Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 208 of 343
Found at i:68643931 original size:12 final size:12
Alignment explanation
Indices: 68643914--68643944 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
68643904 AACATTTTGA
68643914 CATTCATGCATT
1 CATTCATGCATT
68643926 CATTCATGCATT
1 CATTCATGCATT
68643938 CATTCAT
1 CATTCAT
68643945 ATATTGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:68652387 original size:71 final size:69
Alignment explanation
Indices: 68652289--68652463 Score: 226
Period size: 71 Copynumber: 2.5 Consensus size: 69
68652279 TTTTCAAGGG
* *
68652289 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
68652353 GTTTT
65 GTTTT
** * *
68652358 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
68652423 TGTTTT
64 TGTTTT
** * *
68652429 AAATTGACTCATATTGCGAGATGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
68652464 TTTAATTTTT
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 31 0.33
71 60 0.65
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:68652790 original size:279 final size:279
Alignment explanation
Indices: 68652435--68653115 Score: 1159
Period size: 279 Copynumber: 2.4 Consensus size: 279
68652425 TTTTAAATTG
* * * ** *
68652435 ACTCATATTGCGAGATGTGAGTT-AAGCCTTTTAATTTTTTTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTACTTTTCAAAATCAGCTCATATTGC
*
68652499 GAGAGGTGAGTTGAGCCTCAGGTCACCCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGT
65 GAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGT
*
68652564 TCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAG
130 TCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAG
* *
68652629 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAA
195 CTCATATTGCGAAAGGTGAATTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAA
68652694 TTTACGTTGTTCAAGAATCA
260 TTTACGTTGTTCAAGAATCA
68652714 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTCAAAATCAGCTCATATTGCG
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTCAAAATCAGCTCATATTGCG
*
68652779 AGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTT
66 AGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTT
68652844 CAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGC
131 CAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGC
*
68652909 TCATATTGCGAAAGGTGAATTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
196 TCATATTGCGAAAGGTGAATTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAAT
* *
68652974 TTATGTTTTTCAAGAATCA
261 TTACGTTGTTCAAGAATCA
*
68652993 ACTCATATTGCGAGAGGTGGGTTGAACCGTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTAC-TTTTCAAAATCAGCTCATATTGC
68653058 GAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAA
65 GAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TTTCAA
68653116 AAAAAAATTC
Statistics
Matches: 380, Mismatches: 16, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
279 304 0.80
280 48 0.13
282 22 0.06
283 6 0.02
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (279 bp):
ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTCAAAATCAGCTCATATTGCG
AGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTT
CAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGC
TCATATTGCGAAAGGTGAATTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAAT
TTACGTTGTTCAAGAATCA
Found at i:68652851 original size:139 final size:140
Alignment explanation
Indices: 68652435--68653115 Score: 1163
Period size: 140 Copynumber: 4.9 Consensus size: 140
68652425 TTTTAAATTG
* * ** *
68652435 ACTCATATTGCGAGATGTGAGTT-AAGCCTTTTAATTT-TTTTTTTTCAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTG
*
68652498 CGAGAGGTGAGTTGAGCCTCAGGTCACCCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTG
65 CGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTG
68652563 TTCAAGAATCA
130 TTCAAGAATCA
68652574 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
*
68652639 GAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGT
66 GAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGT
68652704 TCAAGAATCA
131 TCAAGAATCA
68652714 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTAC-TTTTCAAAATCAGCTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
*
68652778 GAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGT
66 GAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGT
68652843 TCAAGAATCA
131 TCAAGAATCA
*
68652853 ACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
* * * *
68652918 GAAAGGTGAATTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTATGTTTT
66 GAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGT
68652983 TCAAGAATCA
131 TCAAGAATCA
*
68652993 ACTCATATTGCGAGAGGTGGGTTGAACCGTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
68653058 GAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAA
66 GAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TTTCAA
68653116 AAAAAAATTC
Statistics
Matches: 517, Mismatches: 18, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
139 170 0.33
140 318 0.62
142 23 0.04
143 6 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
GAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGT
TCAAGAATCA
Found at i:68652986 original size:14 final size:13
Alignment explanation
Indices: 68652953--68652982 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
68652943 CGCTGAGGTA
*
68652953 TTTTCAATTTCTG
1 TTTTCAATTTATG
68652966 TTTTCAATTTATG
1 TTTTCAATTTATG
68652979 TTTT
1 TTTT
68652983 TCAAGAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.10, G:0.07, T:0.67
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:68653444 original size:75 final size:75
Alignment explanation
Indices: 68653193--68653616 Score: 536
Period size: 75 Copynumber: 5.7 Consensus size: 75
68653183 CTGTTCAAAA
* * *
68653193 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT-ATTTTC--AAAATTTAACTCATA
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
**
68653255 TTGCGAGAAA
66 TTGCGAGAGG
* * * *
68653265 TTAGTTGAGCCTCAAAACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCA
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTTC--AAAAAAATCAACTCA
* **
68653330 TATTGTGAGAAA
64 TATTGCGAGAGG
* *
68653342 TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
68653407 TTGCGAGAGG
66 TTGCGAGAGG
* *
68653417 TGAGTTGAGCCTCAGGACACGCAGAGGTAATTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
68653482 TTGCGAGAGG
66 TTGCGAGAGG
* * * *
68653492 TGAGTTGAGCCTCAGGACACGCAGAGGTAATTTCAATTTCTG-TTGT-AAAAAAATCAACTCGTA
1 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
*
68653555 TTGTGAGAGG
66 TTGCGAGAGG
* * * *
68653565 CGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT-TCGTTTTTCAA
1 TGAGTTGAGCCTCAAG--ACACGCTGAGGTAATTTCAATTTCT-GTTTTTCAA
68653617 TTTCTGCCTT
Statistics
Matches: 318, Mismatches: 24, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
72 37 0.12
73 45 0.14
74 4 0.01
75 159 0.50
76 3 0.01
77 70 0.22
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (75 bp):
TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
TTGCGAGAGG
Found at i:68653707 original size:92 final size:92
Alignment explanation
Indices: 68653538--68653708 Score: 222
Period size: 92 Copynumber: 1.9 Consensus size: 92
68653528 TTTCTGTTGT
* * * *
68653538 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCAAGCTATTTTCAA
*
68653603 TTTTCGTTTTTCAATTTCTGCCTTTCA
66 TTTTCGTCTTTCAATTTCTGCCTTTCA
* * *
68653630 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG-CTCACGCACTAAGCTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC-C-AAGCTATTTTC
68653693 AA-TTTCTGTCTTTCAA
64 AATTTTC-GTCTTTCAA
68653709 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
90 6 0.09
91 7 0.10
92 55 0.81
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (92 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCAAGCTATTTTCAA
TTTTCGTCTTTCAATTTCTGCCTTTCA
Found at i:68653738 original size:77 final size:77
Alignment explanation
Indices: 68653610--68653989 Score: 320
Period size: 78 Copynumber: 4.7 Consensus size: 77
68653600 CAATTTTCGT
*
68653610 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
*
68653675 ACGCACTAAGCTA
65 ACGCACTGAGCTA
* *
68653688 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
* *
68653752 ACACACTGAGGTA
65 ACGCACTGAGCTA
* * * * * * *
68653765 TTTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
* *
68653829 CA--CATGTCGAGGTA
64 CACGCA-CT-GAGCTA
* *** *
68653843 -TTTCAAAATCTTTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTC--AA------TTTCTG--TCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
**
68653907 GCCTTGGCTCACGTGCTGAGCTA
55 GCCTTGGCTCACGCACTGAGCTA
* *
68653930 TTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCTAGAGGTGAGTTGAGC
1 TTTTCAATTTCTG---TCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
68653990 TTTTTAATTT
Statistics
Matches: 242, Mismatches: 37, Indels: 43
0.75 0.11 0.13
Matches are distributed among these distances:
75 4 0.02
76 5 0.02
77 52 0.21
78 61 0.25
79 18 0.07
80 12 0.05
81 31 0.13
83 3 0.01
85 2 0.01
86 4 0.02
87 45 0.19
88 5 0.02
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CGCACTGAGCTA
Found at i:68653880 original size:242 final size:238
Alignment explanation
Indices: 68653371--68654200 Score: 858
Period size: 242 Copynumber: 3.4 Consensus size: 238
68653361 TGCTGAGGTA
* * *
68653371 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
1 TTTTCAAGTTCTG--TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTC
* *
68653435 ACGCA--GAGGTAATTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
62 ACGCACTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * * * * * *
68653498 GAGCCTCAGGA-CACGCA-GAGGTA-ATTTCAATTTCTGTTGTAAAAAAATCAACTCGTATTGTG
127 GAGCTTCA-GATCACACATGAGGTATTTTTCAATTTCTTTTTTCAAAAAATCAACTCATATTGCG
* * * *
68653560 AGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC-AATTTTCGT
191 AGAGGTGAGTTGAGCCTC-GGTCACATGTCGAGGTATTTTCAAATCTT--T
*
68653610 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTCAAGTTCTG--TTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
* *
68653675 ACGCACTAAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
62 ACGCACTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
68653740 GAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTG
127 GAGCTTCAGATCACACA-TGAGGTA-TTTTTCAATTTCT-TTTTTCAAAAAATCAACTCATATTG
*
68653805 CGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTA-TTTCAAAATCTTT
189 CGAGAGGTGAGTTGAGCCTC-GGTCACATGTCGAGGTATTTTC-AAATCTTT
*
68653856 TTTTC-AGATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCAC
1 TTTTCAAG-TTCTG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
** *
68653919 GTGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCTAGAGGTGAG
64 GCACTGAGCTATTTTCAATTTCTG---TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAG
* * * *
68653984 TTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATC
125 TTGAGC--TTCAGA--TC-AC-ACA--TGAGGT-A-T-TTTTCAATTTCT-TTTTTCAAAAAATC
* * * * **
