Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 205 of 343
Found at i:67930250 original size:15 final size:15
Alignment explanation
Indices: 67930229--67930267 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
67930219 AATATTTTAA
67930229 GGTTTAGGGATTATG
1 GGTTTAGGGATTATG
*
67930244 TGTTTAGGGATTATG
1 GGTTTAGGGATTATG
67930259 GGTTTAGGG
1 GGTTTAGGG
67930268 GTTGTGGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:67930336 original size:15 final size:16
Alignment explanation
Indices: 67930302--67930341 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
67930292 AGTGGGTAGG
67930302 GGTTAAGGGTTTTAAC
1 GGTTAAGGGTTTTAAC
* *
67930318 GGTTATGGG-TTTAAT
1 GGTTAAGGGTTTTAAC
67930333 GGTTAAGGG
1 GGTTAAGGG
67930342 GACATGGGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.23, C:0.03, G:0.38, T:0.38
Consensus pattern (16 bp):
GGTTAAGGGTTTTAAC
Found at i:67930546 original size:30 final size:30
Alignment explanation
Indices: 67930512--67930578 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
67930502 TTATAAGGTC
* * *
67930512 AGGGGTTATGGGTTTAAAGGGA-TAGGTTTT
1 AGGGGTTATAGGATTAAAGGGACAAGG-TTT
67930542 AGGGGTTATAGGATTAAAGGGACAAGGTTT
1 AGGGGTTATAGGATTAAAGGGACAAGGTTT
67930572 AGGGGTT
1 AGGGGTT
67930579 GTTTTTTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 30 0.91
31 3 0.09
ACGTcount: A:0.27, C:0.01, G:0.40, T:0.31
Consensus pattern (30 bp):
AGGGGTTATAGGATTAAAGGGACAAGGTTT
Found at i:67930640 original size:27 final size:26
Alignment explanation
Indices: 67930614--67930707 Score: 127
Period size: 26 Copynumber: 3.6 Consensus size: 26
67930604 TCAAAATTCA
67930614 AAGATTTCAAA-TTTAGAATAATTTTC
1 AAGATTTCAAATTTTA-AATAATTTTC
* *
67930640 AAGAATTAAAATTTTAAATAATTTTC
1 AAGATTTCAAATTTTAAATAATTTTC
*
67930666 AAGATTTCAAATTTTAAATAATTTTT
1 AAGATTTCAAATTTTAAATAATTTTC
* *
67930692 AATATTTCAAAATTTA
1 AAGATTTCAAATTTTA
67930708 TCTAATTCTT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 56 0.93
27 4 0.07
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (26 bp):
AAGATTTCAAATTTTAAATAATTTTC
Found at i:67931361 original size:13 final size:13
Alignment explanation
Indices: 67931343--67931376 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
67931333 ACATTAGGTC
67931343 TTTTCCCCTAAAA
1 TTTTCCCCTAAAA
*
67931356 TTTTCCCTTAAAA
1 TTTTCCCCTAAAA
67931369 TTTTCCCC
1 TTTTCCCC
67931377 CTAACCCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTTCCCCTAAAA
Found at i:67931477 original size:27 final size:28
Alignment explanation
Indices: 67931432--67931487 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
67931422 TCGCTGGACC
**
67931432 CGACCATCTGTTGCATCACCATCG-ACT
1 CGACCATCTACTGCATCACCATCGTACT
* *
67931459 CGACCATCTACTGCGTCACCGTCGTACT
1 CGACCATCTACTGCATCACCATCGTACT
67931487 C
1 C
67931488 ATTTGCTGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.20, C:0.39, G:0.16, T:0.25
Consensus pattern (28 bp):
CGACCATCTACTGCATCACCATCGTACT
Found at i:67933058 original size:67 final size:67
Alignment explanation
Indices: 67932950--67933087 Score: 267
Period size: 67 Copynumber: 2.1 Consensus size: 67
67932940 CTCAATTTAT
67932950 AATGGCAAACCACATAGACAACTAAGATTAGCCATTGGAGTAGCAACTAGCATGCTTTACATCAT
1 AATGGCAAACCACATAGACAACTAAGATTAGCCATTGGAGTAGCAACTAGCATGCTTTACATCAT
67933015 AA
66 AA
*
67933017 AATGGCAAACCACATAGACATCTAAGATTAGCCATTGGAGTAGCAACTAGCATGCTTTACATCAT
1 AATGGCAAACCACATAGACAACTAAGATTAGCCATTGGAGTAGCAACTAGCATGCTTTACATCAT
67933082 AA
66 AA
67933084 AATG
1 AATG
67933088 CAGGTGTATG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 70 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (67 bp):
AATGGCAAACCACATAGACAACTAAGATTAGCCATTGGAGTAGCAACTAGCATGCTTTACATCAT
AA
Found at i:67933812 original size:29 final size:29
Alignment explanation
Indices: 67933780--67933845 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
67933770 TAATTTGGAT
67933780 TAATTTATT-TAAATATTATTAAATTAATA
1 TAATTT-TTATAAATATTATTAAATTAATA
* *
67933809 TAATTTTTATAAATATTATTTAATTAAAA
1 TAATTTTTATAAATATTATTAAATTAATA
*
67933838 TATTTTTT
1 TAATTTTT
67933846 TTCCATCTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 2 0.06
29 31 0.94
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (29 bp):
TAATTTTTATAAATATTATTAAATTAATA
Found at i:67933836 original size:15 final size:15
Alignment explanation
Indices: 67933782--67933841 Score: 54
Period size: 16 Copynumber: 4.0 Consensus size: 15
67933772 ATTTGGATTA
*
67933782 ATTTATTTAAATATT
1 ATTTAATTAAATATT
*
67933797 ATTAAATTAATATAATT
1 ATTTAATTAA-AT-ATT
67933814 -TTT-A-TAAATATT
1 ATTTAATTAAATATT
67933826 ATTTAATTAAAATATT
1 ATTTAATT-AAATATT
67933842 TTTTTTCCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
12 3 0.08
13 5 0.14
14 4 0.11
15 10 0.28
16 11 0.31
17 3 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTTAATTAAATATT
Found at i:67934132 original size:9 final size:9
Alignment explanation
Indices: 67934115--67934246 Score: 174
Period size: 9 Copynumber: 14.7 Consensus size: 9
67934105 TATATACTTG
67934115 AACTTACAT
1 AACTTACAT
*
67934124 AACTAACAT
1 AACTTACAT
*
67934133 AAGTTACAT
1 AACTTACAT
*
67934142 AACTTATAT
1 AACTTACAT
67934151 AACTTACAT
1 AACTTACAT
67934160 AACTTACAT
1 AACTTACAT
* *
67934169 AGCTCACAT
1 AACTTACAT
* *
67934178 AACTCACGT
1 AACTTACAT
* *
67934187 AACTCATAT
1 AACTTACAT
67934196 AACTTACAT
1 AACTTACAT
67934205 AACTTACAT
1 AACTTACAT
*
67934214 AACTCACAT
1 AACTTACAT
67934223 AACTTACAT
1 AACTTACAT
67934232 AACTTACAT
1 AACTTACAT
67934241 AACTTA
1 AACTTA
67934247 TTTATACTTA
Statistics
Matches: 107, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 107 1.00
ACGTcount: A:0.44, C:0.23, G:0.02, T:0.31
Consensus pattern (9 bp):
AACTTACAT
Found at i:67939276 original size:13 final size:14
Alignment explanation
Indices: 67939260--67939288 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67939250 TTATAAATAT
67939260 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
67939273 TTATAATGGTTTAA
1 TTATAATGGTTTAA
67939287 TT
1 TT
67939289 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:67939749 original size:21 final size:21
Alignment explanation
Indices: 67939709--67939764 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
67939699 GTAGAGAAGA
*
67939709 AGGCAGCGGCAGCAACGAGGT
1 AGGCAGCGGCAGCAACGAGGG
*
67939730 AGGCAGCGGTAGCAGA-GAGGG
1 AGGCAGCGGCAGCA-ACGAGGG
**
67939751 AGGCAAAGGCAGCA
1 AGGCAGCGGCAGCA
67939765 GCGATGGCAG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.32, C:0.20, G:0.45, T:0.04
Consensus pattern (21 bp):
AGGCAGCGGCAGCAACGAGGG
Found at i:67940062 original size:31 final size:31
Alignment explanation
Indices: 67940016--67940074 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
67940006 CAGTTGTATT
67940016 TTTTAAGCTAAATTTGCTATTTTTGGTTTCA
1 TTTTAAGCTAAATTTGCTATTTTTGGTTTCA
* * *
67940047 TTTTATGCTATATTTGCTGTTTTTGGTT
1 TTTTAAGCTAAATTTGCTATTTTTGGTT
67940075 GGATTTAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.17, C:0.08, G:0.15, T:0.59
Consensus pattern (31 bp):
TTTTAAGCTAAATTTGCTATTTTTGGTTTCA
Found at i:67944407 original size:25 final size:25
Alignment explanation
Indices: 67944379--67944445 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
67944369 TTTCTGTCAT
** *
67944379 GTATGCTCATACGAGCTACGAGTCG
1 GTATGCTTTTACGAGCTACGAATCG
*
67944404 GTATGCTTTTACGAGCTATGAATCG
1 GTATGCTTTTACGAGCTACGAATCG
67944429 GTATGCTTTTACGAGCT
1 GTATGCTTTTACGAGCT
67944446 GTAATCGGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (25 bp):
GTATGCTTTTACGAGCTACGAATCG
Found at i:67949826 original size:17 final size:16
Alignment explanation
Indices: 67949787--67949828 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
67949777 TATATTTCAT
*
67949787 TATATT-TTATTTATA
1 TATATTATTACTTATA
*
67949802 TATGTTATTACTTATCA
1 TATATTATTACTTAT-A
67949819 TATATTATTA
1 TATATTATTA
67949829 TATATTATTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 5 0.23
16 7 0.32
17 10 0.45
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (16 bp):
TATATTATTACTTATA
Found at i:67949831 original size:10 final size:10
Alignment explanation
Indices: 67949770--67949837 Score: 52
Period size: 10 Copynumber: 6.7 Consensus size: 10
67949760 ATATTTATTG
67949770 TATTATT-TA
1 TATTATTATA
67949779 TATTTCATTATA
1 TA-TT-ATTATA
*
67949791 TTTTATT-TA
1 TATTATTATA
*
67949800 TATATGTTAT-
1 TAT-TATTATA
*
67949810 TACTTATCATA
1 TA-TTATTATA
67949821 TATTATTATA
1 TATTATTATA
67949831 TATTATT
1 TATTATT
67949838 CCCTATATTA
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
9 6 0.13
10 28 0.61
11 9 0.20
12 3 0.07
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (10 bp):
TATTATTATA
Found at i:67955323 original size:21 final size:21
Alignment explanation
Indices: 67955297--67955338 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
67955287 AAGATGGGGA
67955297 TAGTGAAGTTCGACAATACCC
1 TAGTGAAGTTCGACAATACCC
67955318 TAGTGAAGTTCGACAATACCC
1 TAGTGAAGTTCGACAATACCC
67955339 CTAATACTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (21 bp):
TAGTGAAGTTCGACAATACCC
Found at i:67962124 original size:44 final size:40
Alignment explanation
Indices: 67962074--67962165 Score: 103
Period size: 40 Copynumber: 2.2 Consensus size: 40
67962064 AAGATAGGAC
* *
67962074 ATTGTCAGATAGCAGATCAAAAATAGCAGATTTGGTATCTCTGT
1 ATTGTCAGAGAGCAGATCAAAAAT----GATTTGGCATCTCTGT
* * *
67962118 ATTGTCAAAGAGCAGATCGAAGATGATTTGGCATCTCTGT
1 ATTGTCAGAGAGCAGATCAAAAATGATTTGGCATCTCTGT
67962158 ATTGTCAG
1 ATTGTCAG
67962166 GGAACAAAGC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
40 22 0.52
44 20 0.48
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.32
Consensus pattern (40 bp):
ATTGTCAGAGAGCAGATCAAAAATGATTTGGCATCTCTGT
Found at i:67962179 original size:40 final size:40
Alignment explanation
Indices: 67962102--67962180 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
