Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 206 of 343
Found at i:68183714 original size:14 final size:13
Alignment explanation
Indices: 68183681--68183710 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
68183671 TGCTGAGGTA
*
68183681 TTTTCAATTTTTG
1 TTTTCAATTTATG
68183694 TTTTCAATTTATG
1 TTTTCAATTTATG
68183707 TTTT
1 TTTT
68183711 TCAAAAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.70
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:68183728 original size:89 final size:87
Alignment explanation
Indices: 68183521--68183750 Score: 268
Period size: 89 Copynumber: 2.6 Consensus size: 87
68183511 GTTGAGGTAA
* * **
68183521 TTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACAT
1 TTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACAT
68183585 TGAGGTATTTTCAAAATCTACT
66 TGAGGTATTTTCAAAATCTACT
* * * * * * *
68183607 TTTCAAATTAAG-TTTCAAAAAAATCAATTCATATTGCGAGAGGTAAGTTGAGTCTCAGGTCACA
1 TTTCAATTTATGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACA
* * **
68183671 TGCTGAGGTATTTTC-AATTTTTGT
65 T--TGAGGTATTTTCAAAATCTACT
68183695 TTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTCAATTTATG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
68183751 TTTAATTCCT
Statistics
Matches: 118, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
85 4 0.03
86 9 0.08
87 39 0.33
88 15 0.13
89 47 0.40
90 4 0.03
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.37
Consensus pattern (87 bp):
TTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACAT
TGAGGTATTTTCAAAATCTACT
Found at i:68183788 original size:54 final size:55
Alignment explanation
Indices: 68183705--68183812 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 55
68183695 TTTCAATTTA
*
68183705 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTCC
68183760 TGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTC
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTC
68183813 AACTCATATT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
54 44 0.85
55 8 0.15
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37
Consensus pattern (55 bp):
TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTCC
Found at i:68183824 original size:38 final size:38
Alignment explanation
Indices: 68183773--68183849 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
68183763 TTTTCAAAAA
68183773 TCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAAT
1 TCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAAT
*
68183811 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAAT
1 TCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAAT
68183849 T
1 T
68183850 TCTGTTTTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (38 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAAT
Found at i:68183876 original size:92 final size:92
Alignment explanation
Indices: 68183719--68183892 Score: 339
Period size: 92 Copynumber: 1.9 Consensus size: 92
68183709 TTTCAAAAAA
68183719 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCCTGTTTTTCAAAAATCAACTCATAT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCCTGTTTTTCAAAAATCAACTCATAT
68183784 TGCGAGAGGTGAGTTGAACCTTTTAAT
66 TGCGAGAGGTGAGTTGAACCTTTTAAT
*
68183811 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATAT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCCTGTTTTTCAAAAATCAACTCATAT
68183876 TGCGAGAGGTGAGTTGA
66 TGCGAGAGGTGAGTTGA
68183893 GCCTCGGGTC
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 81 1.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (92 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCCTGTTTTTCAAAAATCAACTCATAT
TGCGAGAGGTGAGTTGAACCTTTTAAT
Found at i:68184512 original size:25 final size:25
Alignment explanation
Indices: 68184478--68184525 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
68184468 AAAAGTCTTT
68184478 ACTCTATTCTCGTTACACGACAACA
1 ACTCTATTCTCGTTACACGACAACA
*
68184503 ACTCTGTTCTCGTTACACGACAA
1 ACTCTATTCTCGTTACACGACAA
68184526 TGAGTAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.29
Consensus pattern (25 bp):
ACTCTATTCTCGTTACACGACAACA
Found at i:68185020 original size:30 final size:28
Alignment explanation
Indices: 68184926--68185053 Score: 107
Period size: 32 Copynumber: 4.2 Consensus size: 28
68184916 GGGGGAAGCA
*
68184926 AAAAAAATTTTCCAACAAAAAAATTCTAGC
1 AAAAAAA--TTCCAGCAAAAAAATTCTAGC
* *
68184956 AGCAAAAAATTTTCCAGCAAAAATATTCCCAGC
1 A--AAAAAA--TTCCAGCAAAAAAATT-CTAGC
68184989 AAAAAAATTCCAGCCAAAAAGAATTCTAGC
1 AAAAAAATTCCAG-CAAAAA-AATTCTAGC
*
68185019 AAAGAAAATTCCA--AAAAAAATTTCCAGC
1 AAA-AAAATTCCAGCAAAAAAA-TTCTAGC
68185047 AAAAAAA
1 AAAAAAA
68185054 ACCAAAAAAG
Statistics
Matches: 85, Mismatches: 6, Indels: 17
0.79 0.06 0.16
Matches are distributed among these distances:
27 6 0.07
28 14 0.16
29 6 0.07
30 14 0.16
31 18 0.21
32 22 0.26
33 5 0.06
ACGTcount: A:0.55, C:0.19, G:0.07, T:0.19
Consensus pattern (28 bp):
AAAAAAATTCCAGCAAAAAAATTCTAGC
Found at i:68185053 original size:15 final size:15
Alignment explanation
Indices: 68184926--68185053 Score: 113
Period size: 15 Copynumber: 8.5 Consensus size: 15
68184916 GGGGGAAGCA
*
68184926 AAAAAAATTTTCCAAC
1 AAAAAAA-TTTCCAGC
*
68184942 AAAAAAATTCTAGCAGC
1 AAAAAAATT-T-CCAGC
*
68184959 AAAAAATTTTCCAGC
1 AAAAAAATTTCCAGC
* *
68184974 AAAAATATTCCCAGC
1 AAAAAAATTTCCAGC
68184989 AAAAAAA-TTCCAGCC
1 AAAAAAATTTCCAG-C
*
68185004 AAAAAGAA-TTCTAGC
1 AAAAA-AATTTCCAGC
68185019 AAAGAAAA-TTCCA--
1 AAA-AAAATTTCCAGC
68185032 AAAAAAATTTCCAGC
1 AAAAAAATTTCCAGC
68185047 AAAAAAA
1 AAAAAAA
68185054 ACCAAAAAAG
Statistics
Matches: 93, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
12 4 0.04
13 8 0.09
14 5 0.05
15 47 0.51
16 18 0.19
17 11 0.12
ACGTcount: A:0.55, C:0.19, G:0.07, T:0.19
Consensus pattern (15 bp):
AAAAAAATTTCCAGC
Found at i:68185546 original size:31 final size:34
Alignment explanation
Indices: 68185478--68185550 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 34
68185468 GAGTGATATG
* *
68185478 TTAAGTTAGTGGGTTGGGTTGGTTGTGTTGGGTTTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGTT--GATTA
*
68185514 TTAAGTTAGTGAGTTGGGTTGGTT-TGTATTATTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGT-TGATTA
68185548 TTA
1 TTA
68185551 TTTTTAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 6 0.18
35 3 0.09
36 24 0.73
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.49
Consensus pattern (34 bp):
TTAAGTTAGTGAGTTGGGTTGGTTGTGTTGATTA
Found at i:68187885 original size:131 final size:131
Alignment explanation
Indices: 68187642--68187895 Score: 447
Period size: 131 Copynumber: 1.9 Consensus size: 131
68187632 TCATTTAAAG
68187642 ATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCTTATCGTGCTGG
1 ATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCTTATCGTGCTGG
* ** *
68187707 GTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATTTCTTTGGAATTTCACTCATGTCTTTAGA
66 GTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTTAGA
68187772 A
131 A
*
68187773 ATTCTTTAAAACGAAGG-AAGTGTTCGATGTTTGGCAATTCGGGGAATCTTGCCTTATCGTGCTG
1 ATTCTTTAAAACGAAGGCAA-TGTTCGATGTTTGGCAATTCGGGGAATCGTGCCTTATCGTGCTG
68187837 GGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
65 GGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
68187896 TTTCTAAACT
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
130 2 0.02
131 115 0.98
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (131 bp):
ATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCTTATCGTGCTGG
GTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTTAGA
A
Found at i:68188579 original size:39 final size:39
Alignment explanation
Indices: 68188525--68188605 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
68188515 ATAAATTTTC
68188525 AATTAAGTTTTAATTTGGTTGGTATTAATATTGTTGATG
1 AATTAAGTTTTAATTTGGTTGGTATTAATATTGTTGATG
68188564 AATTAAGTTTTAATTTGGTTGGTATTAATATTGTTGATG
1 AATTAAGTTTTAATTTGGTTGGTATTAATATTGTTGATG
68188603 AAT
1 AAT
68188606 AAATAAAATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.51
Consensus pattern (39 bp):
AATTAAGTTTTAATTTGGTTGGTATTAATATTGTTGATG
Found at i:68191614 original size:39 final size:39
Alignment explanation
Indices: 68191558--68191659 Score: 159
Period size: 39 Copynumber: 2.6 Consensus size: 39
68191548 ACAAAGCATG
68191558 CGGGACTTTAAGCCCGGATATAATACCAGCACAAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACAAATGCCTT
* *
68191599 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTT
*
68191638 CGAGACTTAGCCCGGATATAAT
1 CGGGACTTAGCCCGGATATAAT
68191660 TCTCCATTAT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
39 49 0.86
40 2 0.04
41 6 0.11
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTT
Found at i:68193411 original size:19 final size:19
Alignment explanation
Indices: 68193387--68193427 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
68193377 GTTATAATAT
*
68193387 TAATATTCCTTTAATATTA
1 TAATATTCATTTAATATTA
*
68193406 TAATATTCATTTCATATTA
1 TAATATTCATTTAATATTA
68193425 TAA
1 TAA
68193428 AACAATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATATTCATTTAATATTA
Found at i:68206756 original size:23 final size:23
Alignment explanation
Indices: 68206730--68206774 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
68206720 AGGGGGGGTT
68206730 AAAGTGAAAACCCGCAAAGGGCC
1 AAAGTGAAAACCCGCAAAGGGCC
68206753 AAAGTGAAAACCCGCAAAGGGC
1 AAAGTGAAAACCCGCAAAGGGC
68206775 GCTTTGAGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.44, C:0.24, G:0.27, T:0.04
Consensus pattern (23 bp):
AAAGTGAAAACCCGCAAAGGGCC
Found at i:68208290 original size:180 final size:179
Alignment explanation
Indices: 68207914--68208719 Score: 996
Period size: 180 Copynumber: 4.5 Consensus size: 179
68207904 ATTAGGTAAA
* * * *
68207914 AATTGAAGATTTTATCTCCCTGAAGTTGCAACGGAGCAGATCTTCGTAAAT-GATGAATCTTATC
1 AATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGCAGATAG-TGAATCTTATC
* * * *
68207978 TCCATGTATCGGCAATGGAGCAGATTTTACCACCAGCCTCATCTTTTTGAGGTAGCATGAGAGCA
65 TCCATGTATCGGCAATGGAGCAGATTTTACCACAAGCCTCATCTCTCTGAGGTAGCAAGAGAGCA
* *
68208043 GGTTGAAGAATGAGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGGG
130 GGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAG
* * * *
68208093 AATTAAAGATCTTATCTCCCTGAAGTTGCAGCGGAGTAGATCTTCACAGACAGTGAATCTTATCT
1 AATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGCAGATAGTGAATCTTATCT
* * *
68208158 CCATGTATCAGCAATGAAGCAGATTTTACCACTAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCA
66 CCATGTATCGGCAATGGAGCAGATTTTACCAC-AAGCCTCATCTCTCTGAGGTAGCAAGAGAGCA
* *
68208223 GGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAAACTGAG
130 GGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAG
* * * *
68208273 AATTGAAGATTTTATCTCTCTG-AGATTGAAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATC
1 AATTGAAGATCTTATCTCCCTGAAG-TTGCAGCGGAGCAGATCTTCGCAGATAGTGAATCTTATC
* ** * *
68208337 TCTATGTATCGGTGATGGAGCAGATTTTAGCCACTAA-CCTTATCTCTCTGAGGTAGTAAGAGAG
65 TCCATGTATCGGCAATGGAGCAGATTTTA-CCAC-AAGCCTCATCTCTCTGAGGTAGCAAGAGAG
* * * *
68208401 CAGGTTGAAGAATGAGTTTTATTTTCCTGAGGTAGCAAAGAAGCAGACTAAG
128 CAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAG
* * * * *
68208453 AATTGAAGATCTTATATCCCTG-AGATGGCAGTGGAGCAGATCTTCGCAGATGGTGAATTTTATC
1 AATTGAAGATCTTATCTCCCTGAAG-TTGCAGCGGAGCAGATCTTCGCAGATAGTGAATCTTATC
* * * * * * * *
68208517 TCTATGTATCTGTAATGGAGCAAATTTTACCACCAGTCTCATTTCTCTGAGGTAGCAAGAGAGTA
65 TCCATGTATCGGCAATGGAGCAGATTTTACCACAAGCCTCATCTCTCTGAGGTAGCAAGAGAGCA
* *
68208582 GGTTGAAAAATGAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAG
130 GGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAG
* * * * * * * * *
68208632 GATTGAGGATATTAGCTCCCTGAAGTTGCAGTGGAGCA-A-ATT-GAAAATAATGAATCTTATCT
1 AATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGCAGATAGTGAATCTTATCT
*
68208694 CCATGTATTGGCAATGGAGCAGATTT
66 CCATGTATCGGCAATGGAGCAGATTT
68208720 AACCTATCAA
Statistics
Matches: 543, Mismatches: 78, Indels: 15
0.85 0.12 0.02
Matches are distributed among these distances:
176 36 0.07
177 2 0.00
178 2 0.00
179 188 0.35
180 308 0.57
