Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 204 of 343
Found at i:67548170 original size:20 final size:19
Alignment explanation
Indices: 67548145--67548186 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
67548135 AAAAAGAATT
67548145 GAAGAAAAGAAAGAAACAGA
1 GAAGAAAAGAAAGAAA-AGA
*
67548165 GAAGAAAATAAAGAAAAGA
1 GAAGAAAAGAAAGAAAAGA
67548184 GAA
1 GAA
67548187 ATACCATGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.71, C:0.02, G:0.24, T:0.02
Consensus pattern (19 bp):
GAAGAAAAGAAAGAAAAGA
Found at i:67548260 original size:8 final size:8
Alignment explanation
Indices: 67548247--67548283 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
67548237 TATATTTTTT
67548247 TAAAAAAA
1 TAAAAAAA
67548255 TAAAAAAA
1 TAAAAAAA
67548263 TAAAAAAA
1 TAAAAAAA
67548271 -AATAAAAA
1 TAA-AAAAA
67548279 TAAAA
1 TAAAA
67548284 GAATCTCGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 2 0.07
8 23 0.85
9 2 0.07
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (8 bp):
TAAAAAAA
Found at i:67548574 original size:56 final size:53
Alignment explanation
Indices: 67548504--67548613 Score: 175
Period size: 56 Copynumber: 2.0 Consensus size: 53
67548494 GGGGCATTAC
* *
67548504 AGGTTAGCTATAAGGAATATCAACAAGTAAGCTTTTTAAGTAAGATTTACTTTTTA
1 AGGTTAGCTATAAGGAATATCAAAAAGTAAGC---TTAAGTAAGATTCACTTTTTA
67548560 AGGTTAGCTATAAGGAATATCAAAAAGTAAGCTTAAGTAAGATTCACTTTTTA
1 AGGTTAGCTATAAGGAATATCAAAAAGTAAGCTTAAGTAAGATTCACTTTTTA
67548613 A
1 A
67548614 ACTAACTTTT
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
53 21 0.40
56 31 0.60
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (53 bp):
AGGTTAGCTATAAGGAATATCAAAAAGTAAGCTTAAGTAAGATTCACTTTTTA
Found at i:67548931 original size:3 final size:3
Alignment explanation
Indices: 67548923--67548955 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
67548913 ACAATAGTAG
67548923 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
67548956 AAGAGAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:67555368 original size:30 final size:30
Alignment explanation
Indices: 67555334--67555401 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 30
67555324 AAGCCCATAC
* *
67555334 ATTTCATTTA-TTTCACATTTTAGTCCCTCA
1 ATTTCATTTATTTTCACAATTTAATCCCT-A
*
67555364 ATTTC--TCATTTTCACAATTTAATCCCTA
1 ATTTCATTTATTTTCACAATTTAATCCCTA
67555392 ATATTCATTT
1 AT-TTCATTT
67555402 TTACTCAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
28 5 0.17
29 19 0.63
30 5 0.17
31 1 0.03
ACGTcount: A:0.26, C:0.22, G:0.01, T:0.50
Consensus pattern (30 bp):
ATTTCATTTATTTTCACAATTTAATCCCTA
Found at i:67555378 original size:29 final size:27
Alignment explanation
Indices: 67555344--67555402 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 27
67555334 ATTTCATTTA
* * *
67555344 TTTCACATTTTAGTCCCTCAATTTCTCAT
1 TTTCACAATTTAATCCCT-AATAT-TCAT
67555373 TTTCACAATTTAATCCCTAATATTCAT
1 TTTCACAATTTAATCCCTAATATTCAT
67555400 TTT
1 TTT
67555403 TACTCAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 7 0.26
28 4 0.15
29 16 0.59
ACGTcount: A:0.25, C:0.24, G:0.02, T:0.49
Consensus pattern (27 bp):
TTTCACAATTTAATCCCTAATATTCAT
Found at i:67582636 original size:25 final size:26
Alignment explanation
Indices: 67582597--67582656 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 26
67582587 CCATGTACAT
* *
67582597 GTATGCTCA-TACGAGCTGTGAATCA
1 GTATGCTCACTACGAGATGTAAATCA
**
67582622 GTATGCTCACT-CGAGATGTAAATTG
1 GTATGCTCACTACGAGATGTAAATCA
67582647 GTATGCTCAC
1 GTATGCTCAC
67582657 ATGAGTTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 29 0.97
26 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
GTATGCTCACTACGAGATGTAAATCA
Found at i:67584453 original size:25 final size:25
Alignment explanation
Indices: 67584425--67584507 Score: 96
Period size: 25 Copynumber: 3.3 Consensus size: 25
67584415 TAGTTTGTGA
*
67584425 GAGCATACCAA-TCTATAGCTCGAGT
1 GAGCATACCAATTC-ACAGCTCGAGT
*
67584450 GAGCATACCGATTCACAGCTCGAGT
1 GAGCATACCAATTCACAGCTCGAGT
* * **
67584475 GAGCATATCGATTCACAGCTCGTTT
1 GAGCATACCAATTCACAGCTCGAGT
67584500 GAGCATAC
1 GAGCATAC
67584508 ATGTACATGA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
25 49 0.96
26 2 0.04
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (25 bp):
GAGCATACCAATTCACAGCTCGAGT
Found at i:67586627 original size:21 final size:21
Alignment explanation
Indices: 67586587--67586630 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
67586577 ATTTTAGATA
*
67586587 TTTATGTATTTTTGTTTTTAT
1 TTTATGTATTTTTGTATTTAT
67586608 TTTATGTATTTATT-TATTTAT
1 TTTATGTATTT-TTGTATTTAT
67586629 TT
1 TT
67586631 ATCTTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.18, C:0.00, G:0.07, T:0.75
Consensus pattern (21 bp):
TTTATGTATTTTTGTATTTAT
Found at i:67587473 original size:21 final size:21
Alignment explanation
Indices: 67587449--67587499 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
67587439 GTGCCCCCTC
67587449 CACAC-GGCCATGTGTGGCCTT
1 CACACAGG-CATGTGTGGCCTT
**
67587470 CACACAGGTGTGTGTGGCCTT
1 CACACAGGCATGTGTGGCCTT
*
67587491 CACATAGGC
1 CACACAGGC
67587500 GTGCATGGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 23 0.92
22 2 0.08
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (21 bp):
CACACAGGCATGTGTGGCCTT
Found at i:67587508 original size:21 final size:21
Alignment explanation
Indices: 67587463--67587523 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
67587453 CGGCCATGTG
* * **
67587463 TGGCCTTCACACAGGTGTGTG
1 TGGCCTTCACATAGGCGTGCA
67587484 TGGCCTTCACATAGGCGTGCA
1 TGGCCTTCACATAGGCGTGCA
* *
67587505 TGGCCTTTACATGGGCGTG
1 TGGCCTTCACATAGGCGTG
67587524 TAGACTCCCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.15, C:0.25, G:0.33, T:0.28
Consensus pattern (21 bp):
TGGCCTTCACATAGGCGTGCA
Found at i:67593677 original size:19 final size:19
Alignment explanation
Indices: 67593655--67593721 Score: 98
Period size: 19 Copynumber: 3.5 Consensus size: 19
67593645 AATAATTATC
67593655 TTAATATTATTTTATTAAT
1 TTAATATTATTTTATTAAT
67593674 TTAATATTATTTTATTAAT
1 TTAATATTATTTTATTAAT
* * *
67593693 TTAATATTAATGTGATTATT
1 TTAATATT-ATTTTATTAAT
67593713 TTAATATTA
1 TTAATATTA
67593722 AATTTAATCT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 28 0.64
20 16 0.36
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (19 bp):
TTAATATTATTTTATTAAT
Found at i:67596710 original size:20 final size:19
Alignment explanation
Indices: 67596666--67596710 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
67596656 TGGTGAGATC
*
67596666 TAAAATAAATCAAACTAAT
1 TAAAATAAATAAAACTAAT
* *
67596685 TGAAATATATAAAACTTAAT
1 TAAAATAAATAAAAC-TAAT
67596705 TAAAAT
1 TAAAAT
67596711 CGACTCTACC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (19 bp):
TAAAATAAATAAAACTAAT
Found at i:67616179 original size:29 final size:29
Alignment explanation
Indices: 67616115--67616180 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
67616105 ATTTCATTTA
* * *
67616115 TTTCACAATTTAACCCCTAAATTTACACT
1 TTTCTCAATTTAACCCCTAAATATACAAT
* *
67616144 TTTCTCAATTTAATCCCT-AATATGCAAT
1 TTTCTCAATTTAACCCCTAAATATACAAT
67616172 TTTACTCAA
1 TTT-CTCAA
67616181 AATCACTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.33, C:0.24, G:0.02, T:0.41
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTAAATATACAAT
Found at i:67631656 original size:25 final size:25
Alignment explanation
Indices: 67631618--67631667 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
67631608 GAGATTGTAA
67631618 GACTGCATAAGGTCCCTGTCTCTAT
1 GACTGCATAAGGTCCCTGTCTCTAT
**
67631643 GACTGCATGGGGTCCCTGTCTCTAT
1 GACTGCATAAGGTCCCTGTCTCTAT
67631668 CATTTTCGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.24, T:0.32
Consensus pattern (25 bp):
GACTGCATAAGGTCCCTGTCTCTAT
Found at i:67633592 original size:43 final size:43
Alignment explanation
Indices: 67633504--67633614 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 43
67633494 TACCGAAATG
* * *
67633504 TGATTACATGTCAGACCATGTCTGGGACATTGACATTGTATTA
1 TGATTACATGTAAGACCATGTCTGGAACATTGACATCGTATTA
*
67633547 TGATTACATGTAAGACCATGTCTGGAATATTGGA-ATCGT-TATA
1 TGATTACATGTAAGACCATGTCTGGAACATT-GACATCGTAT-TA
* * * *
67633590 TGATTTCATATAAAACCCTGTCTGG
1 TGATTACATGTAAGACCATGTCTGG
67633615 GATAGTGGCA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 1 0.02
43 55 0.95
44 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGAACATTGACATCGTATTA
Found at i:67648901 original size:20 final size:20
Alignment explanation
Indices: 67648873--67648911 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67648863 ATCACATATT
*
67648873 TCATGAGCTCAGACCACAAC
1 TCATAAGCTCAGACCACAAC
*
67648893 TCATAAGCTCAGATCACAA
1 TCATAAGCTCAGACCACAA
67648912 AGTACCTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.31, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATAAGCTCAGACCACAAC
Found at i:67654465 original size:12 final size:11
Alignment explanation
Indices: 67654437--67654462 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
67654427 AAATATGATG
67654437 TTTTAAAATTA
1 TTTTAAAATTA
67654448 TTTTAAAATTA
1 TTTTAAAATTA
67654459 TTTT
1 TTTT
67654463 TAATGCTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATTA
Found at i:67660164 original size:16 final size:16
Alignment explanation
Indices: 67660143--67660173 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67660133 ATAAATTTGA