67962092 AAAAATAGCA
* * * *
67962102 GATTTGGTATCTCTGTATTGTCAAAGAGCAGATCGAAGAT
1 GATTTGGCATCTCTGTATTGTCAAAGAACAAAGCGAAGAT
**
67962142 GATTTGGCATCTCTGTATTGTCAGGGAACAAAGCGAAGA
1 GATTTGGCATCTCTGTATTGTCAAAGAACAAAGCGAAGA
67962181 AGCAAATTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (40 bp):
GATTTGGCATCTCTGTATTGTCAAAGAACAAAGCGAAGAT
Found at i:67963955 original size:17 final size:18
Alignment explanation
Indices: 67963908--67964000 Score: 56
Period size: 17 Copynumber: 5.4 Consensus size: 18
67963898 TATAAAATAG
67963908 TATATATTATT-T-TTA-
1 TATATATTATTATATTAT
*
67963923 TATATTATCCATTATATTAT
1 TATA-TAT-TATTATATTAT
**
67963943 T-TATATTATTATACAAT
1 TATATATTATTATATTAT
* *
67963960 T-TAT-TTATAAATTTTAT
1 TATATATTAT-TATATTAT
*
67963977 TATATATTA-TATGTTAT
1 TATATATTATTATATTAT
67963994 TATATAT
1 TATATAT
67964001 ACTATTCCTA
Statistics
Matches: 60, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
15 4 0.07
16 7 0.12
17 33 0.55
18 7 0.12
19 8 0.13
20 1 0.02
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (18 bp):
TATATATTATTATATTAT
Found at i:67964196 original size:17 final size:16
Alignment explanation
Indices: 67964157--67964198 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
67964147 TATATTTCAT
*
67964157 TATATT-TTATTTATA
1 TATATTATTACTTATA
*
67964172 TATTTTATTACTTATCA
1 TATATTATTACTTAT-A
67964189 TATATTATTA
1 TATATTATTA
67964199 TATATTATTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 5 0.23
16 7 0.32
17 10 0.45
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (16 bp):
TATATTATTACTTATA
Found at i:67964201 original size:10 final size:10
Alignment explanation
Indices: 67964140--67964207 Score: 61
Period size: 10 Copynumber: 6.7 Consensus size: 10
67964130 ATATTTATTG
67964140 TATTATT-TA
1 TATTATTATA
67964149 TATTTCATTATA
1 TA-TT-ATTATA
*
67964161 TTTTATTTATA
1 TATTA-TTATA
67964172 TATT-TTAT-
1 TATTATTATA
*
67964180 TACTTATCATA
1 TA-TTATTATA
67964191 TATTATTATA
1 TATTATTATA
67964201 TATTATT
1 TATTATT
67964208 CCCTATATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
8 2 0.04
9 8 0.17
10 20 0.42
11 15 0.31
12 3 0.06
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.63
Consensus pattern (10 bp):
TATTATTATA
Found at i:67964250 original size:8 final size:8
Alignment explanation
Indices: 67964237--67964265 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
67964227 TATTATATAT
67964237 ATTATTTC
1 ATTATTTC
67964245 ATTATTTC
1 ATTATTTC
67964253 ATTATTT-
1 ATTATTTC
67964260 ATTATT
1 ATTATT
67964266 ATATAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.66
Consensus pattern (8 bp):
ATTATTTC
Found at i:67964341 original size:203 final size:200
Alignment explanation
Indices: 67963937--67964341 Score: 418
Period size: 203 Copynumber: 2.0 Consensus size: 200
67963927 TTATCCATTA
* *
67963937 TATTATTTATATTATTATACAATTTATTTATAAATTTTATTATATATTATATGTTATTATATATA
1 TATTATTTATATTATTATA-AATTTATTTATAAATTTTATTATATATCATATATTATTATATATA
* * *
67964002 CTATTCCTAGTATTTTTATTTTATTATAAATTATGTATTATTTTATTATTCATTAATTGTCTAAA
65 -TATTCCTAGTATTTTTATTTTATTATAAATTATGTATTATTTCATTATTCATTAATTATATAAA
* * * * *
67964067 ATTTTAAATATTTTAAAAATTATTATTAAATAATAGTATATATGTACTATCCTTATTTATATGAT
129 ATATTAAATATTTT-AAAATTATTATTAAATAATAGTATATATGTACTATCATTATATATATAAA
67964132 ATTTATTG
193 ATTTATTG
* *
67964140 TATTATTTATATTTCATTAT-ATTTTATTTATATATTTTATTACT-TATCATATATTATTATATA
1 TATTATTTATA-TT-ATTATAAATTTATTTATAAATTTTATTA-TATATCATATATTATTATATA
* * *
67964203 T-TATTCCCTA-TATTATCTTCCTTTTATTATATATATTATTTCATTATTTCATTATTTATT-AT
63 TATATT-CCTAGTATT-T-TT-ATTTTATTATA-A-ATTATGT-ATTATTTCATTATTCATTAAT
*
67964265 TATATAAAA-ATTAAA-ATTTT-AAATTATTA-TAAATTAATA-TATATATTGTTATTAT-ATGT
121 TATATAAAATATTAAATATTTTAAAATTATTATTAAA-TAATAGTATATA-TG-TACTATCAT-T
* *
67964324 CTATATTTAAAATTTATT
182 ATATATATAAAATTTATT
67964342 ACAAGATTTT
Statistics
Matches: 170, Mismatches: 18, Indels: 28
0.79 0.08 0.13
Matches are distributed among these distances:
201 18 0.11
202 22 0.13
203 70 0.41
204 18 0.11
205 11 0.06
206 15 0.09
207 16 0.09
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.56
Consensus pattern (200 bp):
TATTATTTATATTATTATAAATTTATTTATAAATTTTATTATATATCATATATTATTATATATAT
ATTCCTAGTATTTTTATTTTATTATAAATTATGTATTATTTCATTATTCATTAATTATATAAAAT
ATTAAATATTTTAAAATTATTATTAAATAATAGTATATATGTACTATCATTATATATATAAAATT
TATTG
Found at i:67964481 original size:19 final size:20
Alignment explanation
Indices: 67964450--67964488 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
67964440 TTGCTCAATA
67964450 TATTTCA-TTTTTTATTTTT
1 TATTTCATTTTTTTATTTTT
67964469 TATTT-ATTGTTTTTATTTTT
1 TATTTCATT-TTTTTATTTTT
67964489 ATCCTTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.06
19 6 0.33
20 11 0.61
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (20 bp):
TATTTCATTTTTTTATTTTT
Found at i:67970451 original size:12 final size:11
Alignment explanation
Indices: 67970400--67970495 Score: 72
Period size: 11 Copynumber: 8.8 Consensus size: 11
67970390 ATATATAGTG
*
67970400 TATAACATAATT
1 TATAA-ATAATA
* *
67970412 TACAAATAAAA
1 TATAAATAATA
*
67970423 TATATA-AATA
1 TATAAATAATA
*
67970433 TATAAATCATA
1 TATAAATAATA
67970444 TAATAAATAATA
1 T-ATAAATAATA
67970456 TATAAAT-ATA
1 TATAAATAATA
*
67970466 TAT-AATAAAA
1 TATAAATAATA
* *
67970476 TGTATATAATA
1 TATAAATAATA
*
67970487 TATATATAA
1 TATAAATAA
67970496 AAGAAAGAAA
Statistics
Matches: 66, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
9 3 0.05
10 18 0.27
11 31 0.47
12 14 0.21
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (11 bp):
TATAAATAATA
Found at i:67970459 original size:23 final size:24
Alignment explanation
Indices: 67970429--67970474 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
67970419 AAAATATATA
67970429 AATATATAAAT-CATATAATAAAT
1 AATATATAAATACATATAATAAAT
*
67970452 AATATATAAATATATATAATAAA
1 AATATATAAATACATATAATAAA
67970475 ATGTATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
AATATATAAATACATATAATAAAT
Found at i:67970485 original size:31 final size:31
Alignment explanation
Indices: 67970421--67970496 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 31
67970411 TTACAAATAA
* *
67970421 AATATATAAATATATAAATCATATAATAAAT
1 AATATATAAATATATAAATAAAATAATAAAT
*
67970452 AATATATAAATATATATAATAAAATGTATATAAT
1 AATATATAAATATATA-AATAAAAT-AATA-AAT
67970486 ATATATATAAA
1 A-ATATATAAA
67970497 AGAAAGAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
31 16 0.42
32 6 0.16
33 3 0.08
34 4 0.11
35 9 0.24
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (31 bp):
AATATATAAATATATAAATAAAATAATAAAT
Found at i:67970487 original size:29 final size:28
Alignment explanation
Indices: 67970416--67970494 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 28
67970406 ATAATTTACA
67970416 AATAAAA-TATATAAATATATAA-ATCATAT
1 AATAAAATTATAT-AATATA-AATAT-ATAT
67970445 AAT-AAA-TA-AT-ATATAAATATATAT
1 AATAAAATTATATAATATAAATATATAT
*
67970469 AATAAAATGTATATAATATATATATA
1 AATAAAAT-TATATAATATAAATATA
67970495 AAAGAAAGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
24 9 0.21
25 10 0.23
27 4 0.09
28 7 0.16
29 13 0.30
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (28 bp):
AATAAAATTATATAATATAAATATATAT
Found at i:67970490 original size:23 final size:23
Alignment explanation
Indices: 67970429--67970497 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
67970419 AAAATATATA
67970429 AATATATAAATCATATAAT-AAAT
1 AATATATAAAT-ATATAATAAAAT
67970452 AATATATAAATATAT-ATAATAA-
1 AATATATAAATATATAATAA-AAT
*
67970474 AATGTATATAATATATATATAAAA
1 AATATATA-AATATATA-ATAAAA
67970498 GAAAGAAAGA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
21 2 0.05
22 12 0.30
23 20 0.50
24 2 0.05
25 4 0.10
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (23 bp):
AATATATAAATATATAATAAAAT
Found at i:67970539 original size:17 final size:17
Alignment explanation
Indices: 67970519--67970571 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
67970509 ATTATAATGA
67970519 ATAATATATAATAAAAT
1 ATAATATATAATAAAAT
*
67970536 ATAATATGTAATAAAA-
1 ATAATATATAATAAAAT
* *
67970552 AT-ATGTA-GATAAAAT
1 ATAATATATAATAAAAT
67970567 ATAAT
1 ATAAT
67970572 GAAATATAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 6 0.20
15 5 0.17
16 4 0.13
17 15 0.50
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (17 bp):
ATAATATATAATAAAAT
Found at i:67970657 original size:17 final size:15
Alignment explanation
Indices: 67970630--67970674 Score: 63
Period size: 16 Copynumber: 2.9 Consensus size: 15
67970620 TATTTTACAT
67970630 ATAAAAATATAGTAGA
1 ATAAAAATATA-TAGA
*
67970646 ATAAATAATATATATA
1 ATAAA-AATATATAGA
67970662 ATAAAAATATATA
1 ATAAAAATATATA
67970675 ACATATAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 8 0.30
16 13 0.48
17 6 0.22
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (15 bp):
ATAAAAATATATAGA
Found at i:67970660 original size:29 final size:28
Alignment explanation
Indices: 67970628--67970715 Score: 86
Period size: 29 Copynumber: 3.0 Consensus size: 28
67970618 AGTATTTTAC
67970628 ATATAAAAATATAGTAGAATAAATAATAT
1 ATATAAAAATATA-TAGAATAAATAATAT
* * * *
67970657 ATATAATAAAAATATATAACATATAATAT
1 ATATAA-AAATATATAGAATAAATAATAT
* * *
67970686 AAATATAAATATAACAGAATAAATAATAT
1 ATATAAAAATAT-ATAGAATAAATAATAT
67970715 A
1 A
67970716 CAAAACAAAA
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
28 5 0.11
29 35 0.76
30 6 0.13
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (28 bp):
ATATAAAAATATATAGAATAAATAATAT
Found at i:67970675 original size:22 final size:22
Alignment explanation
Indices: 67970645--67970698 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 22
67970635 AATATAGTAG
*
67970645 AATAAATAATATATATAATAAA
1 AATATATAATATATATAATAAA
* *
67970667 AATATAT-A-ACATATAATATA
1 AATATATAATATATATAATAAA
67970687 AATATA-AATATA
1 AATATATAATATA
67970699 ACAGAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