68654046 AACTCATATTGCAAGAGGTGAGTTGAACCTTCAGTCACATATCGAGGTATTTTCCAAATCTGC
178 AACTCATATTGCGAGAGGTGAGTTGAGCC-TCGGTCACATGTCGAGGTATTTT-CAAATCTTT
** * *
68654109 TTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTTGGCTCACGT
1 TTTTCAAGTTCTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
*
68654174 GCTGAGCTATTTTCAATTTCTGTTTTT
66 ACTGAGCTATTTTCAATTTCTGTTTTT
68654201 AATGTCTGTT
Statistics
Matches: 508, Mismatches: 52, Indels: 51
0.83 0.09 0.08
Matches are distributed among these distances:
239 19 0.04
240 45 0.09
241 2 0.00
242 131 0.26
244 6 0.01
245 17 0.03
246 54 0.11
247 53 0.10
248 8 0.02
249 2 0.00
250 6 0.01
251 2 0.00
252 56 0.11
253 100 0.20
254 7 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (238 bp):
TTTTCAAGTTCTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
ACTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
TTCAGATCACACATGAGGTATTTTTCAATTTCTTTTTTCAAAAAATCAACTCATATTGCGAGAGG
TGAGTTGAGCCTCGGTCACATGTCGAGGTATTTTCAAATCTTT
Found at i:68654016 original size:30 final size:30
Alignment explanation
Indices: 68653975--68654032 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
68653965 TCATATTGCT
68653975 AGAGGTGAGTTGAG-CTTTTTAATTTCTGCG
1 AGAGGTGAGTTGAGTC-TTTTAATTTCTGCG
*
68654005 AGAGTTGAGTTGAGTCTTTTAATTTCTG
1 AGAGGTGAGTTGAGTCTTTTAATTTCTG
68654033 TTTTTCAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.21, C:0.09, G:0.28, T:0.43
Consensus pattern (30 bp):
AGAGGTGAGTTGAGTCTTTTAATTTCTGCG
Found at i:68654918 original size:26 final size:26
Alignment explanation
Indices: 68654857--68654918 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
68654847 AAGCCCTCCC
68654857 AAAAAAAAAACCTAACCAAAAATAAA
1 AAAAAAAAAACCTAACCAAAAATAAA
*
68654883 AAATAAAAAACCTAACCAAAAA-AAA
1 AAAAAAAAAACCTAACCAAAAATAAA
68654908 TAAAAAAAAAA
1 -AAAAAAAAAA
68654919 GAAAAACCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 3 0.09
26 30 0.91
ACGTcount: A:0.79, C:0.13, G:0.00, T:0.08
Consensus pattern (26 bp):
AAAAAAAAAACCTAACCAAAAATAAA
Found at i:68654974 original size:29 final size:29
Alignment explanation
Indices: 68654909--68654986 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
68654899 CAAAAAAAAT
*
68654909 AAAAAAAA--AAGAAAAACCTAACCCCCCC
1 AAAAAAAACCAAG-AAAACCTAACCCCCCA
*
68654937 GAAAAAAACCAAGAAAACCTAACCCCCCA
1 AAAAAAAACCAAGAAAACCTAACCCCCCA
*
68654966 AAAAAAAACCAAGAAACCCTA
1 AAAAAAAACCAAGAAAACCTA
68654987 GCCACCTAGC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 7 0.16
29 34 0.77
30 3 0.07
ACGTcount: A:0.60, C:0.31, G:0.05, T:0.04
Consensus pattern (29 bp):
AAAAAAAACCAAGAAAACCTAACCCCCCA
Found at i:68657068 original size:19 final size:20
Alignment explanation
Indices: 68657030--68657068 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
68657020 ACTCCCTCAA
*
68657030 CCCCTAAACTTTTTATTTCT
1 CCCCTAAACTTTTTACTTCT
68657050 CCCCTAAAC-TTTTACTTCT
1 CCCCTAAACTTTTTACTTCT
68657069 TACTTTTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.21, C:0.33, G:0.00, T:0.46
Consensus pattern (20 bp):
CCCCTAAACTTTTTACTTCT
Found at i:68662269 original size:16 final size:16
Alignment explanation
Indices: 68662248--68662279 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
68662238 AATTGGGTTG
*
68662248 AGAAAATTATTTAATT
1 AGAAAATTAATTAATT
68662264 AGAAAATTAATTAATT
1 AGAAAATTAATTAATT
68662280 TAATAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (16 bp):
AGAAAATTAATTAATT
Found at i:68664495 original size:15 final size:15
Alignment explanation
Indices: 68664477--68664578 Score: 51
Period size: 15 Copynumber: 7.1 Consensus size: 15
68664467 ATTATTATTA
68664477 TTATTATATTTCTAT
1 TTATTATATTTCTAT
* *
68664492 TTATATTTATTT-T-C
1 TTAT-TATATTTCTAT
* * *
68664506 TTATTCTAATGCTA-
1 TTATTATATTTCTAT
68664520 TTATTAT-TTATCTAAT
1 TTATTATATT-TCT-AT
*
68664536 TT-TGAT-TTATCTAT
1 TTATTATATT-TCTAT
68664550 TTA-T--ATTTCTAT
1 TTATTATATTTCTAT
68664562 TTATTATATTTCTAT
1 TTATTATATTTCTAT
68664577 TT
1 TT
68664579 CTATTTATAT
Statistics
Matches: 66, Mismatches: 10, Indels: 22
0.67 0.10 0.22
Matches are distributed among these distances:
12 8 0.12
13 8 0.12
14 17 0.26
15 25 0.38
16 8 0.12
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (15 bp):
TTATTATATTTCTAT
Found at i:68664728 original size:3 final size:3
Alignment explanation
Indices: 68664720--68664765 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
68664710 TTTTTTACTA
* * * *
68664720 TAT TAT TAT TAA TAT TAT GAT CAT TAT TAT TAT TAC TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
68664766 CAATTAAGTA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:68676017 original size:44 final size:44
Alignment explanation
Indices: 68675848--68676831 Score: 452
Period size: 44 Copynumber: 21.8 Consensus size: 44
68675838 TCATTATGGA
* * **
68675848 AAATCTCATCTCCCT-AAGGTCGCA-TGGAGCAGATTGAAGCCAC
1 AAATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTGAAGATAC
* * * * * *
68675891 GAATCTTATCTCGCTGAAGTTGCAGTGGAGTAGA-TCAATCATAGA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-GATA-C
* * * * * *
68675936 AAACCTTATCTCTCT-AAGTCGCAGAGGAGCAGGTTGAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* *
68675979 AAATCTTATCTCCCTGAAGTAGCAGTGGAGCATATTGAAGACAGACTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---GA-AGA-TAC
* * **
68676028 AAATCTCATCTCCCT-AAGGTTGCA-TGGAGCAAATTGAAGCCAC
1 AAATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTGAAGATAC
* * * * * *
68676071 AAATCTTATCTCCCTGAATTTTCAGTTGAGTAGATTGAAGTTAT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * * * * ** *
68676115 AGATCTTATCTCCCTGAAGTTACAATGGAGTAGATCGATCATAGA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * * * * *
68676160 AAACCTTATCTTCCTGAAGTCGCAGTGGAGTAGGTTAAAGATACC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * * *
68676205 AAATCTTATCTCCTTGGAGTTGTAGTGGAGCAGATTGAGGATAGGCTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---GA-A-GATAC
* * **
68676254 AAATCTCATCTCCCTGAGGTTGCA-TGGAGCAGATTGAAGCCAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * * ** *
68676297 AACTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGATCATAGA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * * ** * * *
68676342 AAACCTTATCTCTCTAAAGTCACAGTGGAGCAGGTTGAAGTTAT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * * * * **
68676386 AAGTCTTATCCCCCTCAAGTTGCAATGAAGCAGGCTGAAGATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* ** * *
68676431 AAATCATATCTCTTTGAAGTTGCAGTGGAGTAGATTAAAG-T-C
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * * *
68676473 GTAGATCTTATCTCCCTGAAGTGGCATTGGAGCAGACTGAAGATAGC
1 --AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * * * * *
68676520 GAATCTTATTTCCCTGAAGTTGCAATGGAACATATT-AAAACTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAC
* * * * *
68676564 AAATTACAAATCTAATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTGC
1 AAA-T-C---T-T-ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * ** * * * * *
68676615 AGATGTTATCTCCCCAAATTTGCAGTGGAGTAGATCGAGGATAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * * * * *
68676660 AAATCTTATCTCTCTGAAGTTACAGTAGAGCAAATTAAAGCT-C
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * * * *
68676703 TAAACCTTATCTCTCT-TA--T--AGTGGAGCAGGTAGAAGATAGC
1 -AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * * * *
68676744 AAATCTTATTTCCCTGAGGTTACAGTGGAACAGATTAAAGCTATCAAAGCAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT------AC
68676796 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
68676832 AAAGTGACAA
Statistics
Matches: 683, Mismatches: 204, Indels: 99
0.69 0.21 0.10
Matches are distributed among these distances:
39 13 0.02
40 12 0.02
41 2 0.00
42 1 0.00
43 80 0.12
44 218 0.32
45 212 0.31
46 2 0.00
47 5 0.01
48 26 0.04
49 44 0.06
50 5 0.01
51 27 0.04
52 35 0.05
53 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
Found at i:68676042 original size:49 final size:45
Alignment explanation
Indices: 68675848--68676088 Score: 142
Period size: 43 Copynumber: 5.4 Consensus size: 45
68675838 TCATTATGGA
* * *
68675848 AAATCTCATCTCCCT-AAGGTCGCATGGAGCAGATTGAAGCC-AC
1 AAATCTTATCTCCCTGAAGGTAGCATGGAGCAAATTGAAGCCTAC
* * * * * * * * *
68675891 GAATCTTATCTCGCTGAA-GTTGCAGTGGAGTAGA-TCAATCATAGA
1 AAATCTTATCTCCCTGAAGGTAGCA-TGGAGCAAATTGAAGCCTA-C
* * * * ** *
68675936 AAACCTTATCTCTCT-AA-GTCGCAGAGGAGCAGGTTGAAG-TTAC
1 AAATCTTATCTCCCTGAAGGTAGCA-TGGAGCAAATTGAAGCCTAC
*
68675979 AAATCTTATCTCCCTGAA-GTAGCAGTGGAGCATATTGAAGACAGACTAC
1 AAATCTTATCTCCCTGAAGGTAGCA-TGGAGCAAATTGAAG-C---CTAC
* *
68676028 AAATCTCATCTCCCT-AAGGTTGCATGGAGCAAATTGAAGCC-AC
1 AAATCTTATCTCCCTGAAGGTAGCATGGAGCAAATTGAAGCCTAC
68676071 AAATCTTATCTCCCTGAA
1 AAATCTTATCTCCCTGAA
68676089 TTTTCAGTTG
Statistics
Matches: 154, Mismatches: 31, Indels: 25
0.73 0.15 0.12
Matches are distributed among these distances:
43 50 0.32
44 50 0.32
45 15 0.10
47 1 0.01
48 16 0.10
49 22 0.14
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (45 bp):
AAATCTTATCTCCCTGAAGGTAGCATGGAGCAAATTGAAGCCTAC
Found at i:68676108 original size:92 final size:90
Alignment explanation
Indices: 68675846--68676110 Score: 293
Period size: 92 Copynumber: 2.9 Consensus size: 90
68675836 AGTCATTATG
* *
68675846 GAAAATCTCATCTCCCTAAGGTCGCATGGAGCAGATTGAAGCCACGAATCTTATCTCGCTGAAGT
1 GAAAATCTCATCTCCCTAAGGTCGCATGGAGCAGATTGAAGCCACAAATCTTATCTCCCTGAAGT
* * *
68675911 TGCAGTGGAGTAGA-TCAA-TCATA
66 TGCAGTGGAGTAGATTGAAGACAGA
* * * * * **
68675934 GAAAACCTTATCTCTCTAA-GTCGCAGAGGAGCAGGTTGAAGTTACAAATCTTATCTCCCTGAAG
1 GAAAATCTCATCTCCCTAAGGTCGCA-TGGAGCAGATTGAAGCCACAAATCTTATCTCCCTGAAG
* * *
68675998 TAGCAGTGGAGCATATTGAAGACAGA
65 TTGCAGTGGAGTAGATTGAAGACAGA
* * *
68676024 CTACAAATCTCATCTCCCTAAGGTTGCATGGAGCAAATTGAAGCCACAAATCTTATCTCCCTGAA
1 -GA-AAATCTCATCTCCCTAAGGTCGCATGGAGCAGATTGAAGCCACAAATCTTATCTCCCTGAA
* * *
68676089 TTTTCAGTTGAGTAGATTGAAG
64 GTTGCAGTGGAGTAGATTGAAG
68676111 TTATAGATCT
Statistics
Matches: 140, Mismatches: 31, Indels: 8
0.78 0.17 0.04
Matches are distributed among these distances:
87 6 0.04
88 60 0.43
89 3 0.02
90 3 0.02
91 1 0.01
92 62 0.44
93 5 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (90 bp):
GAAAATCTCATCTCCCTAAGGTCGCATGGAGCAGATTGAAGCCACAAATCTTATCTCCCTGAAGT
TGCAGTGGAGTAGATTGAAGACAGA
Found at i:68676191 original size:89 final size:88
Alignment explanation
Indices: 68676075--68676508 Score: 291
Period size: 89 Copynumber: 4.8 Consensus size: 88
68676065 AGCCACAAAT
* * * * *
68676075 CTTATCTCCCTGAATTTTCAGTTGAGTAGATTGAAGTTATAGATCTTATCTCCCTGAAGTTACAA
1 CTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGTTATA-ATCTTATCTCCCTGAAGTTGCAA
*
68676140 TGGAGTAGATCGATCATAGAAAAC
65 TGGAGCAGATCGATCATAGAAAAC
* * * * * * * *
68676164 CTTATCTTCCTGAAGTCGCAGTGGAGTAGGTTAAAGATACCAAATCTTATCTCCTTGGAGTTGTA
1 CTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGTTA--TAATCTTATCTCCCTGAAGTTGCA
* * ** *
68676229 GTGGAGCAGATTGAGGATAGGCTACAAAT
64 ATGGAGCAGATCGATCATA-G--A-AAAC
* * * * ** * *