67660143 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
67660159 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
67660174 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:67667703 original size:25 final size:23
Alignment explanation
Indices: 67667684--67667765 Score: 92
Period size: 25 Copynumber: 3.3 Consensus size: 23
67667674 CGAGTGGAAG
67667684 ATCGGTATGCTCTCATGAGTAATAA
1 ATCGGTATGCTCTCATGAGT-A-AA
*
67667709 ATTGGTATGCTCTCATGAGCTATAA
1 ATCGGTATGCTCTCATGAG-TA-AA
*
67667734 ATCGGTATGCTCTCACGAGCTATAA
1 ATCGGTATGCTCTCATGAG-TA-AA
67667759 ATCGGTA
1 ATCGGTA
67667766 ACTCTAATGA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
25 52 0.98
26 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (23 bp):
ATCGGTATGCTCTCATGAGTAAA
Found at i:67669474 original size:13 final size:13
Alignment explanation
Indices: 67669453--67669491 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
67669443 AACTCTCTGA
*
67669453 GTCGGGTCACACG
1 GTCGCGTCACACG
*
67669466 GTCGCGTCACACA
1 GTCGCGTCACACG
*
67669479 GTCGTGTCACACG
1 GTCGCGTCACACG
67669492 CCCGTGTGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (13 bp):
GTCGCGTCACACG
Found at i:67669552 original size:12 final size:12
Alignment explanation
Indices: 67669535--67669564 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
67669525 CCCCACAAGC
67669535 CCATGTGCTAGG
1 CCATGTGCTAGG
67669547 CCATGTGCTAGG
1 CCATGTGCTAGG
67669559 CCATGT
1 CCATGT
67669565 AACTGCCTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.27
Consensus pattern (12 bp):
CCATGTGCTAGG
Found at i:67671674 original size:112 final size:113
Alignment explanation
Indices: 67671496--67671721 Score: 445
Period size: 112 Copynumber: 2.0 Consensus size: 113
67671486 GAGAAGATGA
67671496 TACATCTTTTTCTCTACTTTAATTTTAAGTATATTTATTAATTTACTATTTTAACCTTAGATTTT
1 TACATCTTTTTCTCTACTTTAATTTTAAGTATATTTATTAATTTACTATTTTAACCTTAGATTTT
67671561 AACTTAAAAATCATTTAAATTTGTGTCCATAAAAGTCCACTAACATAT
66 AACTTAAAAATCATTTAAATTTGTGTCCATAAAAGTCCACTAACATAT
67671609 TACATC-TTTTCTCTACTTTAATTTTAAGTATATTTATTAATTTACTATTTTAACCTTAGATTTT
1 TACATCTTTTTCTCTACTTTAATTTTAAGTATATTTATTAATTTACTATTTTAACCTTAGATTTT
67671673 AACTTAAAAATCATTTAAATTTGTGTCCATAAAAGTCCACTAACATAT
66 AACTTAAAAATCATTTAAATTTGTGTCCATAAAAGTCCACTAACATAT
67671721 T
1 T
67671722 GAATGGTCTA
Statistics
Matches: 113, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
112 107 0.95
113 6 0.05
ACGTcount: A:0.35, C:0.14, G:0.04, T:0.47
Consensus pattern (113 bp):
TACATCTTTTTCTCTACTTTAATTTTAAGTATATTTATTAATTTACTATTTTAACCTTAGATTTT
AACTTAAAAATCATTTAAATTTGTGTCCATAAAAGTCCACTAACATAT
Found at i:67675249 original size:27 final size:27
Alignment explanation
Indices: 67675211--67675262 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
67675201 CGACGATGAG
67675211 TATGACTTTCCCATAAGCCTTTTTTCA
1 TATGACTTTCCCATAAGCCTTTTTTCA
*
67675238 TATGACTTTCCCATAATCCTTTTTT
1 TATGACTTTCCCATAAGCCTTTTTT
67675263 TCGTGTCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.06, T:0.48
Consensus pattern (27 bp):
TATGACTTTCCCATAAGCCTTTTTTCA
Found at i:67676323 original size:21 final size:21
Alignment explanation
Indices: 67676281--67676323 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
67676271 TATAATCAGA
* **
67676281 ACATTAAAACATACATTTCAT
1 ACATTAAAACAAACATAACAT
*
67676302 ACATTAATACAAACATAACAT
1 ACATTAAAACAAACATAACAT
67676323 A
1 A
67676324 AATCATTCGT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (21 bp):
ACATTAAAACAAACATAACAT
Found at i:67677394 original size:39 final size:35
Alignment explanation
Indices: 67677310--67677380 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
67677300 TTTGACGAGC
67677310 TTCCAATTATATATAAAACATAAGAAAGAAAACTA
1 TTCCAATTATATATAAAACATAAGAAAGAAAACTA
*
67677345 TTCCAATTATATATAAAACATAGGAAAGAAAACTA
1 TTCCAATTATATATAAAACATAAGAAAGAAAACTA
67677380 T
1 T
67677381 GTGAGCACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.55, C:0.11, G:0.07, T:0.27
Consensus pattern (35 bp):
TTCCAATTATATATAAAACATAAGAAAGAAAACTA
Found at i:67682287 original size:13 final size:13
Alignment explanation
Indices: 67682269--67682293 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67682259 ATGCATGCAC
67682269 ACTCCTTTAAAAT
1 ACTCCTTTAAAAT
67682282 ACTCCTTTAAAA
1 ACTCCTTTAAAA
67682294 GTTTTAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (13 bp):
ACTCCTTTAAAAT
Found at i:67683699 original size:22 final size:22
Alignment explanation
Indices: 67683652--67683716 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
67683642 ATATAGTTTG
* * **
67683652 CATAATCAACAAATAGGGTTTG
1 CATAAACAACATATAGGGTTCA
* * *
67683674 CATATACTACATGTAGGGTTCA
1 CATAAACAACATATAGGGTTCA
67683696 CATAAACAACATATAGGGTTC
1 CATAAACAACATATAGGGTTC
67683717 GTATATTTGA
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (22 bp):
CATAAACAACATATAGGGTTCA
Found at i:67683759 original size:22 final size:22
Alignment explanation
Indices: 67683682--67683759 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 22
67683672 TGCATATACT
*
67683682 ACATGTAGGGTTCACATAAACA
1 ACATGTAGGGTTCACATAAATA
* ** **
67683704 ACATATAGGGTTCGTATATTTGA
1 ACATGTAGGGTTCACATAAAT-A
*
67683727 ACA-GATTGGGTTCACATAAATA
1 ACATG-TAGGGTTCACATAAATA
67683749 ACATGTAGGGT
1 ACATGTAGGGT
67683760 CTGCATAGTA
Statistics
Matches: 40, Mismatches: 13, Indels: 6
0.68 0.22 0.10
Matches are distributed among these distances:
22 24 0.60
23 16 0.40
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (22 bp):
ACATGTAGGGTTCACATAAATA
Found at i:67688130 original size:20 final size:21
Alignment explanation
Indices: 67688089--67688131 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
67688079 ATATGACCCA
* *
67688089 TTTAATTACTCTTTTGAAATT
1 TTTAATTACTCTCTTCAAATT
67688110 TTTAATTACT-TCTTCAAATT
1 TTTAATTACTCTCTTCAAATT
67688130 TT
1 TT
67688132 ACGGTGATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.28, C:0.12, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTAATTACTCTCTTCAAATT
Found at i:67689237 original size:30 final size:30
Alignment explanation
Indices: 67689203--67689262 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67689193 TTTAACAGTT
*
67689203 GATGACCAAAAA-AGAAAATTTGAATAATTA
1 GATGACCAAAAATA-AAAAATTGAATAATTA
**
67689233 GATGATTAAAAATAAAAAATTGAATAATTA
1 GATGACCAAAAATAAAAAATTGAATAATTA
67689263 AGTGATTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.58, C:0.03, G:0.12, T:0.27
Consensus pattern (30 bp):
GATGACCAAAAATAAAAAATTGAATAATTA
Found at i:67699906 original size:40 final size:39
Alignment explanation
Indices: 67699843--67700044 Score: 273
Period size: 40 Copynumber: 5.1 Consensus size: 39
67699833 CAGGATTTAA
* *
67699843 CCGGATATAGCTACTCGCTCAAATGCCTTTGGGACTTAGC
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGC
* *
67699883 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGATTTAGC
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGC
67699923 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGC
67699963 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGC
* *
67700003 CCGGA-ATTGGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGC
67700043 CC
1 CC
67700045 CGTTATCATC
Statistics
Matches: 150, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
39 3 0.02
40 146 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67712556 original size:25 final size:25
Alignment explanation
Indices: 67712522--67712578 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
67712512 AAATATGAGA
67712522 TTTGACTATGCAAACGTGACTATTC
1 TTTGACTATGCAAACGTGACTATTC
*
67712547 TTTGACTATGCAAATGTGACTATTC
1 TTTGACTATGCAAACGTGACTATTC
*
67712572 TATGACT
1 TTTGACT
67712579 TGTGTCCAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (25 bp):
TTTGACTATGCAAACGTGACTATTC
Found at i:67717932 original size:19 final size:19
Alignment explanation
Indices: 67717894--67717934 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
67717884 AAATCCGTCC
*
67717894 ATTTTAAGAAAACCCCTTT
1 ATTTTAAGAAAACCCATTT
67717913 ATTTTAGAGAAAA-CCATTT
1 ATTTTA-AGAAAACCCATTT
67717932 ATT
1 ATT
67717935 CGTTGAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (19 bp):
ATTTTAAGAAAACCCATTT
Found at i:67737132 original size:32 final size:33
Alignment explanation
Indices: 67737092--67737164 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
67737082 CAATTTTTAT
*
67737092 AAAATATTTT-CAGAAAATC-TGCAAAACAACAG
1 AAAATATTTTACACAAAATCATGC-AAACAACAG
* * *
67737124 AAAATATTTTACACAAATTCATTCAAACACCAG
1 AAAATATTTTACACAAAATCATGCAAACAACAG
67737157 AAAATATT
1 AAAATATT
67737165 AGCTTTTCCA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 10 0.29
33 23 0.66
34 2 0.06
ACGTcount: A:0.52, C:0.16, G:0.05, T:0.26
Consensus pattern (33 bp):
AAAATATTTTACACAAAATCATGCAAACAACAG
Found at i:67742575 original size:20 final size:20
Alignment explanation
Indices: 67742550--67742590 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
67742540 TCACATGTTG
*
67742550 TGTGTTTGAAAACCGTAACT
1 TGTGTTGGAAAACCGTAACT
*
67742570 TGTGTTGGAAAACTGTAACT
1 TGTGTTGGAAAACCGTAACT
67742590 T
1 T
67742591 TGCTTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (20 bp):
TGTGTTGGAAAACCGTAACT
Found at i:67746655 original size:16 final size:17
Alignment explanation
Indices: 67746619--67746655 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
67746609 TTTTAGATAT
*
67746619 TTATGTATTTTTTTATT