20 17 0.65
21 3 0.12
22 6 0.23
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AATATATAATATATATAATAAA
Found at i:67970687 original size:12 final size:13
Alignment explanation
Indices: 67970670--67970701 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
67970660 TAATAAAAAT
67970670 ATATAACATAT-A
1 ATATAACATATAA
67970682 ATATAA-ATATAA
1 ATATAACATATAA
67970694 ATATAACA
1 ATATAACA
67970702 GAATAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.22
12 13 0.72
13 1 0.06
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (13 bp):
ATATAACATATAA
Found at i:67970697 original size:58 final size:58
Alignment explanation
Indices: 67970539--67970733 Score: 148
Period size: 61 Copynumber: 3.3 Consensus size: 58
67970529 ATAAAATATA
* * * * * **
67970539 ATATGTAATAAAAATATGT-AGATAAAATAT-AAT-GAAATATAGTATG-ATAAGGAAT
1 ATATATAATAAAAATATATAACATATAATATAAATAAAAATATAGTA-GAATAAATAAT
* * * *
67970594 ATATAGAATAATAATGATATAACA-AGTATTTTACATATAAAAATATAGTAGAATAAATAAT
1 ATATATAATAAAAAT-ATATAACATA-TAATATA-A-ATAAAAATATAGTAGAATAAATAAT
* **
67970655 ATATATAATAAAAATATATAACATATAATATAAATATAAATATAACAGAATAAATAAT
1 ATATATAATAAAAATATATAACATATAATATAAATAAAAATATAGTAGAATAAATAAT
* * *
67970713 ATACAAAACAAAAAATATATA
1 ATATATAA-TAAAAATATATA
67970734 TATGATAAAA
Statistics
Matches: 109, Mismatches: 21, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
55 12 0.11
56 4 0.04
57 5 0.05
58 28 0.26
59 13 0.12
60 16 0.15
61 31 0.28
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.30
Consensus pattern (58 bp):
ATATATAATAAAAATATATAACATATAATATAAATAAAAATATAGTAGAATAAATAAT
Found at i:67970711 original size:24 final size:23
Alignment explanation
Indices: 67970652--67970736 Score: 59
Period size: 25 Copynumber: 3.6 Consensus size: 23
67970642 TAGAATAAAT
*
67970652 AATATATATAATAAAAATATATAACA
1 AATA-ATATAAT-ATAA-ATATAACA
*
67970678 TATAATATAAATATAAATATAACA
1 AATAATAT-AATATAAATATAACA
*
67970702 GAATAA-ATAATATACA-A-AACA
1 -AATAATATAATATAAATATAACA
*
67970723 AAAAATATATATAT
1 AATAATATA-ATAT
67970737 GATAAAAATG
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
20 4 0.08
21 7 0.14
22 5 0.10
23 7 0.14
24 10 0.20
25 11 0.22
26 6 0.12
ACGTcount: A:0.65, C:0.05, G:0.01, T:0.29
Consensus pattern (23 bp):
AATAATATAATATAAATATAACA
Found at i:67972377 original size:78 final size:78
Alignment explanation
Indices: 67972265--67972891 Score: 927
Period size: 78 Copynumber: 8.0 Consensus size: 78
67972255 CGATATCTGC
* * **
67972265 TGTCTTTGATTTGCTCCCTATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
*
67972330 GTCCA-ATCTGTTA
66 GT-CAGATCTGCTA
** *
67972343 TGTCTTTAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATGTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
*
67972408 GTCCA-ATCTGTTA
66 GT-CAGATCTGCTA
* *
67972421 TGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGTTTCAATGAAG
1 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
67972486 GTCAGATCTGCTA
66 GTCAGATCTGCTA
* * *
67972499 TGTCTTCGATTTGCTCCCTGTCTAATACAGAGATGCCAAATCATCTTGGATCTACTTCAATGAAG
1 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
67972564 GTCAGATCTGCTA
66 GTCAGATCTGCTA
*
67972577 TGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
67972642 GTCAGATCTGCTA
66 GTCAGATCTGCTA
* * **
67972655 TGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
*
67972720 GTCAGATCTGCTG
66 GTCAGATCTGCTA
* * *
67972733 TGTCTTCGATCTGCTTCCCGTCTAATATAGAGACGCCAAATCATCTTGGATCTGCTTCAATGAAG
1 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
* *
67972798 GTCAGATCTACTG
66 GTCAGATCTGCTA
* * * * *
67972811 TGTCTTCAATCTGC-CTCCTGTCTAATACAAAGATGCCAAATCATCTTGGATCTACTTTAATGAA
1 TGTCTTCGATCTGCTC-CCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAA
*
67972875 GGTCTGATCTGCTA
65 GGTCAGATCTGCTA
67972889 TGT
1 TGT
67972892 TTTAGCCTGT
Statistics
Matches: 508, Mismatches: 39, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
77 2 0.00
78 506 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (78 bp):
TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
GTCAGATCTGCTA
Found at i:67973217 original size:30 final size:30
Alignment explanation
Indices: 67973181--67973241 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
67973171 TGACCCACCA
67973181 AAAATGTCTGTAAGATGATCCTCTCTTAGG
1 AAAATGTCTGTAAGATGATCCTCTCTTAGG
67973211 AAAATGTCTGTAAGATGATCCTCTCTTAGG
1 AAAATGTCTGTAAGATGATCCTCTCTTAGG
67973241 A
1 A
67973242 TCGAATAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (30 bp):
AAAATGTCTGTAAGATGATCCTCTCTTAGG
Found at i:67973875 original size:55 final size:55
Alignment explanation
Indices: 67973791--67973929 Score: 233
Period size: 55 Copynumber: 2.5 Consensus size: 55
67973781 CCTTTGGTCA
*
67973791 CAAGGCGCCCTTTGCAGGTTTTCACCTTGGCCTCTCCAATTTTTTTTCGAAAACT
1 CAAGGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCAATTTTTTTTCGAAAACT
* * * *
67973846 CAAGGCGTCCTTTGTGGGTTTTCACCTTGGCCTCTTCATTTTTTTTTCGAAAACT
1 CAAGGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCAATTTTTTTTCGAAAACT
67973901 CAAGGCGCCCTTTGCGGGTTTTCACCTTG
1 CAAGGCGCCCTTTGCGGGTTTTCACCTTG
67973930 AATTCTCCTC
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 77 1.00
ACGTcount: A:0.15, C:0.27, G:0.19, T:0.38
Consensus pattern (55 bp):
CAAGGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTCCAATTTTTTTTCGAAAACT
Found at i:67984918 original size:17 final size:15
Alignment explanation
Indices: 67984891--67984933 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
67984881 TATTTTACAT
67984891 ATAAAAATATAGTAGA
1 ATAAAAATATA-TAGA
*
67984907 ATAAATAATATATATA
1 ATAAA-AATATATAGA
67984923 ATAAAAATATA
1 ATAAAAATATA
67984934 AATATAACAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 6 0.24
16 13 0.52
17 6 0.24
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (15 bp):
ATAAAAATATATAGA
Found at i:67984922 original size:21 final size:20
Alignment explanation
Indices: 67984897--67984956 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 20
67984887 ACATATAAAA
67984897 ATATAGTAGAATAAATAATAT
1 ATATA-TAGAATAAATAATAT
67984918 ATATAATA-AA-AATATAA-AT
1 ATAT-ATAGAATAA-ATAATAT
*
67984937 ATA-ACAGAATAAATAATAT
1 ATATATAGAATAAATAATAT
67984956 A
1 A
67984957 CAAAACAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
17 2 0.06
18 6 0.18
19 12 0.36
20 6 0.18
21 6 0.18
22 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (20 bp):
ATATATAGAATAAATAATAT
Found at i:67984940 original size:17 final size:16
Alignment explanation
Indices: 67984891--67984940 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
67984881 TATTTTACAT
* *
67984891 ATAAAAATATAGTAGA
1 ATAAAAATATAATATA
67984907 ATAAATAATAT-ATATA
1 ATAAA-AATATAATATA
67984923 ATAAAAATATAAATATA
1 ATAAAAATAT-AATATA
67984940 A
1 A
67984941 CAGAATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
15 5 0.17
16 13 0.45
17 11 0.38
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (16 bp):
ATAAAAATATAATATA
Found at i:67984967 original size:38 final size:39
Alignment explanation
Indices: 67984895--67984978 Score: 107
Period size: 38 Copynumber: 2.2 Consensus size: 39
67984885 TTACATATAA
** * * *
67984895 AAATATAGTAGAATAAATAATATATATAA-TAAAAATAT
1 AAATATAACAGAATAAATAATATACAAAACAAAAAATAT
67984933 AAATATAACAGAATAAATAATATACAAAACAAAAAATAT
1 AAATATAACAGAATAAATAATATACAAAACAAAAAATAT
*
67984972 ATATATA
1 AAATATA
67984979 TGATGAAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
38 25 0.64
39 14 0.36
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (39 bp):
AAATATAACAGAATAAATAATATACAAAACAAAAAATAT
Found at i:67988564 original size:27 final size:27
Alignment explanation
Indices: 67988524--67988635 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
67988514 AGGAAGCGTC
*
67988524 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
67988551 CTGGTGGCTCTGCCACATACT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
67988578 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
67988606 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
67988632 CTGG
1 CTGG
67988636 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:67988630 original size:54 final size:53
Alignment explanation
Indices: 67988524--67988635 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 53
67988514 AGGAAGCGTC
*
67988524 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATACTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATAC-TCTGTT
* * *
67988578 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACATTA-TCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACA-TACTCTGTT
67988632 CTGG
1 CTGG
67988636 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
54 33 0.63
55 17 0.33
56 2 0.04
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATACTCTGTT
Found at i:67991926 original size:23 final size:23
Alignment explanation
Indices: 67991884--67991964 Score: 101
Period size: 23 Copynumber: 3.5 Consensus size: 23
67991874 TTCCGAGCTG
* *
67991884 AACAGTAAGCT-CTATGGAGCTGA
1 AACAGTAAGCTCCAAT-GAGCTAA
**
67991907 AATGGTAAGCTCCAATGAGCTAA
1 AACAGTAAGCTCCAATGAGCTAA
*
67991930 AACAGTAAGCTCCAATAAGCTAA
1 AACAGTAAGCTCCAATGAGCTAA
67991953 AACAGTAAGCTC
1 AACAGTAAGCTC
67991965 TTACGAGCTA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
23 47 0.94
24 3 0.06
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (23 bp):
AACAGTAAGCTCCAATGAGCTAA
Found at i:67991973 original size:23 final size:23
Alignment explanation
Indices: 67991866--67991974 Score: 78
Period size: 23 Copynumber: 4.8 Consensus size: 23
67991856 GTCATGGTCG
* * *
67991866 GTAAGCTCTTCCGAGCT-GAACA
1 GTAAGCTCCTACGAGCTAAAACA
* * **
67991888 GTAAGCT-CTATGGAGCTGAAATG
1 GTAAGCTCCTA-CGAGCTAAAACA
* *
67991911 GTAAGCTCCAATGAGCTAAAACA
1 GTAAGCTCCTACGAGCTAAAACA
* **
67991934 GTAAGCTCCAATAAGCTAAAACA
1 GTAAGCTCCTACGAGCTAAAACA
*
67991957 GTAAGCTCTTACGAGCTA
1 GTAAGCTCCTACGAGCTA