181 7 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (179 bp):
AATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGCAGATAGTGAATCTTATCT
CCATGTATCGGCAATGGAGCAGATTTTACCACAAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAG
GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAG
Found at i:68208596 original size:359 final size:359
Alignment explanation
Indices: 68207914--68208737 Score: 1050
Period size: 359 Copynumber: 2.3 Consensus size: 359
68207904 ATTAGGTAAA
*
68207914 AATTGAAGATTTTATCTCCCTGAAGTTGCAACGGAGCAGATCTTCGTAAATGATGAATCTTATCT
1 AATTGAAGATTTTATCTCCCTGAAGTTGCAACGGAGCAGATCTTCGCAAATGATGAATCTTATCT
* * * *
68207979 CCATGTATCGGCAATGGAGCAGATTTTACCACCAGCCTCATCTTTTTGAGGTAGCATGAGAGCAG
66 CCATGTATCGGCAATGGAGCAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGCAG
* ** *
68208044 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGGGAATTAAAGATCTTATC
131 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAACAAAGAAGCAGACTAAGAATTAAAGATCTTATA
* *
68208109 TCCCTGAAGTTGCAGCGGAGTAGATCTTCACAGACAGTGAATCTTATCTCCATGTATCAGCAATG
196 TCCCTGAAGTGGCAGCGGAGCAGATCTTCACAGACAGTGAATCTTATCTCCATGTATCAGCAATG
* * *
68208174 AAGCAGATTTTACCACTAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTC
261 AAGCAAATTTTACCACTAAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAAATGAGTC
*
68208239 TTATCTTCTTGAGGTAGCAAGGAAGCAAACTGAG
326 TTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAG
* * *
68208273 AATTGAAGATTTTATCTCTCTG-AGATTG-AAGCGGAGCAGATCTTCGCAGATGGTGAATCTTAT
1 AATTGAAGATTTTATCTCCCTGAAG-TTGCAA-CGGAGCAGATCTTCGCAAATGATGAATCTTAT
* ** * * *
68208336 CTCTATGTATCGGTGATGGAGCAGATTTTAGCCACTAACCTTATCTCTCTGAGGTAGTAAGAGAG
64 CTCCATGTATCGGCAATGGAGCAGATTTTA-CCACCAACCTCATCTCTCTGAGGTAGCAAGAGAG
* * * *
68208401 CAGGTTGAAGAATGAGTTTTATTTTCCTGAGGTAGCAAAGAAGCAGACTAAGAATTGAAGATCTT
128 CAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAACAAAGAAGCAGACTAAGAATTAAAGATCTT
* * ** * * * *
68208466 ATATCCCTG-AGATGGCAGTGGAGCAGATCTTCGCAGATGGTGAATTTTATCTCTATGTATCTGT
193 ATATCCCTGAAG-TGGCAGCGGAGCAGATCTTCACAGACAGTGAATCTTATCTCCATGTATCAGC
* * * * *
68208530 AATGGAGCAAATTTTACCAC-CAGTCTCATTTCTCTGAGGTAGCAAGAGAGTAGGTTGAAAAATG
257 AATGAAGCAAATTTTACCACTAAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAAATG
* *
68208594 AGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAG
322 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAG
* * * * ** * * *
68208632 GATTGAGGATATTAGCTCCCTGAAGTTGCAGTGGAGCA-A-ATT-GAAAATAATGAATCTTATCT
1 AATTGAAGATTTTATCTCCCTGAAGTTGCAACGGAGCAGATCTTCGCAAATGATGAATCTTATCT
* * * *
68208694 CCATGTATTGGCAATGGAGCAGATTTAACCTATCAACCTTATCT
66 CCATGTATCGGCAATGGAGCAGATTTTACC-ACCAACCTCATCT
68208738 TCCTAAAGGT
Statistics
Matches: 396, Mismatches: 62, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
355 2 0.01
356 50 0.13
357 2 0.01
358 5 0.01
359 181 0.46
360 156 0.39
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (359 bp):
AATTGAAGATTTTATCTCCCTGAAGTTGCAACGGAGCAGATCTTCGCAAATGATGAATCTTATCT
CCATGTATCGGCAATGGAGCAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGCAG
GTTGAAGAATGAGTCTTATCTTCCTGAGGTAACAAAGAAGCAGACTAAGAATTAAAGATCTTATA
TCCCTGAAGTGGCAGCGGAGCAGATCTTCACAGACAGTGAATCTTATCTCCATGTATCAGCAATG
AAGCAAATTTTACCACTAAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAAATGAGTC
TTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAG
Found at i:68213609 original size:19 final size:19
Alignment explanation
Indices: 68213560--68213611 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 19
68213550 TTTGTATCAC
*
68213560 ATTAAAAATTTTGATATTA
1 ATTAAAAATTTTAATATTA
*
68213579 AGTTATAAATTTTAATATTA
1 A-TTAAAAATTTTAATATTA
68213599 ATTAAAAATTTTA
1 ATTAAAAATTTTA
68213612 GTTTCATGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (19 bp):
ATTAAAAATTTTAATATTA
Found at i:68215867 original size:15 final size:15
Alignment explanation
Indices: 68215849--68215890 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
68215839 ACAAATAGAC
68215849 GATAATAAAATAATA
1 GATAATAAAATAATA
68215864 GATAATAAGGTAATAATA
1 GATAATAA---AATAATA
68215882 -ATAATAAAA
1 GATAATAAAA
68215891 GCATAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
14 2 0.08
15 8 0.33
17 7 0.29
18 7 0.29
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (15 bp):
GATAATAAAATAATA
Found at i:68218651 original size:137 final size:136
Alignment explanation
Indices: 68218405--68218690 Score: 500
Period size: 137 Copynumber: 2.1 Consensus size: 136
68218395 CATTGGGCCT
**
68218405 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
68218470 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
*
68218535 TATATGC
130 CATATGC
*
68218542 AAGCCCATTTGGGTAACAGTGGTACTGGGCTAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
68218607 AGCCCCTTATTCAGATAACAGTATGGTCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
68218672 ATATGC
131 ATATGC
*
68218678 AAGCTCATTTGGG
1 AAGCCCATTTGGG
68218691 GAGACTACTC
Statistics
Matches: 142, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
136 20 0.14
137 122 0.86
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:68218975 original size:25 final size:27
Alignment explanation
Indices: 68218938--68218990 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
68218928 TCAAACATGC
68218938 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
68218964 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
68218990 A
1 A
68218991 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:68220514 original size:26 final size:26
Alignment explanation
Indices: 68220478--68220561 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
68220468 CATGAAATTC
68220478 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
68220504 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
68220530 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
68220556 TTATCA
1 TTATCA
68220562 ATTTGCATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:68223510 original size:131 final size:131
Alignment explanation
Indices: 68223161--68223677 Score: 528
Period size: 131 Copynumber: 4.0 Consensus size: 131
68223151 TGAAAATTCC
* * ** * **
68223161 TTAAAACGAAGGCAATATTTGATTGCTTGAAAATTCGGGAATCATGCCCTATCATGCTGGGTTTT
1 TTAAAACGAAGGCAATACTCGA-TGCTTGGCAATTCGGGAATCATGCCCTATCGTGCTGGGTTGC
* * * *
68223226 GATTTCTCGTTTGTTCAAAATAATCGAATG-TTCCTTTAGAATCTCACTCGTGTTTTTCT-AAAT
65 AATTTCTCGTTTGTTCAAAATAATCGAA-GATTCCTTTAGAATTTCACTCATG-TTTTCTAAAAA
68223289 C-CT
128 CTCT
* * * ** ** *
68223292 AT-ATA--AAGGCGATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTTGC
1 TTAAAACGAAGGCAATACTCGATGCTTGGCAATTCG-GGAATCATGCCCTATCGTGCTGGGTTGC
* * * * * *
68223354 AATCTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTTGAATTTCACTTACGTTTTCTAAAAACT
65 AATTTCTCGTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATGTTTTCTAAAAACT
68223419 CT
130 CT
* * * *
68223421 TTAAAACGAAGGCAATACTCGGTGCTTGGCAATTCGAGAATCATGCCCTATCGTGCTGAGTTGCG
1 TTAAAACGAAGGCAATACTCGATGCTTGGCAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCA
* * * * * *
68223486 ATTTCTCGTTTGTTCGAAACAATCGAAGATTCCTTTGGAATTCCACTCATATATT-TAAAAACTC
66 ATTTCTCGTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATGTTTTCTAAAAACTC
68223550 T
131 T
* * * * * * *
68223551 TCAAAACGAAGGTAATACTCGATGTTTGGCAACTCGGGGAATCGTGCCCTATCGTGATGGGTTAC
1 TTAAAACGAAGGCAATACTCGATGCTTGGCAATTC-GGGAATCATGCCCTATCGTGCTGGGTTGC
* *
68223616 AATTTC-CTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTTTAAAA
65 AATTTCTC-GTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATGTTTTCTAAAA
68223678 TTCTAAAAAT
Statistics
Matches: 313, Mismatches: 63, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
127 17 0.05
128 81 0.26
129 3 0.01
130 45 0.14
131 140 0.45
132 27 0.09
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (131 bp):
TTAAAACGAAGGCAATACTCGATGCTTGGCAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCA
ATTTCTCGTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATGTTTTCTAAAAACTC
T
Found at i:68225501 original size:42 final size:41
Alignment explanation
Indices: 68225396--68225479 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 41
68225386 CAACTTCAAA
* *
68225396 AAGTTAGAAAATGATTGTTAAACTATTCAAAAGTTTTCATTT
1 AAGTTAAAAAATAATTGTTAAACTATTCAAAAGTTTT-ATTT
* * *
68225438 AAGTTAAAAAATGATCGTTAAACTATTCAAAAGTTTTTTTT
1 AAGTTAAAAAATAATTGTTAAACTATTCAAAAGTTTTATTT
68225479 A
1 A
68225480 TTTAAATCAC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 4 0.10
42 35 0.90
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (41 bp):
AAGTTAAAAAATAATTGTTAAACTATTCAAAAGTTTTATTT
Found at i:68225767 original size:18 final size:20
Alignment explanation
Indices: 68225746--68225782 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
68225736 GATTTTTAAA
68225746 TTTTTTTCAT-ATATATAAT
1 TTTTTTTCATAATATATAAT
68225765 TTTTTTTCATAATATATA
1 TTTTTTTCATAATATATA
68225783 TAATATATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTTTTCATAATATATAAT
Found at i:68227299 original size:31 final size:31
Alignment explanation
Indices: 68227262--68227327 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
68227252 AACAATCATG
*
68227262 TGACTTAAATAAAAACTTTTGAATAGTTCAA
1 TGACTTAAATAAAAACTTTGGAATAGTTCAA
* *
68227293 TGACTTAAATGAAACCTTTGGAATAGTTCAA
1 TGACTTAAATAAAAACTTTGGAATAGTTCAA
68227324 TGAC
1 TGAC
68227328 CATTTTATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTGGAATAGTTCAA
Found at i:68228222 original size:15 final size:15
Alignment explanation
Indices: 68228202--68228231 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
68228192 ATTGGATGAT
68228202 AAAATAGAATTTTAA
1 AAAATAGAATTTTAA
*
68228217 AAAATATAATTTTAA
1 AAAATAGAATTTTAA
68228232 CTCCAAAGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (15 bp):
AAAATAGAATTTTAA
Found at i:68228680 original size:37 final size:37
Alignment explanation
Indices: 68228630--68228704 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
68228620 TGCAGTTGCA
68228630 ACTATAAATGAACAACTAAAATAGTAAAAATAAAAAT
1 ACTATAAATGAACAACTAAAATAGTAAAAATAAAAAT
* * *
68228667 ACTATAAATGAACAACTAGACTATTAAAAATAAAAAT
1 ACTATAAATGAACAACTAAAATAGTAAAAATAAAAAT
68228704 A
1 A
68228705 GACACAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.63, C:0.09, G:0.05, T:0.23
Consensus pattern (37 bp):
ACTATAAATGAACAACTAAAATAGTAAAAATAAAAAT
Found at i:68230418 original size:23 final size:24
Alignment explanation
Indices: 68230373--68230418 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
68230363 TAAGGTATAT
*
68230373 AAAACAATTTTAAAATAAGTAATC
1 AAAACAATTTTAAAATAAATAATC
*
68230397 AAAACGATTTT-AAATAAATAAT
1 AAAACAATTTTAAAATAAATAAT
68230419 ATATAATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (24 bp):
AAAACAATTTTAAAATAAATAATC
Found at i:68230668 original size:48 final size:48
Alignment explanation
Indices: 68230611--68230708 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
68230601 TATGATGTGT
*
68230611 AAAAAGAATTTTAAAATGGATAATAAAAAGCAAAACAGTTTTAATATA
1 AAAAAGAATTTTAAAATGGACAATAAAAAGCAAAACAGTTTTAATATA
*
68230659 AAAAAGAATTTTAAAATGGACAATAAAAGGCAAAACAGTTTTAATATA
1 AAAAAGAATTTTAAAATGGACAATAAAAAGCAAAACAGTTTTAATATA
68230707 AA
1 AA
68230709 TAATATATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.58, C:0.05, G:0.11, T:0.26
Consensus pattern (48 bp):
AAAAAGAATTTTAAAATGGACAATAAAAAGCAAAACAGTTTTAATATA
Found at i:68231230 original size:41 final size:40
Alignment explanation
Indices: 68231175--68231307 Score: 124
Period size: 41 Copynumber: 3.3 Consensus size: 40
68231165 GTTTGCGATA
* **
68231175 AAACGCCGCAAAAAACTGAGCAATAACGGCGTTTTTGGTTC
1 AAACGCCGCTAAAAA-TGAGCAATAACGGCGTTTTTGGCCC
* *
68231216 AAACGCAGCTAAAAATAGAGCAATCACGGCGTTTTTGGCCC
1 AAACGCCGCTAAAAAT-GAGCAATAACGGCGTTTTTGGCCC
* * * * * **
68231257 AAACTCCGCTAAAAATTGAACAGTAGCGGCGCTTTTGG-AA
1 AAACGCCGCTAAAAA-TGAGCAATAACGGCGTTTTTGGCCC
68231297 AAACGCCGCTA
1 AAACGCCGCTA
68231308 TAGATCTAGG
Statistics
Matches: 75, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
40 11 0.15
41 63 0.84
42 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (40 bp):
AAACGCCGCTAAAAATGAGCAATAACGGCGTTTTTGGCCC