68676258 CTCATCTCCCTGAGGTTGCA-TGGAGCAGATTGAAGCCACAACTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGTTATAA-TCTTATCTCCCTGAAGTTGCAA
*
68676322 TGGAGTAGATCGATCATAGAAAAC
65 TGGAGCAGATCGATCATAGAAAAC
* ** * * * *
68676346 CTTATC-TCTCTAAAGTCACAGTGGAGCAGGTTGAAGTTATAAGTCTTATCCCCCTCAAGTTGCA
1 CTTATCTTC-CTGAAGTTGCAGTGGAGTAGATTGAAGTTATAA-TCTTATCTCCCTGAAGTTGCA
* * ** * *
68676410 ATGAAGCAG-GCTGAAGATAGCAAAT
64 ATGGAGCAGATC-GATCATAGAAAAC
* * * ** *
68676435 CATATC-TCTTTGAAGTTGCAGTGGAGTAGATTAAAGTCGTAGATCTTATCTCCCTGAAGTGGCA
1 CTTATCTTC-CTGAAGTTGCAGTGGAGTAGATTGAAGTTATA-ATCTTATCTCCCTGAAGTTGCA
*
68676499 TTGGAGCAGA
64 ATGGAGCAGA
68676509 CTGAAGATAG
Statistics
Matches: 260, Mismatches: 73, Indels: 23
0.73 0.21 0.06
Matches are distributed among these distances:
87 1 0.00
88 16 0.06
89 139 0.53
90 33 0.13
91 5 0.02
92 33 0.13
93 14 0.05
94 19 0.07
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (88 bp):
CTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGTTATAATCTTATCTCCCTGAAGTTGCAAT
GGAGCAGATCGATCATAGAAAAC
Found at i:68676284 original size:226 final size:224
Alignment explanation
Indices: 68675893--68676331 Score: 646
Period size: 226 Copynumber: 2.0 Consensus size: 224
68675883 GAAGCCACGA
* * *
68675893 ATCTTATCTCGCTGAAGTTGCAGTGGAGTAGATCAATCATAGAAAACCTTATCTCTCTAAGTCGC
1 ATCTTATCTCCCTGAAGTTACAATGGAGTAGATCAATCATAGAAAACCTTATCTCTCTAAGTCGC
* * *
68675958 AGAGGAGCAGGTTGAAGTTACAAATCTTATCTCCCTGAAGTAGCAGTGGAGCATATTGAAGACAG
66 AGAGGAGCAGGTTAAAGATACAAATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGACAG
68676023 ACTACAAATCTCATCTCCCTAAGGTTGCATGGAGCAAATTGAAGCCACAAATCTTATCTCCCTGA
131 ACTACAAATCTCATCTCCCTAAGGTTGCATGGAGCAAATTGAAGCCACAAATCTTATCTCCCTGA
* * *
68676088 ATTTTCAGTTGAGTAGATTGAAGTTATAG
196 AGTTGCAGTGGAGTAGATTGAAGTTATAG
*
68676117 ATCTTATCTCCCTGAAGTTACAATGGAGTAGATCGATCATAGAAAACCTTATCT-TCCTGAAGTC
1 ATCTTATCTCCCTGAAGTTACAATGGAGTAGATCAATCATAGAAAACCTTATCTCT-CT-AAGTC
* * * * * * *
68676181 GCAGTGGAGTAGGTTAAAGATACCAAATCTTATCTCCTTGGAGTTGTAGTGGAGCAGATTGAGGA
64 GCAGAGGAGCAGGTTAAAGATA-CAAATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGA
* * * * *
68676246 TAGGCTACAAATCTCATCTCCCTGAGGTTGCATGGAGCAGATTGAAGCCACAACTCTTATCTCCC
128 CAGACTACAAATCTCATCTCCCTAAGGTTGCATGGAGCAAATTGAAGCCACAAATCTTATCTCCC
68676311 TGAAGTTGCAGTGGAGTAGAT
193 TGAAGTTGCAGTGGAGTAGAT
68676332 CGATCATAGA
Statistics
Matches: 190, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
223 1 0.01
224 52 0.27
225 23 0.12
226 114 0.60
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (224 bp):
ATCTTATCTCCCTGAAGTTACAATGGAGTAGATCAATCATAGAAAACCTTATCTCTCTAAGTCGC
AGAGGAGCAGGTTAAAGATACAAATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGACAG
ACTACAAATCTCATCTCCCTAAGGTTGCATGGAGCAAATTGAAGCCACAAATCTTATCTCCCTGA
AGTTGCAGTGGAGTAGATTGAAGTTATAG
Found at i:68676460 original size:226 final size:225
Alignment explanation
Indices: 68675916--68676466 Score: 574
Period size: 226 Copynumber: 2.4 Consensus size: 225
68675906 GAAGTTGCAG
* * * * *
68675916 TGGAGTAGATC-AATCATAGAAAACCTTATCTCTCT-AAGTCGCAGA-GGAGCAGGTTGAAGTTA
1 TGGAGCAGATCGAA-CATAGAAAACCTTATCCCCCTCAAGTCGCA-ATGAAGCAGGTTGAAGATA
* * *
68675978 CAAATCTTATCTCCCTGAAGTAGCAGTGGAGCATATTGAAGACAGACTACAAATCTCATCTCCCT
64 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGACAGACTACAAATCTCATCTCCCT
* * * *
68676043 AAGGTTGCATGGAGCAAATTGAAGCCACAAATCTTATCTCCCTGAATTTTCAGTTGAGTAGATTG
129 AAGGTTGCATGGAGCAAATTGAAGCCACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCG
* * * *
68676108 AAGTTATAGATCTTATCTCCCTGAAGTTACAA
194 AAGTCATAGACCTTATCTCCCTAAAGTCACAA
* * ** * * * * *
68676140 TGGAGTAGATCGATCATAGAAAACCTTATCTTCCTGAAGTCGCAGTGGAGTAGGTTAAAGATACC
1 TGGAGCAGATCGAACATAGAAAACCTTATCCCCCTCAAGTCGCAATGAAGCAGGTTGAAGATA-C
* * * * * *
68676205 AAATCTTATCTCCTTGGAGTTGTAGTGGAGCAGATTGAGGATAGGCTACAAATCTCATCTCCCTG
65 AAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGACAGACTACAAATCTCATCTCCCTA
* *
68676270 AGGTTGCATGGAGCAGATTGAAGCCACAACTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCG-
130 AGGTTGCATGGAGCAAATTGAAGCCACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGA
* *
68676334 A-TCATAGAAAACCTTATCTCTCTAAAGTCACAG
195 AGTCATAG---ACCTTATCTCCCTAAAGTCACAA
* * ** * ** * *
68676367 TGGAGCAGGTTGAAGTTA-TAAGTCTTATCCCCCTCAAGTTGCAATGAAGCAGGCTGAAGATAGC
1 TGGAGCAGATCGAACATAGAAAACCTTATCCCCCTCAAGTCGCAATGAAGCAGGTTGAAGATA-C
* * *
68676431 AAATCATATCTCTTTGAAGTTGCAGTGGAGTAGATT
65 AAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATT
68676467 AAAGTCGTAG
Statistics
Matches: 268, Mismatches: 52, Indels: 12
0.81 0.16 0.04
Matches are distributed among these distances:
224 35 0.13
225 24 0.09
226 179 0.67
227 30 0.11
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (225 bp):
TGGAGCAGATCGAACATAGAAAACCTTATCCCCCTCAAGTCGCAATGAAGCAGGTTGAAGATACA
AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGACAGACTACAAATCTCATCTCCCTAA
GGTTGCATGGAGCAAATTGAAGCCACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAA
GTCATAGACCTTATCTCCCTAAAGTCACAA
Found at i:68676557 original size:89 final size:89
Alignment explanation
Indices: 68676389--68676558 Score: 205
Period size: 89 Copynumber: 1.9 Consensus size: 89
68676379 AAGTTATAAG
* * **
68676389 TCTTATCCCCCTCAAGTTGCAATGAAGCAGGCTGAAGATAGCAAATCATATCTCTTTGAAGTTGC
1 TCTTATCCCCCTCAAGTGGCAATGAAGCAGACTGAAGATAGCAAATCATATCTCCCTGAAGTTGC
* **
68676454 AGTGGAGTAGATTAAAGTCGTAGA
66 AATGGAACAGATTAAAGTCGTAGA
* * * * * * *
68676478 TCTTATCTCCCTGAAGTGGCATTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGC
1 TCTTATCCCCCTCAAGTGGCAATGAAGCAGACTGAAGATAGCAAATCATATCTCCCTGAAGTTGC
*
68676543 AATGGAACATATTAAA
66 AATGGAACAGATTAAA
68676559 ACTACAAATT
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
89 66 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (89 bp):
TCTTATCCCCCTCAAGTGGCAATGAAGCAGACTGAAGATAGCAAATCATATCTCCCTGAAGTTGC
AATGGAACAGATTAAAGTCGTAGA
Found at i:68676697 original size:140 final size:140
Alignment explanation
Indices: 68676430--68676698 Score: 301
Period size: 140 Copynumber: 1.9 Consensus size: 140
68676420 CTGAAGATAG
* * * * **
68676430 CAAATCATATCTCTTTGAAGTTGCAGTGGAGTAGATTAAAGTCGTAGATCTTATCTCCCTGAAGT
1 CAAATCATATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGTCGCAGATCTTATCTCCCCAAAGT
* * * * * *
68676495 GGCATTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAATGGAACATATTAAAA
66 GGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTACAATAGAACAAATTAAAA
68676560 CTACAAATTA
131 CTACAAATTA
*
68676570 CAAATC-TAATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAG-CTGCAGATGTTATCTCCCCAAA
1 CAAATCAT-ATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGTC-GCAGATCTTATCTCCCCAAA
* * * * * * * *
68676633 TTTGCAGTGGAGTAGA-TCGAGGATAGTAAATCTTATCTCTCTGAAGTTACAGTAGAGCAAATTA
64 GTGGCAGTGGAGCAGACT-GAAGATAGCAAATCTTATCTCCCTGAAGTTACAATAGAACAAATTA
68676697 AA
128 AA
68676699 GCTCTAAACC
Statistics
Matches: 105, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
139 3 0.03
140 102 0.97
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (140 bp):
CAAATCATATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGTCGCAGATCTTATCTCCCCAAAGT
GGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTACAATAGAACAAATTAAAA
CTACAAATTA
Found at i:68677449 original size:21 final size:21
Alignment explanation
Indices: 68677425--68677474 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
68677415 ATTCAATAAA
68677425 AAACAATAAAAAAGAGATCAT
1 AAACAATAAAAAAGAGATCAT
68677446 AAACAATAAAAAAGAGATCAT
1 AAACAATAAAAAAGAGATCAT
68677467 AAA-AATAA
1 AAACAATAA
68677475 GTAATAAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 5 0.17
21 24 0.83
ACGTcount: A:0.70, C:0.08, G:0.08, T:0.14
Consensus pattern (21 bp):
AAACAATAAAAAAGAGATCAT
Found at i:68686248 original size:29 final size:29
Alignment explanation
Indices: 68686186--68686251 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
68686176 TTCTTTTTGG
*
68686186 AAAAGAAAGCCAAAATTTTAAAAGTGGGA
1 AAAATAAAGCCAAAATTTTAAAAGTGGGA
*
68686215 AAAATAAAGCCAAAATTTTGAAAGTGGGA
1 AAAATAAAGCCAAAATTTTAAAAGTGGGA
68686244 AAAATAAA
1 AAAATAAA
68686252 AATAAAATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.58, C:0.06, G:0.18, T:0.18
Consensus pattern (29 bp):
AAAATAAAGCCAAAATTTTAAAAGTGGGA
Found at i:68686258 original size:29 final size:29
Alignment explanation
Indices: 68686196--68686259 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
68686186 AAAAGAAAGC
**
68686196 CAAAATTTTAAAAGTGGGAAAAATAAAGC
1 CAAAATTTTAAAAGTGGGAAAAATAAAAA
*
68686225 CAAAATTTTGAAAGTGGGAAAAATAAAAA
1 CAAAATTTTAAAAGTGGGAAAAATAAAAA
*
68686254 TAAAAT
1 CAAAAT
68686260 ACCAATAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.58, C:0.05, G:0.16, T:0.22
Consensus pattern (29 bp):
CAAAATTTTAAAAGTGGGAAAAATAAAAA
Found at i:68691163 original size:27 final size:27
Alignment explanation
Indices: 68691126--68691184 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
68691116 AAGCCCCCCC
68691126 AAAAAAACCTAACCCAAAAAAAAAAGA
1 AAAAAAACCTAACCCAAAAAAAAAAGA
* *
68691153 AAAAAAACCTAACTCTAAAAAAAAAGA
1 AAAAAAACCTAACCCAAAAAAAAAAGA
68691180 AAAAA
1 AAAAA
68691185 GAAAAACCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.75, C:0.15, G:0.03, T:0.07
Consensus pattern (27 bp):
AAAAAAACCTAACCCAAAAAAAAAAGA
Found at i:68691172 original size:26 final size:28
Alignment explanation
Indices: 68691126--68691198 Score: 94
Period size: 27 Copynumber: 2.5 Consensus size: 28
68691116 AAGCCCCCCC
68691126 AAAAAAACCTAACCC-AAAAAAAAAAGA
1 AAAAAAACCTAACCCAAAAAAAAAAAGA
* *
68691153 AAAAAAACCTAACTCTAAAAAAAAAGAAAA
1 AAAAAAACCTAAC-CCAAAAAAAAA-AAGA
68691183 AAGAAAAACCTAACCC
1 AA-AAAAACCTAACCC
68691199 CCCAAAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 13 0.33
28 1 0.03
29 8 0.21
30 6 0.15
31 11 0.28
ACGTcount: A:0.70, C:0.19, G:0.04, T:0.07
Consensus pattern (28 bp):
AAAAAAACCTAACCCAAAAAAAAAAAGA
Found at i:68691206 original size:31 final size:30
Alignment explanation
Indices: 68691126--68691209 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 30
68691116 AAGCCCCCCC
68691126 AAAAAAACCTAA---CCCAAAAAAAAAAGA
1 AAAAAAACCTAACCCCCCAAAAAAAAAAGA
* ** *
68691153 AAAAAAACCTAA-CTCTAAAAAAAAAGAAAA
1 AAAAAAACCTAACCCCCCAAAAAAAA-AAGA
68691183 AAGAAAAACCTAACCCCCCAAAAAAAA
1 AA-AAAAACCTAACCCCCCAAAAAAAA
68691210 CTAAAAAACC
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 12 0.26
29 9 0.20
30 5 0.11
31 10 0.22
32 10 0.22
ACGTcount: A:0.70, C:0.20, G:0.04, T:0.06
Consensus pattern (30 bp):
AAAAAAACCTAACCCCCCAAAAAAAAAAGA
Found at i:68696132 original size:40 final size:40
Alignment explanation
Indices: 68696057--68696147 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
68696047 CTATGTTTGG
* * * *
68696057 CACTTAGTGTACGTTTCGAGATAGCTTCGGCTATATATAA
1 CACTTAGTGTGCGTATCGAGATAACTTCAGCTATATATAA
* *
68696097 CACTTAGTGTGCGTATCG-GAATAACTTCAGTTATATATGA
1 CACTTAGTGTGCGTATCGAG-ATAACTTCAGCTATATATAA
68696137 CACTTAGTGTG
1 CACTTAGTGTG
68696148 TGAGACCAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
39 1 0.02