67991975 TAGTGAGTCC
Statistics
Matches: 68, Mismatches: 16, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
21 1 0.01
22 12 0.18
23 53 0.78
24 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (23 bp):
GTAAGCTCCTACGAGCTAAAACA
Found at i:67991973 original size:46 final size:46
Alignment explanation
Indices: 67991866--67991974 Score: 105
Period size: 46 Copynumber: 2.4 Consensus size: 46
67991856 GTCATGGTCG
* * * * * **
67991866 GTAAGCTCTTCCGAGCT-GAACAGTAAGCTCTATGGAGCTGAAATG
1 GTAAGCTCTTACGAGCTAAAACAGTAAGCTCAATGAAGCTAAAACA
** *
67991911 GTAAGCTCCAATGAGCTAAAACAGTAAGCTCCAAT-AAGCTAAAACA
1 GTAAGCTCTTACGAGCTAAAACAGTAAGCT-CAATGAAGCTAAAACA
67991957 GTAAGCTCTTACGAGCTA
1 GTAAGCTCTTACGAGCTA
67991975 TAGTGAGTCC
Statistics
Matches: 49, Mismatches: 13, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
45 13 0.27
46 33 0.67
47 3 0.06
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (46 bp):
GTAAGCTCTTACGAGCTAAAACAGTAAGCTCAATGAAGCTAAAACA
Found at i:67998580 original size:11 final size:11
Alignment explanation
Indices: 67998564--67998594 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
67998554 CTTACTTGAT
67998564 ATATGAAATTG
1 ATATGAAATTG
67998575 ATATGAAATTG
1 ATATGAAATTG
*
67998586 GTATGAAAT
1 ATATGAAAT
67998595 GAGTTGAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.35
Consensus pattern (11 bp):
ATATGAAATTG
Found at i:67998887 original size:43 final size:43
Alignment explanation
Indices: 67998840--67998926 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
67998830 TGGTGCTCTA
* *
67998840 TGTGTGTGCCAGTATAACTACTTTCGTATATCTGATGATGCAC
1 TGTGTGTACCAGTAAAACTACTTTCGTATATCTGATGATGCAC
* * * *
67998883 TGTGTGTACCAGTAAAATTGCTTTGGTATATCTGATGGTGCAC
1 TGTGTGTACCAGTAAAACTACTTTCGTATATCTGATGATGCAC
67998926 T
1 T
67998927 TTGTCACACT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (43 bp):
TGTGTGTACCAGTAAAACTACTTTCGTATATCTGATGATGCAC
Found at i:68000179 original size:26 final size:27
Alignment explanation
Indices: 68000149--68000216 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
68000139 GGCATTACCA
* *
68000149 TTAATGTAGAAGTCCATCACGACGATC
1 TTAATGTGGAAGTCCATCAAGACGATC
* * *
68000176 -TAATATGGAATTCTATCAAGACGATC
1 TTAATGTGGAAGTCCATCAAGACGATC
68000202 TTAACTGTGGAAGTC
1 TTAA-TGTGGAAGTC
68000217 TGCTAGAACT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
26 21 0.66
27 3 0.09
28 8 0.25
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (27 bp):
TTAATGTGGAAGTCCATCAAGACGATC
Found at i:68002737 original size:6 final size:6
Alignment explanation
Indices: 68002721--68002754 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
68002711 TAGGTTTCCA
* *
68002721 AAAATG GAAATG AAAATG AAAATT AAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAA
68002755 CTTGCAATCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.68, C:0.00, G:0.15, T:0.18
Consensus pattern (6 bp):
AAAATG
Found at i:68003333 original size:27 final size:28
Alignment explanation
Indices: 68003302--68003376 Score: 82
Period size: 33 Copynumber: 2.6 Consensus size: 28
68003292 CACAACTTTT
68003302 GAGAGATTGTTATTCTGCCAAAAAATAGAGA
1 GAGAGATTGTTATTCTGCCAAAAAAT--A-A
68003333 GAATGAGATTGTTATTCTGCCAAAAAAT-A
1 G-A-GAGATTGTTATTCTGCCAAAAAATAA
*
68003362 GAGAGAAT-TTATTCT
1 GAGAGATTGTTATTCT
68003377 CAGCTTATAA
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
26 7 0.17
27 5 0.12
28 1 0.02
29 2 0.05
31 1 0.02
32 1 0.02
33 24 0.59
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (28 bp):
GAGAGATTGTTATTCTGCCAAAAAATAA
Found at i:68003341 original size:33 final size:33
Alignment explanation
Indices: 68003304--68003369 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
68003294 CAACTTTTGA
68003304 GAGATTGTTATTCTGCCAAAAAATAGAGAGAAT
1 GAGATTGTTATTCTGCCAAAAAATAGAGAGAAT
68003337 GAGATTGTTATTCTGCCAAAAAATAGAGAGAAT
1 GAGATTGTTATTCTGCCAAAAAATAGAGAGAAT
68003370 TTATTCTCAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.27
Consensus pattern (33 bp):
GAGATTGTTATTCTGCCAAAAAATAGAGAGAAT
Found at i:68005199 original size:80 final size:80
Alignment explanation
Indices: 68005066--68005224 Score: 255
Period size: 80 Copynumber: 2.0 Consensus size: 80
68005056 ACTACGAACA
* ** *
68005066 CTTCAATGTTGCTCCAAAATGGTTGATGAACACCCCTTTTCCAAGGGAAGAAATTGGGAAGAAAG
1 CTTCAATGTTGCTCCAAAATGGCTGATGAACACCCCTTTTCCAAGGGAAGAAATCAGCAAGAAAG
68005131 AAAGAGAATTTAGAG
66 AAAGAGAATTTAGAG
* *
68005146 CTTCAATGTTGCTCCAAAATGGCTGATGAACACCCTTTTTCCAAGGGAAGAAATCAGCAAGAGAG
1 CTTCAATGTTGCTCCAAAATGGCTGATGAACACCCCTTTTCCAAGGGAAGAAATCAGCAAGAAAG
*
68005211 CAAGAGAATTTAGA
66 AAAGAGAATTTAGA
68005225 ATGGGAAAGA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 72 1.00
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (80 bp):
CTTCAATGTTGCTCCAAAATGGCTGATGAACACCCCTTTTCCAAGGGAAGAAATCAGCAAGAAAG
AAAGAGAATTTAGAG
Found at i:68010612 original size:201 final size:200
Alignment explanation
Indices: 68010250--68010623 Score: 482
Period size: 201 Copynumber: 1.9 Consensus size: 200
68010240 TACAGCTTAC
* *
68010250 ATCTACCATAGTTACAGAATTCAATCTAATGAAAGTGAGTAGAATCATTCGAATATTCAAACTGA
1 ATCTACCATAGTTACAGAATTCAATCTAATGAAAGTGAGTAGAATCATTCGAATATCCAAACTCA
* ** *
68010315 TCCTATAGGTCCGCCAAGAATAAGTTAGCAGGCAACTGTAAGAAAGTCAGAGTATATATGACTGT
66 TCCTATAGGTCCGCCAAGAATAAGTTAGCAGGCAACTGTAAGAAAGTCAGAGTATATAGGAAAGC
* * *
68010380 CCTCCAAGTTCATGTTAGGGACAATATGAGAGTATTCCTATATACTACTAAAATGTTTGAATGGT
131 CCGCAAAGTTCATGTTAGGGACAATATGAGAGCATTCCTATATACTACTAAAATGTTTGAATGGT
68010445 TTTAT
196 TTTAT
* ** * ** * *
68010450 ATCTACCGTAGTTATGGAATTCAATCTAATGGAAGTGAGTAGAATTGTTTGCATATCCAAACCTC
1 ATCTACCATAGTTACAGAATTCAATCTAATGAAAGTGAGTAGAATCATTCGAATATCCAAA-CTC
* * * * * * * *
68010515 ATTCTATTGGTTCGCCAAGAATAAGTCTA-CTGGCAATTGTAAGGAAGTCATATTATATAGGAAA
65 ATCCTATAGGTCCGCCAAGAATAAGT-TAGCAGGCAACTGTAAGAAAGTCAGAGTATATAGGAAA
68010579 GCCCGCAAAGGTT-ATGTTAGGGACAATATGAGAGCATTCCTATAT
129 GCCCGCAAA-GTTCATGTTAGGGACAATATGAGAGCATTCCTATAT
68010624 CCTATTGGAA
Statistics
Matches: 146, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
200 52 0.36
201 89 0.61
202 5 0.03
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (200 bp):
ATCTACCATAGTTACAGAATTCAATCTAATGAAAGTGAGTAGAATCATTCGAATATCCAAACTCA
TCCTATAGGTCCGCCAAGAATAAGTTAGCAGGCAACTGTAAGAAAGTCAGAGTATATAGGAAAGC
CCGCAAAGTTCATGTTAGGGACAATATGAGAGCATTCCTATATACTACTAAAATGTTTGAATGGT
TTTAT
Found at i:68021786 original size:46 final size:45
Alignment explanation
Indices: 68021494--68021803 Score: 181
Period size: 46 Copynumber: 6.6 Consensus size: 45
68021484 TATGTGTGCT
* *
68021494 AGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGTGA-TATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCG-CCT--TGACGA--TGAGCC
* * * *
68021542 AGTGTAAGACATGTTTAGGACATGGCATCGGCATTGAAACGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATC-GCCTTG--ACGATGAGCC
* *
68021589 AGTGTAAGATATGTCTGGGACAT-GCATCCGCCTCGA-GATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCAT-CGCCTTGACGATG--AGCC
* * * * *
68021635 AGTGTAAGACATGTCTGGGGCAT-GCATTAG-TTATGA-GATGTGTC
1 AGTGTAAGACATGTCTGGGACATGGCA-TCGCCT-TGACGATGAGCC
* * *
68021679 AGTGTAAGACTATGTCTGGGACATGGCGTCGGCCTCGATTTCGAT-AGTC
1 AGTGTAAGAC-ATGTCTGGGACATGGCATC-GCCTTGA---CGATGAGCC
*
68021728 AGTGTAAGACCATGTCT-GGACATGGCATCGTCTTGACGAATGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGCCTTGACG-ATGAGCC
* * *
68021774 AGTGTAAGACCATATCTGGAACGTGGCATC
1 AGTGTAAGA-CATGTCTGGGACATGGCATC
68021804 AGCATTACAC
Statistics
Matches: 207, Mismatches: 32, Indels: 47
0.72 0.11 0.16
Matches are distributed among these distances:
43 2 0.01
44 16 0.08
45 16 0.08
46 66 0.32
47 43 0.21
48 32 0.15
49 26 0.13
50 6 0.03
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGCCTTGACGATGAGCC
Found at i:68029242 original size:189 final size:189
Alignment explanation
Indices: 68028917--68029289 Score: 613
Period size: 189 Copynumber: 2.0 Consensus size: 189
68028907 GAGTTACATT
*
68028917 ATCCAGGCCTAGACCGAGGAAAAGCAAAGCAAGTGGACTAAGCCGAGCTAGTCGACTATTTTTGT
1 ATCCAGGCCTAGACCGAGGAAAAGCAAAGCAAGTGGACTAAGCCGAGATAGTCGACTATTTTTGT
* * * *
68028982 AATCCGAGGTAAGTTGTATGTTAATAACGCAACTATATCTTTAAATGTGTATTTGAGTTGATATG
66 AATCCAAGGGAAGGTGGATGTTAATAACGCAACTATATCTTTAAATGTGTATTTGAGTTGATATG
68029047 GCATAAATTGTCTTGGTATTGGAATATGAGAATACATGTTGAGAAACTTACGTAACAAA
131 GCATAAATTGTCTTGGTATTGGAATATGAGAATACATGTTGAGAAACTTACGTAACAAA
* * *
68029106 ATCCGGGCCTAGACCGGGGAAAAGCGAAGCAAGTGGACTAAGCCGAGAT-GTCGACTATATTTTG
1 ATCCAGGCCTAGACCGAGGAAAAGCAAAGCAAGTGGACTAAGCCGAGATAGTCGACTAT-TTTTG
* * * *
68029170 TAATCTAAGGGAAGGTGGATGTTAATAATGCGACTATATCTTTAAATGTGTATTTGAGTTGATCT
65 TAATCCAAGGGAAGGTGGATGTTAATAACGCAACTATATCTTTAAATGTGTATTTGAGTTGATAT
*
68029235 GGCATAAATTGTCTTGGTTTTGGAATATGAGAATACATGTTGAGAAACTTACGTA
130 GGCATAAATTGTCTTGGTATTGGAATATGAGAATACATGTTGAGAAACTTACGTA
68029290 GTAAAGACTT
Statistics
Matches: 170, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
188 9 0.05
189 161 0.95
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (189 bp):
ATCCAGGCCTAGACCGAGGAAAAGCAAAGCAAGTGGACTAAGCCGAGATAGTCGACTATTTTTGT
AATCCAAGGGAAGGTGGATGTTAATAACGCAACTATATCTTTAAATGTGTATTTGAGTTGATATG
GCATAAATTGTCTTGGTATTGGAATATGAGAATACATGTTGAGAAACTTACGTAACAAA
Found at i:68029428 original size:46 final size:45
Alignment explanation
Indices: 68029361--68029571 Score: 201
Period size: 46 Copynumber: 4.5 Consensus size: 45
68029351 TATGTGTGCT
* * *
68029361 AGTGTAAAACATCTCTGGGACATGCATCAGCCAC-AGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAG-ATGA-AGCC
* * * *
68029407 AGTGTAAGACATGTCTGGGACATGCACCGGCCTCGTGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC--GAGA-TGAAGCC
* * * *
68029455 AGTGTAAGACATGTCTGGGACATGGCACCGG-CATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCA-CGAGATGA-AGCC
* *
68029502 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAAGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-AAGCC