Found at i:68231373 original size:40 final size:41
Alignment explanation
Indices: 68231280--68231424 Score: 202
Period size: 41 Copynumber: 3.6 Consensus size: 41
68231270 AATTGAACAG
* *
68231280 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCTAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
* * * *
68231321 TAGCGGCGCTTTTGGAAAAACGCCACAATTGCTC-AGTTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
* *
68231361 TAGCGGCGCTTTTGTAAAAACGCAACTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
*
68231402 TAGCGGTGCTTTTGGAAAAACGC
1 TAGCGGCGCTTTTGGAAAAACGC
68231425 TGCAAAAAAC
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 34 0.38
41 56 0.62
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
Found at i:68231637 original size:14 final size:14
Alignment explanation
Indices: 68231617--68231666 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
68231607 TATGTATTAT
68231617 GGGTTTAGGGGTAA
1 GGGTTTAGGGGTAA
* * **
68231631 TGGTTTAAGGGTTG
1 GGGTTTAGGGGTAA
68231645 GGGTTTAGGGGTTAA
1 GGGTTTAGGGG-TAA
68231660 GGGTTTA
1 GGGTTTA
68231667 TATTTTAGGA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
14 19 0.70
15 8 0.30
ACGTcount: A:0.18, C:0.00, G:0.46, T:0.36
Consensus pattern (14 bp):
GGGTTTAGGGGTAA
Found at i:68237507 original size:23 final size:23
Alignment explanation
Indices: 68237477--68237578 Score: 168
Period size: 23 Copynumber: 4.4 Consensus size: 23
68237467 TGGTTGCTGC
68237477 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
68237500 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* *
68237523 TGTTTAAATGTTGTAAACTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* *
68237546 TATTTAAATGCTGTATATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
68237569 TGTTTAAATG
1 TGTTTAAATG
68237579 TTCTTTGTGT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 72 1.00
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (23 bp):
TGTTTAAATGCTGTAAATTGAAG
Found at i:68238139 original size:42 final size:43
Alignment explanation
Indices: 68238080--68238179 Score: 148
Period size: 42 Copynumber: 2.3 Consensus size: 43
68238070 TTTGGGGATA
* *
68238080 TTTAGCGACGTTTTTGGGGAAAGTGTCGCTAAAGATCATG-TC
1 TTTAGCGGCGTTTTTGGGGAAAGTGTCGCTAAAGATCACGATC
* *
68238122 TTTAGCGGCGCTTTTGGGGAAAGTGTCGCTAAAGGTCACGATC
1 TTTAGCGGCGTTTTTGGGGAAAGTGTCGCTAAAGATCACGATC
*
68238165 TTTAGCAGCGTTTTT
1 TTTAGCGGCGTTTTT
68238180 TCTAGAAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 36 0.71
43 15 0.29
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (43 bp):
TTTAGCGGCGTTTTTGGGGAAAGTGTCGCTAAAGATCACGATC
Found at i:68240000 original size:234 final size:234
Alignment explanation
Indices: 68239523--68240109 Score: 699
Period size: 234 Copynumber: 2.5 Consensus size: 234
68239513 TTCGATCTAT
* * * * * * * * * * * *
68239523 TCCACTGCAATCTTCAGGAAAAGAAGACTTGTAGCTTTAATCTGCTCTATTGTAACTTTAGAGAG
1 TCCACTGCAA-CTTCAGGGAGATAAAACTTGTAACTTCAACCTCCTCCACTGTAACTTCAGGGAG
*
68239588 ATAAGATTAATGGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGTCATGATAGAT
65 ATAAGATTAATGGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGATAGAT
* * *
68239653 TTGATCCGACCTACTACAACTTCAAAGGTATAGGACTTGGTGACTCCTAGCTTTAATCTGTTCCA
130 TTGACCCGACCTACTACAACTTCAAAGGTATAGGACTTGGTAACTCCTAACTTTAATCTGTTCCA
* * * *
68239718 CAGCAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTG
195 CAGCAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTG
*
68239758 TCCACTGCAACTTCAGGGAGATAAAACTTGTAACTTCAACCTCCTTCACTGTAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAAAACTTGTAACTTCAACCTCCTCCACTGTAACTTCAGGGAGA
* * * * * * *
68239823 TAAGGTTAATGGTTTCCATTTGCTCCATTGTAACTTTAGGGAGATAAGATTTGCCATGATAGATT
66 TAAGATTAATGGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGATAGATT
* * * * *
68239888 TGACCCGACCTACTGCAATTTCAGAGGTATAGGACTT-GTAACTCGTAATTTTAATCTGTTCCAC
131 TGACCCGACCTACTACAACTTCAAAGGTATAGGACTTGGTAACTCCTAACTTTAATCTGTTCCAC
* *
68239952 TGTAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTG
196 AGCAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTG
* * * * *
68239991 CTTCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAGCTTCAGGGAG
1 -TCCACTGCAACTTCAGGGAGATAAAACTTGTAACTTCAACCTCCTCCACTGTAACTTCAGGGAG
* * * * *
68240056 ATATGATTTGTAGCCTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
65 ATAAGA--T-TA--ATGGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAG
68240110 TTTATAGCTT
Statistics
Matches: 295, Mismatches: 51, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
233 56 0.19
234 194 0.66
235 10 0.03
236 1 0.00
237 2 0.01
239 32 0.11
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (234 bp):
TCCACTGCAACTTCAGGGAGATAAAACTTGTAACTTCAACCTCCTCCACTGTAACTTCAGGGAGA
TAAGATTAATGGCTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGATAGATT
TGACCCGACCTACTACAACTTCAAAGGTATAGGACTTGGTAACTCCTAACTTTAATCTGTTCCAC
AGCAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTG
Found at i:68240042 original size:44 final size:43
Alignment explanation
Indices: 68239940--68240342 Score: 214
Period size: 44 Copynumber: 8.8 Consensus size: 43
68239930 TCGTAATTTT
* * * *
68239940 AATCTGTTCCACTGTAACTTCAAGGAAATAAGATTCGCTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-G-TAACTTC
* *
68239985 AGTCTGCTTCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTAACTTC
* * * *
68240029 AACCTGCTCCACTGCAGCTTCAGGGAGATATGATTTGTAGCCTGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTA-----ACTTC
* * * *
68240078 AATCTGCTCCACTGCAACTTCAGGGAGATAAGTTTATAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTAACTTC
* * * **
68240121 AATTTGCTCTATTGCAACTTCAGAAAGATAA-ATTTTCCATGATAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA---T---TG-TAACTTC
* * * * **
68240170 GATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTAACTTC
* *** *
68240214 AATTTGCTTGGCTGCAACTTTAGGGAGATAAGATTCGCCATGGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T-----T-GTAACTTC
* * * * * **
68240264 AATATGCTCTACTGTAACTTTAGGGAGATAAAATTTGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTAACTTC
* * *
68240308 AATCTACTCCACTGCAACTTTAAGGAGATAAGATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
68240343 CGCCATAATT
Statistics
Matches: 278, Mismatches: 60, Indels: 42
0.73 0.16 0.11
Matches are distributed among these distances:
43 31 0.11
44 107 0.38
45 32 0.12
46 2 0.01
48 7 0.03
49 63 0.23
50 36 0.13
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTAACTTC
Found at i:68240283 original size:94 final size:93
Alignment explanation
Indices: 68240074--68240348 Score: 320
Period size: 94 Copynumber: 2.9 Consensus size: 93
68240064 TGTAGCCTGT
* * * * * * *
68240074 CTTCAATCTGCTCCACTGCAACTTCAGGGAGAT-AAGTTTATAGCTTTAATTTGCTCTATTGCAA
1 CTTCAATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTCAATTTGCT-TACTGCAA
* ** **
68240138 CTTCAGAAAGATAA-ATTTTCCATGATAA
65 CTTTAGGGAGATAAGATTCGCCATGATAA
* *
68240166 CTTCGATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTCAATTTGCTTGGCTGCAA
1 CTTCAATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTCAATTTGCTT-ACTGCAA
*
68240231 CTTTAGGGAGATAAGATTCGCCATGGTAA
65 CTTTAGGGAGATAAGATTCGCCATGATAA
* * * * *
68240260 CTTCAATATGCTCTACTGTAACTTTAGGGAGATAAAATTTGTGGCTTCAATCTACTCCACTGCAA
1 CTTCAATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTCAATTTGCT-TACTGCAA
*
68240325 CTTTAAGGAGATAAGATTCGCCAT
65 CTTTAGGGAGATAAGATTCGCCAT
68240349 AATTTGTAGC
Statistics
Matches: 156, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
92 31 0.20
93 34 0.22
94 91 0.58
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (93 bp):
CTTCAATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTCAATTTGCTTACTGCAAC
TTTAGGGAGATAAGATTCGCCATGATAA
Found at i:68259847 original size:110 final size:106
Alignment explanation
Indices: 68259715--68259912 Score: 333
Period size: 110 Copynumber: 1.8 Consensus size: 106
68259705 TCTCTGACAT
68259715 TAACTGTTAGATCGACTTAGATCTAAGGTATATTCTACTCATCGATGGGTATTGATCCATGCACC
1 TAACTGTTAGATCGACTTAGATCTAAGGTATATTCTACTCATCGATGGGTATTGAT-C---CACC
68259780 ATGCCAATCTTCGAATCATCGCTTGAATTCTTTGATCTCCAACAC
62 ATGCCAATCTTCGAATCATCGCTTGAATTCTTTGATCTCCAACAC
* *
68259825 TAACTGTTAGATCGACTTAGATCTAAGGTATCTTCTACTCATCGATGGGTATTGATCCACCGTGC
1 TAACTGTTAGATCGACTTAGATCTAAGGTATATTCTACTCATCGATGGGTATTGATCCACCATGC
*
68259890 CAATCTTCGAATCGTCGCTTGAA
66 CAATCTTCGAATCATCGCTTGAA
68259913 GCTCACTAGC
Statistics
Matches: 85, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
106 29 0.34
109 1 0.01
110 55 0.65
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.33
Consensus pattern (106 bp):
TAACTGTTAGATCGACTTAGATCTAAGGTATATTCTACTCATCGATGGGTATTGATCCACCATGC
CAATCTTCGAATCATCGCTTGAATTCTTTGATCTCCAACAC
Found at i:68260634 original size:29 final size:29
Alignment explanation
Indices: 68260600--68260668 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 29
68260590 ACAAAAAAAA
68260600 TCATGTATAAGATCGCACA-AAATCAAAGT
1 TCATGTATAA-ATCGCACACAAATCAAAGT
* **
68260629 TCATGTATGAAATTGCACATCGGATCAAAGT
1 TCATGTAT-AAATCGCACA-CAAATCAAAGT
68260660 TCATGTATA
1 TCATGTATA
68260669 GTTATTTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 15 0.44
30 3 0.09
31 16 0.47
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (29 bp):
TCATGTATAAATCGCACACAAATCAAAGT
Found at i:68261033 original size:13 final size:13
Alignment explanation
Indices: 68261015--68261041 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
68261005 AATTAGTTGC
68261015 TAATTTTGATTTT
1 TAATTTTGATTTT
68261028 TAATTTTGATTTT
1 TAATTTTGATTTT
68261041 T
1 T
68261042 CAGACTATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (13 bp):
TAATTTTGATTTT
Found at i:68261965 original size:18 final size:18
Alignment explanation
Indices: 68261914--68261965 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 18
68261904 GAACATTGGT
68261914 TTATTAT-TATTATTATAA
1 TTATTATATATTATT-TAA
68261932 TT-TT-TAT-TTAATTTAA
1 TTATTATATATT-ATTTAA
68261948 TTATTATATATTATTTAA
1 TTATTATATATTATTTAA
68261966 ATCAGGTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
16 8 0.28
17 8 0.28
18 11 0.38
19 2 0.07
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTATTATATATTATTTAA
Found at i:68265676 original size:81 final size:81
Alignment explanation
Indices: 68265541--68265704 Score: 294
Period size: 81 Copynumber: 2.0 Consensus size: 81
68265531 TCATCCAATC
* *
68265541 AATAGGTCTTTTTCTAGGTTGTAATGGTGCTAGGCTAAAGGTAGGAATAAAGAGAAGTGATTTTT
1 AATAGGTCTTTTACTAGGTTGTAATGGTGCTAGGCTAAAGATAGGAATAAAGAGAAGTGATTTTT
68265606 AGGTTCAAAACATCTT
66 AGGTTCAAAACATCTT
68265622 AATAGGTCTTTTACTAGGTTGTAATAGG-GCTAGGCTAAAGATAGGAATAAAGAGAAGTGATTTT
1 AATAGGTCTTTTACTAGGTTGTAAT-GGTGCTAGGCTAAAGATAGGAATAAAGAGAAGTGATTTT
68265686 TAGGTTCAAAACATCTT
65 TAGGTTCAAAACATCTT
68265703 AA
1 AA
68265705 CCCTAACTTT
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
81 78 0.98
82 2 0.03
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.33
Consensus pattern (81 bp):
AATAGGTCTTTTACTAGGTTGTAATGGTGCTAGGCTAAAGATAGGAATAAAGAGAAGTGATTTTT
AGGTTCAAAACATCTT
Found at i:68265806 original size:3 final size:3
Alignment explanation
Indices: 68265798--68265829 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
68265788 CATGCTCATC
*
68265798 TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
68265830 TTCACATGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:68266689 original size:17 final size:18
Alignment explanation
Indices: 68266667--68266701 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
68266657 GATATGATAC
*
68266667 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
68266684 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
68266702 CAGGAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:68266981 original size:22 final size:21
Alignment explanation
Indices: 68266946--68267021 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
68266936 AAAAGGTATC
* *
68266946 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
68266967 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
68266990 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