1 TTATGTATTTTTTTATC
67746636 TTATGTA-TTTTTTATC
1 TTATGTATTTTTTTATC
67746652 TTAT
1 TTAT
67746656 TTTAGTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.73
Consensus pattern (17 bp):
TTATGTATTTTTTTATC
Found at i:67750431 original size:14 final size:14
Alignment explanation
Indices: 67750414--67750441 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
67750404 GTCTATAATG
67750414 CCACTAAGTCAATA
1 CCACTAAGTCAATA
67750428 CCACTAAGTCAATA
1 CCACTAAGTCAATA
67750442 AATAAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.07, T:0.21
Consensus pattern (14 bp):
CCACTAAGTCAATA
Found at i:67752481 original size:43 final size:42
Alignment explanation
Indices: 67752294--67752485 Score: 165
Period size: 43 Copynumber: 4.5 Consensus size: 42
67752284 GGTTATCGAG
* * * *
67752294 ATGTGATTACATGTAAGACCCTATTTGGGATAGTGGCATTGT
1 ATGTGATTACATGTAAGACCCTGTGTGGGACAGTGGCATCGT
* * * *
67752336 ATTGTGATTACATGTAAGACCCTGTATGGGATAGTGACATTGT
1 A-TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGCATCGT
** *
67752379 ACTGTGATTATGTGTAAGACCATGTGTGGGACA-TCGGCATCGTT
1 A-TGTGATTACATGTAAGACCCTGTGTGGGACAGT-GGCATCG-T
* * *
67752423 AAT-CGACTT-CGTGTAAGACCCTGTGTAGGACAGTGGCATCGAT
1 -ATGTGA-TTACATGTAAGACCCTGTGTGGGACAGTGGCATCG-T
*
67752466 ATGTGATAACATGTAAGACC
1 ATGTGATTACATGTAAGACC
67752486 ATATCTAGGA
Statistics
Matches: 123, Mismatches: 19, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
42 5 0.04
43 112 0.91
44 5 0.04
45 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCCTGTGTGGGACAGTGGCATCGT
Found at i:67758909 original size:43 final size:43
Alignment explanation
Indices: 67758848--67759038 Score: 219
Period size: 43 Copynumber: 4.4 Consensus size: 43
67758838 GTTATCGAGA
*
67758848 TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGCATTGTAT
1 TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGCATCGTAT
* * *
67758891 TGTGATTACATGTAAGACCCTGAGTGGGACAATGGCATTGTAT
1 TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGCATCGTAT
* * *
67758934 TGTGATTACGTGTAAGACCATGTGTGGGACA-TCGGCATCGTTAA
1 TGTGATTACATGTAAGACCCTGTGTGGGACAGT-GGCATCG-TAT
* **
67758978 T-CGACTT-TGTGTAAGACCCTGTGTGGGACAGTGGCATCG-AT
1 TGTGA-TTACATGTAAGACCCTGTGTGGGACAGTGGCATCGTAT
*
67759019 ATGTGATAACATGTAAGACC
1 -TGTGATTACATGTAAGACC
67759039 ATATCTAGGA
Statistics
Matches: 126, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 3 0.02
43 116 0.92
44 6 0.05
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGCATCGTAT
Found at i:67762246 original size:41 final size:40
Alignment explanation
Indices: 67762171--67762338 Score: 171
Period size: 41 Copynumber: 4.1 Consensus size: 40
67762161 GCAAAAATTG
*
67762171 TAAAACACATAGCAATAGCGGCG--TTTTACCAAAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTTA--AAAAACGCCAC
*
67762212 TAAAAACAGAGCAATAGCGGCG-TTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTT--TAAAAAACGCCAC
* * ** *
67762253 TAAAAACCGAGCATTAGCGGCGCTTTTTGCAAAACACCAC
1 TAAAAACAGAGCAATAGCGGCGCTTTTTAAAAAACGCCAC
* * *
67762293 TAAAAACCAGAGCACTAGCGGCGCTTTTGAAAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTTAAAAAACGCCAC
67762334 TAAAA
1 TAAAA
67762339 GTCATATAAC
Statistics
Matches: 107, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
40 31 0.29
41 70 0.65
42 4 0.04
43 2 0.02
ACGTcount: A:0.40, C:0.24, G:0.18, T:0.17
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTTAAAAAACGCCAC
Found at i:67762510 original size:7 final size:7
Alignment explanation
Indices: 67762495--67762548 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
67762485 TTAATTATCA
*
67762495 TTATAGT
1 TTATGGT
67762502 TTATGGT
1 TTATGGT
67762509 TTATGGT
1 TTATGGT
* *
67762516 TTAAGAT
1 TTATGGT
*
67762523 ATATGGT
1 TTATGGT
*
67762530 TTAGGGT
1 TTATGGT
*
67762537 TTAAGGT
1 TTATGGT
67762544 TTATG
1 TTATG
67762549 AGTTAACTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:67762527 original size:21 final size:21
Alignment explanation
Indices: 67762503--67762587 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
67762493 CATTATAGTT
*
67762503 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* *
67762524 TATGGTTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
**
67762545 TATGAGTTAACTATAGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
67762570 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
67762588 GTTTAGGAGT
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 31 0.61
22 3 0.06
24 3 0.06
25 14 0.27
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:67762566 original size:46 final size:46
Alignment explanation
Indices: 67762514--67762603 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
67762504 ATGGTTTATG
*
67762514 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTATA
67762560 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
67762604 GTATTTGAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.30, C:0.02, G:0.26, T:0.42
Consensus pattern (46 bp):
GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTATA
Found at i:67762650 original size:14 final size:15
Alignment explanation
Indices: 67762625--67762653 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
67762615 TTTATGATGA
67762625 ATTATGGATTTAGGG
1 ATTATGGATTTAGGG
67762640 ATTAT-GATTTAGGG
1 ATTATGGATTTAGGG
67762654 TTTAGGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (15 bp):
ATTATGGATTTAGGG
Found at i:67762659 original size:7 final size:7
Alignment explanation
Indices: 67762633--67762758 Score: 58
Period size: 7 Copynumber: 17.7 Consensus size: 7
67762623 GAATTATGGA
67762633 TTTAGGG
1 TTTAGGG
* * *
67762640 ATTATGA
1 TTTAGGG
67762647 TTTAGGG
1 TTTAGGG
67762654 TTTAGGG
1 TTTAGGG
*
67762661 GTTAGGG
1 TTTAGGG
*
67762668 -TTAGAG
1 TTTAGGG
*
67762674 TTTAAGG
1 TTTAGGG
* *
67762681 TGTAAAGG
1 T-TTAGGG
*
67762689 TTTGGGG
1 TTTAGGG
*
67762696 TTAAGGG
1 TTTAGGG
*
67762703 TTAAGGG
1 TTTAGGG
*
67762710 TTTAGAG
1 TTTAGGG
*
67762717 TTTAGTG
1 TTTAGGG
67762724 TTTATGGG
1 TTTA-GGG
*
67762732 -ATAGGGG
1 TTTA-GGG
*
67762739 TTAAGAGG
1 TTTAG-GG
*
67762747 TTTAGAG
1 TTTAGGG
67762754 TTTAG
1 TTTAG
67762759 ATTAATTAGT
Statistics
Matches: 88, Mismatches: 26, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
6 5 0.06
7 68 0.77
8 15 0.17
ACGTcount: A:0.24, C:0.00, G:0.38, T:0.38
Consensus pattern (7 bp):
TTTAGGG
Found at i:67763967 original size:15 final size:15
Alignment explanation
Indices: 67763947--67763977 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67763937 TTGAAGGTAA
67763947 CCTACTGGTTTTCTT
1 CCTACTGGTTTTCTT
67763962 CCTACTGGTTTTCTT
1 CCTACTGGTTTTCTT
67763977 C
1 C
67763978 TAATTCAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.29, G:0.13, T:0.52
Consensus pattern (15 bp):
CCTACTGGTTTTCTT
Found at i:67765205 original size:12 final size:12
Alignment explanation
Indices: 67765188--67765237 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
67765178 AGTTGCTGGA
67765188 AATTGAGATGTT
1 AATTGAGATGTT
*
67765200 AATTGAGGTGTAT
1 AATTGAGATGT-T
* *
67765213 AAAT--GTTGTT
1 AATTGAGATGTT
67765223 AATTGAGATGTT
1 AATTGAGATGTT
67765235 AAT
1 AAT
67765238 ATGTGTGTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
10 4 0.13
11 4 0.13
12 18 0.60
13 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (12 bp):
AATTGAGATGTT
Found at i:67765241 original size:23 final size:23
Alignment explanation
Indices: 67765196--67765241 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
67765186 GAAATTGAGA
*
67765196 TGTTAATTGAGGTGTATAAATGT
1 TGTTAATTGAGATGTATAAATGT
67765219 TGTTAATTGAGATGT-TAATATGT
1 TGTTAATTGAGATGTATAA-ATGT
67765242 GTGTGTGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (23 bp):
TGTTAATTGAGATGTATAAATGT
Found at i:67765246 original size:2 final size:2
Alignment explanation
Indices: 67765239--67765281 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
67765229 GATGTTAATA
67765239 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
67765281 T
1 T
67765282 CCCTTCTGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:67765665 original size:23 final size:23
Alignment explanation
Indices: 67765639--67766178 Score: 451
Period size: 23 Copynumber: 23.4 Consensus size: 23
67765629 AAATGTTGTT
67765639 AATTG-AGATGTTAAAGTGCTGCA
1 AATTGAAG-TGTTAAAGTGCTGCA
*
67765662 AATTGAAGTGTTTAAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
67765685 AATTGAACTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* * *
67765708 AATTGAAATGTTAGAGTGCTGTA
1 AATTGAAGTGTTAAAGTGCTGCA
* * *
67765731 AATTGGAGTGTTTAAGTACTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
67765754 AATTGAAGTGTT-TAGTTGCTGGA
1 AATTGAAGTGTTAAAG-TGCTGCA
* **
67765777 AATTG-AGATGTTTAAA-TGTTGTT
1 AATTGAAG-TG-TTAAAGTGCTGCA
*
67765800 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
67765823 AATTGAAGTGTTTTAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
67765846 AATTGAAGTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* **
67765869 AATTGAAGTGTTTAAA-TGTTGTT
1 AATTGAAGTG-TTAAAGTGCTGCA
*
67765892 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
67765915 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
67765938 AATTGAAGTGCTTAAA-TGTTGCA
1 AATTGAAGTG-TTAAAGTGCTGCA
** **
67765961 AATTGAAGTGCTATAAA-TATTGTT
1 AATTGAAGTG-T-TAAAGTGCTGCA
*
67765985 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* **
67766008 AATTGAAGTGTTTAAA-TGTTGTT