*
68029548 AGTGTAAGACATGTCTGGGGCATG
1 AGTGTAAGACATGTCTGGGACATG
68029572 TCTCAATTAC
Statistics
Matches: 137, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
46 67 0.49
47 31 0.23
48 29 0.21
49 10 0.07
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAAGCC
Found at i:68029520 original size:95 final size:93
Alignment explanation
Indices: 68029400--68029571 Score: 281
Period size: 95 Copynumber: 1.8 Consensus size: 93
68029390 GCCACAGTAT
* *
68029400 GAGAGCCAGTGTAAGACATGTCTGGGACATGCACCGGCCTCGTGATATTTAAGCCAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCACCGGCCTCGAGA-A-GTAAGCCAGTGTAAGAC
68029465 ATGTCTGGGACATGGCACCGGCATTGAGAC
64 ATGTCTGGGACATGGCACCGGCATTGAGAC
* *
68029495 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAAGTAAGCCAGTGTAAGACAT
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCACCGGCCTCGAGAAGTAAGCCAGTGTAAGACAT
*
68029560 GTCTGGGGCATG
66 GTCTGGGACATG
68029572 TCTCAATTAC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 29 0.40
94 1 0.01
95 42 0.58
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.21
Consensus pattern (93 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCACCGGCCTCGAGAAGTAAGCCAGTGTAAGACAT
GTCTGGGACATGGCACCGGCATTGAGAC
Found at i:68032696 original size:46 final size:46
Alignment explanation
Indices: 68032644--68032763 Score: 213
Period size: 46 Copynumber: 2.6 Consensus size: 46
68032634 TTTGGGCATT
68032644 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
* *
68032690 CGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
*
68032736 CGAACTCGTTGAGTTGAGTTCGAGTTCA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCA
68032764 TGAGATGTAA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
Found at i:68035334 original size:30 final size:29
Alignment explanation
Indices: 68035298--68035354 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
68035288 ATAGTATCGT
*
68035298 ATCTTGGGTTTCTTTATTCTGGGTTTCTCA
1 ATCTTGGATTTCTTTATTC-GGGTTTCTCA
*
68035328 ATCTTGGATTTCTTTATTCGGTTTTCT
1 ATCTTGGATTTCTTTATTCGGGTTTCT
68035355 TGTTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.11, C:0.16, G:0.18, T:0.56
Consensus pattern (29 bp):
ATCTTGGATTTCTTTATTCGGGTTTCTCA
Found at i:68038138 original size:46 final size:46
Alignment explanation
Indices: 68038082--68038398 Score: 304
Period size: 46 Copynumber: 6.8 Consensus size: 46
68038072 GATATTTGGG
*
68038082 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * *
68038128 CATCCAAACTCGTTGAGTTGAGTCCGAGTTGACTTATGGATGAGAA
1 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * * * *
68038174 CGTCCGAACTCGTTAAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGG
1 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-A
68038221 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * * *
68038267 CGCCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAA
1 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGAA
*
68038313 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAA
1 -CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * * *
68038360 CGCCCGAGCTCTTTGAGTTGAGTCTGAGTCCACTTATGG
1 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68038399 GCAGGTTACA
Statistics
Matches: 220, Mismatches: 37, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
43 8 0.04
45 4 0.02
46 136 0.62
47 61 0.28
48 4 0.02
50 7 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:68038233 original size:47 final size:46
Alignment explanation
Indices: 68038176--68038344 Score: 202
Period size: 47 Copynumber: 3.6 Consensus size: 46
68038166 GATGAGAACG
* * *
68038176 TCCGAACTCGTTAAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA-GCA
* * *
68038223 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC--GC-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGCA
68038270 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAAGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACT-AGCA
68038316 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
68038345 ACTTATGGAT
Statistics
Matches: 104, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 4 0.04
46 28 0.27
47 54 0.52
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGCA
Found at i:68038250 original size:93 final size:93
Alignment explanation
Indices: 68038136--68038383 Score: 408
Period size: 93 Copynumber: 2.7 Consensus size: 93
68038126 AACATCCAAA
* * * *
68038136 CTCGTTGAGTTGAGTCCGAGTTGACTTATGGATGAGAACGTCCGAACTCGTTAAGTTGAGTCCAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAGCTCGTTGAGTTGAGTCCAA
*
68038201 GTTCGTGAGATGTAACTAGGCATCCGAG
66 GTTCGTGAGATGTAACTAAGCATCCGAG
* *
68038229 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGAGTCCGA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAGCTCGTTGAGTTGAGTCCAA
68038294 GTTCGTGAGATGTAACTAAGCATCCGAG
66 GTTCGTGAGATGTAACTAAGCATCCGAG
*
68038322 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-ACGAACGCCCGAGCTCTTTGAGTTGAGTC
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGA-GAACGCCCGAGCTCGTTGAGTTGAGTC
68038384 TGAGTCCACT
Statistics
Matches: 145, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
93 145 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAGCTCGTTGAGTTGAGTCCAA
GTTCGTGAGATGTAACTAAGCATCCGAG
Found at i:68038341 original size:20 final size:20
Alignment explanation
Indices: 68038270--68038341 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 20
68038260 ATGCGAACGC
68038270 CCGAGCTCGTTGAGTTGAGT
1 CCGAGCTCGTTGAGTTGAGT
* * *
68038290 CCGAGTTCGTGAGATGTAACTAAGCAT
1 CCGAGCTCGT-TGA-GT---TGAG--T
68038317 CCGAGCTCGTTGAGTTGAGT
1 CCGAGCTCGTTGAGTTGAGT
68038337 CCGAG
1 CCGAG
68038342 TTCACTTATG
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
20 15 0.38
21 2 0.05
22 5 0.13
25 5 0.13
26 2 0.05
27 10 0.26
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (20 bp):
CCGAGCTCGTTGAGTTGAGT
Found at i:68038367 original size:139 final size:135
Alignment explanation
Indices: 68038085--68038398 Score: 321
Period size: 139 Copynumber: 2.3 Consensus size: 135
68038075 ATTTGGGCAT
* *
68038085 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCAAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCAAACTCGTTGAGTTGAG
* * * *
68038150 TCCGAGTTGACTTATGGATGAGAACGTCCGAACTCGTTAAGTTGAGTCCAAGTTCGTGAGATGTA
66 TCCGAGTTGA-TGA-GGATGAGAACATCCGAACTCGTTAAGTTGAGTCCAAGTTCCT-AGATGGA
* *
68038215 ACTAGGCA
128 ACAACGCA
* * *
68038223 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGA
1 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCAAACTCGTTGAGTTGA
* * * * *
68038288 GTCCGAGTTCG-TGA-GATGTAACTAAGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT-TA
65 GTCCGAGTT-GATGAGGATG--A-GAA-CATCCGAACTCGTTAAGTTGAGTCCAAGTTC-CTAGA
68038350 TGGATACGAACGC-
124 TGGA-AC-AACGCA
* * *
68038363 CCGAGCTCTTTGAGTTGAGTCTGAGTCCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68038399 GCAGGTTACA
Statistics
Matches: 148, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
136 4 0.03
138 3 0.02
139 107 0.72
140 30 0.20
141 4 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (135 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCAAACTCGTTGAGTTGAG
TCCGAGTTGATGAGGATGAGAACATCCGAACTCGTTAAGTTGAGTCCAAGTTCCTAGATGGAACA
ACGCA
Found at i:68041367 original size:39 final size:40
Alignment explanation
Indices: 68041323--68041398 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 40
68041313 ACACACCATG
** *
68041323 TGGGGATAAAATTGACCCA-CCATCCCTACAAACCAAGTA
1 TGGGGATAAAATCAACCCATCCAACCCTACAAACCAAGTA
*
68041362 TGGGGATAAAATCAACCCATCCAACCCTACACACCAA
1 TGGGGATAAAATCAACCCATCCAACCCTACAAACCAA
68041399 ATGGTTCCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
39 17 0.53
40 15 0.47
ACGTcount: A:0.39, C:0.32, G:0.13, T:0.16
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCATCCAACCCTACAAACCAAGTA
Found at i:68042362 original size:29 final size:29
Alignment explanation
Indices: 68042328--68042384 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
68042318 TAATCAAACG
* *
68042328 ATGTTTACGAACGACAAGCAGAAACTTAA
1 ATGTTTACGAACAACAAGCAAAAACTTAA
68042357 ATGTTTACGAACAACAAGCAAAAACTTA
1 ATGTTTACGAACAACAAGCAAAAACTTA
68042385 CCAATGAGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.47, C:0.18, G:0.14, T:0.21
Consensus pattern (29 bp):
ATGTTTACGAACAACAAGCAAAAACTTAA
Found at i:68048498 original size:5 final size:6
Alignment explanation
Indices: 68048463--68048506 Score: 52
Period size: 6 Copynumber: 6.7 Consensus size: 6
68048453 GTTTAAAGAC
68048463 TTTTAT TTATTAT TTTTATGT TTTTAT TTTTAT TTTTAT CTTTT
1 TTTTAT TT-TTAT TTTTA--T TTTTAT TTTTAT TTTTAT -TTTT
68048507 CAAAACTACT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
6 18 0.53
7 10 0.29
8 6 0.18
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:68048506 original size:14 final size:13
Alignment explanation
Indices: 68048463--68048499 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
68048453 GTTTAAAGAC
*
68048463 TTTTATTTATTAT
1 TTTTATTTTTTAT
68048476 TTTTATGTTTTTAT
1 TTTTAT-TTTTTAT
68048490 TTTTATTTTT
1 TTTTATTTTT
68048500 ATCTTTTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:68048527 original size:5 final size:5
Alignment explanation
Indices: 68048517--68048550 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
68048507 CAAAACTACT
*
68048517 TTTTA TTTTA TTTTC TTTTA TTTTAA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA TTT
68048551 CATCCTTAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:68050579 original size:13 final size:13
Alignment explanation
Indices: 68050561--68050587 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
68050551 GAAGCAATCG
68050561 CACACGGGCATGT
1 CACACGGGCATGT
68050574 CACACGGGCATGT
1 CACACGGGCATGT
68050587 C
1 C
68050588 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGGCATGT
Found at i:68057387 original size:40 final size:40