40 43 0.98
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (40 bp):
CACTTAGTGTGCGTATCGAGATAACTTCAGCTATATATAA
Found at i:68697981 original size:13 final size:13
Alignment explanation
Indices: 68697963--68697987 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68697953 AATTCCACAC
68697963 ACCCGTGTGGACT
1 ACCCGTGTGGACT
68697976 ACCCGTGTGGAC
1 ACCCGTGTGGAC
68697988 CCACATGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.20
Consensus pattern (13 bp):
ACCCGTGTGGACT
Found at i:68699601 original size:12 final size:11
Alignment explanation
Indices: 68699579--68699623 Score: 56
Period size: 12 Copynumber: 4.0 Consensus size: 11
68699569 ATTTAGCCAT
68699579 TTTTA-TTTTA
1 TTTTATTTTTA
68699589 TTTTACTTTTTA
1 TTTTA-TTTTTA
68699601 TTTTATTTTTA
1 TTTTATTTTTA
*
68699612 GTTTAATTTTTA
1 -TTTTATTTTTA
68699624 CATTCTAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 5 0.16
11 6 0.19
12 20 0.65
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:68700774 original size:3 final size:3
Alignment explanation
Indices: 68700766--68700879 Score: 56
Period size: 3 Copynumber: 39.0 Consensus size: 3
68700756 AACGAAAACG
* * * * *
68700766 ATA ATA ATA ATA GTA AT- ATAA ATA ATG ATA ATA GTG GTA A-A AT-
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
68700809 ATG ATA ATA CTA ATG ATA ATA ATA ATA GTC AT- ATA AGA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
68700856 TTA GTA ATA ATA ATA ATG ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA
68700880 CAAATAATGC
Statistics
Matches: 81, Mismatches: 25, Indels: 10
0.70 0.22 0.09
Matches are distributed among these distances:
2 8 0.10
3 71 0.88
4 2 0.02
ACGTcount: A:0.54, C:0.02, G:0.10, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:68701245 original size:21 final size:21
Alignment explanation
Indices: 68701221--68701286 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
68701211 GTATGTACAT
*
68701221 AATATGTACATGATATATAAA
1 AATATGTACATAATATATAAA
*
68701242 AATA--TACATAATATATTAA
1 AATATGTACATAATATATAAA
*
68701261 AATATAG-ACATAATATACAAA
1 AATAT-GTACATAATATATAAA
68701282 AATAT
1 AATAT
68701287 ATATATAACA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
19 17 0.45
21 21 0.55
ACGTcount: A:0.58, C:0.06, G:0.05, T:0.32
Consensus pattern (21 bp):
AATATGTACATAATATATAAA
Found at i:68701255 original size:19 final size:19
Alignment explanation
Indices: 68701227--68701287 Score: 77
Period size: 19 Copynumber: 3.1 Consensus size: 19
68701217 ACATAATATG
*
68701227 TACATGATATATAAAAATA
1 TACATAATATATAAAAATA
68701246 TACATAATATATTAAAATATA
1 TACATAATATA-TAAAA-ATA
* *
68701267 GACATAATATACAAAAATA
1 TACATAATATATAAAAATA
68701286 TA
1 TA
68701288 TATATAACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 14 0.39
20 9 0.25
21 13 0.36
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (19 bp):
TACATAATATATAAAAATA
Found at i:68701287 original size:21 final size:20
Alignment explanation
Indices: 68701228--68701287 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 20
68701218 CATAATATGT
*
68701228 ACATGATATATAAAAATAT-
1 ACATAATATATAAAAATATA
*
68701247 ACATAATATATTAAAATATA
1 ACATAATATATAAAAATATA
*
68701267 GACATAATATACAAAAATATA
1 -ACATAATATATAAAAATATA
68701288 TATATAACAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 17 0.49
21 18 0.51
ACGTcount: A:0.60, C:0.07, G:0.03, T:0.30
Consensus pattern (20 bp):
ACATAATATATAAAAATATA
Found at i:68701294 original size:21 final size:21
Alignment explanation
Indices: 68701221--68701294 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 21
68701211 GTATGTACAT
* * *
68701221 AATATGTACATGATATA-TAA
1 AATATATACATAATATACAAA
**
68701241 AA-ATATACATAATATATTAA
1 AATATATACATAATATACAAA
*
68701261 AATATAGACATAATATACAAA
1 AATATATACATAATATACAAA
*
68701282 AATATATATATAA
1 AATATATACATAA
68701295 CATTCGAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
19 12 0.27
20 7 0.16
21 26 0.58
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.32
Consensus pattern (21 bp):
AATATATACATAATATACAAA
Found at i:68704437 original size:60 final size:60
Alignment explanation
Indices: 68704345--68704484 Score: 158
Period size: 60 Copynumber: 2.3 Consensus size: 60
68704335 CAGAGTTAAT
* * * *
68704345 TGGGCCTTAGCCCATATCAATATTAATCTGGGTCATAGCCC-CTTACAATATT-AGAGTATAC
1 TGGGCC-TAGCCCATATTAATATCAATATGGGTCATAGCCCTATTACAA-ATTGAGA-TATAC
* * * *
68704406 TGGGCCTAGCCCATATTAGTATCAATATGGGTCGTAGCCCTATTACAAGTTGAGATATAT
1 TGGGCCTAGCCCATATTAATATCAATATGGGTCATAGCCCTATTACAAATTGAGATATAC
*
68704466 TGGGCCTTGCCCATATTAA
1 TGGGCCTAGCCCATATTAA
68704485 CACCGTTGGG
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
60 52 0.78
61 15 0.22
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (60 bp):
TGGGCCTAGCCCATATTAATATCAATATGGGTCATAGCCCTATTACAAATTGAGATATAC
Found at i:68709313 original size:13 final size:13
Alignment explanation
Indices: 68709295--68709422 Score: 58
Period size: 13 Copynumber: 10.2 Consensus size: 13
68709285 ATTTTCCCTA
68709295 TTATTATTTTATT
1 TTATTATTTTATT
68709308 TTATTATTTTATT
1 TTATTATTTTATT
* *
68709321 ATTTTTATTTT-CT
1 -TTATTATTTTATT
*
68709334 TTA--AATTTATT
1 TTATTATTTTATT
68709345 TGT-TTA-TTTA-T
1 T-TATTATTTTATT
*
68709356 TTATTTATCTTATT
1 TTA-TTATTTTATT
** * *
68709370 TTCCTACTTAATT
1 TTATTATTTTATT
*
68709383 TTATTAGTTTTATAG
1 TTATTA-TTTTAT-T
68709398 TTATTA--TTA-T
1 TTATTATTTTATT
*
68709408 TTGTTATTTTATT
1 TTATTATTTTATT
68709421 TT
1 TT
68709423 CCGTCTTATT
Statistics
Matches: 83, Mismatches: 18, Indels: 28
0.64 0.14 0.22
Matches are distributed among these distances:
10 10 0.12
11 4 0.05
12 16 0.19
13 31 0.37
14 16 0.19
15 6 0.07
ACGTcount: A:0.23, C:0.04, G:0.03, T:0.70
Consensus pattern (13 bp):
TTATTATTTTATT
Found at i:68709314 original size:8 final size:8
Alignment explanation
Indices: 68709293--68709325 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
68709283 CTATTTTCCC
68709293 TATTATTAT
1 TATTATT-T
68709302 T-TTATTT
1 TATTATTT
68709309 TATTATTT
1 TATTATTT
68709317 TATTATTT
1 TATTATTT
68709325 T
1 T
68709326 TATTTTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 2 0.09
8 20 0.87
9 1 0.04
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTATTT
Found at i:68709498 original size:22 final size:22
Alignment explanation
Indices: 68709453--68709495 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
68709443 TTATCATTAA
*
68709453 TTTACTATTTTATAAGTATTTG
1 TTTACTATTTTATAACTATTTG
*
68709475 TTTACTACTTTTATTACTATT
1 TTTACTA-TTTTATAACTATT
68709496 GTTATTGTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.26, C:0.09, G:0.05, T:0.60
Consensus pattern (22 bp):
TTTACTATTTTATAACTATTTG
Found at i:68709661 original size:16 final size:15
Alignment explanation
Indices: 68709630--68709665 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
68709620 TTCCACTTTG
*
68709630 TTTCTTATTTTTATT
1 TTTCTTATTATTATT
68709645 TTTCTTCATTATTATT
1 TTTCTT-ATTATTATT
68709661 TTTCT
1 TTTCT
68709666 CACTTCTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTCTTATTATTATT
Found at i:68711138 original size:20 final size:20
Alignment explanation
Indices: 68711115--68711170 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
68711105 TGAGTTTATT
68711115 TGTTTTATTTTTAGTTTTT-A
1 TGTTTTATTTTTA-TTTTTGA
*
68711135 TG-TTTATTTTTATTTTTGT
1 TGTTTTATTTTTATTTTTGA
*
68711154 TGTTTCATTTTTATTTT
1 TGTTTTATTTTTATTTT
68711171 CTTAGACTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.16
19 12 0.38
20 15 0.47
ACGTcount: A:0.12, C:0.02, G:0.09, T:0.77
Consensus pattern (20 bp):
TGTTTTATTTTTATTTTTGA
Found at i:68711140 original size:19 final size:19
Alignment explanation
Indices: 68711118--68711170 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 19
68711108 GTTTATTTGT
68711118 TTTATTTTTAGTTTTT-ATG
1 TTTATTTTTA-TTTTTGATG
*
68711137 TTTATTTTTATTTTTGTTG
1 TTTATTTTTATTTTTGATG
68711156 TTTCATTTTTATTTT
1 TTT-ATTTTTATTTT
68711171 CTTAGACTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
18 5 0.16
19 15 0.48
20 11 0.35
ACGTcount: A:0.13, C:0.02, G:0.08, T:0.77
Consensus pattern (19 bp):
TTTATTTTTATTTTTGATG
Found at i:68711148 original size:6 final size:6
Alignment explanation
Indices: 68711117--68711170 Score: 63
Period size: 6 Copynumber: 8.5 Consensus size: 6
68711107 AGTTTATTTG
* *
68711117 TTTTAT TTTTAGT TTTTAT GTTTAT TTTTAT TTTTGT TGTTTCAT TTTTAT
1 TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT T-TTT-AT TTTTAT
68711168 TTT
1 TTT
68711171 CTTAGACTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
6 27 0.66
7 12 0.29
8 2 0.05
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:68715890 original size:9 final size:10
Alignment explanation
Indices: 68715868--68715892 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
68715858 AATAAAGCCG
68715868 TTTTAATTAT
1 TTTTAATTAT
68715878 TTTTAATTAT
1 TTTTAATTAT
68715888 TTTTA
1 TTTTA
68715893 GTATGTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTAATTAT
Found at i:68718042 original size:28 final size:28
Alignment explanation
Indices: 68717964--68718042 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 28
68717954 AACTCTAGTG
68717964 TGTGCAAACCCCTTA-TGCGAG--CCCT
1 TGTGCAAACCCCTTAGTGCGAGCCCCCT
* * * *
68717989 TAGTTGGAATCCCCTTTGTGCAAGCCCCCT
1 T-G-TGCAAACCCCTTAGTGCGAGCCCCCT
*
68718019 TGTGCAAACCCCTTAGTGTGAGCC
1 TGTGCAAACCCCTTAGTGCGAGCC
68718043 TTATGCACAA
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
25 1 0.03
26 1 0.03
27 10 0.25
28 22 0.55
29 1 0.03
30 5 0.12
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.27
Consensus pattern (28 bp):
TGTGCAAACCCCTTAGTGCGAGCCCCCT
Found at i:68718274 original size:36 final size:36
Alignment explanation
Indices: 68718223--68718298 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
68718213 CGAACCTAAA
68718223 CTATATATTTCATGCAAACCCTAAGAATATGCGAGC
1 CTATATATTTCATGCAAACCCTAAGAATATGCGAGC
* *
68718259 CTATATATGTT-ATGCAAACCCTAGGAATATGTGAGC
1 CTATATAT-TTCATGCAAACCCTAAGAATATGCGAGC
68718295 CTAT
1 CTAT
68718299 GCGTTATGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (36 bp):
CTATATATTTCATGCAAACCCTAAGAATATGCGAGC
Found at i:68722249 original size:7 final size:7
Alignment explanation
Indices: 68722181--68722316 Score: 57
Period size: 7 Copynumber: 18.1 Consensus size: 7
68722171 ATCCTATAAA
68722181 TATATATT
1 TATAT-TT
68722189 TATATTGT
1 TATATT-T
68722197 TAT-TTGT
1 TATATT-T
*
68722204 TTTATCTT
1 TATAT-TT
68722212 TA-ATTT
1 TATATTT
68722218 TA-ATTTT
1 TATA-TTT
*
68722225 TATGTTT
1 TATATTT
68722232 TATATTT
1 TATATTT
68722239 TATATTT
1 TATATTT
*
68722246 TATAATAT
1 TAT-ATTT
68722254 TATTATTTAT
1 TA-TA-TT-T
*
68722264 TATATAT
1 TATATTT
*
68722271 TATATAT
1 TATATTT
68722278 TAT-TTT
1 TATATTT
*
68722284 TCATGA-AT
1 T-AT-ATTT
68722292 TATTATTT
1 TA-TATTT
68722300 TATTATTAT
1 TA-TATT-T
68722309 TATATTT
1 TATATTT
68722316 T
1 T
68722317 CGCTTATATT
Statistics
Matches: 103, Mismatches: 10, Indels: 31
0.72 0.07 0.22
Matches are distributed among these distances:
6 8 0.08
