * *
67499674 AAAACGCCGCAAAAAATCAGAGCATTAGCGGCGCTTTTCCT
1 AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
* *
67499715 AAAACGCCGCAAAAAACCAGAGCATTAGCGGCGCTTTTCGT
1 AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
*
67499756 AAAACGCCGCTAAACACCAGAGCATCAGCGGCGCTTTTCGT
1 AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
*
67499797 AAAACGCCGCTAAATACCAGAGCATCAGCGGCGCTTTTCGT
1 AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
* *
67499838 AAAACACCGCTAAACACCAGAGCATCAGCGGCGCTTTTCGT
1 AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
67499879 AAAACGCCGCTAAAAA
1 AAAACGCCGCTAAAAA
67499895 TCTCATAACC
Statistics
Matches: 207, Mismatches: 13, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
40 10 0.05
41 197 0.95
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.18
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
Found at i:67500073 original size:14 final size:14
Alignment explanation
Indices: 67500051--67500090 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
67500041 TTAATTATCA
* *
67500051 TTATAGTTTAAGGT
1 TTATGGTTTAAGAT
67500065 TTATGGTTTAAGAT
1 TTATGGTTTAAGAT
*
67500079 ATATGGTTTAAG
1 TTATGGTTTAAG
67500091 CATGTTTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAAGAT
Found at i:67501045 original size:24 final size:24
Alignment explanation
Indices: 67500995--67501045 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
67500985 TATATGAGAT
* * *
67500995 AAATATATATAAAATATTATTTTA
1 AAATATATATAAAATATCATATGA
67501019 AAATATATAT-AAATATACATATGA
1 AAATATATATAAAATAT-CATATGA
67501043 AAA
1 AAA
67501046 GTGGTTAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (24 bp):
AAATATATATAAAATATCATATGA
Found at i:67502615 original size:61 final size:62
Alignment explanation
Indices: 67502502--67502621 Score: 233
Period size: 62 Copynumber: 2.0 Consensus size: 62
67502492 CCAAAATTTG
67502502 ATTTCTTTTTTGTCAGTTTTATGTCTGTTGTTTGGATATTTTTGTTCTGAAATGGAAAATTC
1 ATTTCTTTTTTGTCAGTTTTATGTCTGTTGTTTGGATATTTTTGTTCTGAAATGGAAAATTC
67502564 ATTTCTTTTTTGTCAGTTTTATGTCTGTTGTTTGGAT-TTTTTGTTCTGAAATGGAAAA
1 ATTTCTTTTTTGTCAGTTTTATGTCTGTTGTTTGGATATTTTTGTTCTGAAATGGAAAA
67502622 ACTAGTTTGT
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
61 21 0.36
62 37 0.64
ACGTcount: A:0.19, C:0.07, G:0.18, T:0.55
Consensus pattern (62 bp):
ATTTCTTTTTTGTCAGTTTTATGTCTGTTGTTTGGATATTTTTGTTCTGAAATGGAAAATTC
Found at i:67503333 original size:15 final size:15
Alignment explanation
Indices: 67503313--67503344 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
67503303 AAACATATAA
67503313 TCCAAATATTCACTG
1 TCCAAATATTCACTG
67503328 TCCAAATATTCACTG
1 TCCAAATATTCACTG
67503343 TC
1 TC
67503345 AAAACATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (15 bp):
TCCAAATATTCACTG
Found at i:67505019 original size:290 final size:290
Alignment explanation
Indices: 67504499--67505503 Score: 1980
Period size: 290 Copynumber: 3.5 Consensus size: 290
67504489 CCAACCTTAT
67504499 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
67504564 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
67504629 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACATTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACATTAATTTATT
67504694 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATT
196 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATT
67504759 TTTTTATATTAATAATGTTTGATTTTAATA
261 TTTTTATATTAATAATGTTTGATTTTAATA
67504789 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
67504854 GTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
67504919 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACATTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACATTAATTTATT
67504984 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTA--
196 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATT
67505047 TTTTTATATTAATAATGTTTGATTTTAATA
261 TTTTTATATTAATAATGTTTGATTTTAATA
67505077 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
67505142 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