Alignment explanation
Indices: 68057330--68057511 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
68057320 TATTCGAATG
*
68057330 ATATCCGGGCTATGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
68057370 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
68057410 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
68057450 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
68057490 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
68057512 TACTTGGGTT
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.11
40 113 0.87
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:68066756 original size:40 final size:39
Alignment explanation
Indices: 68066676--68066761 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 39
68066666 TAATGATTTA
** *
68066676 TCGGCTAAAATGACACTTAGTGTGCGGTTCGAAATGGCT
1 TCGGCTAAAATGACACTTAGTGTGCAATTCGAAATAGCT
* * * *
68066715 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGACACTTAGTGTGCAATTCGAAATAGCT
68066755 TCGGCTA
1 TCGGCTA
68066762 TATATATAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 10 0.26
40 29 0.74
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGACACTTAGTGTGCAATTCGAAATAGCT
Found at i:68067751 original size:26 final size:26
Alignment explanation
Indices: 68067722--68067773 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
68067712 ATTATTTTCA
68067722 TATGAACTTAATAAGAATTATAGCTT
1 TATGAACTTAATAAGAATTATAGCTT
*
68067748 TATGAACTTAATAAGCATTATAGCTT
1 TATGAACTTAATAAGAATTATAGCTT
68067774 ACTCCCCTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (26 bp):
TATGAACTTAATAAGAATTATAGCTT
Found at i:68075622 original size:16 final size:16
Alignment explanation
Indices: 68075601--68075640 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
68075591 AATGGGCATT
68075601 GTGGGCCCATGGGCTC
1 GTGGGCCCATGGGCTC
68075617 GTGGGCCCATGGGCTC
1 GTGGGCCCATGGGCTC
68075633 GTGGGCCC
1 GTGGGCCC
68075641 TACACGGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.05, C:0.33, G:0.45, T:0.17
Consensus pattern (16 bp):
GTGGGCCCATGGGCTC
Found at i:68076233 original size:34 final size:34
Alignment explanation
Indices: 68076190--68076262 Score: 112
Period size: 34 Copynumber: 2.1 Consensus size: 34
68076180 GTATGCATCT
68076190 CTGATACTG-TACTGAAATGGGGCTAAGGCCCACA
1 CTGATACTGTTACTGAAAT-GGGCTAAGGCCCACA
* *
68076224 CTGATACTGTTACTGTAGTGGGCTAAGGCCCACA
1 CTGATACTGTTACTGAAATGGGCTAAGGCCCACA
68076258 CTGAT
1 CTGAT
68076263 CTTGCCACTG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 29 0.81
35 7 0.19
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (34 bp):
CTGATACTGTTACTGAAATGGGCTAAGGCCCACA
Found at i:68076281 original size:34 final size:34
Alignment explanation
Indices: 68076209--68076287 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 34
68076199 TACTGAAATG
** *
68076209 GGGCTAAGGCCCACACTGATACTGTTACTGTAGT
1 GGGCTAAGGCCCACACTGATACTGCCACTGTAGA
68076243 GGGCTAAGGCCCACACTGAT-CTTGCCACTGATA-A
1 GGGCTAAGGCCCACACTGATAC-TGCCACTG-TAGA
*
68076277 GGGCTTAGGCC
1 GGGCTAAGGCC
68076288 AGACTGTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
33 1 0.03
34 36 0.92
35 2 0.05
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (34 bp):
GGGCTAAGGCCCACACTGATACTGCCACTGTAGA
Found at i:68078030 original size:39 final size:39
Alignment explanation
Indices: 68077985--68078161 Score: 309
Period size: 39 Copynumber: 4.5 Consensus size: 39
68077975 AACATGTTTT
68077985 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
68078024 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
68078063 TGAGTATTGTGATATATGCTTGAATGTTATATGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
68078102 TGAGTATTGTGATATATGCTTGACTGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* * *
68078141 TGTGTAATGTGATACATGCTT
1 TGAGTATTGTGATATATGCTT
68078162 AAAAGTGAAT
Statistics
Matches: 132, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 132 1.00
ACGTcount: A:0.28, C:0.04, G:0.23, T:0.46
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:68078036 original size:17 final size:17
Alignment explanation
Indices: 68078014--68078080 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 17
68078004 TTGAATGTTA
68078014 TGTGATTATATGAGTAT
1 TGTGATTATATGAGTAT
*
68078031 TGTGATATATGCTTGAATGT-T
1 TGTGAT-TAT--ATG-A-GTAT
68078052 ATGTGATTATATGAGTAT
1 -TGTGATTATATGAGTAT
68078070 TGTGA-TATATG
1 TGTGATTATATG
68078081 CTTGAATGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 15
0.71 0.03 0.26
Matches are distributed among these distances:
16 6 0.15
17 13 0.32
18 5 0.12
19 2 0.05
20 2 0.05
21 5 0.12
22 8 0.20
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.46
Consensus pattern (17 bp):
TGTGATTATATGAGTAT
Found at i:68084545 original size:28 final size:26
Alignment explanation
Indices: 68084518--68084569 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
68084508 AAATTCAAAT
68084518 ATAGAAAA-AAATAAAAGATAAATAAA
1 ATAGAAAAGAAATAAAAGA-AAATAAA
*
68084544 ATCGAAAAGGAAATAAAAGAAAATAA
1 ATAGAAAA-GAAATAAAAGAAAATAA
68084570 TTAATATACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
27 6 0.26
28 10 0.43
ACGTcount: A:0.73, C:0.02, G:0.12, T:0.13
Consensus pattern (26 bp):
ATAGAAAAGAAATAAAAGAAAATAAA
Found at i:68084990 original size:20 final size:18
Alignment explanation
Indices: 68084947--68084996 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
68084937 CATATTTAAT
*
68084947 TATTTATATTTAATAATA
1 TATTTATATTTAATAAAA
68084965 TAATTTATTATTCTAATAAAA
1 T-ATTTA-TATT-TAATAAAA
68084986 TATTTAATATT
1 TATTT-ATATT
68084997 AAATTTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 1 0.04
19 5 0.19
20 12 0.44
21 9 0.33
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
TATTTATATTTAATAAAA
Found at i:68085006 original size:30 final size:33
Alignment explanation
Indices: 68084952--68085013 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 33
68084942 TTAATTATTT
*
68084952 ATATTTAATAATATAATTTATTATTCTAATAAA
1 ATATTTAATAATATAAATTATTATTCTAATAAA
*
68084985 ATATTTAAT-AT-TAAATT-TTATTTTAATAA
1 ATATTTAATAATATAAATTATTATTCTAATAA
68085014 TAAATTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 11 0.41
31 5 0.19
32 2 0.07
33 9 0.33
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (33 bp):
ATATTTAATAATATAAATTATTATTCTAATAAA
Found at i:68085015 original size:33 final size:33
Alignment explanation
Indices: 68084952--68085017 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
68084942 TTAATTATTT
*
68084952 ATATTTAATAATATAATTTATTATTCTAATAAA
1 ATATTTAATAATATAATTTATTATTATAATAAA
*
68084985 ATATTTAATATTA-AATTTTATT-TTAATAATAAA
1 ATATTTAATAATATAA-TTTATTATT-ATAATAAA
68085018 TTTTTACAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 4 0.14
33 25 0.86
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (33 bp):
ATATTTAATAATATAATTTATTATTATAATAAA
Found at i:68085182 original size:23 final size:25
Alignment explanation
Indices: 68085139--68085184 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
68085129 AATAAATGTT
68085139 TTATAGTAAATTATGAATATTTTAA
1 TTATAGTAAATTATGAATATTTTAA
*
68085164 TTATA-TAAA-TATGAGTATTTT
1 TTATAGTAAATTATGAATATTTT
68085185 TTAAAGTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 11 0.55
24 4 0.20
25 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (25 bp):
TTATAGTAAATTATGAATATTTTAA
Found at i:68085843 original size:24 final size:24
Alignment explanation
Indices: 68085811--68085859 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
68085801 ATGATAGACA
68085811 CAACATCTTTTGAATTTGCCTATT
1 CAACATCTTTTGAATTTGCCTATT
68085835 CAACATCTTTTGAATTTGCCTATT
1 CAACATCTTTTGAATTTGCCTATT
68085859 C
1 C
68085860 GGTAAAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.22, G:0.08, T:0.45
Consensus pattern (24 bp):
CAACATCTTTTGAATTTGCCTATT
Found at i:68109922 original size:69 final size:69
Alignment explanation
Indices: 68109811--68109949 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
68109801 CAAGACTCTA
*
68109811 TCAGCCCTACCACCACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
68109876 CCTG
66 CCTG
68109880 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
68109945 CCTG
66 CCTG
68109949 T
1 T
68109950 TTTTCCTATC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (69 bp):
TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
CCTG
Found at i:68116833 original size:18 final size:18
Alignment explanation
Indices: 68116810--68116851 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
68116800 GCTTTGGTGC
*
68116810 AAGAGGAAGAGGCAGAGG
1 AAGAGGAACAGGCAGAGG
*
68116828 AAGAGGAACAGGTAGAGG
1 AAGAGGAACAGGCAGAGG
*
68116846 TAGAGG
1 AAGAGG
68116852 TGGATATAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.48, T:0.05
Consensus pattern (18 bp):
AAGAGGAACAGGCAGAGG
Found at i:68120072 original size:24 final size:24
Alignment explanation
Indices: 68120026--68120072 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
68120016 CATATTTTTT
*
68120026 AAAATTTATTTTTAATTTGTTAGA
1 AAAATTTATTTTGAATTTGTTAGA
68120050 AAAATTTATTTTGATATTT-TTAG
1 AAAATTTATTTTGA-ATTTGTTAG
68120073 TATTTTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (24 bp):
AAAATTTATTTTGAATTTGTTAGA
Found at i:68122011 original size:11 final size:13
Alignment explanation
Indices: 68121994--68122026 Score: 52
Period size: 11 Copynumber: 2.7 Consensus size: 13
68121984 TAAGATTAGT
68121994 GTTAATTAATT-A
1 GTTAATTAATTAA
68122006 -TTAATTAATTAA
1 GTTAATTAATTAA
68122018 GTTAATTAA
1 GTTAATTAA
68122027 GAGTTAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.53
12 1 0.05
13 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (13 bp):
GTTAATTAATTAA
Found at i:68122169 original size:51 final size:51
Alignment explanation
Indices: 68122114--68122218 Score: 192
Period size: 51 Copynumber: 2.1 Consensus size: 51
68122104 GGGTGGGTGA
*