7 50 0.49
8 34 0.33
9 8 0.08
10 3 0.03
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.66
Consensus pattern (7 bp):
TATATTT
Found at i:68722259 original size:3 final size:3
Alignment explanation
Indices: 68722251--68722311 Score: 52
Period size: 3 Copynumber: 19.0 Consensus size: 3
68722241 TATTTTATAA
* *
68722251 TAT TAT TATT TAT TAT ATAT TAT ATAT TAT TTT TCAT GAAT TAT TAT
1 TAT TAT TA-T TAT TAT -TAT TAT -TAT TAT TAT T-AT -TAT TAT TAT
68722298 T-T TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT
68722312 ATTTTCGCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
2 2 0.04
3 34 0.71
4 12 0.25
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:68722310 original size:17 final size:17
Alignment explanation
Indices: 68722229--68722316 Score: 62
Period size: 17 Copynumber: 5.2 Consensus size: 17
68722219 AATTTTTATG
68722229 TTTTA-TATT-TTA-TA
1 TTTTATTATTATTATTA
68722243 TTTTATAATATTATTATT-
1 TTTTAT--TATTATTATTA
*
68722261 TATTATATATTATATATTA
1 TTTTAT-TATTAT-TATTA
* *
68722280 TTTT-TCATGAATTATTA
1 TTTTATTAT-TATTATTA
68722297 TTTTATTATTATTA-TA
1 TTTTATTATTATTATTA
68722313 TTTT
1 TTTT
68722317 CGCTTATATT
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
14 5 0.08
16 6 0.10
17 26 0.44
18 18 0.31
19 4 0.07
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (17 bp):
TTTTATTATTATTATTA
Found at i:68722674 original size:26 final size:27
Alignment explanation
Indices: 68722618--68722675 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
68722608 TTTAAAAATG
*
68722618 ATATTTTTATATTCTTTTATATACTCT
1 ATATTTTTATATTCTTTTATATACTAT
68722645 -TATTTTTATATTCTTTTA-A-ACTAAT
1 ATATTTTTATATTCTTTTATATACT-AT
68722670 ATATTT
1 ATATTT
68722676 CCTATGCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 3 0.11
25 2 0.07
26 23 0.82
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (27 bp):
ATATTTTTATATTCTTTTATATACTAT
Found at i:68735128 original size:120 final size:119
Alignment explanation
Indices: 68734581--68735264 Score: 1152
Period size: 119 Copynumber: 5.7 Consensus size: 119
68734571 GACAATTAGG
* * *
68734581 CTGAAGCAGATCCAAAATGATTTGGTATTCTTGTGTTTACAAGGAACAAATTGAGGACATAGCAG
1 CTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAG
* *
68734646 ATTTGACTCTCAAACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATA
66 ATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATA
*
68734700 CTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAG
1 CTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAG
*
68734765 ATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATA
66 ATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATA
* *
68734819 CTGAAGCAGATCTAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGAAG
1 CTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAG
* * *
68734884 ATTTGACTCTTAGATGTTCTCAGATATAACAGATCTAACCTTCAGATGTTTAGA
66 ATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATA
* * *
68734938 CTGAAGTAGATCCAAAATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAG
1 CTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAG
*
68735003 ATTTGACTCTCAGATGTTCTTAGATATAGCAGATCTAACCTTCAGATGTTTATA
66 ATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATA
* *
68735057 CTGAAGCAAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAATAAATCGAGGACATAGCA
1 CTGAAGC-AGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCA
* *
68735122 GATTTGACTCTCAGATGTTCTTAGATATAGCAGATCTAACCTTCAGATGTTTATC
65 GATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATA
* *
68735177 CTGAAGCAAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGTA
1 CTGAAGC-AGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCA
68735242 GATTTGACTCTCAGATGTTCTCA
65 GATTTGACTCTCAGATGTTCTCA
68735265 AACAGACTCA
Statistics
Matches: 536, Mismatches: 28, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
119 344 0.64
120 192 0.36
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.31
Consensus pattern (119 bp):
CTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAG
ATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATA
Found at i:68737094 original size:6 final size:7
Alignment explanation
Indices: 68737057--68737124 Score: 52
Period size: 7 Copynumber: 9.6 Consensus size: 7
68737047 TAATCATATA
*
68737057 TATATAT
1 TATATTT
68737064 TATATTGT
1 TATATT-T
68737072 TAT-TTGT
1 TATATT-T
*
68737079 TTTATCTT
1 TATAT-TT
68737087 TA-ATTT
1 TATATTT
68737093 TA-ATTTT
1 TATA-TTT
*
68737100 TATGTTT
1 TATATTT
68737107 TATATTT
1 TATATTT
68737114 TATATTT
1 TATATTT
68737121 TATA
1 TATA
68737125 ATATTATTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
6 5 0.10
7 38 0.75
8 7 0.14
9 1 0.02
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.68
Consensus pattern (7 bp):
TATATTT
Found at i:68737542 original size:26 final size:27
Alignment explanation
Indices: 68737486--68737543 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
68737476 TTTAAAAATG
*
68737486 ATATTTTTATATTCTTTTATATACTCT
1 ATATTTTTATATTCTTTTATATACTAT
68737513 -TATTTTTATATTCTTTTA-A-ACTAAT
1 ATATTTTTATATTCTTTTATATACT-AT
68737538 ATATTT
1 ATATTT
68737544 CCTATGCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 3 0.11
25 2 0.07
26 23 0.82
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (27 bp):
ATATTTTTATATTCTTTTATATACTAT
Found at i:68737625 original size:20 final size:21
Alignment explanation
Indices: 68737586--68737625 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
68737576 TATATACTAC
*
68737586 ATATTATATTTTAGAATTATTA
1 ATATCATATTTTA-AATTATTA
68737608 ATATCATATTTT-AATTAT
1 ATATCATATTTTAAATTAT
68737626 GTGTATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (21 bp):
ATATCATATTTTAAATTATTA
Found at i:68739387 original size:6 final size:6
Alignment explanation
Indices: 68739369--68739517 Score: 164
Period size: 6 Copynumber: 24.8 Consensus size: 6
68739359 AACCAAAATG
*
68739369 AGAATC AGGATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* *
68739417 A-ATATT AGTAA-C AGAATT AGAATC AGAATC AGAATC AGAATC AGTAA-C
1 AGA-ATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AG-AATC
* * *
68739465 AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
68739513 AGAAT
1 AGAAT
68739518 TACTTGACAA
Statistics
Matches: 121, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
5 9 0.07
6 105 0.87
7 6 0.05
8 1 0.01
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:68739388 original size:36 final size:34
Alignment explanation
Indices: 68739348--68739542 Score: 146
Period size: 36 Copynumber: 5.9 Consensus size: 34
68739338 AAGAAACATT
* * *
68739348 ATCAGAATTGGAACCAAAATGAGAATCAGGATCAGA
1 ATCAGAATT-GAA-CAGAATCAGAATCAGAATCAGA
68739384 ATCAG---T-AACAGAATCAGAATCAGAATCAGA
1 ATCAGAATTGAACAGAATCAGAATCAGAATCAGA
*
68739414 ATCA-ATATTAGTAACAGAATTAGAATCAGAATCAGA
1 ATCAGA-ATT-G-AACAGAATCAGAATCAGAATCAGA
68739450 ATCAGAA-T---CAGTAA-CAGAATCAGAATCAGA
1 ATCAGAATTGAACAG-AATCAGAATCAGAATCAGA
* *
68739480 ATCAGTATTAGTAACAGAATCAGAATCAAAATCAGA
1 ATCAGAATT-G-AACAGAATCAGAATCAGAATCAGA
* * *
68739516 AT--TACTTG-ACAAAATCAGAATCAGAAT
1 ATCAGAATTGAACAGAATCAGAATCAGAAT
68739543 GTGAATGCAA
Statistics
Matches: 131, Mismatches: 12, Indels: 37
0.73 0.07 0.21
Matches are distributed among these distances:
30 47 0.36
31 22 0.17
33 3 0.02
34 2 0.02
35 3 0.02
36 53 0.40
37 1 0.01
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (34 bp):
ATCAGAATTGAACAGAATCAGAATCAGAATCAGA
Found at i:68739696 original size:27 final size:26
Alignment explanation
Indices: 68739659--68739724 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
68739649 AGCATGGCTG
*
68739659 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
68739685 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
68739712 CCAGAATCAGATA
1 CCAGAA-CAGATA
68739725 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:68739729 original size:27 final size:27
Alignment explanation
Indices: 68739659--68739732 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
68739649 AGCATGGCTG
* *
68739659 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
68739685 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
68739712 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
68739733 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:68739739 original size:27 final size:27
Alignment explanation
Indices: 68739683--68739740 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
68739673 GTGACAGAGT
* * *
68739683 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
68739710 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
68739737 CACC
1 CACC
68739741 TAACAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:68740122 original size:27 final size:26
Alignment explanation
Indices: 68740043--68740125 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
68740033 TCGATCGGTC
* * *
68740043 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
68740069 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
68740096 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
68740123 AAC
1 AAC
68740126 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:68740354 original size:27 final size:27
Alignment explanation
Indices: 68740324--68740493 Score: 162
Period size: 27 Copynumber: 6.3 Consensus size: 27
68740314 GGGGCAAAAT
* *
68740324 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
68740351 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
68740378 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
68740405 GGTAATTCTATCCTATAAGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
68740432 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
68740459 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
68740486 AGTAATTT
1 GGTAATTT
68740494 CACAATCAAT
Statistics
Matches: 123, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 3 0.02
27 117 0.95
28 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:68740371 original size:54 final size:54
Alignment explanation
Indices: 68740313--68740419 Score: 119
Period size: 54 Copynumber: 2.0 Consensus size: 54
68740303 TTAACACCCT
68740313 AGGGGCAAAAT-GGTAATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTAC
1 AGGGG-AAAATCGGT-ATTTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTAC
* ** * * * *
68740367 AGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTATCCTA
1 AGGGGAAAATCGGTATTTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTA
68740420 TAAGGGTATT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
53 6 0.14
54 38 0.86
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (54 bp):
AGGGGAAAATCGGTATTTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTAC
Found at i:68740427 original size:54 final size:54
Alignment explanation
Indices: 68740328--68740494 Score: 201
Period size: 54 Copynumber: 3.1 Consensus size: 54
68740318 CAAAATGGTA
* * *
68740328 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* * * * *
68740381 ATTTCTACCCTACAAGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* * * * *