1 AATTGAAGTG-TTAAAGTGCTGCA
*
67766031 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
67766054 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
67766077 AATTGAAGTGCTTAAA-TGTTGCA
1 AATTGAAGTG-TTAAAGTGCTGCA
* ** **
67766100 AATTGAAGTGTTATAAATATTGTT
1 AATTGAAGTGTTA-AAGTGCTGCA
*
67766124 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
67766147 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
67766170 AATTGAAGT
1 AATTGAAGT
67766179 TGTGGATTAT
Statistics
Matches: 417, Mismatches: 78, Indels: 44
0.77 0.14 0.08
Matches are distributed among these distances:
22 35 0.08
23 312 0.75
24 69 0.17
25 1 0.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (23 bp):
AATTGAAGTGTTAAAGTGCTGCA
Found at i:67765697 original size:46 final size:46
Alignment explanation
Indices: 67765649--67766178 Score: 604
Period size: 46 Copynumber: 11.5 Consensus size: 46
67765639 AATTGAGATG
* * *
67765649 TTAAAGTGCTGCAAATTGAAGTGTTTAAA-TGCTGTAAATTGAACTG-
1 TTAAA-TGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGT
* * * * *
67765695 TTAAAGTGCTGCAAATTGAAATGTTAGAGTGCTGTAAATTGGAGTGT
1 TTAAA-TGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGT
* * * * *
67765742 TTAAGTACTGCAAATTGAAGTGTT-TAGTTGCTGGAAATTG-AGATGT
1 TTAAATGCTGTAAATTGAAGTGTTAAAG-TGCTGCAAATTGAAG-TGT
* * *
67765788 TTAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGT
*
67765834 TTTAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGT
* * *
67765880 TTAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGT
* *
67765926 TTGAATGCTGTAAATTGAAGTGCTTAAA-TGTTGCAAATTGAAGTGCT
1 TTAAATGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTG-T
* ** * *
67765973 ATAAATATTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGT
* * *
67766019 TTAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGT
* *
67766065 TTGAATGCTGTAAATTGAAGTGCTTAAA-TGTTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGT
** * *
67766111 TATAAATATTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 T-TAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGT
*
67766158 TTGAATGCTGTAAATTGAAGT
1 TTAAATGCTGTAAATTGAAGT
67766179 TGTGGATTAT
Statistics
Matches: 417, Mismatches: 55, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
45 8 0.02
46 324 0.78
47 85 0.20
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (46 bp):
TTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGT
Found at i:67768067 original size:17 final size:18
Alignment explanation
Indices: 67768033--67768080 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
67768023 AGTTTGGTGC
*
67768033 TTTATTATTTTGATTCTATA
1 TTTATTA-TTT-AATCTATA
*
67768053 TTTA-TATTTAATCTATT
1 TTTATTATTTAATCTATA
67768070 TTTATTATTTA
1 TTTATTATTTA
67768081 TTTTAGTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 10 0.40
18 9 0.36
19 2 0.08
20 4 0.16
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTATTATTTAATCTATA
Found at i:67768311 original size:43 final size:43
Alignment explanation
Indices: 67768250--67768348 Score: 189
Period size: 43 Copynumber: 2.3 Consensus size: 43
67768240 AAAATTTCAT
67768250 GACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCAC
1 GACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCAC
*
67768293 GACCTTTAGCTGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCAC
1 GACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCAC
67768336 GACCTTTAGCGGC
1 GACCTTTAGCGGC
67768349 ATTTTTTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.20
Consensus pattern (43 bp):
GACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCAC
Found at i:67768666 original size:18 final size:18
Alignment explanation
Indices: 67768639--67768677 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
67768629 GAATAAAATT
*
67768639 ATTAAAATTATGAGTTTA
1 ATTAAAATTATGAATTTA
* *
67768657 ATTAATATTATTAATTTA
1 ATTAAAATTATGAATTTA
67768675 ATT
1 ATT
67768678 TATTTATTGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (18 bp):
ATTAAAATTATGAATTTA
Found at i:67770931 original size:73 final size:73
Alignment explanation
Indices: 67770812--67770964 Score: 288
Period size: 73 Copynumber: 2.1 Consensus size: 73
67770802 AAAATGAGTT
*
67770812 CTTAAAGCATTTGATTTTATATAACAAATCAAATTAGATTGTTGACTCAAACTCGTATATTATAT
1 CTTAAAGCATTTGATTTTATATAACAAATCAAATTAGATTGTTGACTCAAACTCATATATTATAT
67770877 TTGTTTTC
66 TTGTTTTC
67770885 CTTAAAGCATTTGATTTTATATAACAAATCAAATTAGATTGTTGACTCAAACTCATATATTATAT
1 CTTAAAGCATTTGATTTTATATAACAAATCAAATTAGATTGTTGACTCAAACTCATATATTATAT
67770950 TTGTTTTC
66 TTGTTTTC
67770958 CTGTAAA
1 CT-TAAA
67770965 AAAAAACCCT
Statistics
Matches: 78, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
73 74 0.95
74 4 0.05
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.43
Consensus pattern (73 bp):
CTTAAAGCATTTGATTTTATATAACAAATCAAATTAGATTGTTGACTCAAACTCATATATTATAT
TTGTTTTC
Found at i:67772522 original size:31 final size:30
Alignment explanation
Indices: 67772474--67772531 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
67772464 TAGAATTCAA
67772474 ATTTATTATATTATTTTAAAATATTTATGT
1 ATTTATTATATTATTTTAAAATATTTATGT
*
67772504 ATTT-TTATATATATTTTTAAAATTTTTA
1 ATTTATTATAT-TA-TTTTAAAATATTTA
67772532 GAATATGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 6 0.24
30 6 0.24
31 13 0.52
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (30 bp):
ATTTATTATATTATTTTAAAATATTTATGT
Found at i:67775521 original size:39 final size:39
Alignment explanation
Indices: 67775467--67775647 Score: 265
Period size: 39 Copynumber: 4.6 Consensus size: 39
67775457 CAGTGATGTT
*
67775467 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
67775506 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
67775545 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
67775584 TAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
67775623 TGTCCGGGC-TAAAGTCTCGCAGGCT
1 TATCCGGACTTAAGGTC-CGCAGGCT
67775648 TCGAGCTGGT
Statistics
Matches: 131, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
38 6 0.05
39 125 0.95
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:67775656 original size:39 final size:39
Alignment explanation
Indices: 67775467--67775699 Score: 226
Period size: 39 Copynumber: 6.0 Consensus size: 39
67775457 CAGTGATGTT
**
67775467 TATCCGGACTTAGGGTCCGCAGGCTAT-GTGCTGGAATTA
1 TATCCGGACTTAAAGTCCGCAGGCT-TCGTGCTGGAATTA
**
67775506 TATCCGGACTTAGGGTCCGCAGGCTAT-GTGCTGGAATTA
1 TATCCGGACTTAAAGTCCGCAGGCT-TCGTGCTGGAATTA
67775545 TATCCGGACTTAAAGTCCGCAGGCTAT-GTGCTGGAATTA
1 TATCCGGACTTAAAGTCCGCAGGCT-TCGTGCTGGAATTA
* * * *
67775584 TAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAAGTCCGCAGGCTTCGTGCTGGAATTA
* * * *
67775623 TGTCCGGGC-TAAAGTCTCGCAGGCTTCGAGCTGGTATTA
1 TATCCGGACTTAAAGTC-CGCAGGCTTCGTGCTGGAATTA
** * *
67775662 TA-CCGGGTTTAAATTCCCGCAAGCTT-GTGCTGGTAATT
1 TATCCGGACTTAAAGT-CCGCAGGCTTCGTGCTGG-AATT
67775700 GGTTTCAAGT
Statistics
Matches: 169, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 17 0.10
39 151 0.89
40 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAAGTCCGCAGGCTTCGTGCTGGAATTA
Found at i:67775682 original size:117 final size:117
Alignment explanation
Indices: 67775470--67775699 Score: 279
Period size: 117 Copynumber: 2.0 Consensus size: 117
67775460 TGATGTTTAT
* * * ** *
67775470 CCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGCTATGT
1 CCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTATGA
*
67775535 GCTGGAATTATATCCGGACTTAAAGTCCGCAGGCTATGTGCTGG-AATTATAA
66 GCTGGAATTATATCCGGACTTAAAGTCCGCAAGCT-TGTGCTGGTAATTATAA
* *
67775587 CCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCTCGCAGGCT-TC
1 CCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTC-CGCAGGCTAT-
* ** *
67775650 GAGCTGGTATTATA-CCGGGTTTAAATTCCCGCAAGCTTGTGCTGGTAATT
64 GAGCTGGAATTATATCCGGACTTAAAGT-CCGCAAGCTTGTGCTGGTAATT
67775700 GGTTTCAAGT
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
116 24 0.25
117 72 0.75
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (117 bp):
CCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTATGA
GCTGGAATTATATCCGGACTTAAAGTCCGCAAGCTTGTGCTGGTAATTATAA
Found at i:67783353 original size:39 final size:39
Alignment explanation
Indices: 67783294--67783526 Score: 258
Period size: 39 Copynumber: 6.0 Consensus size: 39
67783284 CAATGATGTT
*
67783294 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
67783333 TATCAGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
67783372 TATCCGGACTTAAGGTCCGCAGGATATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
67783411 TAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
67783450 TGTCCGGGC-TAAAGTCCCGCAGGCT-TCGAGCTGGTATTA
1 TATCCGGACTTAAGGT-CCGCAGGCTAT-GTGCTGGAATTA
** **
67783489 TA-CCGGGTTTAAATTCCCGCAGGCT-TGTGCTGGTAATT
1 TATCCGGACTTAAGGT-CCGCAGGCTATGTGCTGG-AATT
67783527 GGTTTCAAGT
Statistics
Matches: 169, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
38 16 0.09
39 153 0.91
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:67790661 original size:26 final size:26
Alignment explanation
Indices: 67790630--67790737 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
67790620 TGAAATTCCC
67790630 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
67790656 ATCATGGAACATTTACCT-AACACATT
1 ATCATGGAACATTTACCTAAAC-CATT
* *
67790682 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