68267009 TGC-AATCATATCT
1 TACAAATCATATCT
68267022 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:68267038 original size:35 final size:37
Alignment explanation
Indices: 68266975--68267053 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
68266965 ATTACAAAAT
68266975 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
68267011 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
68267046 CATATCAT
1 CATATCAT
68267054 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:68267051 original size:14 final size:15
Alignment explanation
Indices: 68266996--68267051 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
68266986 AGATTGCATA
68266996 TCATATCTAAGATTG
1 TCATATCTAAGATTG
68267011 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
68267029 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
68267046 -CATATC
1 TCATATC
68267052 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:68267061 original size:17 final size:19
Alignment explanation
Indices: 68266982--68267053 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
68266972 AATCATATCT
68266982 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
68267001 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
68267019 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
68267036 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
68267054 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:68267207 original size:21 final size:20
Alignment explanation
Indices: 68267168--68267208 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
68267158 TGAACTTGGA
**
68267168 ATTTTTTTTTTGGGTTTATT
1 ATTTTTTTTTTGGACTTATT
68267188 ATTTTTGTTTTTGGACTTATT
1 ATTTTT-TTTTTGGACTTATT
68267209 TCTGGGCCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.02, G:0.15, T:0.71
Consensus pattern (20 bp):
ATTTTTTTTTTGGACTTATT
Found at i:68267455 original size:44 final size:45
Alignment explanation
Indices: 68267401--68267599 Score: 249
Period size: 44 Copynumber: 4.5 Consensus size: 45
68267391 GGAAGGTGAT
* * **
68267401 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACG-CTT
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
68267445 TTTTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
68267490 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
68267534 ATCTGTTAACTTCGATTTGCTCACCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
68267579 ATCTGTCATCTTGGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
68267600 TCGATGTAAA
Statistics
Matches: 133, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
44 78 0.59
45 55 0.41
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:68267561 original size:89 final size:89
Alignment explanation
Indices: 68267401--68267583 Score: 251
Period size: 89 Copynumber: 2.1 Consensus size: 89
68267391 GGAAGGTGAT
** *** * *
68267401 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCTTTTTTGTTATCTTCGATCTGCT
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCAAATCTGTTAACTTCGATCTGCT
*
68267466 CCCCGTCTAATACAGAGACGCCAA
66 CACCGTCTAATACAGAGACGCCAA
* *
68267490 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTAACTTCGATTTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACG-CAAATCTGTTAACTTCGATCTGC
*
68267554 TCACCGTCTAATACAGAGATGCCAA
65 TCACCGTCTAATACAGAGACGCCAA
68267579 ATCTG
1 ATCTG
68267584 TCATCTTGGA
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
88 30 0.37
89 52 0.63
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.32
Consensus pattern (89 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCAAATCTGTTAACTTCGATCTGCT
CACCGTCTAATACAGAGACGCCAA
Found at i:68275771 original size:17 final size:18
Alignment explanation
Indices: 68275749--68275783 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
68275739 GATATGATAC
*
68275749 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
68275766 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
68275784 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:68276072 original size:22 final size:21
Alignment explanation
Indices: 68276037--68276112 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
68276027 AAAAGGTATC
* *
68276037 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
68276058 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
68276081 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
68276100 TGC-AATCATATCT
1 TACAAATCATATCT
68276113 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:68276129 original size:35 final size:37
Alignment explanation
Indices: 68276066--68276144 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
68276056 ATTACAAAAT
68276066 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
68276102 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
68276137 CATATCAT
1 CATATCAT
68276145 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:68276142 original size:14 final size:15
Alignment explanation
Indices: 68276087--68276142 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
68276077 AGATTGCATA
68276087 TCATATCTAAGATTG
1 TCATATCTAAGATTG
68276102 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
68276120 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
68276137 -CATATC
1 TCATATC
68276143 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:68276152 original size:17 final size:19
Alignment explanation
Indices: 68276073--68276144 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
68276063 AATCATATCT
68276073 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
68276092 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
68276110 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
68276127 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
68276145 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:68280542 original size:48 final size:48
Alignment explanation
Indices: 68280448--68280814 Score: 226
Period size: 48 Copynumber: 7.8 Consensus size: 48
68280438 ATTGTGTGCT
*
68280448 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACATT--ATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CA-TTTAGATGAGAGCC
*
68280494 AGTGTAAGACCATGTCTGGGACATGGCATCAACATTTAGATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTTAGATGAGAGCC
* * * **
68280542 AGTGTAAGA-CATGTTTGGGACAT-GCATTGGCATCGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTTAGATG-AGAGCC
* * * *
68280588 AGTATATGA-CATGTCTGGGACAT-GCATCGGC---TACGA-GATATGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTTA-GATGAGA-GCC
* * * ** *
68280632 AGTGTAAGACCATGCCGGGGACATGGCATAGGCACGGTTATG-TGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCAT-CG-ACATTTA-GATGAGAGCC
* * ** * ** ** * *
68280682 AGTATAAGACCATGTCTAGGACATGGTGTCGACCTCGATTCTGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTTA-GATGAGAGCC
* * *
68280731 AGTGGAAGACTATGTCCGGGACATGGCATCGAC-TTT-GATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTTAGAT-GA-GAGCC
* *
68280779 AATGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATT
68280815 ATACCCTATG
Statistics
Matches: 246, Mismatches: 55, Indels: 37
0.73 0.16 0.11
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 12 0.05
45 12 0.05
46 59 0.24
47 33 0.13
48 61 0.25
49 34 0.14
50 25 0.10
51 6 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTTAGATGAGAGCC
Found at i:68280625 original size:46 final size:46
Alignment explanation
Indices: 68280448--68280656 Score: 196
Period size: 46 Copynumber: 4.5 Consensus size: 46
68280438 ATTGTGTGCT
*
68280448 AGTGTAAGACATGTCTGGGACATGCATCGACCA-C-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGA-CATCGA-GATGAGAGCC
* **
68280494 AGTGTAAGACCATGTCTGGGACATGGCATCAACATTTAGATGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACATCGAGATGAGAGCC
* * *
68280542 AGTGTAAGACATGTTTGGGACATGCATTGGCATCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACATCGAGATG-AGAGCC
* * * *
68280588 AGTATATGACATGTCTGGGACATGCATCGGC-TACGAGAT-A-TGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACAT-CGAGATGAGAGCC
* *
68280632 AGTGTAAGACCATGCCGGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
68280657 GCATAGGCAC
Statistics
Matches: 138, Mismatches: 18, Indels: 15
0.81 0.11 0.09
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 58 0.42
47 30 0.22
48 24 0.17
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATCGAGATGAGAGCC
Found at i:68288230 original size:47 final size:47
Alignment explanation
Indices: 68288120--68288397 Score: 198
Period size: 47 Copynumber: 5.8 Consensus size: 47
68288110 TTAATTGTGT
* *
68288120 GCTAGTGTAAGA-CATGTCTGCGACAT-GCATCGGCGACA-TT-ATAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT---CGACATTTGATGAGA
* * * *
68288166 GCCACTATAAGACCATGTCTAGGACATGGCATCGACATTTAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTT-GATGAGA
* * *
68288214 GCTAGTGTAAGA-CATGTTTGGGACATGGCTTCGGCACGGATATG-TGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-AC--ATTTGATGAGA
* * * * *
68288263 ACTAGTATAAGACCATGTCTGGGACATGGCGTCGACCTATATT-TTGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-AT-TTGATGAGA
*
68288312 G-TCAGTGTAAGACTATGTCTGGGACATGGCATCGAC--TTGATGGATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACATTTGAT-GA-GA
** *
68288359 GCCGGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATT
68288398 ATACCTTATG
Statistics
Matches: 182, Mismatches: 30, Indels: 37
0.73 0.12 0.15
Matches are distributed among these distances:
44 2 0.01
45 6 0.03
46 13 0.07
47 61 0.34
48 24 0.13
49 54 0.30
50 19 0.10
51 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTTGATGAGA
Found at i:68291625 original size:43 final size:43
Alignment explanation
Indices: 68291560--68291725 Score: 169
Period size: 43 Copynumber: 3.9 Consensus size: 43
68291550 AGCTCGTATA
* * * *
68291560 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATAT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCACATATACG
* *
68291602 ATGCCACTGTCCCAGACAGGGTCTTACACGAATCA-ATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAATCACATATACG
* *
68291644 ATGCCAATGTCCCAGACATGGTCTTACACGTAGTCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCACATATACG
* * * *
68291687 ATTCCAATGTCTCAAACATGGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCACAT
68291726 CTCAATAACC
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
41 4 0.04
42 39 0.38
43 60 0.58
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAATCACATATACG
Found at i:68291711 original size:85 final size:84
Alignment explanation
Indices: 68291560--68291714 Score: 188
Period size: 85 Copynumber: 1.8 Consensus size: 84
68291550 AGCTCGTATA
* * * * *
68291560 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGACAGGGTC
1 ATGCCATATCCCAGACATGGTCTTACACGTTATCACATATCAATGCCAATGTCCCAAACAGGGTC
68291625 TTACACGAATCAATATACG
66 TTACACGAATCAATATACG
* * * *
68291644 ATGCCAATGTCCCAGACATGGTCTTACACG-TAGTCACA-ATACAATTCCAATGTCTCAAACATG
1 ATGCC-ATATCCCAGACATGGTCTTACACGTTA-TCACATAT-CAATGCCAATGTCCCAAACAGG
68291707 GTCTTACA
63 GTCTTACA
68291715 TGTAATCACA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
84 9 0.15
85 50 0.85
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.27
Consensus pattern (84 bp):
ATGCCATATCCCAGACATGGTCTTACACGTTATCACATATCAATGCCAATGTCCCAAACAGGGTC
TTACACGAATCAATATACG
Found at i:68301962 original size:13 final size:13
Alignment explanation
Indices: 68301944--68301972 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
68301934 TTCTTAATTC
68301944 CTCACAAGTGTAT
1 CTCACAAGTGTAT
68301957 CTCACAAGTGTAT
1 CTCACAAGTGTAT
68301970 CTC
1 CTC
68301973 TCAGTTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (13 bp):
CTCACAAGTGTAT
Found at i:68303781 original size:130 final size:133
Alignment explanation
Indices: 68303476--68303869 Score: 392
Period size: 130 Copynumber: 3.0 Consensus size: 133
68303466 CTCGCCTTGG
** * * * * * * * *
68303476 AAAACATGAGTGAAGTTCC-AATGGAACATTCGATCATTTTGAAGAAACGGGGAACCGCAGCCCA
1 AAAACATGAGTGAA-AACCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCCA
** * * **
68303540 GCACGATAGGGCACGATTCCTTGAATTGCCAAACATCGAACATTACCTTCGTTTTGGAGAAATTT