68122114 GAAAGAGGGTTTGAGCTTTTAAAGTTTTAGTCCTTCAATTAATCAAGACTT
1 GAAAGAGGGTTTGAGCTTTTAAAGCTTTAGTCCTTCAATTAATCAAGACTT
*
68122165 GAAAGAGGGTTTGAGCTTTTCAAGCTTTAGTCCTTCAATTAATCAAGACTT
1 GAAAGAGGGTTTGAGCTTTTAAAGCTTTAGTCCTTCAATTAATCAAGACTT
68122216 GAA
1 GAA
68122219 TCAATTAGAG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.35
Consensus pattern (51 bp):
GAAAGAGGGTTTGAGCTTTTAAAGCTTTAGTCCTTCAATTAATCAAGACTT
Found at i:68122651 original size:15 final size:15
Alignment explanation
Indices: 68122628--68122665 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
68122618 AATAGTACTT
*
68122628 TAAGATTTTATTTAA
1 TAAGTTTTTATTTAA
68122643 TAAGTTTTTATTTAA
1 TAAGTTTTTATTTAA
68122658 TAAGTTTT
1 TAAGTTTT
68122666 ACTGAAAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (15 bp):
TAAGTTTTTATTTAA
Found at i:68124103 original size:29 final size:29
Alignment explanation
Indices: 68124068--68124156 Score: 142
Period size: 29 Copynumber: 3.1 Consensus size: 29
68124058 TCGACAATCC
*
68124068 TCAAATATGAAAAGGGATGGTTTCGACCA
1 TCAAATATGAAAAGGGATGGTTACGACCA
* *
68124097 TCAAATATGAAAAGGGATAGTGACGACCA
1 TCAAATATGAAAAGGGATGGTTACGACCA
*
68124126 TCGAATATGAAAAGGGATGGTTACGACCA
1 TCAAATATGAAAAGGGATGGTTACGACCA
68124155 TC
1 TC
68124157 GTTTAGTACA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (29 bp):
TCAAATATGAAAAGGGATGGTTACGACCA
Found at i:68125165 original size:12 final size:12
Alignment explanation
Indices: 68125148--68125173 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68125138 GTTTGTTGAT
68125148 AAAACGCCGCTA
1 AAAACGCCGCTA
68125160 AAAACGCCGCTA
1 AAAACGCCGCTA
68125172 AA
1 AA
68125174 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:68127024 original size:21 final size:21
Alignment explanation
Indices: 68126998--68127045 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
68126988 CTAGCCACAA
*
68126998 GCCCGTATGATTGAGGGACAC
1 GCCCGTATGACTGAGGGACAC
*
68127019 GCCCGTATGGCTGAGGGACAC
1 GCCCGTATGACTGAGGGACAC
68127040 GCCCGT
1 GCCCGT
68127046 TTGAGCAGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.19, C:0.29, G:0.35, T:0.17
Consensus pattern (21 bp):
GCCCGTATGACTGAGGGACAC
Found at i:68127179 original size:21 final size:21
Alignment explanation
Indices: 68127100--68127179 Score: 74
Period size: 21 Copynumber: 3.8 Consensus size: 21
68127090 GACATGACCA
* *
68127100 TGTGGCCAAGACACACATCCG
1 TGTGGCCAAGACACACGTCTG
* * *
68127121 TCTGG-TAAGGACACAC-ACTCG
1 TGTGGCCAA-GACACACGTCT-G
*
68127142 TGTGGACAAGACACACGTCTG
1 TGTGGCCAAGACACACGTCTG
68127163 TGTGGCCAAGACACACG
1 TGTGGCCAAGACACACG
68127180 CCCATGTGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
20 3 0.06
21 40 0.85
22 4 0.09
ACGTcount: A:0.29, C:0.29, G:0.26, T:0.16
Consensus pattern (21 bp):
TGTGGCCAAGACACACGTCTG
Found at i:68131554 original size:4 final size:4
Alignment explanation
Indices: 68131539--68131582 Score: 70
Period size: 4 Copynumber: 10.8 Consensus size: 4
68131529 AACAGGGGAA
*
68131539 AAAG AAAGG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAGG AAA
1 AAAG AAA-G AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
68131583 AATTAGGGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 33 0.89
5 4 0.11
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:68135594 original size:3 final size:3
Alignment explanation
Indices: 68135588--68135617 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
68135578 AAATAGATAT
68135588 TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
68135618 GGAATAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:68136864 original size:21 final size:21
Alignment explanation
Indices: 68136840--68136921 Score: 76
Period size: 21 Copynumber: 3.9 Consensus size: 21
68136830 GGCTTTGCCG
68136840 ATCAGGCA-CTATATGTGTCAT
1 ATCAGGCACCT-TATGTGTCAT
* ** *
68136861 ATCAGACACCTCGTGTGTCGT
1 ATCAGGCACCTTATGTGTCAT
*
68136882 ATCAGGCACCTTGTGTGTCAT
1 ATCAGGCACCTTATGTGTCAT
* * *
68136903 TTTAGGCACTTTATGTGTC
1 ATCAGGCACCTTATGTGTC
68136922 GTATACTACT
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
21 47 0.96
22 2 0.04
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (21 bp):
ATCAGGCACCTTATGTGTCAT
Found at i:68137783 original size:22 final size:22
Alignment explanation
Indices: 68137733--68137783 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
68137723 TATTTAAAGG
68137733 TGAA-TTGGATTGGTTGTGATT
1 TGAATTTGGATTGGTTGTGATT
***
68137754 TTTGTTTGGATTGGTCT-TGATT
1 TGAATTTGGATTGGT-TGTGATT
68137776 TGAATTTG
1 TGAATTTG
68137784 TAGGGAAGCT
Statistics
Matches: 22, Mismatches: 6, Indels: 3
0.71 0.19 0.10
Matches are distributed among these distances:
21 1 0.05
22 20 0.91
23 1 0.05
ACGTcount: A:0.16, C:0.02, G:0.29, T:0.53
Consensus pattern (22 bp):
TGAATTTGGATTGGTTGTGATT
Found at i:68141696 original size:47 final size:47
Alignment explanation
Indices: 68141589--68142064 Score: 682
Period size: 47 Copynumber: 10.1 Consensus size: 47
68141579 GAAATGATAG
68141589 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
68141638 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
68141685 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
68141732 TAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
68141779 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
68141826 TAGGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * *
68141873 TAAGGCCTAATAGCCGACGTGATGAACGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
68141920 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
68141967 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
68142014 CAAGGCCGAGTGGCCAACGTAATGGATGTGGAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
68142061 TAAG
1 TAAG
68142065 TCCCGAAAGG
Statistics
Matches: 394, Mismatches: 33, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
47 359 0.91
49 35 0.09
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:68142239 original size:37 final size:37
Alignment explanation
Indices: 68142183--68142261 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
68142173 CCGAGCTCTA
* * *
68142183 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
68142220 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
68142257 AAGAC
1 AAGAC
68142262 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:68144665 original size:21 final size:21
Alignment explanation
Indices: 68144638--68144695 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
68144628 AGAGACACGG
68144638 CCGTGTGGCAAAGACACAAAC
1 CCGTGTGGCAAAGACACAAAC
* * * **
68144659 CCTTGTGGTAAGGACACATGC
1 CCGTGTGGCAAAGACACAAAC
*
68144680 CCGTGTGGCCAAGACA
1 CCGTGTGGCAAAGACA
68144696 GATGCTTATG
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.29, C:0.28, G:0.28, T:0.16
Consensus pattern (21 bp):
CCGTGTGGCAAAGACACAAAC
Found at i:68146406 original size:67 final size:67
Alignment explanation
Indices: 68146328--68146460 Score: 257
Period size: 67 Copynumber: 2.0 Consensus size: 67
68146318 GGGGAGGGGA
68146328 GAGGAGAGAGGAGAGAGGGAGGTGGAGGGATTTTTATTTTATTTAATATAAATATAAATTTATTA
1 GAGGAGAGAGGAGAGAGGGAGGTGGAGGGATTTTTATTTTATTTAATATAAATATAAATTTATTA
68146393 TG
66 TG
*
68146395 GAGGGGAGAGGAGAGAGGGAGGTGGAGGGATTTTTATTTTATTTAATATAAATATAAATTTATTA
1 GAGGAGAGAGGAGAGAGGGAGGTGGAGGGATTTTTATTTTATTTAATATAAATATAAATTTATTA
68146460 T
66 T
68146461 TTATTATTTT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.35, C:0.00, G:0.30, T:0.35
Consensus pattern (67 bp):
GAGGAGAGAGGAGAGAGGGAGGTGGAGGGATTTTTATTTTATTTAATATAAATATAAATTTATTA
TG
Found at i:68146586 original size:9 final size:9
Alignment explanation
Indices: 68146565--68146627 Score: 56
Period size: 9 Copynumber: 6.6 Consensus size: 9
68146555 GAGGAATTTT
68146565 TATTTTTATA
1 TATTTTTA-A
68146575 TATTTTTAA
1 TATTTTTAA
68146584 TATTTATTAA
1 TATTT-TTAA
68146594 -ATTTATTAA
1 TATTT-TTAA
*
68146603 TATAAATTTAA
1 TAT--TTTTAA
*
68146614 AATTTTTAA
1 TATTTTTAA
68146623 TATTT
1 TATTT
68146628 ATTTTTATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
9 24 0.53
10 14 0.31
11 6 0.13
12 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TATTTTTAA
Found at i:68146649 original size:32 final size:31
Alignment explanation
Indices: 68146563--68146651 Score: 94
Period size: 32 Copynumber: 2.9 Consensus size: 31
68146553 TGGAGGAATT
68146563 TTTATTTTTATATA-TTTTTAATATTTATTAAA
1 TTTATTTTTATATATTTTTTAA-ATTT-TTAAA
* ** *
68146595 TTTA--TTAATATAAATTTAAAATTTTTAATA
1 TTTATTTTTATATATTTTTTAAATTTTTAA-A
68146625 TTTATTTTTATATATTTTTTAAATTTT
1 TTTATTTTTATATATTTTTTAAATTTT
68146652 AGATAGTATT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
29 4 0.09
30 16 0.35
31 5 0.11
32 21 0.46
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (31 bp):
TTTATTTTTATATATTTTTTAAATTTTTAAA
Found at i:68146713 original size:22 final size:21
Alignment explanation
Indices: 68146686--68146755 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 21
68146676 AATAATTTTT
68146686 TTTATTCTTATGTATTTTTAAA
1 TTTATT-TTATGTATTTTTAAA
68146708 TTTATTATTA--TATTTTTGAAA
1 TTTATT-TTATGTATTTTT-AAA
* *
68146729 -ATA-TTTATGTATTTTTATA
1 TTTATTTTATGTATTTTTAAA
68146748 TTT-TTTTA
1 TTTATTTTA
68146756 AAATTTTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
18 3 0.08
19 3 0.08
20 21 0.54
21 3 0.08
22 9 0.23
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (21 bp):
TTTATTTTATGTATTTTTAAA
Found at i:68147693 original size:36 final size:36
Alignment explanation
Indices: 68147646--68147718 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
68147636 ACATGGCCTA
68147646 TAAGATATCCCCAATGCCTTCCATACTAGTTCTTCT
1 TAAGATATCCCCAATGCCTTCCATACTAGTTCTTCT
*
68147682 TAAGATATCCCCAATGCTTTCCATACTAGTTCTTCT
1 TAAGATATCCCCAATGCCTTCCATACTAGTTCTTCT
68147718 T
1 T
68147719 CCATTCTCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.25, C:0.29, G:0.08, T:0.38
Consensus pattern (36 bp):
TAAGATATCCCCAATGCCTTCCATACTAGTTCTTCT