67790708 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
67790734 ATCA
1 ATCA
67790738 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 3 0.04
26 71 0.93
27 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:67791081 original size:23 final size:24
Alignment explanation
Indices: 67791041--67791088 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
67791031 TTTGTTCGTT
* *
67791041 TGTTTGATTTACTATTTGTAAACA
1 TGTTTGATTTAATATTTGCAAACA
*
67791065 TGTTTG-TTTAATGTTTGCAAACA
1 TGTTTGATTTAATATTTGCAAACA
67791088 T
1 T
67791089 ATAAACGAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.27, C:0.08, G:0.15, T:0.50
Consensus pattern (24 bp):
TGTTTGATTTAATATTTGCAAACA
Found at i:67793440 original size:16 final size:16
Alignment explanation
Indices: 67793399--67793440 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
67793389 AAATATTTAT
*
67793399 AAAATA-ATAAAATTA
1 AAAATATATAAAAGTA
67793414 AAAATATTATAAAAGTA
1 AAAATA-TATAAAAGTA
67793431 AAAATATATA
1 AAAATATATA
67793441 TTTAATGAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 6 0.25
16 4 0.17
17 14 0.58
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (16 bp):
AAAATATATAAAAGTA
Found at i:67794685 original size:7 final size:7
Alignment explanation
Indices: 67794671--67794702 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
67794661 TTAAAAATGT
67794671 AAAA-AA
1 AAAAGAA
67794677 AAAAGAA
1 AAAAGAA
67794684 AAAAGAA
1 AAAAGAA
67794691 AAAAGAA
1 AAAAGAA
67794698 AAAAG
1 AAAAG
67794703 GGGGAATGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.16
7 21 0.84
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:67796920 original size:3 final size:3
Alignment explanation
Indices: 67796912--67796955 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
67796902 AAACAGAGAC
67796912 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
67796956 AGGGTTAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:67797948 original size:17 final size:17
Alignment explanation
Indices: 67797917--67797954 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
67797907 TAATCTATTT
*
67797917 AAAATAATATTAAAATA
1 AAAATAATATTAAAAGA
67797934 AAAAT-ATATTAAAAAGA
1 AAAATAATATT-AAAAGA
67797951 AAAA
1 AAAA
67797955 AAAATCAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
AAAATAATATTAAAAGA
Found at i:67799285 original size:18 final size:18
Alignment explanation
Indices: 67799264--67799312 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
67799254 ATATGCACAA
*
67799264 TCAGATACATATACAAAT
1 TCAGATTCATATACAAAT
* * *
67799282 TCAGTTTCAGATTCAAAT
1 TCAGATTCATATACAAAT
67799300 TCAGATTCATATA
1 TCAGATTCATATA
67799313 TGCAGAATCC
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (18 bp):
TCAGATTCATATACAAAT
Found at i:67799879 original size:17 final size:18
Alignment explanation
Indices: 67799852--67799885 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
67799842 TGACATGCCC
*
67799852 GTGTGGGCCCATACGCCT
1 GTGTGGGCCCACACGCCT
67799870 GTGT-GGCCCACACGCC
1 GTGTGGGCCCACACGCC
67799886 CACATGGCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.12, C:0.38, G:0.32, T:0.18
Consensus pattern (18 bp):
GTGTGGGCCCACACGCCT
Found at i:67803610 original size:28 final size:27
Alignment explanation
Indices: 67803529--67803613 Score: 127
Period size: 26 Copynumber: 3.1 Consensus size: 27
67803519 TATTTTGGAG
67803529 AGAAGAGATTTTTTTTTTTGAGATTCA
1 AGAAGAGATTTTTTTTTTTGAGATTCA
*
67803556 AGAAGAGA-TTTTTTTATTGAGATTCA
1 AGAAGAGATTTTTTTTTTTGAGATTCA
* *
67803582 AGAGGGGATTTTTCTTTTTTGAGATTCA
1 AGAAGAGATTTTT-TTTTTTGAGATTCA
67803610 AGAA
1 AGAA
67803614 CAAAAAATCA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
26 23 0.45
27 12 0.24
28 16 0.31
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.44
Consensus pattern (27 bp):
AGAAGAGATTTTTTTTTTTGAGATTCA
Found at i:67804476 original size:3 final size:3
Alignment explanation
Indices: 67804468--67804685 Score: 71
Period size: 3 Copynumber: 74.0 Consensus size: 3
67804458 TTCTCATCAC
* * *
67804468 TAT TAT TAT AATT TAT TAT TGT TACT TAT TAT T-T TAC TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
67804514 CTAA TA- TAT CAT CAT TAT CAT TAT TAT TAT TAT TAT TAG CAC TACT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * * *
67804560 T-T TAT TAC TAT TAT T-T AAT ATAT TAT TTT TAC TAT TAT CAT CA-
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
67804603 TAT TGT TAC TAT TAC TAT TA- TAT TAT TA- TGT TAT TA- TAT CTTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
** * *
67804646 TGC TAT TAT TAT TGT TA- TAT T-T T-T CTAT TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
67804686 ATTTTCTTTT
Statistics
Matches: 155, Mismatches: 43, Indels: 34
0.67 0.19 0.15
Matches are distributed among these distances:
2 18 0.12
3 124 0.80
4 13 0.08
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:67804510 original size:11 final size:13
Alignment explanation
Indices: 67804480--67804511 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
67804470 TTATTATAAT
67804480 TTATTATTGTTAC
1 TTATTATTGTTAC
67804493 TTATTATT-TTAC
1 TTATTATTGTTAC
67804505 -TATTATT
1 TTATTATT
67804512 ATCTAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.37
12 4 0.21
13 8 0.42
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (13 bp):
TTATTATTGTTAC
Found at i:67804625 original size:20 final size:18
Alignment explanation
Indices: 67804578--67804626 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
67804568 TATTATTTAA
67804578 TATATTAT-TTTTACTAT
1 TATATTATATTTTACTAT
*
67804595 TATCATCATATTGTTACTAT
1 TAT-ATTATATT-TTACTAT
67804615 TACTATTATATT
1 TA-TATTATATT
67804627 ATTATGTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 3 0.12
18 4 0.15
19 2 0.08
20 16 0.62
21 1 0.04
ACGTcount: A:0.31, C:0.10, G:0.02, T:0.57
Consensus pattern (18 bp):
TATATTATATTTTACTAT
Found at i:67804676 original size:19 final size:21
Alignment explanation
Indices: 67804626--67804698 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 21
67804616 ACTATTATAT
67804626 TATTA-TGTTATTATATCTTTTGC
1 TATTATTGTTATTATA--TTTT-C
* *
67804649 TATTATTATTGTTATATTTTTC
1 TATTATTGTTATTATA-TTTTC
67804671 TATTATTGTTATTATATTTTC
1 TATTATTGTTATTATATTTTC
*
67804692 TTTTATT
1 TATTATT
67804699 TTTGTATTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
21 11 0.26
22 15 0.35
23 9 0.21
24 8 0.19
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.67
Consensus pattern (21 bp):
TATTATTGTTATTATATTTTC
Found at i:67804818 original size:26 final size:26
Alignment explanation
Indices: 67804762--67804819 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
67804752 TTTTTTAGCA
67804762 TATTTATTTTATTTACATATCATTAC
1 TATTTATTTTATTTACATATCATTAC
*
67804788 T-TTTATTATTATTT-CATCATC-TTTC
1 TATTTATT-TTATTTACAT-ATCATTAC
67804813 TATTTAT
1 TATTTAT
67804820 AGTTTTTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.26, C:0.12, G:0.00, T:0.62
Consensus pattern (26 bp):
TATTTATTTTATTTACATATCATTAC
Found at i:67808629 original size:13 final size:13
Alignment explanation
Indices: 67808611--67808639 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
67808601 TTTACTTTCC
67808611 AGAGAGGTAGAAA
1 AGAGAGGTAGAAA
67808624 AGAGAGGTAGAAA
1 AGAGAGGTAGAAA
67808637 AGA
1 AGA
67808640 AAATCTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.38, T:0.07
Consensus pattern (13 bp):
AGAGAGGTAGAAA
Found at i:67817041 original size:206 final size:204
Alignment explanation
Indices: 67816605--67817938 Score: 1990
Period size: 205 Copynumber: 6.5 Consensus size: 204
67816595 GCAGCATAAT
* *
67816605 AGATCTGGCCTACAGATGTTAT-ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACA
1 AGATCTGACCTTCAGATGTT-TCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACA
* *
67816669 AGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTATGATGAAGCAAATCTAAGATG
65 AGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATG
* * * *
67816734 ATTTATCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCA
130 ATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCACTTTAATGGAGAGCA
67816799 GACACATAGC
195 GACACATAGC
*
67816809 AGATCTCACCTTCAGAATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTAC
1 AGATCTGACCTTCAG-ATG-TTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTAC
67816874 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACTGATGAAGCAAATCTAAGA
64 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTAC-GATGAAGCAAATCTAAGA
* * * *
67816939 TGATTTGTCGTGTCTGTCATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCACTTTGATAGAAA
128 TGATTTGTCGTCTCTGT-ATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCACTTTAATGGAGA
*
67817004 GCAGATACATAGC
192 GCAGACACATAGC
* *
67817017 AGATCTGACCTTTAGATGTTTCACTGAAGCAGATTCAAGATGGTTTGGCATCCTTGTGTTTACAA
1 AGATCTGACCTTCAGATGTTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAA
* *
67817082 GGAACAAATTGAAGACATAGCTGATTTGGCTTTCACGTGATTATGATGAAGCAAATCTAAGATGA
66 GGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGA
* * * *
67817147 TTTGTGGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAG
131 TTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCACTTTAATGGAGAGCAG
67817212 ACACATAGC
196 ACACATAGC
67817221 AGATCTCG-CCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTAC
1 AGATCT-GACCTTCAGATG-TTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTAC
** *
67817285 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAAAAAATCTAATAT
64 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGAT
* * * * *
67817350 GATTTTTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTCTAATAGAGAGC
129 GATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCACTTTAATGGAGAGC
67817415 AGACACATAGC
194 AGACACATAGC
* *
67817426 AGATCTCG-CCTTTAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTTTTTAC
1 AGATCT-GACCTTCAGATG-TTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTAC
**
67817490 AAGGAATGAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGAT
64 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGAT
* * * *
67817555 GATTTGTGGTCTTTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAGC
129 GATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCACTTTAATGGAGAGC
*
67817620 AGATACATAGC
194 AGACACATAGC
* * ** * *
67817631 AGATCTGACCTTCAGATGTTTATACTGAAGCAAAATCCAAGATAATTTGGCATCCTTGTGCTTAT
1 AGATCTGACCTTCAGATGTTT-CACTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGTTTAC
* *
67817696 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTGCACGTGATTACAATGAAGCAAATCTAAGAT
64 AAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGAT
* * * * *
67817761 GATTTGTGGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCCCCACTTCAATGGAGAAC
129 GATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCACTTTAATGGAGAGC
*
67817826 AGATACATAGC
194 AGACACATAGC
* * * *
67817837 AGATCTAACCTTCAGATGTTTATACTGAAGCAAGATCTAAGATGATTTGGCATCCTTGTGTCTTA
1 AGATCTGACCTTCAGATGTTT-CACTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGT-TTA
* *
67817902 CAAGGAACAAATCGAAGACATAGCAGATTTGACTTTC
63 CAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTC
67817939 GGATGTTCCC
Statistics
Matches: 1042, Mismatches: 77, Indels: 19
0.92 0.07 0.02
Matches are distributed among these distances:
204 86 0.08
205 424 0.41
206 392 0.38
207 72 0.07
208 68 0.07
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (204 bp):
AGATCTGACCTTCAGATGTTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAA
GGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGA
TTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCACTTTAATGGAGAGCAG
ACACATAGC
Found at i:67818125 original size:44 final size:44
Alignment explanation
Indices: 67818077--67818320 Score: 221
Period size: 44 Copynumber: 5.6 Consensus size: 44
67818067 CCGTATTGTC
* *
67818077 AGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTAT
1 AGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGCTTAT
* * * *
67818121 AGGGAACAAATTGAAGATAGCAGATCTGACATTCCTGTGCTTA-
1 AGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGCTTAT
* * ** * *
67818164 CGGTGAAGC-AGATCGAAGATTTCAGCA--TGGAATCCCTGTACTTAT
1 AGG-GAA-CAAG-TTGAAGATAGCAG-ATTTGGCATCCCTGTGCTTAT
*
67818209 AGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTAT
1 AGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGCTTAT
** * * *
67818253 AGGGAACAAGTTGAAGGCAACAGATTTGGCATCCCTATGTTTAT
1 AGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGCTTAT
* *
67818297 GGGGAAC-AGATCGAAGA-AGCAGAT
1 AGGGAACAAG-TTGAAGATAGCAGAT
67818321 CAAGAACTCA
Statistics
Matches: 161, Mismatches: 30, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
42 1 0.01
43 21 0.13
44 125 0.78
45 13 0.08
46 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.25
Consensus pattern (44 bp):
AGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGCTTAT
Found at i:67818535 original size:18 final size:17
Alignment explanation
Indices: 67818512--67818550 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
67818502 CCCAATACCC
67818512 AAAACAAAAACAAAAACA
1 AAAACAAAAA-AAAAACA
*
67818530 AAAACAAAAAAAAAAGA
1 AAAACAAAAAAAAAACA
67818547 AAAA
1 AAAA
67818551 GAAACCCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.87, C:0.10, G:0.03, T:0.00
Consensus pattern (17 bp):
AAAACAAAAAAAAAACA
Found at i:67818554 original size:6 final size:6
Alignment explanation
Indices: 67818512--67818550 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
67818502 CCCAATACCC
*
67818512 AAAACA AAAACA AAAACA AAAACA AAAA-A AAAAGA AAAA
1 AAAACA AAAACA AAAACA AAAACA AAAACA AAAACA AAAA
67818551 GAAACCCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.87, C:0.10, G:0.03, T:0.00
Consensus pattern (6 bp):
AAAACA
Found at i:67818846 original size:29 final size:25
Alignment explanation
Indices: 67818779--67818861 Score: 112
Period size: 25 Copynumber: 3.2 Consensus size: 25
67818769 TATTTTGGAG
67818779 AGAAGAGATTTTTTTTTGAGATTCA
1 AGAAGAGATTTTTTTTTGAGATTCA
67818804 AGAAGAGATTTTTTTTTGAGATTCA
1 AGAAGAGATTTTTTTTTGAGATTCA
* *
67818829 AGAGGGGAATTTTCTTTTTTTGAGATTCA
1 AGAAGAG-A--TT-TTTTTTTGAGATTCA
67818858 AGAA
1 AGAA
67818862 TAAAAAATCA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
25 30 0.59
26 1 0.02
28 2 0.04
29 18 0.35
ACGTcount: A:0.31, C:0.05, G:0.22, T:0.42
Consensus pattern (25 bp):
AGAAGAGATTTTTTTTTGAGATTCA
Found at i:67819590 original size:16 final size:15
Alignment explanation
Indices: 67819559--67819601 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
67819549 CCTTCATTCC
*
67819559 ATTATTATTATTACT
1 ATTATTATTTTTACT
67819574 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
67819590 ATCATTATTTTT
1 ATTATTATTTTT
67819602 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:67819726 original size:16 final size:16
Alignment explanation
Indices: 67819705--67819736 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
67819695 CTATTGTTAC
67819705 TGTTATTATCATCACT
1 TGTTATTATCATCACT
*
67819721 TGTTATTCTCATCACT
1 TGTTATTATCATCACT
67819737 ATTATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (16 bp):
TGTTATTATCATCACT
Found at i:67819744 original size:3 final size:3
Alignment explanation
Indices: 67819736--67819846 Score: 50
Period size: 3 Copynumber: 36.7 Consensus size: 3
67819726 TTCTCATCAC
* * * *
67819736 TAT TAT TAT AATT TAT CAT TGT TACT TAT TAT T-T TAC TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
67819782 CTAA TA- TAT CAT CAT TAT CAT TAT T-T TCAT TAT AACT TAA TA- GAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
67819827 TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA
67819847 GCACTACTTT
Statistics
Matches: 81, Mismatches: 18, Indels: 18
0.69 0.15 0.15
Matches are distributed among these distances:
2 7 0.09
3 63 0.78
4 11 0.14
ACGTcount: A:0.34, C:0.08, G:0.02, T:0.56
Consensus pattern (3 bp):
TAT
Found at i:67819890 original size:12 final size:13
Alignment explanation
Indices: 67819855--67819892 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
67819845 TAGCACTACT
67819855 TTTATTACTATTA
1 TTTATTACTATTA
*
67819868 TTTAATA-TATTA
1 TTTATTACTATTA
67819880 TTT-TTACTATTA
1 TTTATTACTATTA
67819892 T
1 T
67819893 CGTCATATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 2 0.09
12 14 0.64
13 6 0.27
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTATTACTATTA
Found at i:67819949 original size:23 final size:23
Alignment explanation
Indices: 67819923--67819988 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 23
67819913 ACTATTATAT
67819923 TATTA-TGTTATTATATCTTTTAC
1 TATTATTGTTATTATAT-TTTTAC
* * * *
67819946 TATTATTATTGTTGTATTTTTTC
1 TATTATTGTTATTATATTTTTAC
67819969 TATTATTGTTATTATATTTT
1 TATTATTGTTATTATATTTT
67819989 CCTTTATTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
23 27 0.77
24 8 0.23
ACGTcount: A:0.23, C:0.05, G:0.06, T:0.67
Consensus pattern (23 bp):
TATTATTGTTATTATATTTTTAC
Found at i:67819974 original size:20 final size:20
Alignment explanation
Indices: 67819949--67820005 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
67819939 CTTTTACTAT
*
67819949 TATTATTGTTGTATTTTTTC
1 TATTATTGTTGTATTTTTCC
*
67819969 TATTATTGTTATTATATTTTCC
1 TATTATTGTT-GTAT-TTTTCC
*
67819991 T-TTATTTTTGTATTT
1 TATTATTGTTGTATTT
67820006 ACTTTACGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
19 2 0.06
20 13 0.42
21 10 0.32
22 6 0.19
ACGTcount: A:0.18, C:0.05, G:0.07, T:0.70
Consensus pattern (20 bp):
TATTATTGTTGTATTTTTCC
Found at i:67824787 original size:49 final size:50
Alignment explanation
Indices: 67824721--67824946 Score: 240
Period size: 49 Copynumber: 4.6 Consensus size: 50
67824711 TTTTTAAGAT
* *
67824721 ATTAGCCAAAAAGGTTTCCTAGATAATGCGCCACAGAGGCTTTTC-AAAG
1 ATTAGCCACAAAGGTTTCCCAGATAATGCGCCACAGAGGCTTTTCAAAAG
* * * * * * *
67824770 ATTATCTATAAATGTTTCCCAGATAATACACCACAGAGTCTTTTCAAAAG
1 ATTAGCCACAAAGGTTTCCCAGATAATGCGCCACAGAGGCTTTTCAAAAG
* * * * *
67824820 ATTAACCACAAAGGCTTCCCAGATAATGCGTCATAGAGGCTTTTC-AAAT
1 ATTAGCCACAAAGGTTTCCCAGATAATGCGCCACAGAGGCTTTTCAAAAG
* * ** * * *
67824869 ATTAGCCACATAGGCTTCAAAAATAATGCGTCACAGAGGGTTTTCAAAAG
1 ATTAGCCACAAAGGTTTCCCAGATAATGCGCCACAGAGGCTTTTCAAAAG
*
67824919 ATTAGCCACAAAGGTTTCCTAGATAATG
1 ATTAGCCACAAAGGTTTCCCAGATAATG
67824947 TTGTGTTTGA
Statistics
Matches: 143, Mismatches: 32, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
49 78 0.55
50 65 0.45
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (50 bp):
ATTAGCCACAAAGGTTTCCCAGATAATGCGCCACAGAGGCTTTTCAAAAG
Found at i:67832785 original size:26 final size:26
Alignment explanation
Indices: 67832737--67832787 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
67832727 AAATCAAATA
* *
67832737 GTTTAAAATAAATAATATATAAAAGG
1 GTTTAAAATAAACAACATATAAAAGG
* *