65 GCACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACCTTCGTTTTAAAGAAA-TT
68303605 TTTTA
129 TTTTA
* * ** *
68303610 AAAACATGAGTGAAAACCTAAAGGAATATTCAACTGCTTTGAACCAACGAGAAATCGCAACCCAG
1 AAAACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAG
*
68303675 CACGATAGGGCACGATTCC-CGAATTGCCAAATATCGAACATCACCTTTG-TTTAAAG-AA-TTT
66 CACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACCTTCGTTTTAAAGAAATTTT
68303736 TTA
131 TTA
* * * * *
68303739 AAAGACATGGGTG-AAACTCTAAAGGGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCC
1 AAA-ACATGAGTGAAAAC-CTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCC
* * * *
68303803 AACACGTTAGGGCACGATTCCGCGAATTGCCAAATATC-AA-ATCTCGTCTTCATTTTAAAG-AA
64 AGCACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCAC--CTTCGTTTTAAAGAAA
68303865 TTTTT
127 TTTTT
68303870 AAATGAATAA
Statistics
Matches: 216, Mismatches: 36, Indels: 17
0.80 0.13 0.06
Matches are distributed among these distances:
129 17 0.08
130 66 0.31
131 21 0.10
132 14 0.06
133 32 0.15
134 66 0.31
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (133 bp):
AAAACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAG
CACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACCTTCGTTTTAAAGAAATTTT
TTA
Found at i:68305680 original size:55 final size:54
Alignment explanation
Indices: 68305602--68305714 Score: 124
Period size: 55 Copynumber: 2.1 Consensus size: 54
68305592 ATATATATAT
** * *
68305602 TTTTATTATTTGTTTATTTTAATTTTACTTTTA-TATTA-TATATTATA-AAATTA
1 TTTTATTATGAGTTTATTTTAATTATA-TATTAGTATTACT-TATTATATAAATTA
*
68305655 TTTTATTATGAGTATTATTTTTAATTATATATTAGTATTACTTATTATATATATTA
1 TTTTATTATGAGT-TTA-TTTTAATTATATATTAGTATTACTTATTATATAAATTA
68305711 TTTT
1 TTTT
68305715 CCTTAAATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
53 11 0.22
54 7 0.14
55 22 0.44
56 10 0.20
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.63
Consensus pattern (54 bp):
TTTTATTATGAGTTTATTTTAATTATATATTAGTATTACTTATTATATAAATTA
Found at i:68305876 original size:18 final size:19
Alignment explanation
Indices: 68305853--68305900 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
68305843 ATATAATCTT
68305853 TATTATGTT-TTATTTTTA
1 TATTATGTTATTATTTTTA
*
68305871 TATTAT-TTATTGTTTTTA
1 TATTATGTTATTATTTTTA
68305889 TATATATGTTAT
1 TAT-TATGTTAT
68305901 GTATATCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 2 0.08
18 17 0.65
19 3 0.12
20 4 0.15
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (19 bp):
TATTATGTTATTATTTTTA
Found at i:68306497 original size:21 final size:21
Alignment explanation
Indices: 68306458--68306498 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
68306448 TTTTTTTGCT
68306458 TCGTATGTATTATTCTTTATA
1 TCGTATGTATTATTCTTTATA
*
68306479 TCGTA-GTATTCATTTTTTAT
1 TCGTATGTATT-ATTCTTTAT
68306499 CTACCTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.10, G:0.10, T:0.59
Consensus pattern (21 bp):
TCGTATGTATTATTCTTTATA
Found at i:68318098 original size:119 final size:119
Alignment explanation
Indices: 68317887--68318338 Score: 703
Period size: 119 Copynumber: 3.8 Consensus size: 119
68317877 TGAAGACAGT
* *
68317887 AGATCTAGA-CTTCAGACATTTATGCTGAAGCAGATCCAAGTTGATTTGGTATTCTTGTGTTTAC
1 AGATCTA-ACCTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
* *
68317951 AAGAAACAAATCGAGGACATAGCAGATTTGACTCTTAGACATTTTCAAATATAGC
65 AAGAAACAAATCGAAGACATAGCAGATTTGACTCTTAGACATTCTCAAATATAGC
* *
68318006 AGATCTAGA-CTTCAGACATTTATGCTGAAGTAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 AGATCTA-ACCTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
* * *
68318070 AAGGAACAAATCGAAGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAGC
65 AAGAAACAAATCGAAGACATAGCAGATTTGACTCTTAGACATTCTCAAATATAGC
**
68318125 AGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACA
1 AGATCTAACCTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACA
* *
68318190 AGAAACAAATCG-AGAACATAGTAGATTTGACTCTTAGACATTCTCAAATATAAC
66 AGAAACAAATCGAAG-ACATAGCAGATTTGACTCTTAGACATTCTCAAATATAGC
**
68318244 AGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACA
1 AGATCTAACCTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACA
* *
68318309 AGGAACAAATCGAGGACATAGCAGATTTGA
66 AGAAACAAATCGAAGACATAGCAGATTTGA
68318339 TTCTCAAATG
Statistics
Matches: 311, Mismatches: 19, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
118 3 0.01
119 307 0.99
120 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (119 bp):
AGATCTAACCTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACA
AGAAACAAATCGAAGACATAGCAGATTTGACTCTTAGACATTCTCAAATATAGC
Found at i:68318391 original size:83 final size:83
Alignment explanation
Indices: 68318280--68318630 Score: 522
Period size: 83 Copynumber: 4.2 Consensus size: 83
68318270 GAAGCAGATC
* * * * * * *
68318280 CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGATTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTAGCAGATATGACTCTCA
*
68318345 AATGTTCTCAAACAGTCT
66 AATGTTCTCAAACAGACT
*
68318363 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACGTAGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTAGCAGATATGACTCTCA
*
68318428 AATGTTCTTAAACAGACT
66 AATGTTCTCAAACAGACT
* *
68318446 TAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAGGACGTAGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTAGCAGATATGACTCTCA
*
68318511 AATATTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
68318529 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGGATGTAGCAGATTTGACTCACA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTAGCAGATATGACTCTCA
68318594 AATGTTCTCAAAACAGACT
66 AATGTTCTC-AAACAGACT
* *
68318613 CAAGTTGATTTGGCATCC
1 CAAGATGGTTTGGCATCC
68318631 CCACAAATCG
Statistics
Matches: 243, Mismatches: 24, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
83 218 0.90
84 25 0.10
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTAGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:68320094 original size:3 final size:3
Alignment explanation
Indices: 68320082--68320231 Score: 56
Period size: 3 Copynumber: 50.7 Consensus size: 3
68320072 AGTCCTATAT
68320082 TTA TTA -TA TTA TTA TATA TATA TT- TTA TTA TT- TGT- TTA TT- TTAA
1 TTA TTA TTA TTA TTA T-TA T-TA TTA TTA TTA TTA T-TA TTA TTA TT-A
** *
68320126 TT- TTA CTT- TTA -TA TTA TATA TTA -TA AAA TTA TT- TTA TTA TGA
1 TTA TTA -TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* *
68320168 GTA TTA TTT TTAA TTA TATA TTA TTA TTA CTTA TTA -TA TATA TTA TT-
1 TTA TTA TTA TT-A TTA T-TA TTA TTA TTA -TTA TTA TTA T-TA TTA TTA
*
68320215 TTA CTTA -AA TTA TTA TT
1 TTA -TTA TTA TTA TTA TT
68320232 TTACATCTCT
Statistics
Matches: 114, Mismatches: 11, Indels: 44
0.67 0.07 0.26
Matches are distributed among these distances:
2 23 0.20
3 63 0.55
4 28 0.25
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:68320189 original size:17 final size:18
Alignment explanation
Indices: 68320169--68320231 Score: 60
Period size: 17 Copynumber: 3.6 Consensus size: 18
68320159 TTATTATGAG
*
68320169 TATTATTTTTAATTA-TA
1 TATTATTATTAATTATTA
*
68320186 TATTATTATTACTTATTA
1 TATTATTATTAATTATTA
68320204 TATATATTATT--TTACTTA
1 TAT-TATTATTAATTA-TTA
*
68320222 AATTATTATT
1 TATTATTATT
68320232 TTACATCTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
17 23 0.57
18 10 0.25
19 7 0.17
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTATTATTAATTATTA
Found at i:68320291 original size:22 final size:22
Alignment explanation
Indices: 68320266--68320340 Score: 62
Period size: 22 Copynumber: 3.2 Consensus size: 22
68320256 TATTTTCACA
68320266 TATATTATATTTATTAATTACT
1 TATATTATATTTATTAATTACT
*
68320288 TATA-TATATTGTTTTATACGTTACTT
1 TATATTATATT-TATTA-A--TTAC-T
* * *
68320314 TATATTATATCTATTATTTTCT
1 TATATTATATTTATTAATTACT
68320336 TATAT
1 TATAT
68320341 GTTTATATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
21 6 0.14
22 14 0.33
23 4 0.10
25 4 0.10
26 9 0.21
27 5 0.12
ACGTcount: A:0.31, C:0.07, G:0.03, T:0.60
Consensus pattern (22 bp):
TATATTATATTTATTAATTACT
Found at i:68320305 original size:48 final size:46
Alignment explanation
Indices: 68320244--68320340 Score: 106
Period size: 48 Copynumber: 2.1 Consensus size: 46
68320234 ACATCTCTTT
** *
68320244 TATATATTGTTATATTTTCAC-ATATATTATATTTATTAATTACTTA
1 TATATATTGTTATACGTT-ACTATATATTATATCTATTAATTACTTA
* * *
68320290 TATATATTGTTTTATACGTTACTTTATATTATATCTATTATTTTCTTA
1 TATATATTG--TTATACGTTACTATATATTATATCTATTAATTACTTA
68320338 TAT
1 TAT
68320341 GTTTATATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
46 9 0.21
47 2 0.05
48 31 0.74
ACGTcount: A:0.31, C:0.07, G:0.03, T:0.59
Consensus pattern (46 bp):
TATATATTGTTATACGTTACTATATATTATATCTATTAATTACTTA
Found at i:68320393 original size:18 final size:20
Alignment explanation
Indices: 68320370--68320418 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
68320360 ATATAATCTT
68320370 TATTATGTT-TT-ATTTTTA
1 TATTATGTTATTGATTTTTA
*
68320388 TATTAT-TTATTGTTTTTTA
1 TATTATGTTATTGATTTTTA
68320407 TATATATGTTAT
1 TAT-TATGTTAT
68320419 GTATATCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 2 0.08
18 8 0.31
19 9 0.35
20 3 0.12
21 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.69
Consensus pattern (20 bp):
TATTATGTTATTGATTTTTA
Found at i:68321004 original size:21 final size:21
Alignment explanation
Indices: 68320966--68321005 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
68320956 TTTTTTGCTT
68320966 CGTATGTATTATTCTTTATAC
1 CGTATGTATTATTCTTTATAC
*
68320987 CGTA-GTATTCATTTTTTAT
1 CGTATGTATT-ATTCTTTAT
68321006 CTACCTAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.12, G:0.10, T:0.55
Consensus pattern (21 bp):
CGTATGTATTATTCTTTATAC
Found at i:68328925 original size:21 final size:20
Alignment explanation
Indices: 68328901--68328943 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
68328891 TAAATGATGG
68328901 TATTAGAAATATACGATATAA
1 TATTAGAAATATAC-ATATAA
* *
68328922 TATTAGAAGTATACATGTAA
1 TATTAGAAATATACATATAA
68328942 TA
1 TA
68328944 GTATATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.35
Consensus pattern (20 bp):
TATTAGAAATATACATATAA
Found at i:68329011 original size:26 final size:25
Alignment explanation
Indices: 68328964--68329051 Score: 79
Period size: 26 Copynumber: 3.4 Consensus size: 25
68328954 AATATAACTA
*
68328964 ATAATATTAAAAAATATGTATAAAAT
1 ATAATATTAAAAAAT-TATATAAAAT
*
68328990 ATAATATTAAAAAACTTATATACATAAC
1 ATAATATTAAAAAA-TTATATA-A-AAT
* * * *
68329018 AT-ATATAAAAAAAATACATATAAT
1 ATAATATTAAAAAATTATATAAAAT
68329042 ATAATATTAA
1 ATAATATTAA
68329052 GACATTTACA
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
24 4 0.08
25 6 0.12
26 24 0.48
27 12 0.24
28 4 0.08
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.33
Consensus pattern (25 bp):
ATAATATTAAAAAATTATATAAAAT
Found at i:68329108 original size:12 final size:12
Alignment explanation
Indices: 68329091--68329122 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
68329081 AAATAACATC
68329091 TAATAATATTAA
1 TAATAATATTAA
68329103 TAATAATATTAA
1 TAATAATATTAA
*
68329115 AAATAATA
1 TAATAATA
68329123 ATGAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:68329299 original size:21 final size:22
Alignment explanation
Indices: 68329262--68329304 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
68329252 TCATTAGTAA
68329262 TAATAATACTTAAAAAAATAAT
1 TAATAATACTTAAAAAAATAAT
68329284 TAAT-ATA-TTAATAAAAATAAT
1 TAATAATACTTAA-AAAAATAAT
68329305 AGTGACAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
TAATAATACTTAAAAAAATAAT
Found at i:68329801 original size:20 final size:20
Alignment explanation
Indices: 68329773--68329822 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
68329763 AAAAAAAGAA
68329773 GAGGAGGGAGAGAAAAGA-GG
1 GAGG-GGGAGAGAAAAGAGGG
* *
68329793 GAGCGGGGAAAGAAGAGAGGG
1 GAG-GGGGAGAGAAAAGAGGG
68329814 GAGGGGGAG
1 GAGGGGGAG
68329823 CTTCGGCCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 19 0.76
21 6 0.24
ACGTcount: A:0.38, C:0.02, G:0.60, T:0.00
Consensus pattern (20 bp):
GAGGGGGAGAGAAAAGAGGG
Found at i:68334442 original size:47 final size:47