68740435 AATTCTACCCTATAGGGGTATTTCAGAAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
68740489 AATTTC
1 -ATTTC
68740495 ACAATCAATG
Statistics
Matches: 93, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
53 4 0.04
54 85 0.91
55 4 0.04
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
Found at i:68740534 original size:27 final size:27
Alignment explanation
Indices: 68740504--68740879 Score: 452
Period size: 27 Copynumber: 13.9 Consensus size: 27
68740494 CACAATCAAT
* *
68740504 GGTAAAATGGTAATTTTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
68740531 GGTAAAACGATAATTTTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* * *
68740558 GGTAAACCAGTAATTCTGTAAATCAAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* **
68740585 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
68740612 GGTAAAACGATAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
**
68740639 GGTAAAATAGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
68740666 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** * **
68740693 GGTAAAATAGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** * *
68740720 GGTAAAATAGTAATTTTGTAAATTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
68740747 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
68740774 GGTAAAACAGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
68740801 GGTAAAACGATAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* **
68740828 GGTAAAACGGTAATTTTAAAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
68740855 GGTAAAACAGTAATTCTGTAAATCG
1 GGTAAAACGGTAATTCTGTAAATCG
68740880 GGAGTACTTT
Statistics
Matches: 298, Mismatches: 45, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.01
27 292 0.98
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GGTAAAACGGTAATTCTGTAAATCGAG
Found at i:68742616 original size:15 final size:15
Alignment explanation
Indices: 68742596--68742626 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
68742586 TCTCACATGA
68742596 TGTTTCACATGTTAT
1 TGTTTCACATGTTAT
68742611 TGTTTCACATGTTAT
1 TGTTTCACATGTTAT
68742626 T
1 T
68742627 CAAGTTTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.13, T:0.55
Consensus pattern (15 bp):
TGTTTCACATGTTAT
Found at i:68743412 original size:7 final size:7
Alignment explanation
Indices: 68743381--68743405 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
68743371 AGGAAAATAC
68743381 AAAAGAA
1 AAAAGAA
68743388 AAAAGAA
1 AAAAGAA
68743395 AAAAGAA
1 AAAAGAA
68743402 AAAA
1 AAAA
68743406 AACAAAACCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:68743412 original size:14 final size:14
Alignment explanation
Indices: 68743374--68743412 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
68743364 AAATTTGAGG
*
68743374 AAAATACAAAAGAA
1 AAAAAACAAAAGAA
68743388 AAAAGAA-AAAAGAA
1 AAAA-AACAAAAGAA
68743402 AAAAAACAAAA
1 AAAAAACAAAA
68743413 CCGCGTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 2 0.09
14 19 0.86
15 1 0.05
ACGTcount: A:0.85, C:0.05, G:0.08, T:0.03
Consensus pattern (14 bp):
AAAAAACAAAAGAA
Found at i:68743843 original size:17 final size:17
Alignment explanation
Indices: 68743800--68743834 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
68743790 TATCTCAAAA
* *
68743800 TAAAATTATATTTATAT
1 TAAAATTTTAATTATAT
68743817 TAAAATTTTAATTATAT
1 TAAAATTTTAATTATAT
68743834 T
1 T
68743835 TATATTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TAAAATTTTAATTATAT
Found at i:68745249 original size:8 final size:8
Alignment explanation
Indices: 68745238--68745262 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
68745228 TTATATAATT
68745238 ATTTTAAA
1 ATTTTAAA
68745246 ATTTTAAA
1 ATTTTAAA
68745254 ATTTTAAA
1 ATTTTAAA
68745262 A
1 A
68745263 ACTTAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATTTTAAA
Found at i:68747100 original size:14 final size:16
Alignment explanation
Indices: 68747081--68747112 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
68747071 CATAAAGTAC
68747081 AATAAA-CC-ACAATT
1 AATAAATCCAACAATT
68747095 AATAAATCCAACAATT
1 AATAAATCCAACAATT
68747111 AA
1 AA
68747113 GTACAACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 2 0.12
16 8 0.50
ACGTcount: A:0.59, C:0.19, G:0.00, T:0.22
Consensus pattern (16 bp):
AATAAATCCAACAATT
Found at i:68753489 original size:146 final size:148
Alignment explanation
Indices: 68753225--68753541 Score: 401
Period size: 146 Copynumber: 2.1 Consensus size: 148
68753215 AATGTGTGAT
* **
68753225 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTGAAAGACAGAAATTGAAAATA
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTAA----TTTTTGAAAGACAGAAATTGAAAATA
* *
68753290 CCTCAGCATGTGAACCGAGGCTCAATTCACCTCTCGCAATATAAGTTGATTTTTTTGAA-AACAG
62 CCTCAG-ATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTT-AACAACAA
*
68753354 AAATTGAAAATACCTCAACGTTTC
125 AAATTGAAAATACCTCAACGTGTC
* *
68753378 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTTGAAA-ACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTT-AATTTTTGAAAGACAGAAATTGAAAATACCT
* ** *
68753441 CAG-TGTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAACAACAAAAAT
65 CAGATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTAACAACAAAAAT
* *
68753504 TGAAATTACCTCAGCGTGTC
129 TGAAAATACCTCAACGTGTC
68753524 CTGAGGCTCAACTCATTT
1 CTGAGGCTCAACTCATTT
68753542 TGAATAGAAA
Statistics
Matches: 146, Mismatches: 15, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
145 4 0.03
146 82 0.56
148 21 0.14
149 8 0.05
153 29 0.20
154 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (148 bp):
CTGAGGCTCAACTCATTTCTCGCAATATGAGTTAATTTTTGAAAGACAGAAATTGAAAATACCTC
AGATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTAACAACAAAAATTG
AAAATACCTCAACGTGTC
Found at i:68753534 original size:74 final size:74
Alignment explanation
Indices: 68753225--68753541 Score: 390
Period size: 74 Copynumber: 4.2 Consensus size: 74
68753215 AATGTGTGAT
* ** *
68753225 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTGAAAGACAGAAATTGAAAATA
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTTTGAAA-ACAGAAATTGAAAATA
*
68753290 CCTCAGCATGTGAAC
63 CCTCAGC--GTG-TC
* ** *
68753305 C-GAGGCTCAATTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
* *
68753369 CAACGTTTC
66 CAGCGTGTC
* * *
68753378 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
*
68753441 CAGTGTGTC
66 CAGCGTGTC
* *
68753450 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTT-AACAACAAAAATTGAAATTACC
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAA-AACAGAAATTGAAAATACC
68753514 TCAGCGTGTC
65 TCAGCGTGTC
68753524 CTGAGGCTCAACTCATTT
1 CTGAGGCTCAACTCATTT
68753542 TGAATAGAAA
Statistics
Matches: 212, Mismatches: 21, Indels: 14
0.86 0.09 0.06
Matches are distributed among these distances:
72 66 0.31
73 3 0.01
74 80 0.38
76 22 0.10
77 11 0.05
79 29 0.14
80 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (74 bp):
CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
CAGCGTGTC
Found at i:68753653 original size:72 final size:72
Alignment explanation
Indices: 68753547--68753768 Score: 277
Period size: 72 Copynumber: 3.0 Consensus size: 72
68753537 CATTTTGAAT
68753547 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
1 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
68753612 TGAAAAC
66 TGAAAAC
*
68753619 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTCAATTT
1 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA---
68753684 TTTTTTGAAAGAC
63 --TTTTGAAA-AC
* * * * ** *
68753697 AGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGCTG-A
1 AGAAATTGAAATTACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
68753760 TTTTGAAAA
63 TTTTGAAAA
68753769 AGTAGAAATT
Statistics
Matches: 132, Mismatches: 9, Indels: 17
0.84 0.06 0.11
Matches are distributed among these distances:
72 61 0.46
73 1 0.01
74 8 0.06
77 8 0.06
78 20 0.15
79 1 0.01
80 32 0.24
81 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (72 bp):
AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
TGAAAAC
Found at i:68753832 original size:54 final size:55
Alignment explanation
Indices: 68753732--68753837 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
68753722 GAACCGAGGC
* * *
68753732 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAACATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
68753786 TCAACCCACCTCTCGCAACATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAACATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
68753838 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAACATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:68753844 original size:13 final size:13
Alignment explanation
Indices: 68753817--68753850 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
68753807 GAGTTGATTC
*
68753817 TTGAACAACATAAA
1 TTGAA-AACAGAAA
68753831 TTGAAAACAGAAA
1 TTGAAAACAGAAA
68753844 TTGAAAA
1 TTGAAAA
68753851 TACCTCAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:68753898 original size:140 final size:140
Alignment explanation
Indices: 68753688--68754312 Score: 1105
Period size: 140 Copynumber: 4.5 Consensus size: 140
68753678 CAATTTTTTT
68753688 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
*
68753752 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAACATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
68753817 TTGAACAACATAAA
127 TTGAACAACGTAAA
*
68753831 TTGAAAACAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
68753896 CTGATTTTAAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
68753961 ACAACGTAAA
131 ACAACGTAAA
* *
68753971 TTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAC
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
68754036 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
68754101 ACAACGTAAA
131 ACAACGTAAA
68754111 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
68754176 CTG-TTTTGAAAAAGTAGAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
68754240 ACAACGTAAA
131 ACAACGTAAA
68754250 TTG-AAA-AGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
68754313 TTGAAATTAA
Statistics
Matches: 467, Mismatches: 14, Indels: 8
0.96 0.03 0.02
Matches are distributed among these distances:
137 57 0.12
138 3 0.01
139 75 0.16
140 303 0.65
142 23 0.05
143 6 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:68753972 original size:54 final size:54
Alignment explanation
Indices: 68753872--68753977 Score: 126
Period size: 54 Copynumber: 1.9 Consensus size: 54
68753862 GACCTGAGGC
*
68753872 TCAACTCACCTCTCGCAATATGAGCTGATTTTAAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTAAAAAAGTA-AAATTGAAAAGGT
* * * *
68753926 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TT-AAAAAAGTAAAATTGAAAA
68753978 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
54 32 0.73
55 6 0.14
56 6 0.14
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTAAAAAAGTAAAATTGAAAAGGT
Found at i:68754112 original size:54 final size:54
Alignment explanation