67832763 GTTTAAGATAAACAACATGTAAAAG
1 GTTTAAAATAAACAACATATAAAAG
67832788 AGAAATTTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.55, C:0.04, G:0.14, T:0.27
Consensus pattern (26 bp):
GTTTAAAATAAACAACATATAAAAGG
Found at i:67833155 original size:28 final size:28
Alignment explanation
Indices: 67833092--67833160 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 28
67833082 AACTTACAAC
67833092 AAATAATTTAAAAAAATTAAATATATATA
1 AAAT-ATTTAAAAAAATTAAATATATATA
*
67833121 TAATATTTAAAACAAA-T-AATATATATA
1 AAATATTTAAAA-AAATTAAATATATATA
*
67833148 AAACTATTCAAAA
1 AAA-TATTTAAAA
67833161 TAAGTGACAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 12 0.34
28 17 0.49
29 6 0.17
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (28 bp):
AAATATTTAAAAAAATTAAATATATATA
Found at i:67835680 original size:3 final size:3
Alignment explanation
Indices: 67835672--67835756 Score: 68
Period size: 3 Copynumber: 28.0 Consensus size: 3
67835662 TGTCTTTCTC
* *
67835672 ATT ATT ATT ATT ATT -CT ATT CATT AGTCT ATT -TA ATT AATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT -ATT A-T-T ATT ATT ATT -ATT ATT ATT
* * *
67835719 ATT ATT ATT ATT ATT ACT GTC A-T ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
67835757 TTCATATATG
Statistics
Matches: 65, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
2 3 0.05
3 52 0.80
4 8 0.12
5 2 0.03
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:67845678 original size:6 final size:6
Alignment explanation
Indices: 67845657--67845696 Score: 62
Period size: 6 Copynumber: 6.5 Consensus size: 6
67845647 AAATTTTTAT
*
67845657 ATAAAA CATTAAA ATAAAA ATAAAA ATAAAA ATAAAA ATA
1 ATAAAA -ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATA
67845697 TTATTTTTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (6 bp):
ATAAAA
Found at i:67846716 original size:8 final size:8
Alignment explanation
Indices: 67846698--67846728 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
67846688 AAAATTTTGT
67846698 AATAA-AA
1 AATAATAA
67846705 AATAATAA
1 AATAATAA
67846713 AATAATAA
1 AATAATAA
67846721 AATAATAA
1 AATAATAA
67846729 GAGCTAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 5 0.22
8 18 0.78
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AATAATAA
Found at i:67853916 original size:16 final size:16
Alignment explanation
Indices: 67853895--67853927 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
67853885 AGGGCATAGT
67853895 ACATCACGATGTCTTA
1 ACATCACGATGTCTTA
67853911 ACATCACGATGTCTTA
1 ACATCACGATGTCTTA
67853927 A
1 A
67853928 TTGCTCATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.30
Consensus pattern (16 bp):
ACATCACGATGTCTTA
Found at i:67855093 original size:18 final size:19
Alignment explanation
Indices: 67855055--67855094 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
67855045 AATAAAAATA
*
67855055 AAATAATAATGACAATAAT
1 AAATAAAAATGACAATAAT
*
67855074 AAATAAAAATG-CACTAAT
1 AAATAAAAATGACAATAAT
67855092 AAA
1 AAA
67855095 AACATGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (19 bp):
AAATAAAAATGACAATAAT
Found at i:67855169 original size:4 final size:4
Alignment explanation
Indices: 67855131--67855183 Score: 56
Period size: 4 Copynumber: 13.8 Consensus size: 4
67855121 TGTAAAAAAG
* * * *
67855131 TAAA TAAA GAAG T-AA TAAA TGAA TAAA TGAA TAAA TAAA T-AA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
67855177 TAAA TAA
1 TAAA TAA
67855184 TAATTTGTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
3 5 0.13
4 34 0.87
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:67855184 original size:11 final size:11
Alignment explanation
Indices: 67855152--67855186 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
67855142 GTAATAAATG
67855152 AATAAATGAATA
1 AATAAAT-AATA
67855164 AATAAATAATA
1 AATAAATAATA
67855175 AATAAATAATA
1 AATAAATAATA
67855186 A
1 A
67855187 TTTGTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 16 0.70
12 7 0.30
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (11 bp):
AATAAATAATA
Found at i:67859293 original size:20 final size:20
Alignment explanation
Indices: 67859255--67859293 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67859245 TAAGCTCGGT
*
67859255 TGAGCTCAAACGAGTTGAAA
1 TGAGCTCAAACGAGCTGAAA
*
67859275 TGAGCTCAAATGAGCTGAA
1 TGAGCTCAAACGAGCTGAA
67859294 TTAAGTTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21
Consensus pattern (20 bp):
TGAGCTCAAACGAGCTGAAA
Found at i:67860474 original size:14 final size:14
Alignment explanation
Indices: 67860451--67860493 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
67860441 ACTATTATTA
67860451 TTTATTTTTGTTTT
1 TTTATTTTTGTTTT
* * *
67860465 TTTATATTTGGTTA
1 TTTATTTTTGTTTT
67860479 TTTATTTTTGGTTTT
1 TTTATTTTT-GTTTT
67860494 GGGCTGGACT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 19 0.86
15 3 0.14
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.77
Consensus pattern (14 bp):
TTTATTTTTGTTTT
Found at i:67860684 original size:44 final size:44
Alignment explanation
Indices: 67860634--67860883 Score: 153
Period size: 44 Copynumber: 5.4 Consensus size: 44
67860624 ATTCTAACCT
* *
67860634 ACTGCAACTTCAGGGATATAAGATTTGGCGCTTCAATCTGCTCC
1 ACTGCAACTTCAGGGAAATAAGATTTGGCGCTTTAATCTGCTCC
* * * * * *
67860678 ACTGCAACTTTAGGGAGATGATATTTGTAACTTATGCTTTAATC-GATTCC
1 ACTGCAACTTCAGGGAAATAAGATTTG--GC----GCTTTAATCTG-CTCC
* **
67860728 ACTACAACTTCAGGGAAATAAGATTTGTAGCTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAAATAAGATTTGGCGCTTTAATCTGCTCC
* * * * *
67860772 ATTGCAACTTCAGGGAGATAAGGTTTGTAACTTGTAGCTTTAATCTGTTCC
1 ACTGCAACTTCAGGGAAATAAGATTTG------G-CGCTTTAATCTGCTCC
* * * *
67860823 ACTGCAACTTCAGGGAAATAAGA-TTCGCTATCTTCAATTTGCTCC
1 ACTGCAACTTCAGGGAAATAAGATTTGGC--GCTTTAATCTGCTCC
*
67860868 ACTGTAACTTCAGGGA
1 ACTGCAACTTCAGGGA
67860884 GATGAGGTTG
Statistics
Matches: 158, Mismatches: 31, Indels: 33
0.71 0.14 0.15
Matches are distributed among these distances:
44 59 0.37
45 27 0.17
46 1 0.01
49 1 0.01
50 35 0.22
51 35 0.22
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAAATAAGATTTGGCGCTTTAATCTGCTCC
Found at i:67860799 original size:94 final size:95
Alignment explanation
Indices: 67860638--67860892 Score: 343
Period size: 94 Copynumber: 2.7 Consensus size: 95
67860628 TAACCTACTG
* ** * **
67860638 CAACTTCAGGGATATAAGATTTGGCGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATGATATT
1 CAACTTCAGGGAAATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATGAGGTT
67860703 TGTAACTTAT-GCTTTAATC-GATTCCACTA
66 TGTAACTTATAGCTTTAATCTG-TTCCACTA
* * *
67860732 CAACTTCAGGGAAATAAGATTTGTAGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGGTT
1 CAACTTCAGGGAAATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATGAGGTT
* *
67860797 TGTAACTTGTAGCTTTAATCTGTTCCACTG
66 TGTAACTTATAGCTTTAATCTGTTCCACTA
* * * *
67860827 CAACTTCAGGGAAATAAGATTCGCTATCTTCAATTTGCTCCACTGTAACTTCAGGGAGATGAGGT
1 CAACTTCAGGGAAATAAGATTTG-TAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATGAGGT
67860892 T
65 T
67860893 GTAGCTTTAA
Statistics
Matches: 140, Mismatches: 18, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
94 65 0.46
95 38 0.27
96 37 0.26
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (95 bp):
CAACTTCAGGGAAATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATGAGGTT
TGTAACTTATAGCTTTAATCTGTTCCACTA
Found at i:67875321 original size:26 final size:26
Alignment explanation
Indices: 67875291--67875346 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
67875281 TGAAATGCCC
67875291 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
67875317 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
67875343 ATCA
1 ATCA
67875347 ACTTTTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:67877112 original size:26 final size:26
Alignment explanation
Indices: 67877073--67877123 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
67877063 AGGAATGCTA
67877073 TAATAATATAATTATAATAATAATAT
1 TAATAATATAATTATAATAATAATAT
*
67877099 TAATAATCAT-ATTATAGTAATAATA
1 TAATAAT-ATAATTATAATAATAATA
67877124 AATAAGTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (26 bp):
TAATAATATAATTATAATAATAATAT
Found at i:67877287 original size:18 final size:19
Alignment explanation
Indices: 67877249--67877288 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
67877239 CACACCAAAA
*
67877249 AAATAATAATGACAATAAT
1 AAATAAAAATGACAATAAT
*
67877268 AAATAAAAATG-CACTAAT
1 AAATAAAAATGACAATAAT
67877286 AAA
1 AAA
67877289 AGCATGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (19 bp):
AAATAAAAATGACAATAAT
Found at i:67877346 original size:19 final size:19
Alignment explanation
Indices: 67877319--67877370 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
67877309 TTTAAGTGTA
67877319 AAAAAATAAATAAA-GAAGT
1 AAAAAATAAATAAATGAA-T
*
67877338 AATAAATAAATAAATGAAT
1 AAAAAATAAATAAATGAAT
*
67877357 AAAAAAAAAATAAA
1 AAAAAATAAATAAA
67877371 AACTGCTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 26 0.90
20 3 0.10
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (19 bp):
AAAAAATAAATAAATGAAT
Found at i:67878786 original size:15 final size:14
Alignment explanation
Indices: 67878742--67878782 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
67878732 TTTACTATTA
67878742 TTATTTATTTTTGT
1 TTATTTATTTTTGT
*
67878756 TT-TTTATATCTTGT
1 TTATTTAT-TTTTGT
67878770 TTATTTATTTTTG
1 TTATTTATTTTTG