Alignment explanation
Indices: 68334373--68334466 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
68334363 CATTAGCAAG
68334373 ACCGAATTGTTGAACCCAAAGGAACTAAAAGTACTATTAATTACTTT
1 ACCGAATTGTTGAACCCAAAGGAACTAAAAGTACTATTAATTACTTT
68334420 ACCGAATTGTTGAACCCAAAGGAACTAAAAGTACTATTAATTACTTT
1 ACCGAATTGTTGAACCCAAAGGAACTAAAAGTACTATTAATTACTTT
68334467 CTTTTTATTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (47 bp):
ACCGAATTGTTGAACCCAAAGGAACTAAAAGTACTATTAATTACTTT
Found at i:68337235 original size:10 final size:11
Alignment explanation
Indices: 68337207--68337236 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
68337197 GTATTCAAAA
68337207 ATAAATAAAGG
1 ATAAATAAAGG
68337218 ATAAATAAAGG
1 ATAAATAAAGG
68337229 A-AAATAAA
1 ATAAATAAA
68337237 ATTAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.37
11 12 0.63
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (11 bp):
ATAAATAAAGG
Found at i:68337258 original size:13 final size:13
Alignment explanation
Indices: 68337229--68337268 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
68337219 TAAATAAAGG
*
68337229 AAAATAA-AATTA
1 AAAATAATAATAA
*
68337241 AAAATAGTAATAA
1 AAAATAATAATAA
68337254 AAAATAATAATAA
1 AAAATAATAATAA
68337267 AA
1 AA
68337269 TAAAGGGACT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (13 bp):
AAAATAATAATAA
Found at i:68343428 original size:10 final size:11
Alignment explanation
Indices: 68343400--68343429 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
68343390 GTATTCAAAA
68343400 ATAAATAAAGG
1 ATAAATAAAGG
68343411 ATAAATAAAGG
1 ATAAATAAAGG
68343422 A-AAATAAA
1 ATAAATAAA
68343430 ATTAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.37
11 12 0.63
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (11 bp):
ATAAATAAAGG
Found at i:68343451 original size:13 final size:13
Alignment explanation
Indices: 68343422--68343461 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
68343412 TAAATAAAGG
*
68343422 AAAATAA-AATTA
1 AAAATAATAATAA
*
68343434 AAAATAGTAATAA
1 AAAATAATAATAA
68343447 AAAATAATAATAA
1 AAAATAATAATAA
68343460 AA
1 AA
68343462 TAAAGGGACT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (13 bp):
AAAATAATAATAA
Found at i:68351353 original size:19 final size:20
Alignment explanation
Indices: 68351329--68351366 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68351319 GGTACCACCA
68351329 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
68351348 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
68351367 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:68351759 original size:46 final size:46
Alignment explanation
Indices: 68351591--68351763 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
68351581 AACCCGCCCC
* *** *
68351591 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
68351637 TAAATGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * * *
68351685 TCA-CGAAGTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
68351730 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68351764 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 56 0.57
47 26 0.26
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:68361429 original size:42 final size:42
Alignment explanation
Indices: 68361362--68361474 Score: 156
Period size: 42 Copynumber: 2.7 Consensus size: 42
68361352 TAATATACCA
* * * *
68361362 ATGCCATATCCCAGATATGATCTTACATGAGATCTCATATCG
1 ATGCCATAGCCCAGATATGGTCTTACACGAAATCTCATATCG
*
68361404 ATGCCAATAGCCCAGCTATGG-CTTACACGAAATCTCATATCG
1 ATGCC-ATAGCCCAGATATGGTCTTACACGAAATCTCATATCG
*
68361446 ATGCCATATCCCAGATATGGTCTTACACG
1 ATGCCATAGCCCAGATATGGTCTTACACG
68361475 TAAACTCTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
41 13 0.21
42 37 0.60
43 12 0.19
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:68375743 original size:19 final size:19
Alignment explanation
Indices: 68375719--68375809 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
68375709 AATCATATCT
*
68375719 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
68375738 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
68375756 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
68375773 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
68375792 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
68375810 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:68375777 original size:35 final size:37
Alignment explanation
Indices: 68375719--68375809 Score: 141
Period size: 35 Copynumber: 2.5 Consensus size: 37
68375709 AATCATATCT
*
68375719 TCTAAGATTGTATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
68375756 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
68375792 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
68375810 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.38
36 15 0.30
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:68375788 original size:14 final size:15
Alignment explanation
Indices: 68375733--68375788 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
68375723 AGATTGTATA
68375733 TCATATCTAAGATTG
1 TCATATCTAAGATTG
68375748 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
68375766 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
68375783 -CATATC
1 TCATATC
68375789 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:68377093 original size:207 final size:207
Alignment explanation
Indices: 68376478--68378225 Score: 2842
Period size: 207 Copynumber: 8.5 Consensus size: 207
68376468 GTCAAATCTT
* ** * *
68376478 CTATGT-TCTCGATTTGTTCCTTGTAAACACAAAAATGCCAAATCATCTTGGATC-TGCTTCAGC
1 CTATGTCT-TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGT
* *
68376541 ATAAACATCTGAAGGCCAGATATGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTT
65 ATAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTT
*
68376606 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACACGTG
130 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTG
68376671 AAAGCCAAATCAG
195 AAAGCCAAATCAG
* *
68376684 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCAAAACCATCTTGGATCTTGTTTCAGTA
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTA
* * * * * * *
68376749 TAAACATTTGAAGCCCAAATCTGCTA--TGTCTGTCCTCCATCGAATATAGAGACGCCAAACATT
66 TAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAAC-TT
68376812 -GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTG
130 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTG
68376876 AAAGCCAAATCAG
195 AAAGCCAAATCAG
* * *
68376889 TTATGTCTTCGACTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCATCAGTA
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTA
* *
68376954 TAAACATCTGAAGGCTAGATCTGCTATGTGTCAGCCCTCCGTCAAATATGGAGACGCCAAACTTC
66 TAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTC
* *
68377019 GATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAAAACGTGA
131 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGA
68377084 AAGCCAAATCAG
196 AAGCCAAATCAG
*
68377096 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATG-CAAACCATATTGGATCTTGCTTCAGTA
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTA
*
68377160 TAAACATCTGAAGGCTAGATCTGCTATGTGTCTTCCCTCCGTCGAATATGGAGACGCCAAACTTC
66 TAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTC
* * * * * *
68377225 TATTTGTTCTCTGACAATACAAATATTCCAAATCATCTTAGACTTGCTTAAATGTAAACACGTGA
131 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGA
68377290 AAGCCAAATCAG
196 AAGCCAAATCAG
* *
68377302 CTATGTGTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGATTCAGTA
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTA
* *
68377367 TAAACATCTGAAGGCTAGATCTGCTATGTGTCAGCCCTCCGTTGAATATGGAGACGCCAAACTTC
66 TAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTC
* * *
68377432 AATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAAAACGTGA
131 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGA
68377497 AAGCCAAATCAG
196 AAGCCAAATCAG
*
68377509 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATATTGGATCTTGCTTCAGTA
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTA
*
68377574 TAAACATCTGAAGGCTAGATCTGCTATGTGTCTTCCCTCCGTCGAATATGGAGACGCCAAACTTC
66 TAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTC
* * *
68377639 GATTTGTTCTCTGACAATACAAAGATTCCAAATCATCTTAGACTTGCTTAAACGTAAACACGTGA
131 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGA
68377704 AAGCCAAATCAG
196 AAGCCAAATCAG
* * * *
68377716 CTATGTGTTTGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGGCTTCAGTA
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTA
* * * *
68377781 TAAACATCTGAAGGCCAGATCTGCTATGTGTCTACCTTCCGTCGAATCTGGAGACGCCAAACTTC
66 TAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTC
* * *
68377846 AATTTGTTCTCTGACATTACAGAGATGCTAAATCATCTTAGACTTGCTTCAACGTAAACACGTGA
131 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGA
68377911 AAGCCAAATCAG
196 AAGCCAAATCAG
*
68377923 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTAGATCTTGCTTCAGTA
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTA
* *
68377988 TAAACATCTGAAGGATAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTC
66 TAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTC
* * *
68378053 AATTTGTTCTCTGACAATACAGAGATGCAAAATCATCTTAGACTTGCTTAAACGTAAACACGTGA
131 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGA
68378118 AAGCCAAATCAG
196 AAGCCAAATCAG
* * *
68378130 CTATGTGTTCGATTTGTTCCTTGTAAGTACAAGGATGCCAAACCATCTTAGATCTTGCTTCAGTA
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTA
* *
68378195 TAAACATCTGAAGGCCAGATCTACTATGTGT
66 TAAACATCTGAAGGCTAGATCTGCTATGTGT
68378226 TCGATTTGTT
Statistics
Matches: 1430, Mismatches: 105, Indels: 13
0.92 0.07 0.01
Matches are distributed among these distances:
205 189 0.13
206 243 0.17
207 998 0.70
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (207 bp):
CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTA
TAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTC
GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGA
AAGCCAAATCAG
Found at i:68378226 original size:88 final size:88
Alignment explanation
Indices: 68378076--68378313 Score: 329
Period size: 88 Copynumber: 2.7 Consensus size: 88
68378066 ACAATACAGA
* * * *** *
68378076 GATGCAAAATCATCTTAGA-CTTGCTTAAACGTAAACA-CGTGAAAGCCAAATC-AGCTATGTGT
1 GATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACATC-TGAAAGCCAGATCTA-CTATGTGT
*
68378138 TCGATTTGTTCCTTGTAAGTACAAG
64 TCGATTTGTTCCTTGTAAGCACAAG
*
68378163 GATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTGTTC
1 GATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACATCTGAAAGCCAGATCTACTATGTGTTC
*
68378228 GATTTGTTTCTTGTAAGCACAAG
66 GATTTGTTCCTTGTAAGCACAAG
* *
68378251 GATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAAGCCAGATCTGCTATGTGT
1 GATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACATCTGAAAGCCAGATCTACTATGTGT
68378314 CTGCCCTCCG
Statistics
Matches: 135, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
87 17 0.13
88 116 0.86
89 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.31
Consensus pattern (88 bp):
GATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACATCTGAAAGCCAGATCTACTATGTGTTC
GATTTGTTCCTTGTAAGCACAAG
Found at i:68378286 original size:295 final size:295
Alignment explanation
Indices: 68377869--68378520 Score: 1022
Period size: 295 Copynumber: 2.2 Consensus size: 295
68377859 ACATTACAGA
* * ** * * *
68377869 GATGCTAAATCATCTTAGA-CTTGCTTCAACGTAAACA-CGTGAAAGCCAAATC-AGCTATGTCT
1 GATGCCAAACCATCTTAGATCTTGCTTCAATATAAACATC-TGAAGGCCAGATCTA-CTATGTGT
68377931 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACATC
64 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACATC
* *
68377996 TGAAGGATAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCAATTTGTT
129 TGAAAGACAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCAATTTGTT
68378061 CTCTGACAATACAGAGATGCAAAATCATCTTAGACTTGCTTAAACGTAAACACGTGAAAGCCAAA
194 CTCTGACAATACAGAGATGCAAAATCATCTTAGACTTGCTTAAACGTAAACACGTGAAAGCCAAA
* *
68378126 TCAGCTATGTGTTCGATTTGTTCCTTGTAAGTACAAG
259 TCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAG
*
68378163 GATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTGTTC
1 GATGCCAAACCATCTTAGATCTTGCTTCAATATAAACATCTGAAGGCCAGATCTACTATGTGTTC
* *
68378228 GATTTGTTTCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTG
66 GATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACATCTG
* * ** * *
68378293 AAAGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGTTAAACTTTAATTTTTTCT
131 AAAGACAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCAATTTGTTCT
* * *
68378358 CTGACAATACAGAGATGCCAAATTATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATC
196 CTGACAATACAGAGATGCAAAATCATCTTAGACTTGCTTAAACGTAAACACGTGAAAGCCAAATC
*
68378423 AGCTATGTCTTCGATTTGTTCCTTGTAAGCACACG
261 AGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAG
* * *
68378458 GATGCCAAACCATCTTGGATCTTACTTCAATATAAACATCTGAAGGCCAGATCTGCTATGTGT
1 GATGCCAAACCATCTTAGATCTTGCTTCAATATAAACATCTGAAGGCCAGATCTACTATGTGT
68378521 GTGCCTTCCG
Statistics
Matches: 327, Mismatches: 28, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
294 17 0.05
295 308 0.94
296 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (295 bp):
GATGCCAAACCATCTTAGATCTTGCTTCAATATAAACATCTGAAGGCCAGATCTACTATGTGTTC
GATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACATCTG
AAAGACAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCAATTTGTTCT
CTGACAATACAGAGATGCAAAATCATCTTAGACTTGCTTAAACGTAAACACGTGAAAGCCAAATC
AGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAG
Found at i:68378396 original size:207 final size:206
Alignment explanation
Indices: 68378163--68378724 Score: 858
Period size: 207 Copynumber: 2.7 Consensus size: 206
68378153 TAAGTACAAG
* * * * *
68378163 GATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACATC-TGAAGGCCAGATCTA-CTATGTGT
1 GATGCCAAATCATCTTAGA-CTTGCTTCA-TGTAAACA-CGTGAAAGCCAAATC-AGCTATGTCT
* *
68378226 TCGATTTGTTTCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATC
62 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAATATAAACATC
* ** *
68378291 TGAAAGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGTTAAACTTTAATTTTTT
127 TGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTTAATTTGTT
68378356 CTCTGACAATACAGA
192 CTCTGACAATACAGA
* *
68378371 GATGCCAAATTATCTTAGACTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCG
1 GATGCCAAATCATCTTAGACTTGCTTC-ATGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCG
* *
68378436 ATTTGTTCCTTGTAAGCACACGGATGCCAAACCATCTTGGATCTTACTTCAATATAAACATCTGA
65 ATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAATATAAACATCTGA
* * *
68378501 AGGCCAGATCTGCTATGTGTGTGCCTTCCGTCGAATATGGAGACGCCAAACTTTGATTTGTTCTC
130 AGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTTAATTTGTTCTC
68378566 TGACAATACAGA
195 TGACAATACAGA
* * *
68378578 GATGTCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCG
1 GATGCCAAATCATCTTAGACTTGCTTCAT-GTAAACACGTGAAAGCCAAATCAGCTATGTCTTCG
*
68378643 ATTTGTTCCTTGTAAGCACAATGATGCCAAACCATCTTGGATCTTGCTTCAATATAAACATCTGA
65 ATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAATATAAACATCTGA
68378708 AGGCCAGATCTGCTATG
130 AGGCCAGATCTGCTATG
68378725 CTATAACCTG
Statistics
Matches: 324, Mismatches: 26, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
206 3 0.01
207 303 0.94
208 18 0.06
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
GATGCCAAATCATCTTAGACTTGCTTCATGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGA
TTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTGCTTCAATATAAACATCTGAA
GGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTTAATTTGTTCTCT
GACAATACAGA
Found at i:68378416 original size:502 final size:502
Alignment explanation
Indices: 68377635--68378724 Score: 1688
Period size: 502 Copynumber: 2.2 Consensus size: 502
68377625 AGACGCCAAA
* * * * **
68377635 CTTCGATTTGTT-CTCTG-ACAATACAAAGATTCCAAATCATCTTAGA-CTTGCTTAAACGTAAA
1 CTTCGATTTGTTCCT-TGTA-AGTACAAAGATGCCAAACCATCTTAGATCTTGCTTCAATATAAA
* * *
68377697 CA-CGTGAAAGCCAAATC-AGCTATGTGTTTGATTTGTTCCTTGTAAGCACAAGGATACCAAACC
64 CATC-TGAAGGCCAGATCTA-CTATGTGTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACC
* *
68377760 ATCTTGGATCTGGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTACCTTCCGTCG
127 ATCTTGGATCTGGCTTCAGTATAAACATCTGAAAGCCAGATCTGCTATGTGTCTACCCTCCGTCG
* * *
68377825 AATCTGGAGACGCCAAACTTCAATTTGTTCTCTGACATTACAGAGATGCTAAATCATCTTAGACT
192 AATATGGAGACGCCAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACT
68377890 TGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAA
257 TGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAA
* * *
68377955 GGATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACATCTGAAGGATAGATCTACTATGTGTC
322 GGATGCCAAACCATCTTAGATCTTACTTCAATATAAACATCTGAAGGACAGATCTACTATGTGTC
68378020 TGCCCTCCGTCGAATATGGAGACGCCAAACTTCAATTTGTTCTCTGACAATACAGAGATG-CAAA
387 TGCCCTCCGTCGAATATGGAGACGCCAAACTTCAATTTGTTCTCTGACAATACAGAGATGTC-AA
68378084 ATCATCTTAGACTTGCTTAAACGTAAACACGTGAAAGCCAAATCAGCTATGT
451 ATCATCTTAGACTTGCTTAAACGTAAACACGTGAAAGCCAAATCAGCTATGT
* * *
68378136 GTTCGATTTGTTCCTTGTAAGTACAAGGATGCCAAACCATCTTAGATCTTGCTTCAGTATAAACA
1 CTTCGATTTGTTCCTTGTAAGTACAAAGATGCCAAACCATCTTAGATCTTGCTTCAATATAAACA
* *
68378201 TCTGAAGGCCAGATCTACTATGTGTTCGATTTGTTTCTTGTAAGCACAAGGATGCCAAACCATCT
66 TCTGAAGGCCAGATCTACTATGTGTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCT
* *
68378266 TGGATCTTGCTTCAGTATAAACATCTGAAAGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATA
131 TGGATCTGGCTTCAGTATAAACATCTGAAAGCCAGATCTGCTATGTGTCTACCCTCCGTCGAATA
** * * *
68378331 TGGAGACGTTAAACTTTAATTTTTTCTCTGACAATACAGAGATGCCAAATTATCTTAGACTTGCT
196 TGGAGACGCCAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCT
*
68378396 TCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACACGGAT
261 TCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGAT
* * * *
68378461 GCCAAACCATCTTGGATCTTACTTCAATATAAACATCTGAAGGCCAGATCTGCTATGTGTGTGCC
326 GCCAAACCATCTTAGATCTTACTTCAATATAAACATCTGAAGGACAGATCTACTATGTGTCTGCC
* **
68378526 TTCCGTCGAATATGGAGACGCCAAACTTTGATTTGTTCTCTGACAATACAGAGATGTCAAATCAT
391 CTCCGTCGAATATGGAGACGCCAAACTTCAATTTGTTCTCTGACAATACAGAGATGTCAAATCAT
* * * *
68378591 CTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGCTATGT
456 CTTAGACTTGCTTAAACGTAAACACGTGAAAGCCAAATCAGCTATGT
* * *
68378638 CTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAACCATCTTGGATCTTGCTTCAATATAAACA
1 CTTCGATTTGTTCCTTGTAAGTACAAAGATGCCAAACCATCTTAGATCTTGCTTCAATATAAACA
*
68378703 TCTGAAGGCCAGATCTGCTATG
66 TCTGAAGGCCAGATCTACTATG
68378725 CTATAACCTG
Statistics
Matches: 536, Mismatches: 47, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
501 36 0.07
502 497 0.93
503 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (502 bp):
CTTCGATTTGTTCCTTGTAAGTACAAAGATGCCAAACCATCTTAGATCTTGCTTCAATATAAACA
TCTGAAGGCCAGATCTACTATGTGTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCT
TGGATCTGGCTTCAGTATAAACATCTGAAAGCCAGATCTGCTATGTGTCTACCCTCCGTCGAATA
TGGAGACGCCAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCT
TCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGAT
GCCAAACCATCTTAGATCTTACTTCAATATAAACATCTGAAGGACAGATCTACTATGTGTCTGCC
CTCCGTCGAATATGGAGACGCCAAACTTCAATTTGTTCTCTGACAATACAGAGATGTCAAATCAT
CTTAGACTTGCTTAAACGTAAACACGTGAAAGCCAAATCAGCTATGT
Found at i:68378870 original size:82 final size:81
Alignment explanation
Indices: 68378729--68378928 Score: 253
Period size: 79 Copynumber: 2.4 Consensus size: 81
68378719 GCTATGCTAT
* * * *
68378729 AACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCATCATTGATCTGCTCCGCTACTACTTA
1 AACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCAT-ATCGATCTGCTCCACTACTACTTA
68378794 GGGAGATAAGATCTGCG
65 GGGAGATAAGATCTGCG
*
68378811 AACCTGTTACCTTACTGCTTAAGGGATTAAGGCGAGTC-T-TCGATCTGCTCCACTACTACTTAG
1 AACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCATATCGATCTGCTCCACTACTACTTAG
*
68378874 GGAGATAAGATCTGCAAATTT
66 GGAGATAAGATCTGC-----G
*
68378895 AACCTGTTACCCTACAGCTT-AGAGGATTAAGGCG
1 AACCTGTTACCCTACTGCTTAAG-GGATTAAGGCG
68378929 CTGAATTTTG
Statistics
Matches: 104, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
79 37 0.36
81 1 0.01
82 35 0.34
83 2 0.02
84 29 0.28
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (81 bp):
AACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCATATCGATCTGCTCCACTACTACTTAG
GGAGATAAGATCTGCG
Found at i:68379867 original size:1 final size:1
Alignment explanation
Indices: 68379857--68379929 Score: 65
Period size: 1 Copynumber: 73.0 Consensus size: 1
68379847 GGCCTCTCCA
* * * * * * * *
68379857 TTTTTCTTTTTTCTTTTTCTTATTTTTCTTTTTTCTTTTTTTTTTTTTCTTTTTTTCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
68379922 TCTTTTTT
1 TTTTTTTT
68379930 GAAATAGAAG
Statistics
Matches: 54, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.01, C:0.11, G:0.00, T:0.88
Consensus pattern (1 bp):
T
Found at i:68379902 original size:29 final size:28
Alignment explanation
Indices: 68379857--68379929 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 28
68379847 GGCCTCTCCA
*
68379857 TTTTTCTTTTTTCTTTTTCTTATTTTTCT
1 TTTTTCTTTTTTTTTTTTCTT-TTTTTCT
68379886 TTTTTCTTTTTTTTTTTTTCTTTTTTTCT
1 TTTTTC-TTTTTTTTTTTTCTTTTTTTCT
*
68379915 TTTTT-TTTCTTTTTT
1 TTTTTCTTTTTTTTTT
68379930 GAAATAGAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
27 9 0.22
29 18 0.44
30 14 0.34
ACGTcount: A:0.01, C:0.11, G:0.00, T:0.88
Consensus pattern (28 bp):
TTTTTCTTTTTTTTTTTTCTTTTTTTCT
Found at i:68379921 original size:22 final size:21
Alignment explanation
Indices: 68379857--68379927 Score: 106
Period size: 22 Copynumber: 3.2 Consensus size: 21
68379847 GGCCTCTCCA
*
68379857 TTTTTCTTTTTTCTTTTTCTTA
1 TTTTTCTTTTTTCTTTTT-TTT
68379879 TTTTTCTTTTTTCTTTTTTTT
1 TTTTTCTTTTTTCTTTTTTTT
68379900 TTTTTCTTTTTTTCTTTTTTTT
1 TTTTTC-TTTTTTCTTTTTTTT
68379922 TCTTTT
1 T-TTTT
68379928 TTGAAATAGA
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
21 8 0.17
22 34 0.74
23 4 0.09
ACGTcount: A:0.01, C:0.11, G:0.00, T:0.87
Consensus pattern (21 bp):
TTTTTCTTTTTTCTTTTTTTT
Found at i:68379929 original size:7 final size:7
Alignment explanation
Indices: 68379857--68379919 Score: 83
Period size: 7 Copynumber: 8.7 Consensus size: 7
68379847 GGCCTCTCCA
68379857 TTTTTCT
1 TTTTTCT
68379864 TTTTTC-
1 TTTTTCT
68379870 TTTTTCTT
1 TTTTTC-T
68379878 ATTTTTCT
1 -TTTTTCT
68379886 TTTTTCT
1 TTTTTCT
*
68379893 TTTTTTT
1 TTTTTCT
68379900 TTTTTCTT
1 TTTTTC-T
68379908 TTTTTCT
1 TTTTTCT
68379915 TTTTT
1 TTTTT
68379920 TTTCTTTTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
6 6 0.12
7 30 0.60
8 8 0.16
9 6 0.12
ACGTcount: A:0.02, C:0.11, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTCT
Found at i:68385711 original size:18 final size:18
Alignment explanation
Indices: 68385671--68385721 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
68385661 AATCATATCT
* *
68385671 TCTAAGATTGTATATCGTA
1 TCTAAGATTGCA-ATCATA
68385690 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
68385708 TCTAAGATTGCAAT
1 TCTAAGATTGCAAT
68385722 TGTAACACCC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
18 19 0.63
19 11 0.37
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:68389261 original size:49 final size:49
Alignment explanation
Indices: 68389196--68389294 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 49
68389186 ATTTTTATCT
* * *
68389196 CAGATTTTGTGATCCCGAAACCTCTGTTGCAACTAGACCCAATTTTGGG
1 CAGATTTTGTGATCCCGAAACCTCTATTCCAACTAGACCCAATTTGGGG
* *
68389245 CAGATTTTGTGGTCCCGAAACCTCTATTCCAACTAGACCTAATTTGGGG
1 CAGATTTTGTGATCCCGAAACCTCTATTCCAACTAGACCCAATTTGGGG
68389294 C
1 C
68389295 TATTACATCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (49 bp):
CAGATTTTGTGATCCCGAAACCTCTATTCCAACTAGACCCAATTTGGGG
Found at i:68389349 original size:35 final size:35
Alignment explanation
Indices: 68389303--68389391 Score: 160
Period size: 35 Copynumber: 2.5 Consensus size: 35
68389293 GCTATTACAT
68389303 CAATCATATCTAAGATTGTATCATATCTAAGATTG
1 CAATCATATCTAAGATTGTATCATATCTAAGATTG
68389338 CAATCATATCTAAGATTGTATCATATCTAAGATTG
1 CAATCATATCTAAGATTGTATCATATCTAAGATTG
*
68389373 CATATCACATCTAAGATTG
1 CA-ATCATATCTAAGATTG