Found at i:68165292 original size:26 final size:26
Alignment explanation
Indices: 68165261--68165361 Score: 175
Period size: 26 Copynumber: 3.9 Consensus size: 26
68165251 TGATAAAAAT
*
68165261 GTTAGGTAAATGTTCCATGATAATAG
1 GTTAGGTAAATGTTCCATGATAATGG
68165287 GTTAGGTAAATGTTCCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
*
68165313 GTTAGGTAAATGTTTCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
*
68165339 GTTAGGTAAATGTTTCATGATAA
1 GTTAGGTAAATGTTCCATGATAA
68165362 GAATTTCATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
GTTAGGTAAATGTTCCATGATAATGG
Found at i:68171105 original size:26 final size:26
Alignment explanation
Indices: 68171074--68171174 Score: 175
Period size: 26 Copynumber: 3.9 Consensus size: 26
68171064 TGATAAAAAT
*
68171074 GTTAGGTAAATGTTCCATGATAATAG
1 GTTAGGTAAATGTTCCATGATAATGG
68171100 GTTAGGTAAATGTTCCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
*
68171126 GTTAGGTAAATGTTTCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
*
68171152 GTTAGGTAAATGTTTCATGATAA
1 GTTAGGTAAATGTTCCATGATAA
68171175 GAATTTCATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
GTTAGGTAAATGTTCCATGATAATGG
Found at i:68174669 original size:16 final size:15
Alignment explanation
Indices: 68174650--68174792 Score: 154
Period size: 15 Copynumber: 9.5 Consensus size: 15
68174640 GGAGGAAGCA
68174650 AAAAAAATTTTCCAGC
1 AAAAAAA-TTTCCAGC
68174666 AAAAAAATTTCAGCAGC
1 AAAAAAATTTC--CAGC
*
68174683 AAAAAATTTTCCAGC
1 AAAAAAATTTCCAGC
68174698 -AAAAAA-TTCCAGC
1 AAAAAAATTTCCAGC
68174711 AGCAAAAAATTTCCAGC
1 A--AAAAAATTTCCAGC
*
68174728 AAAAAAA-TTCCAACC
1 AAAAAAATTTCC-AGC
*
68174743 AAAAAAAATTCCAGC
1 AAAAAAATTTCCAGC
68174758 AAAGAAAA-TTCCA--
1 AAA-AAAATTTCCAGC
68174771 AAAAAAATTTCCAGC
1 AAAAAAATTTCCAGC
68174786 AAAAAAA
1 AAAAAAA
68174793 AAACCAAAAA
Statistics
Matches: 111, Mismatches: 4, Indels: 25
0.79 0.03 0.18
Matches are distributed among these distances:
12 4 0.04
13 15 0.14
14 9 0.08
15 40 0.36
16 21 0.19
17 22 0.20
ACGTcount: A:0.56, C:0.20, G:0.07, T:0.17
Consensus pattern (15 bp):
AAAAAAATTTCCAGC
Found at i:68174793 original size:16 final size:16
Alignment explanation
Indices: 68174646--68174793 Score: 131
Period size: 16 Copynumber: 9.7 Consensus size: 16
68174636 AAGGGGAGGA
68174646 AGCAAAAAAAATTTTCC
1 AGCAAAAAAAA-TTTCC
68174663 AGC-AAAAAAATTT-C
1 AGCAAAAAAAATTTCC
*
68174677 AGCAGCAAAAAATTTTCC
1 AGCA--AAAAAAATTTCC
68174695 AGC--AAAAAA-TTCC
1 AGCAAAAAAAATTTCC
*
68174708 AGCAGCAAAAAATTTCC
1 AGCA-AAAAAAATTTCC
68174725 AGC-AAAAAAA-TTCC
1 AGCAAAAAAAATTTCC
*
68174739 AACCAAAAAAAA-TTCC
1 -AGCAAAAAAAATTTCC
*
68174755 AGCAAAGAAAA-TT-C
1 AGCAAAAAAAATTTCC
68174769 --CAAAAAAAATTTCC
1 AGCAAAAAAAATTTCC
68174783 AGCAAAAAAAA
1 AGCAAAAAAAA
68174794 AACCAAAAAA
Statistics
Matches: 110, Mismatches: 7, Indels: 29
0.75 0.05 0.20
Matches are distributed among these distances:
12 8 0.07
13 9 0.08
14 15 0.14
15 22 0.20
16 33 0.30
17 19 0.17
18 4 0.04
ACGTcount: A:0.56, C:0.20, G:0.07, T:0.17
Consensus pattern (16 bp):
AGCAAAAAAAATTTCC
Found at i:68175278 original size:31 final size:34
Alignment explanation
Indices: 68175210--68175282 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 34
68175200 GGGTGATATG
* *
68175210 TTAAGTTAGTGGGTTGGGTTGGTTGTGTTGGGTTTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGTT--GATTA
*
68175246 TTAAGTTAGTGAGTTGGGTTGGTT-TGTATTATTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGT-TGATTA
68175280 TTA
1 TTA
68175283 TTATTTTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 6 0.18
35 3 0.09
36 24 0.73
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.49
Consensus pattern (34 bp):
TTAAGTTAGTGAGTTGGGTTGGTTGTGTTGATTA
Found at i:68179582 original size:16 final size:16
Alignment explanation
Indices: 68179563--68179612 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
68179553 ATGAAAAGAA
*
68179563 AAAAAACAAAAAAAAT
1 AAAAAACAAAAAAAAG
*
68179579 AAAAAGA-AAAAAAAGG
1 AAAAA-ACAAAAAAAAG
*
68179595 ACAAAAC-AAAAAAAG
1 AAAAAACAAAAAAAAG
68179610 AAA
1 AAA
68179613 TCAAATGCCA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
15 10 0.37
16 16 0.59
17 1 0.04
ACGTcount: A:0.84, C:0.06, G:0.08, T:0.02
Consensus pattern (16 bp):
AAAAAACAAAAAAAAG
Found at i:68179600 original size:24 final size:25
Alignment explanation
Indices: 68179556--68179612 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
68179546 GACAGTCATG
*
68179556 AAAAGAAAAAAAACAAAAAAA-ATA
1 AAAAGAAAAAAAACAAAAAAACAAA
** *
68179580 AAAAGAAAAAAAAGGACAAAACAAA
1 AAAAGAAAAAAAACAAAAAAACAAA
68179605 AAAAGAAA
1 AAAAGAAA
68179613 TCAAATGCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 18 0.64
25 10 0.36
ACGTcount: A:0.84, C:0.05, G:0.09, T:0.02
Consensus pattern (25 bp):
AAAAGAAAAAAAACAAAAAAACAAA
Found at i:68179600 original size:25 final size:24
Alignment explanation
Indices: 68179556--68179612 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
68179546 GACAGTCATG
68179556 AAAAGAAAAAAAACAAAAAA-AATA
1 AAAAGAAAAAAAACAAAAAACAA-A
* *
68179580 AAAAGAAAAAAAAGGACAAAACAAA
1 AAAAGAAAAAAAA-CAAAAAACAAA
68179605 AAAAGAAA
1 AAAAGAAA
68179613 TCAAATGCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 13 0.45
25 14 0.48
26 2 0.07
ACGTcount: A:0.84, C:0.05, G:0.09, T:0.02
Consensus pattern (24 bp):
AAAAGAAAAAAAACAAAAAACAAA
Found at i:68180208 original size:12 final size:12
Alignment explanation
Indices: 68180187--68180220 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
68180177 TCATTCATTC
68180187 AAAAGTAAAAAAA
1 AAAAG-AAAAAAA
*
68180200 AAAAGAAAAAAG
1 AAAAGAAAAAAA
68180212 AAAAGAAAA
1 AAAAGAAAA
68180221 TGGAGAGGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (12 bp):
AAAAGAAAAAAA
Found at i:68182302 original size:145 final size:145
Alignment explanation
Indices: 68181826--68183613 Score: 3244
Period size: 145 Copynumber: 12.3 Consensus size: 145
68181816 CTCATATTGC
*
68181826 GAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
68181891 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
66 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
68181956 CATATTGCGAGAAAT
131 CATATTGCGAGAAAT
* *
68181971 GAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTG
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
68182035 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT-TGTTTTCAAAATTCAACT
66 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
68182099 CATATTGCGAGAAAT
131 CATATTGCGAGAAAT
68182114 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
68182179 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
66 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
*
68182244 CATATTGCAAGAAAT
131 CATATTGCGAGAAAT
* * *
68182259 GAGTTGAGCCTCAAGACGCATTGAGGCATTTTCAATTTTTGCTTTTCAAAATTCAACTCATATTG
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
*
68182324 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAAC
66 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAAC
68182389 TCATATTGCGAGAAAT
130 TCATATTGCGAGAAAT
* *
68182405 GAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTG
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
68182469 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
66 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
68182534 CATATTGCGAGAAAT
131 CATATTGCGAGAAAT
68182549 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
68182614 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
66 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
*
68182679 CATATTGCAAGAAAT
131 CATATTGCGAGAAAT
* *
68182694 GAGTTGAGCCTCAAGACACATTGAGGCATTTTCAATTTTTGCTTTTCAAAATTCAACTCATATTG
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
68182759 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
66 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
*
68182824 CATATTGCAAGAAAT
131 CATATTGCGAGAAAT
* * *
68182839 GAGTTGAGCCTCAAGACGCATTGAGGCATTTTCAATTTTTGCTTTTCAAAATTCAACTCATATTG
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
*
68182904 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAAC
66 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAAC
68182969 TCATATTGCGAGAAAT
130 TCATATTGCGAGAAAT
* *
68182985 GAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTG
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
68183049 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
66 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
68183114 CATATTGCGAGAAAT
131 CATATTGCGAGAAAT
68183129 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
68183194 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
66 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
*
68183259 CATATTGCAAGAAAT
131 CATATTGCGAGAAAT
* *
68183274 GAGTTGAGCCTCAAGACACATTGAGGCATTTTCAATTTTTGCTTTTCAAAATTCAACTCATATTG
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
* *
68183339 CGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAAC
66 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAAC
68183404 TCATATTGCGAGAAAT
130 TCATATTGCGAGAAAT
* *
68183420 GAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTG
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
68183484 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
66 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
68183549 CATATTGCGAGAAAT
131 CATATTGCGAGAAAT
** *
68183564 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAAAATCTACTTTTCAAA
1 GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAA
68183614 TTAAGTTTCA
Statistics
Matches: 1587, Mismatches: 48, Indels: 16
0.96 0.03 0.01
Matches are distributed among these distances:
143 72 0.05
144 345 0.22
145 971 0.61
146 199 0.13
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (145 bp):
GAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTG
CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACT
CATATTGCGAGAAAT
Done.