67505207 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACATTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACATTAATTTATT
67505272 TCCAATTTACTTAT-AAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATT
196 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATT
67505336 TTTTTATATTAATAATGTTTGATTTTAATA
261 TTTTTATATTAATAATGTTTGATTTTAATA
67505366 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
67505431 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
67505496 AAAGACTT
131 AAAGACTT
67505504 TTTATCACAA
Statistics
Matches: 711, Mismatches: 2, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
287 48 0.07
288 238 0.33
289 168 0.24
290 257 0.36
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.38
Consensus pattern (290 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACATTAATTTATT
TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATT
TTTTTATATTAATAATGTTTGATTTTAATA
Found at i:67505752 original size:15 final size:15
Alignment explanation
Indices: 67505708--67505763 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
67505698 AACGACATGT
*
67505708 ATATTACTTAATTAAA
1 ATATTATTTAATT-AA
67505724 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
67505737 ATATTATTTAATTAA
1 ATATTATTTAATTAA
67505752 ATATTATTTAAT
1 ATATTATTTAAT
67505764 CCCGCTACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 2 0.06
15 16 0.46
16 4 0.11
17 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:67505908 original size:9 final size:9
Alignment explanation
Indices: 67505869--67506004 Score: 157
Period size: 9 Copynumber: 15.2 Consensus size: 9
67505859 ATTTGATATC
*
67505869 ATAATTTAT
1 ATAACTTAT
*
67505878 ATAACTTAC
1 ATAACTTAT
* * *
67505887 AAAACGTAC
1 ATAACTTAT
67505896 ATAACTTAT
1 ATAACTTAT
*
67505905 ATAACTTAG
1 ATAACTTAT
*
67505914 ATAA-ATAT
1 ATAACTTAT
67505922 ATAACTTAT
1 ATAACTTAT
*
67505931 ATAACTTAC
1 ATAACTTAT
67505940 ATAACTTAT
1 ATAACTTAT
* *
67505949 ATAACATAC
1 ATAACTTAT
*
67505958 ATAACTTAC
1 ATAACTTAT
67505967 ATAACTTAT
1 ATAACTTAT
*
67505976 ATAACTTAC
1 ATAACTTAT
67505985 ATAACTTAT
1 ATAACTTAT
67505994 ATAACTTAT
1 ATAACTTAT
67506003 AT
1 AT
67506005 GTTGTCAACT
Statistics
Matches: 107, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
8 6 0.06
9 101 0.94
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (9 bp):
ATAACTTAT
Found at i:67511898 original size:43 final size:43
Alignment explanation
Indices: 67511849--67511943 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 43
67511839 ATCTGCCAAA
67511849 TTTAGCGGCG-TTTGT-AAAAAAAGCGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTT-TCAAAAAAA-CGCCGCTAAAAGCCTTGACC
** *
67511892 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTTCAAAAAAACGCCGCTAAAAGCCTTGACC
67511935 TTTAGCGGC
1 TTTAGCGGC
67511944 ATTTTTTTCC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
43 40 0.85
44 7 0.15
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (43 bp):
TTTAGCGGCGCTTTTCAAAAAAACGCCGCTAAAAGCCTTGACC
Found at i:67512240 original size:48 final size:47
Alignment explanation
Indices: 67512148--67512240 Score: 107
Period size: 48 Copynumber: 1.9 Consensus size: 47
67512138 CTAATAAGAG
* * * * *
67512148 TGTAGTAAGGTTGAAATACCTTATTCTAATCAATACATATAGAAGAAT
1 TGTAATAAGGTTGAAAAACCATATTCTAA-CAATAAATAAAGAAGAAT
67512196 TGTAATAAGGTTGAAAAACCATATTCTAA-AATAAAATAAAAGAAG
1 TGTAATAAGGTTGAAAAACCATATTCTAACAAT-AAAT-AAAGAAG
67512241 TGTAGTTCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
46 3 0.08
47 3 0.08
48 32 0.84
ACGTcount: A:0.48, C:0.09, G:0.14, T:0.29
Consensus pattern (47 bp):
TGTAATAAGGTTGAAAAACCATATTCTAACAATAAATAAAGAAGAAT
Found at i:67512460 original size:21 final size:20
Alignment explanation
Indices: 67512436--67512475 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
67512426 TAGCATATAA
67512436 TTAGATATTTAATTTATACAG
1 TTAG-TATTTAATTTATACAG
**
67512457 TTAGTATTTTTTTTATACA
1 TTAGTATTTAATTTATACA
67512476 TAAATTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (20 bp):
TTAGTATTTAATTTATACAG