68389392 CATATCATTG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
35 37 0.71
36 15 0.29
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (35 bp):
CAATCATATCTAAGATTGTATCATATCTAAGATTG
Found at i:68389384 original size:19 final size:19
Alignment explanation
Indices: 68389305--68389399 Score: 146
Period size: 17 Copynumber: 5.3 Consensus size: 19
68389295 TATTACATCA
68389305 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
68389322 ATCATATCTAAGATTGCA-
1 ATCATATCTAAGATTGCAT
68389340 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
68389357 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
68389376 ATCACATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
68389395 ATCAT
1 ATCAT
68389400 TGAAGATTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
17 32 0.45
18 16 0.23
19 23 0.32
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:68393396 original size:43 final size:43
Alignment explanation
Indices: 68393246--68393385 Score: 192
Period size: 43 Copynumber: 3.2 Consensus size: 43
68393236 TATCGAAATG
* *
68393246 TGATATACAGGCTTCGGGCCTAGCAGGCTATAATA-CCGATGAAA
1 TGATAT-CGGGCTTCGGGCCTAGCAGGCTATAA-AGCCGGTGAAA
* * *
68393290 TGATATCGGGCTTCGGGCCTAGCAAGCTATAATGCCGGTGAGA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAAAGCCGGTGAAA
* *
68393333 TAATATCGGGCCTCGGGCCTAGCAGGCTATAAAGCCGGTGAAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAAAGCCGGTGAAA
68393376 TGATATCGGG
1 TGATATCGGG
68393386 TTTCAAGCCT
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
43 78 0.93
44 6 0.07
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (43 bp):
TGATATCGGGCTTCGGGCCTAGCAGGCTATAAAGCCGGTGAAA
Found at i:68396599 original size:39 final size:39
Alignment explanation
Indices: 68396556--68396669 Score: 165
Period size: 39 Copynumber: 2.9 Consensus size: 39
68396546 CCGGACATAT
* * *
68396556 TTCCAGCACGTAACCTGCGGACCTTAAGTCCAGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
* *
68396595 TTCCAGCACATAGCTTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
* *
68396634 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATA
68396670 AACATCACTG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
Found at i:68404007 original size:43 final size:43
Alignment explanation
Indices: 68403949--68404105 Score: 199
Period size: 43 Copynumber: 3.6 Consensus size: 43
68403939 TATCGAAATG
* *
68403949 TGATATACAGGCTTCGGGCCTAGCAGGCTATAATACCGATGAAA
1 TGATAT-CGGGCTTCGGGCCTAGCAGGCTATAATACCGGTGAAA
* * * *
68403993 TGATATCGGGCTTCGGGCCTAGCAAGCAATAATGCCGGTGAGA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATACCGGTGAAA
* *
68404036 TAATATCGGGCCTCGGGCCTAGCAGGCTATAA-AGCCGGTGAAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATA-CCGGTGAAA
**
68404079 TGATATCGGGCTTCAAGCCTAGCAGGC
1 TGATATCGGGCTTCGGGCCTAGCAGGC
68404106 GAAATGCTGG
Statistics
Matches: 96, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
43 90 0.94
44 6 0.06
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.21
Consensus pattern (43 bp):
TGATATCGGGCTTCGGGCCTAGCAGGCTATAATACCGGTGAAA
Found at i:68406318 original size:44 final size:44
Alignment explanation
Indices: 68406260--68406592 Score: 188
Period size: 44 Copynumber: 7.6 Consensus size: 44
68406250 AATTTACAGA
68406260 TCTT-AACCCTCTAAGCAGTAGGGAAACAGATCGAAAACGATGAG
1 TCTTAAACCC-CTAAGCAGTAGGGAAACAGATCGAAAACGATGAG
* * ***
68406304 TCTTAAACCCCTAAGCAATAGGGTAACAAGAT-G-AATTTAT-AG
1 TCTTAAACCCCTAAGCAGTAGGGAAAC-AGATCGAAAACGATGAG
* ** *
68406346 ATCTTAACCCCCTAAGTGGTAGGGAAACAGATC-AAAGACGATGGG
1 -TCTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAA-ACGATGAG
* * * * * *
68406391 CCTTAAACCCCTAAGTAGTAGGGTAACAGGTTGAATTTAC-A-GA-
1 TCTTAAACCCCTAAGCAGTAGGGAAACAGATCGAA--AACGATGAG
* * * *
68406434 TCTT-AACCCTCTAAGTAGTAGGGAAATAGATCGAAGACGATGGG
1 TCTTAAACCC-CTAAGCAGTAGGGAAACAGATCGAAAACGATGAG
* * * * * *
68406478 CCTTGAACCCCTAAACAGTAGGGTAACA-AGTTGAATTTAC-A-GA-
1 TCTTAAACCCCTAAGCAGTAGGGAAACAGA-TCGAA--AACGATGAG
* *** *
68406521 TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGG
1 TCTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAAACGATGAG
* * *
68406565 CCTTAAACCCCTATGCAGTAGGGTAACA
1 TCTTAAACCCCTAAGCAGTAGGGAAACA
68406593 AGCTGGAAAT
Statistics
Matches: 216, Mismatches: 51, Indels: 44
0.69 0.16 0.14
Matches are distributed among these distances:
41 2 0.01
42 13 0.06
43 82 0.38
44 96 0.44
45 19 0.09
46 4 0.02
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.22
Consensus pattern (44 bp):
TCTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAAACGATGAG
Found at i:68406387 original size:87 final size:87
Alignment explanation
Indices: 68406250--68406594 Score: 494
Period size: 87 Copynumber: 4.0 Consensus size: 87
68406240 TAACAGGCTT
* * *
68406250 AATTTACAGATCTTAACCCTCTAAGCAGTAGGGAAACAGATCGAAA-ACGATGAGTCTTAAACCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATC-AAAGACGATGGGCCTTAAACCC
* *
68406314 CTAAGCAATAGGGTAACAAGATG
65 CTAAGCAGTAGGGTAACAAGTTG
* **
68406337 AATTTATAGATCTTAACCCCCTAAGTGGTAGGGAAACAGATCAAAGACGATGGGCCTTAAACCCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGATGGGCCTTAAACCCC
* *
68406402 TAAGTAGTAGGGTAACAGGTTG
66 TAAGCAGTAGGGTAACAAGTTG
* * * * *
68406424 AATTTACAGATCTTAACCCTCTAAGTAGTAGGGAAATAGATCGAAGACGATGGGCCTTGAACCCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGATGGGCCTTAAACCCC
*
68406489 TAAACAGTAGGGTAACAAGTTG
66 TAAGCAGTAGGGTAACAAGTTG
* **
68406511 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGGCCTTAAACCCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGATGGGCCTTAAACCCC
*
68406576 TATGCAGTAGGGTAACAAG
66 TAAGCAGTAGGGTAACAAG
68406595 CTGGAAATTA
Statistics
Matches: 230, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
86 3 0.01
87 227 0.99
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (87 bp):
AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGATGGGCCTTAAACCCC
TAAGCAGTAGGGTAACAAGTTG
Found at i:68408167 original size:25 final size:25
Alignment explanation
Indices: 68408138--68408187 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
68408128 ATTTTATTTT
68408138 AATTTCAATATTATATATACTATTA
1 AATTTCAATATTATATATACTATTA
* * *
68408163 AATTTTATTATTATATTTACTATTA
1 AATTTCAATATTATATATACTATTA
68408188 GCCTTAGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (25 bp):
AATTTCAATATTATATATACTATTA
Found at i:68408445 original size:35 final size:36
Alignment explanation
Indices: 68408363--68408445 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 36
68408353 TTATGCATAA
* * **
68408363 ATTTTTTTACTACGCATATATATCTTTTAATATTGT
1 ATTTTTTTATTACGCATATATATCTTTTAATACTAC
* * *
68408399 ATTTTCATTATTATGTATATATAT-TTTTAATACTAC
1 ATTTT-TTTATTACGCATATATATCTTTTAATACTAC
68408435 ATTTTTTTATT
1 ATTTTTTTATT
68408446 TTCTATTATT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
35 5 0.13
36 19 0.50
37 14 0.37
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.59
Consensus pattern (36 bp):
ATTTTTTTATTACGCATATATATCTTTTAATACTAC
Found at i:68408722 original size:14 final size:15
Alignment explanation
Indices: 68408703--68408732 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
68408693 TTCATTGTCA
68408703 TTGTCAT-TTTTATT
1 TTGTCATGTTTTATT
68408717 TTGTCATGTTTTATT
1 TTGTCATGTTTTATT
68408732 T
1 T
68408733 ATTTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.13, C:0.07, G:0.10, T:0.70
Consensus pattern (15 bp):
TTGTCATGTTTTATT
Found at i:68410342 original size:4 final size:4
Alignment explanation
Indices: 68410328--68410357 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
68410318 CTCCAAAACA
68410328 TATT TATTT TATT TATT TATT TATT TATT T
1 TATT TA-TT TATT TATT TATT TATT TATT T
68410358 TTCCTTTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TATT
Found at i:68420160 original size:34 final size:34
Alignment explanation
Indices: 68420112--68420190 Score: 149
Period size: 34 Copynumber: 2.3 Consensus size: 34
68420102 CCCTTGAATC
*
68420112 ATGCACTCATCGAAAGCAGCTCTTACCCACAATA
1 ATGCCCTCATCGAAAGCAGCTCTTACCCACAATA
68420146 ATGCCCTCATCGAAAGCAGCTCTTACCCACAATA
1 ATGCCCTCATCGAAAGCAGCTCTTACCCACAATA
68420180 ATGCCCTCATC
1 ATGCCCTCATC
68420191 TTGGAATGAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.32, C:0.35, G:0.11, T:0.22
Consensus pattern (34 bp):
ATGCCCTCATCGAAAGCAGCTCTTACCCACAATA
Found at i:68426226 original size:34 final size:34
Alignment explanation
Indices: 68426155--68426226 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 34
68426145 TATATTAAAT
* * * * * *
68426155 TATATTTATTGATCATATAATTGTGTTGTAAAGA
1 TATATTTATTGAACATAAAATTATCTTATAAAAA
*
68426189 TATATTTTTTGAACATAAAATTATCTTATAAAAA
1 TATATTTATTGAACATAAAATTATCTTATAAAAA
68426223 TATA
1 TATA
68426227 ACTTTACATA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.46
Consensus pattern (34 bp):
TATATTTATTGAACATAAAATTATCTTATAAAAA
Found at i:68426699 original size:20 final size:20
Alignment explanation
Indices: 68426674--68426714 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
68426664 ATCAAGAAAG
68426674 TAAGATAAGATTTTTTAACT
1 TAAGATAAGATTTTTTAACT
68426694 TAAGATAAGATTTTTTAACT
1 TAAGATAAGATTTTTTAACT
68426714 T
1 T
68426715 CTAATGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (20 bp):
TAAGATAAGATTTTTTAACT
Found at i:68428571 original size:12 final size:12
Alignment explanation
Indices: 68428556--68428590 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
68428546 CTAAAACTGA
*
68428556 ATCTGTTTCTGT
1 ATCTGTATCTGT
68428568 ATCTGTATCTGT
1 ATCTGTATCTGT
68428580 ATCTGTATCTG
1 ATCTGTATCTG
68428591 ATTGTGCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.14, C:0.17, G:0.17, T:0.51
Consensus pattern (12 bp):
ATCTGTATCTGT
Found at i:68428577 original size:18 final size:18
Alignment explanation
Indices: 68428556--68428590 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
68428546 CTAAAACTGA
*
68428556 ATCTGTTTCTGTATCTGT
1 ATCTGTATCTGTATCTGT
68428574 ATCTGTATCTGTATCTG
1 ATCTGTATCTGTATCTG
68428591 ATTGTGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.17, G:0.17, T:0.51
Consensus pattern (18 bp):
ATCTGTATCTGTATCTGT
Found at i:68429611 original size:146 final size:146
Alignment explanation
Indices: 68429420--68429718 Score: 508
Period size: 146 Copynumber: 2.0 Consensus size: 146
68429410 ATTATATTTG
* * * *
68429420 ATATATACTTATTTTTGTGCAGTCTCCTAATGAGTTGTGTCAGTGATATTTTACTAAGGATGGAT
1 ATATATAATTACTTTTGTGCACTCTCATAATGAGTTGTGTCAGTGATATTTTACTAAGGATGGAT
* * *
68429485 AGTTGAAAGTCTCATAGTTATGTGAACAATAATATTTAAGAATTCACTAAATAGTAAAAAGATGG
66 AGTTGAAAGTCTCATAGTTATGTAAACAATAACATTTAAGAATTCACTAAATAGTAAAAAGATGA
68429550 ATGAATGAGCATATTA
131 ATGAATGAGCATATTA
* *
68429566 ATATATAATTACTTTTGTGCACTCTCATATTGAGTTGTGTTAGTGATATTTTACTAAGGATGGAT
1 ATATATAATTACTTTTGTGCACTCTCATAATGAGTTGTGTCAGTGATATTTTACTAAGGATGGAT
*
68429631 AGTTGAAGGTCTCATAGTTATGTAAACAATAACATTTAAGAATTCACTAAATAGTAAAAAGATGA
66 AGTTGAAAGTCTCATAGTTATGTAAACAATAACATTTAAGAATTCACTAAATAGTAAAAAGATGA
68429696 ATGAATGAGCATATTA
131 ATGAATGAGCATATTA
68429712 ATATATA
1 ATATATA
68429719 TTGTATCTTG
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
146 143 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.36
Consensus pattern (146 bp):
ATATATAATTACTTTTGTGCACTCTCATAATGAGTTGTGTCAGTGATATTTTACTAAGGATGGAT
AGTTGAAAGTCTCATAGTTATGTAAACAATAACATTTAAGAATTCACTAAATAGTAAAAAGATGA
ATGAATGAGCATATTA
Found at i:68432882 original size:9 final size:9
Alignment explanation
Indices: 68432865--68432950 Score: 54
Period size: 9 Copynumber: 9.7 Consensus size: 9
68432855 TAAGATTGTA
*
68432865 TTAAGTTTT
1 TTAATTTTT
68432874 TTAATTTTTT
1 TTAA-TTTTT
*
68432884 TTACA-ATTT
1 TTA-ATTTTT
68432893 TTAATATTTT
1 TTAAT-TTTT
68432903 TTAATTTTT
1 TTAATTTTT
*
68432912 ATAA-TTTT
1 TTAATTTTT
*
68432920 AT-ATTTTT
1 TTAATTTTT
*
68432928 TTACTTTTT
1 TTAATTTTT
* *
68432937 ATAA-TATT
1 TTAATTTTT
68432945 TTAATT
1 TTAATT
68432951 AGTTACTGAT
Statistics
Matches: 60, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
7 1 0.02
8 18 0.30
9 25 0.42
10 15 0.25
11 1 0.02
ACGTcount: A:0.28, C:0.02, G:0.01, T:0.69
Consensus pattern (9 bp):
TTAATTTTT
Done.