Indices: 68754012--68754117 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
68754002 GACCTGAGGC
*
68754012 TCAACTCACCTCTCGCAATATGACCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGACCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
** *
68754066 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGACCTGATT-TTGAA-AAAGTAAAATTGAAAA
68754118 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGACCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:68754379 original size:72 final size:72
Alignment explanation
Indices: 68754258--68754410 Score: 220
Period size: 72 Copynumber: 2.1 Consensus size: 72
68754248 AATTGAAAAG
* *
68754258 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-A
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGACTTGAAATTGA
68754322 AAACACAA
66 AAA-ACAA
* * * **
68754330 AAATTGAAAATACCTCAGTGTGCCCCGAGGCTCAACTCACCTCTGGCAATATGACTTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGACTTGAAATTGA
68754395 AAAACAA
66 AAAACAA
68754402 AAATT-AAAA
1 AAATTGAAAA
68754411 GGCTTAACTC
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 4 0.05
72 65 0.89
73 4 0.05
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (72 bp):
AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGACTTGAAATTGA
AAAACAA
Found at i:68754508 original size:119 final size:123
Alignment explanation
Indices: 68754285--68754527 Score: 345
Period size: 119 Copynumber: 2.0 Consensus size: 123
68754275 GCGTGACCTG
* *
68754285 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTGAAAATACCTCAGCG
*
68754350 TGCCCCGAGGCTCAACTCACCTCTGGCAATATGACTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTG-AAAAC-AAAATTAAA
* * * *
68754410 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-A-ATAAACT-AAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTGAAAATACCTCAGCG
* *
68754470 TG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTGAAAACAAAATTAAA
68754527 A
1 A
68754528 TACCTCAACG
Statistics
Matches: 109, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
117 10 0.09
118 5 0.05
119 38 0.35
120 15 0.14
121 5 0.05
122 1 0.01
123 7 0.06
124 1 0.01
125 27 0.25
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (123 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTGAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTGAAAACAAAATTAAA
Found at i:68754565 original size:69 final size:66
Alignment explanation
Indices: 68754410--68754579 Score: 200
Period size: 69 Copynumber: 2.5 Consensus size: 66
68754400 AAAAATTAAA
* * * *
68754410 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAAATAAACTAAAATACCTCAGCGTGCC
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTAAAAATAAACTAAAATACCTCAACGTGCC
68754474 CG
65 CG
*
68754476 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACA-AAATTAAAATACCTCAACGTG
1 AGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTT-AAAA-ATAAACTAAAATACCTCAACGTG
**
68754540 TCTTG
63 -CCCG
*
68754545 AGGCTCAACTCATCTATCGCAATATGAGTTGATTT
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTT
68754580 CCTTGAAAAG
Statistics
Matches: 90, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
65 1 0.01
66 25 0.28
67 5 0.06
68 23 0.26
69 35 0.39
70 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (66 bp):
AGGCTCAACTCACTCTCGCAATATGAGTTGATTTTAAAAATAAACTAAAATACCTCAACGTGCCC
G
Found at i:68762784 original size:12 final size:12
Alignment explanation
Indices: 68762764--68762799 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
68762754 TGGGTTATGC
*
68762764 AATGTATGAATG
1 AATGCATGAATG
68762776 AATGCATGAATG
1 AATGCATGAATG
68762788 AATGCATGAATG
1 AATGCATGAATG
68762800 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:68770162 original size:37 final size:37
Alignment explanation
Indices: 68770112--68770227 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
68770102 TTATTACGAA
* * * *
68770112 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
68770149 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
68770186 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
68770223 GTCTT
1 GTCTT
68770228 TAGAGCTCGG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:68770423 original size:47 final size:47
Alignment explanation
Indices: 68770345--68770649 Score: 493
Period size: 47 Copynumber: 6.4 Consensus size: 47
68770335 CCCTTCGGGA
* * * * * *
68770345 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68770392 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68770439 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68770486 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68770535 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68770582 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68770631 CTTATCACATATATACACT
1 CTTATCACATATATACACT
68770650 GTCTTGGCTG
Statistics
Matches: 242, Mismatches: 12, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 149 0.62
49 93 0.38
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68770547 original size:96 final size:96
Alignment explanation
Indices: 68770345--68770649 Score: 515
Period size: 96 Copynumber: 3.2 Consensus size: 96
68770335 CCCTTCGGGA
* * * * * * * *
68770345 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
68770408 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
68770439 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
68770504 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
68770535 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
68770600 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
68770631 CTTATCACATATATACACT
1 CTTATCACATATATACACT
68770650 GTCTTGGCTG
Statistics
Matches: 199, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
94 47 0.24
96 152 0.76
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68772481 original size:56 final size:55
Alignment explanation
Indices: 68772414--68772532 Score: 220
Period size: 56 Copynumber: 2.1 Consensus size: 55
68772404 TATTAGTTTA
68772414 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCAT-ACATGTT
*
68772470 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATACATGTT
68772525 TTGCCCAT
1 TTGCCCAT
68772533 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
55 15 0.24
56 47 0.76
ACGTcount: A:0.23, C:0.24, G:0.08, T:0.45
Consensus pattern (55 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATACATGTT
Found at i:68773756 original size:40 final size:40
Alignment explanation
Indices: 68773711--68773985 Score: 268
Period size: 40 Copynumber: 6.9 Consensus size: 40
68773701 CGAATACACG
* * *
68773711 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * ** *
68773751 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
68773791 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
68773831 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCAGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
68773871 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** * * *
68773911 GTAACTCGCACAAATGC-CTTCGGGACTTAACTCGGATTTA
1 -TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * **
68773951 GTAACTCGCACCAATGC-CTTCGGG-CTTAGCCCGGA
1 -TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
68773986 ATTAGTAACT
Statistics
Matches: 203, Mismatches: 31, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
39 9 0.04
40 182 0.90
41 12 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:68773932 original size:80 final size:79
Alignment explanation
Indices: 68773724--68774061 Score: 269
Period size: 80 Copynumber: 4.2 Consensus size: 79
68773714 CCAGCATGAT
* * * ***
68773724 TGCTCTTCGGGACCTAGCCCGG-ATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGAT
1 TGCTCTTCGGGACTTAGCCCGGTATATAAC-TC-GCACAAATGCTCTTCGGAACTTAGCACGGAT
68773788 ATATCACTAGCACGAA
64 ATATCACTAGCACGAA
* * * * ** * *
68773804 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTAGCCCAGATA
1 TGCTCTTCGGGACTTAGCCCGG-TATATAACTCGCACAAATGCTCTTCGGAACTTAGCACGGATA
* *
68773869 CATCACTAGCATGAA
65 TATCACTAGCACGAA
* * *
68773884 TGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC-CTTCGGGACTTAACTCGGAT
1 TGCTCTTCGGGACTTAGCCCGG-TATA-TAACTCGCACAAATGCTCTTCGGAACTTAGCACGGAT
* * * *
68773948 TTAGTAACTCGCACCAA
64 ATA-TCACTAGCACGAA
* * *
68773965 TGC-CTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGC-CTTCAGATCTTAGTC-CGGA
1 TGCTCTTCGGGACTTAGCCCGGTA-TA-TAACTCGCACAAATGCTCTTCGGAACTTAG-CACGGA
*
68774026 TATGGTCACTTAGCAC-AA
63 TAT-ATCAC-TAGCACGAA
*
68774044 AGC-CTTCGGGACTTAGCC
1 TGCTCTTCGGGACTTAGCC
68774062 TGGACATCAT
Statistics
Matches: 208, Mismatches: 41, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
78 1 0.00
79 58 0.28
80 120 0.58
81 24 0.12
82 5 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
TGCTCTTCGGGACTTAGCCCGGTATATAACTCGCACAAATGCTCTTCGGAACTTAGCACGGATAT
ATCACTAGCACGAA
Found at i:68774049 original size:79 final size:80
Alignment explanation
Indices: 68773888--68774061 Score: 205
Period size: 79 Copynumber: 2.2 Consensus size: 80
68773878 CATGAATGCT
* * *
68773888 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGATTTAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACTCGGATATAGT
* *
68773953 AACTCGCACCAATGC
66 AACTAGCACCAAAGC
*
68773968 CTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-AGATCTT-AGTCCGGATAT
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGAGA-CTTAACT-CGGATAT
* *
68774029 GGTCACTTAGCA-CAAAGC
63 AGTAAC-TAGCACCAAAGC
68774047 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
68774062 TGGACATCAT
Statistics
Matches: 81, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
78 5 0.06
79 58 0.72
80 18 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACTCGGATATAGT
AACTAGCACCAAAGC
Found at i:68774059 original size:40 final size:40
Alignment explanation
Indices: 68773728--68774061 Score: 238
Period size: 40 Copynumber: 8.4 Consensus size: 40
68773718 CATGATTGCT
* *
68773728 CTTCGGGACCTAGCCCGGATATA--ACAC-CAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTA-ACTC-GCACAAATGC
** * * * *
68773767 TCTTCGGGGTTTAGCACGGATATA-TCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * * **
68773807 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * * * **
68773847 TCTTCGGAACTTAGCCCAGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
*
68773887 TCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * *
68773928 CTTCGGGACTTAACTCGGATTTAGTAACTCGCACCAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
68773968 CTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
* * * * *
68774007 CTTC-AGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GC
1 CTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACAAATGC
68774047 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
68774062 TGGACATCAT
Statistics
Matches: 248, Mismatches: 37, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
38 1 0.00
39 31 0.12
40 193 0.78
41 23 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:68776264 original size:56 final size:56
Alignment explanation