Found at i:67513635 original size:29 final size:28
Alignment explanation
Indices: 67513602--67513658 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
67513592 AATTTTCAAA
67513602 AAAAAAAAATTATTTTTCTAAAATATTAT
1 AAAAAAAAATTATTTTTCTAAAAT-TTAT
* * * *
67513631 AAAAACAGATTTTTTTTTTAAAATTTAT
1 AAAAAAAAATTATTTTTCTAAAATTTAT
67513659 GATAATAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 4 0.17
29 20 0.83
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.46
Consensus pattern (28 bp):
AAAAAAAAATTATTTTTCTAAAATTTAT
Found at i:67514726 original size:22 final size:23
Alignment explanation
Indices: 67514701--67514773 Score: 75
Period size: 22 Copynumber: 3.4 Consensus size: 23
67514691 TATAGAGCTT
*
67514701 AAAAAATTTA-TTTATAATGTAA
1 AAAAAATTAACTTTATAATGTAA
*
67514723 AAAATATTAACTTT-T--TGTAA
1 AAAAAATTAACTTTATAATGTAA
* *
67514743 AAAAAATAAACTCTATAA-GTAA
1 AAAAAATTAACTTTATAATGTAA
67514765 AAAAAATTA
1 AAAAAATTA
67514774 TAAAATATAG
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
20 16 0.39
21 1 0.02
22 21 0.51
23 3 0.07
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (23 bp):
AAAAAATTAACTTTATAATGTAA
Found at i:67523666 original size:275 final size:272
Alignment explanation
Indices: 67523164--67523681 Score: 838
Period size: 275 Copynumber: 1.9 Consensus size: 272
67523154 AATGAGCTAC
* * * *
67523164 TTACAGCATCACGTCTACCTAAAGAAGGAACACAACATACTTTTGATAATGTTGACCTTGCCAAG
1 TTACAGAATCACGCCTACCTAAAGAAGCAACACAACATACTTTTGATAATGTTGACATTGCCAAG
* * * *
67523229 CATGATGCGGGTGAGTTCCATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCCTT
66 CATGATGCAGGTAAGTTCAATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCATT
**
67523294 CTACAATGGTGAAGATGGTGAGTTATCAAAGCTTGAAGAAAACTCATCATGGTTCTCCGGATATG
131 CTACAATGGTGAAGATCATGAGTTATCAAAGCTTGAAGAAAACTCATCATGGTTCTCCGGATATG
67523359 ATCGTTGCAATATTTAGATCACACTTAACTGCAGAATCATGTATGTATTATTAGTAACAGTTTCT
196 ATCGTTGCAATATTTAGATCACACTTAACTGCAGAATCATGTATGTATTATTAGTAACAGTTTCT
67523424 CTCACGTTTAAT
261 CTCACGTTTAAT
* * **
67523436 TTACAGAATCATGCCTACCTAAAGAAGCAATACAACATACTTTTGATAATGTTGACATTGCTGAG
1 TTACAGAATCACGCCTACCTAAAGAAGCAACACAACATACTTTTGATAATGTTGACATTGCCAAG
67523501 CATGATGCAGGTAAGTTCAATGATGCCAATGATACTGATCAGCAATGGCGACAAGTATTTGAACC
66 CATGATGCAGGTAAGTTCAATGATGCCAAT--T-CTGATCAGCAATGGCGACAAGTATTTGAACC
** *
67523566 ATTCTGTAATGGTGAAGATCATGAGTTATCAAAGCTTGAAGAAAACTCGTCATGGTTCTCCGGAT
128 ATTCTACAATGGTGAAGATCATGAGTTATCAAAGCTTGAAGAAAACTCATCATGGTTCTCCGGAT
**
67523631 ATGATCGTTGCAATATTTAGATCACGTTTAACTGCAGAATCATGTATGTAT
193 ATGATCGTTGCAATATTTAGATCACACTTAACTGCAGAATCATGTATGTAT
67523682 ACTAACAATT
Statistics
Matches: 224, Mismatches: 19, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
272 84 0.38
274 1 0.00
275 139 0.62
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30
Consensus pattern (272 bp):
TTACAGAATCACGCCTACCTAAAGAAGCAACACAACATACTTTTGATAATGTTGACATTGCCAAG
CATGATGCAGGTAAGTTCAATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCATT
CTACAATGGTGAAGATCATGAGTTATCAAAGCTTGAAGAAAACTCATCATGGTTCTCCGGATATG
ATCGTTGCAATATTTAGATCACACTTAACTGCAGAATCATGTATGTATTATTAGTAACAGTTTCT
CTCACGTTTAAT
Found at i:67529245 original size:179 final size:179
Alignment explanation
Indices: 67528934--67529268 Score: 474
Period size: 179 Copynumber: 1.9 Consensus size: 179
67528924 TAACAATATA
* * *
67528934 TAATATTCAATCACCAAAATCAACCTAAATGACTTGCACAAAACTTCCAAAAGAACATCCACACG
1 TAATATTCAATCACCAAAATCAACCCAAAAGACTTGCACAAAACTTCCAAAAGAACATCCACACA
* * ** * *
67528999 CTTACCTCTTACGAACAGCCACCACATGAGTTCTACGTCGTTAGAGGCTTACCAATCGCATCTTG
66 CTTACCTCTTACGAACAACCACCACATGAGTTCTACGTCGCTAGAGGCGCACCAACCGCAGCTTG
*
67529064 GACCTCTCCTAAGCATAACGAACCAACTCACCAAATTAGTAACAATCCG
131 GACCTCTCCTAAGCATAACAAACCAACTCACCAAATTAGTAACAATCCG
* * *
67529113 TAATATTCAATCACCAAAATCAACCCAAAAGACTTGCACAACACTTCCAAAAGAACATCCATATA
1 TAATATTCAATCACCAAAATCAACCCAAAAGACTTGCACAAAACTTCCAAAAGAACATCCACACA
* * * * **
67529178 CTTACCTCTTGCGAACAACCACCACACT-AGTTCTACGTCGCTGGAGGCGCACTAGCCGTGGCTT