67878783 GTTTTGGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 13 0.57
15 5 0.22
ACGTcount: A:0.15, C:0.02, G:0.07, T:0.76
Consensus pattern (14 bp):
TTATTTATTTTTGT
Found at i:67880013 original size:29 final size:29
Alignment explanation
Indices: 67879980--67880035 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
67879970 ATAATCATAT
67879980 TTTTA-AACAATAATCTTAATTTGATAAGC
1 TTTTATAAC-ATAATCTTAATTTGATAAGC
* * *
67880009 TTTTATAACATATTTTTAATTTTATAA
1 TTTTATAACATAATCTTAATTTGATAA
67880036 ATATTTTGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 20 0.87
30 3 0.13
ACGTcount: A:0.39, C:0.07, G:0.04, T:0.50
Consensus pattern (29 bp):
TTTTATAACATAATCTTAATTTGATAAGC
Found at i:67882683 original size:24 final size:25
Alignment explanation
Indices: 67882651--67882766 Score: 79
Period size: 24 Copynumber: 4.8 Consensus size: 25
67882641 GAATATACGT
67882651 ATATTTTA-TA-ATTAT-TTACTT-
1 ATATTTTATTATATTATATTACTTC
67882672 ATATTTTATTATATTATATTACTTC
1 ATATTTTATTATATTATATTACTTC
* *
67882697 ATATTTT-TCTACTATCATATTAATAT-
1 ATATTTTAT-TA-TATTATATTACT-TC
**
67882723 ATATTTTAACATA-TATCATTACTT-
1 ATATTTTATTATATTAT-ATTACTTC
*
67882747 AT-TATTTATTATATTTTATT
1 ATAT-TTTATTATATTATATT
67882767 TTATCACATA
Statistics
Matches: 75, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
21 8 0.11
22 2 0.03
23 6 0.08
24 22 0.29
25 18 0.24
26 18 0.24
27 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.59
Consensus pattern (25 bp):
ATATTTTATTATATTATATTACTTC
Found at i:67882884 original size:28 final size:26
Alignment explanation
Indices: 67882823--67882891 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 26
67882813 TTTAACAATA
*
67882823 TATTA-TTTCATATTATTATTATCTAT
1 TATTATTTTCATA-TATTATTATCCAT
67882849 TATATATTTTCATATATTATTATTCACAT
1 TAT-TATTTTCATATATTATTA-TC-CAT
*
67882878 TATTATTTTTATAT
1 TATTATTTTCATAT
67882892 CTAATTGGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
26 3 0.08
27 10 0.27
28 19 0.51
29 5 0.14
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (26 bp):
TATTATTTTCATATATTATTATCCAT
Found at i:67895271 original size:206 final size:206
Alignment explanation
Indices: 67894950--67895459 Score: 743
Period size: 206 Copynumber: 2.5 Consensus size: 206
67894940 GGCATCTCTG
*
67894950 AGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTACTTACGATGAAGCAAATCTAAGATG
1 AGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATG
* *
67895015 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCTTCTCCATATTCGAAGGAGAGC
66 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGAAGGAGAGC
* * ** * * *
67895080 AGATACATAGCAGATCTGGCCTTCAGATATTTATACTGAAGTAGATCCAAGATGATTTGGCATCC
131 AAACACATAGCAGATCTAACCTTCAGATAATTAGACTGAAGCAGATCCAAGATGATTTGGCATCC
*
67895145 TTGTGTTTACA
196 TTGTGCTTACA
* * ** *
67895156 AGGAACAAATCGAA-ATCATAGCTGATTTAGCTTTCACTTGCTTACGCGGAAGCAAGTCTAAGAT
1 AGGAACAAATCGAAGA-CATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGAT
* * *
67895220 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAATTTTGGCGTCTCCATATTCGACGGAGGG
65 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGAAGGAGAG
* * *
67895285 CAAACACATAGCAGATCTAACCTTCAGATAATTAGACTGAAGCAGCTCCAAGATGGTTTGGTATC
130 CAAACACATAGCAGATCTAACCTTCAGATAATTAGACTGAAGCAGATCCAAGATGATTTGGCATC
67895350 CTTGTGCTTACA
195 CTTGTGCTTACA
* * * *
67895362 AGGAGCAAATCGAAGACATAGCTGATTTGGTTTTCGCGTGCTTACGTTGAAGCAAATCTAAGATG
1 AGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATG
* * *
67895427 ATTTGGAAACTCTGTATTGTCAGAAAACAAATC
66 ATTTGGCATCTCTGTATTGTCAGAGAACAAATC
67895460 GAAGAATCAG
Statistics
Matches: 269, Mismatches: 33, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
205 1 0.00
206 267 0.99
207 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (206 bp):
AGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATG
ATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGAAGGAGAGC
AAACACATAGCAGATCTAACCTTCAGATAATTAGACTGAAGCAGATCCAAGATGATTTGGCATCC
TTGTGCTTACA
Found at i:67897249 original size:24 final size:25
Alignment explanation
Indices: 67897217--67897332 Score: 79
Period size: 24 Copynumber: 4.8 Consensus size: 25
67897207 GAATATACGT
67897217 ATATTTTA-TA-ATTAT-TTACTT-
1 ATATTTTATTATATTATATTACTTC
67897238 ATATTTTATTATATTATATTACTTC
1 ATATTTTATTATATTATATTACTTC
* * *
67897263 ATATTTT-TCTACTATCATAGTAATAT-
1 ATATTTTAT-TA-TATTATATTACT-TC
**
67897289 ATATTTTAACATA-TATCATTACTT-
1 ATATTTTATTATATTAT-ATTACTTC
67897313 AT-TATTTATTATATTATATT
1 ATAT-TTTATTATATTATATT
67897333 TTATCACATA
Statistics
Matches: 74, Mismatches: 10, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
21 8 0.11
22 2 0.03
23 6 0.08
24 22 0.30
25 18 0.24
26 17 0.23
27 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.01, T:0.57
Consensus pattern (25 bp):
ATATTTTATTATATTATATTACTTC
Found at i:67897450 original size:28 final size:26
Alignment explanation
Indices: 67897389--67897457 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 26
67897379 TTTAACAATA
*
67897389 TATTA-TTTCATATTATTATTATCTAT
1 TATTATTTTCATA-TATTATTATCCAT
67897415 TATATATTTTCATATATTATTATTCACAT
1 TAT-TATTTTCATATATTATTA-TC-CAT
*
67897444 TATTATTTTTATAT
1 TATTATTTTCATAT
67897458 CTAATTTGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
26 3 0.08
27 10 0.27
28 19 0.51
29 5 0.14
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (26 bp):
TATTATTTTCATATATTATTATCCAT
Found at i:67897898 original size:20 final size:20
Alignment explanation
Indices: 67897873--67897911 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
67897863 TTTAAATATA
67897873 TGTTGAATTACATGTTTATG
1 TGTTGAATTACATGTTTATG
67897893 TGTTGAATTACATGTTTAT
1 TGTTGAATTACATGTTTAT
67897912 TTCTTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.18, T:0.51
Consensus pattern (20 bp):
TGTTGAATTACATGTTTATG
Found at i:67910053 original size:16 final size:16
Alignment explanation
Indices: 67910029--67910060 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
67910019 GGGTAGTTTA
67910029 GATAATATTTTATTTT
1 GATAATATTTTATTTT
*
67910045 GATATTATTTTATTTT
1 GATAATATTTTATTTT
67910061 TGAAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (16 bp):
GATAATATTTTATTTT
Found at i:67913722 original size:65 final size:65
Alignment explanation
Indices: 67913637--67913783 Score: 224
Period size: 65 Copynumber: 2.3 Consensus size: 65
67913627 TGCAACTACA
* * *
67913637 GCAGCTCTTTATGAGCGTCCTGCT-TATTGATTGGTTGTGATCCTACATATGTTGTGGACACAAA
1 GCAGCTCTTTATGAGCGTCCTACTATA-CGATAGGTTGTGATCCTACATATGTTGTGGACACAAA
67913701 C
65 C
* * *
67913702 GCAGCTCTTTGTGAGTGTCCTACTATACGATAGGTTGTGATCCTTCATATGTTGTGGACACAAAC
1 GCAGCTCTTTATGAGCGTCCTACTATACGATAGGTTGTGATCCTACATATGTTGTGGACACAAAC
67913767 GCAGCTCTTTATGAGCG
1 GCAGCTCTTTATGAGCG
67913784 GCCCAATATG
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
65 71 0.97
66 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (65 bp):
GCAGCTCTTTATGAGCGTCCTACTATACGATAGGTTGTGATCCTACATATGTTGTGGACACAAAC
Found at i:67921986 original size:26 final size:26
Alignment explanation
Indices: 67921957--67922008 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
67921947 CTGGTATGTT
67921957 AGTTTTTATGCTAACCTTTATGATAA
1 AGTTTTTATGCTAACCTTTATGATAA
67921983 AGTTTTTATGCTAACCTTTATGATAA
1 AGTTTTTATGCTAACCTTTATGATAA
67922009 CGAGTTAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46
Consensus pattern (26 bp):
AGTTTTTATGCTAACCTTTATGATAA
Found at i:67923560 original size:17 final size:17
Alignment explanation
Indices: 67923538--67923573 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
67923528 ATAAGTATAC
*
67923538 ATTGTCATTGCATTTTT
1 ATTGTCATTACATTTTT
67923555 ATTGTCATTACATTTTT
1 ATTGTCATTACATTTTT
67923572 AT
1 AT
67923574 GTTAGTGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.08, T:0.58
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:67923584 original size:16 final size:17
Alignment explanation
Indices: 67923538--67923584 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
67923528 ATAAGTATAC
*
67923538 ATTGTCATTGCATTTTT
1 ATTGTCAGTGCATTTTT
* *
67923555 ATTGTCATTACATTTTT
1 ATTGTCAGTGCATTTTT
*
67923572 A-TGTTAGTGCATT
1 ATTGTCAGTGCATT
67923585 GGGGCAATGC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
16 9 0.35
17 17 0.65
ACGTcount: A:0.21, C:0.11, G:0.13, T:0.55
Consensus pattern (17 bp):
ATTGTCAGTGCATTTTT
Found at i:67924123 original size:15 final size:15
Alignment explanation
Indices: 67924103--67924133 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67924093 CCTTATTCTG
67924103 AAAAAATATATAAAT
1 AAAAAATATATAAAT
67924118 AAAAAATATATAAAT
1 AAAAAATATATAAAT
67924133 A
1 A
67924134 CTTAGTATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAAAATATATAAAT
Found at i:67929855 original size:40 final size:41
Alignment explanation
Indices: 67929794--67929888 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 41
67929784 CCTTAGTGGC
** * *
67929794 ATTAGCGGCG-TTTTTCAG-AAAATGCCTCTATAAGTAGAGT
1 ATTAGCGGCGATTTTTTTGAAAAACGCCGCTATAAGT-GAGT
* *
67929834 ATTAGTGGC-ATTTTTTTGAAAAACGCCGCTATAGGTGAGT
1 ATTAGCGGCGATTTTTTTGAAAAACGCCGCTATAAGTGAGT
67929874 ATTAGCGGCGATTTT
1 ATTAGCGGCGATTTT
67929889 AAACGCGCAA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
40 26 0.58
41 19 0.42
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (41 bp):
ATTAGCGGCGATTTTTTTGAAAAACGCCGCTATAAGTGAGT
Done.