66 CTTACCTCTTACGAACAACCACCACA-TGAGTTCTACGTCGCTAGAGGCGCACCAACCGCAGCTT
*
67529242 GGACCTCTCCTAAGCATAGCAAACCAA
130 GGACCTCTCCTAAGCATAACAAACCAA
67529269 TTAGATAGCA
Statistics
Matches: 135, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
179 134 0.99
180 1 0.01
ACGTcount: A:0.36, C:0.31, G:0.12, T:0.21
Consensus pattern (179 bp):
TAATATTCAATCACCAAAATCAACCCAAAAGACTTGCACAAAACTTCCAAAAGAACATCCACACA
CTTACCTCTTACGAACAACCACCACATGAGTTCTACGTCGCTAGAGGCGCACCAACCGCAGCTTG
GACCTCTCCTAAGCATAACAAACCAACTCACCAAATTAGTAACAATCCG
Found at i:67534367 original size:49 final size:47
Alignment explanation
Indices: 67534053--67534647 Score: 985
Period size: 47 Copynumber: 12.6 Consensus size: 47
67534043 CCCTTCGGGA
* * * * * *
67534053 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67534100 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67534147 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67534194 CTTATCACATATATACACTTT-ACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67534240 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67534287 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67534334 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67534383 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67534430 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67534479 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67534528 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67534575 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67534622 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
67534648 CACAATTATC
Statistics
Matches: 519, Mismatches: 24, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 44 0.08
47 335 0.65
49 140 0.27
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67534400 original size:96 final size:96
Alignment explanation
Indices: 67534053--67534647 Score: 978
Period size: 96 Copynumber: 6.3 Consensus size: 96
67534043 CCCTTCGGGA
* * * * * *
67534053 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67534116 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
67534147 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67534210 ACTTT-ACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
67534240 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67534303 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
67534334 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67534399 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
67534430 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
67534495 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
67534528 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67534591 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
67534622 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
67534648 CACAATTATC
Statistics
Matches: 478, Mismatches: 14, Indels: 18
0.94 0.03 0.04
Matches are distributed among these distances:
93 94 0.20
94 141 0.29
96 198 0.41
98 45 0.09
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67544934 original size:37 final size:37
Alignment explanation
Indices: 67544884--67544962 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
67544874 TTATTACGAA
* *
67544884 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCAG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCAG
* *
67544921 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCAG
67544958 GTCTT
1 GTCTT
67544963 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCAG
Found at i:67545223 original size:47 final size:47
Alignment explanation
Indices: 67545081--67545225 Score: 200
Period size: 47 Copynumber: 3.1 Consensus size: 47
67545071 CCCTTCGGGA
* * * * * * *
67545081 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
67545128 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67545175 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67545222 CTTA
1 CTTA
67545226 CTATCATTTC
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 85 1.00
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.