Indices: 68776197--68776316 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
68776187 TATTAGTTTA
68776197 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
68776253 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
68776309 TTGCCCAT
1 TTGCCCAT
68776317 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:68782386 original size:17 final size:17
Alignment explanation
Indices: 68782364--68782417 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 17
68782354 TTTAGGATAA
68782364 ATTTTGATTGGTTTATG
1 ATTTTGATTGGTTTATG
68782381 ATTTTGA-T-G---A--
1 ATTTTGATTGGTTTATG
68782391 ATTTTGATTGGTTTATG
1 ATTTTGATTGGTTTATG
68782408 ATTTTGATTG
1 ATTTTGATTG
68782418 ATATATCTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 14
0.68 0.00 0.32
Matches are distributed among these distances:
10 7 0.23
11 1 0.03
12 2 0.07
15 2 0.07
16 1 0.03
17 17 0.57
ACGTcount: A:0.20, C:0.00, G:0.22, T:0.57
Consensus pattern (17 bp):
ATTTTGATTGGTTTATG
Found at i:68782393 original size:27 final size:27
Alignment explanation
Indices: 68782363--68782415 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
68782353 ATTTAGGATA
68782363 AATTTTGATTGGTTTATGATTTTGATG
1 AATTTTGATTGGTTTATGATTTTGATG
68782390 AATTTTGATTGGTTTATGATTTTGAT
1 AATTTTGATTGGTTTATGATTTTGAT
68782416 TGATATATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.21, T:0.57
Consensus pattern (27 bp):
AATTTTGATTGGTTTATGATTTTGATG
Found at i:68787031 original size:12 final size:12
Alignment explanation
Indices: 68787016--68787044 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
68787006 AAATAAACAG
68787016 AAAATTAAAATT
1 AAAATTAAAATT
68787028 AAAATTAAAATT
1 AAAATTAAAATT
68787040 AAAAT
1 AAAAT
68787045 AAAGATAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATTAAAATT
Found at i:68787053 original size:17 final size:16
Alignment explanation
Indices: 68786996--68787064 Score: 68
Period size: 17 Copynumber: 4.1 Consensus size: 16
68786986 AAAGGAGTTT
*
68786996 AATAAAATAAAAATAA
1 AATAAAATTAAAATAA
*
68787012 ACAGAAAATTAAAATTAA
1 A-ATAAAATTAAAA-TAA
68787030 AATTAAAATTAAAATAA
1 AA-TAAAATTAAAATAA
68787047 AGATAAAGA-TAAAATAA
1 A-ATAAA-ATTAAAATAA
68787064 A
1 A
68787065 TGAGATGGAC
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
16 1 0.02
17 28 0.62
18 16 0.36
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.22
Consensus pattern (16 bp):
AATAAAATTAAAATAA
Found at i:68788736 original size:3 final size:3
Alignment explanation
Indices: 68788728--68788770 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
68788718 TTACCAAACG
* *
68788728 AAT AAT AAT AAT AAT AAT AAC AA- AAT AAT AAT CAAT AGT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT A
68788771 TAGAAAATGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:68799084 original size:19 final size:19
Alignment explanation
Indices: 68799062--68799102 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
68799052 ATTAGTAAAC
68799062 AAAATGAAAAAGAAAAAAG
1 AAAATGAAAAAGAAAAAAG
*
68799081 AAAATGAAAAGGAAAAAAG
1 AAAATGAAAAAGAAAAAAG
68799100 AAA
1 AAA
68799103 TTTGTTAGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (19 bp):
AAAATGAAAAAGAAAAAAG
Found at i:68801201 original size:43 final size:43
Alignment explanation
Indices: 68801146--68801232 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
68801136 ATATCATACA
**
68801146 ATGCCAATGTCCCAGAC-GTGGTCTTACAT-GTAGCCACATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTAC-TCGTAAACACATATCG
*
68801189 ATGCCACTGTCCCAGACAGGGTCTTACTCGTAAACACATATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACTCGTAAACACATATCG
68801232 A
1 A
68801233 AAATAGAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 37 0.95
44 1 0.03
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACTCGTAAACACATATCG
Found at i:68810579 original size:26 final size:26
Alignment explanation
Indices: 68810541--68810624 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
68810531 CATGAAATTC
* *
68810541 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
68810567 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
68810593 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
68810619 TTATCA
1 TTATCA
68810625 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:68816253 original size:26 final size:26
Alignment explanation
Indices: 68816215--68816298 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
68816205 CATGAAATTC
* *
68816215 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
*
68816241 TTATCATGGAACATTTATCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
68816267 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
68816293 TTATCA
1 TTATCA
68816299 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.36
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:68822243 original size:11 final size:11
Alignment explanation
Indices: 68822215--68822268 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
68822205 TTGACCTTTC
68822215 CAAGGTATGGG
1 CAAGGTATGGG
*
68822226 -TAGGTATGGG
1 CAAGGTATGGG
*
68822236 AAAGGTATGGG
1 CAAGGTATGGG
68822247 CAAGGTATGGG
1 CAAGGTATGGG
*
68822258 CAAGGAATGGG
1 CAAGGTATGGG
68822269 TATATTCTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.30, C:0.06, G:0.46, T:0.19
Consensus pattern (11 bp):
CAAGGTATGGG
Found at i:68826359 original size:18 final size:18
Alignment explanation
Indices: 68826338--68826390 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
68826328 GAACAGTACT
68826338 GTATACGTAAATAGTGTC
1 GTATACGTAAATAGTGTC
*
68826356 GTATACGTAAATAGTGCC
1 GTATACGTAAATAGTGTC
* *
68826374 GTATACATGAATAGTGT
1 GTATACGTAAATAGTGT
68826391 TGCAAATGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (18 bp):
GTATACGTAAATAGTGTC
Found at i:68826378 original size:36 final size:36
Alignment explanation
Indices: 68826320--68826390 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 36
68826310 CCCAACTACT
* * *
68826320 GTATACGTGAACAGTACTGTATACGTAAATAGTGTC
1 GTATACGTAAACAGTACCGTATACATAAATAGTGTC
* * *
68826356 GTATACGTAAATAGTGCCGTATACATGAATAGTGT
1 GTATACGTAAACAGTACCGTATACATAAATAGTGT
68826391 TGCAAATGGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.31
Consensus pattern (36 bp):
GTATACGTAAACAGTACCGTATACATAAATAGTGTC
Found at i:68826955 original size:11 final size:11
Alignment explanation
Indices: 68826939--68826980 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
68826929 AGGTATGGTT
*
68826939 AGGTATGGGAA
1 AGGTATGGGCA
68826950 AGGTATGGGCA
1 AGGTATGGGCA
68826961 AGGTATGGGCA
1 AGGTATGGGCA
*
68826972 AGGAATGGG
1 AGGTATGGG
68826981 TATATTCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.31, C:0.05, G:0.48, T:0.17
Consensus pattern (11 bp):
AGGTATGGGCA
Found at i:68828084 original size:43 final size:43
Alignment explanation
Indices: 68828023--68828109 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
68828013 AGCGAGAAGA
68828023 AAGAGAAGAAGCAAGAGAATGGTTTGCTAAGAGAGACGAAATT
1 AAGAGAAGAAGCAAGAGAATGGTTTGCTAAGAGAGACGAAATT
68828066 AAGAGAAGAAGCAAGAGAATGGTTTGCTAAGAGAGACGAAATT
1 AAGAGAAGAAGCAAGAGAATGGTTTGCTAAGAGAGACGAAATT
68828109 A
1 A
68828110 CACATACTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.47, C:0.07, G:0.30, T:0.16
Consensus pattern (43 bp):
AAGAGAAGAAGCAAGAGAATGGTTTGCTAAGAGAGACGAAATT
Found at i:68828283 original size:23 final size:23
Alignment explanation
Indices: 68828237--68828283 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
68828227 GATAATGATA
* *
68828237 TTGAAATTTTAGTTTGTTAGATT
1 TTGAAATTTTAGTTTCTTAAATT
68828260 TTGAAATTATTA-TTTCTTAAATT
1 TTGAAATT-TTAGTTTCTTAAATT
68828283 T
1 T
68828284 GTTAAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TTGAAATTTTAGTTTCTTAAATT
Found at i:68828286 original size:32 final size:32
Alignment explanation
Indices: 68828249--68828330 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 32
68828239 GAAATTTTAG
*
68828249 TTTGTTAGATTTTGAAATTATTAT-TTCTTAAA
1 TTTGTTAGATATTGAAATTATTATGTT-TTAAA
* * *
68828281 TTTGTTAAATATTGAATTTATTATGTTTTAAG
1 TTTGTTAGATATTGAAATTATTATGTTTTAAA
* *
68828313 CTTGTTGGATATTGAAAT
1 TTTGTTAGATATTGAAAT
68828331 GATTGACAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
32 39 0.95
33 2 0.05
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.54
Consensus pattern (32 bp):
TTTGTTAGATATTGAAATTATTATGTTTTAAA
Found at i:68832885 original size:19 final size:18
Alignment explanation
Indices: 68832844--68832891 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
68832834 GTTTTATTTC
68832844 TTATATATTTTCATTGGTA
1 TTAT-TATTTTCATTGGTA
*
68832863 TTATGTATTTTCATTATGT-
1 TTAT-TATTTTCATT-GGTA
68832882 TTATTATTTT
1 TTATTATTTT
68832892 TTCCTTTGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 6 0.23
19 18 0.69
20 2 0.08
ACGTcount: A:0.23, C:0.04, G:0.08, T:0.65
Consensus pattern (18 bp):
TTATTATTTTCATTGGTA
Found at i:68837104 original size:11 final size:11
Alignment explanation
Indices: 68837070--68837119 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
68837060 AAAGGCATCC
68837070 AAAAAGAAAAA
1 AAAAAGAAAAA
* * *
68837081 CAAAAGTACAA
1 AAAAAGAAAAA
*
68837092 AAATAGAAAAA
1 AAAAAGAAAAA
68837103 AAAAAGAAAAA
1 AAAAAGAAAAA
*
68837114 GAAAAG
1 AAAAAG
68837120 CAATAAAACA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.80, C:0.04, G:0.12, T:0.04
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:68837660 original size:10 final size:10
Alignment explanation
Indices: 68837645--68837675 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
68837635 TTAAAAAATC
68837645 AAGAATAAAA
1 AAGAATAAAA
68837655 AAGAATAAAA
1 AAGAATAAAA
68837665 AA-AATAAAA
1 AAGAATAAAA
68837674 AA
1 AA
68837676 AAAGAATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.10
Consensus pattern (10 bp):
AAGAATAAAA
Found at i:68837670 original size:9 final size:9
Alignment explanation
Indices: 68837648--68837703 Score: 60
Period size: 9 Copynumber: 6.2 Consensus size: 9
68837638 AAAAATCAAG
68837648 AATAAAAAA
1 AATAAAAAA
68837657 GAATAAAAAA
1 -AATAAAAAA
68837667 AATAAAAAA
1 AATAAAAAA
* **
68837676 AA-AGAATC
1 AATAAAAAA
*
68837684 AATTAAAAA
1 AATAAAAAA
68837693 AATAAAAAA
1 AATAAAAAA
68837702 AA
1 AA
68837704 AGAAAGAAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
8 5 0.14
9 23 0.62
10 9 0.24
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.12
Consensus pattern (9 bp):
AATAAAAAA
Found at i:68838766 original size:15 final size:15
Alignment explanation
Indices: 68838745--68838775 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
68838735 GTTTTTTTTA
68838745 AAAAAAAGAGATCATT
1 AAAAAAA-AGATCATT
68838761 AAAAAAAAGATCATT
1 AAAAAAAAGATCATT
68838776 TTCATTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.65, C:0.06, G:0.10, T:0.19
Consensus pattern (15 bp):
AAAAAAAAGATCATT
Found at i:68839364 original size:177 final size:177
Alignment explanation
Indices: 68839133--68839899 Score: 979
Period size: 177 Copynumber: 4.3 Consensus size: 177
68839123 AAAGATGGCA
* * ** * * *
68839133 AATCTTATCTCCATGTATCGACAACAGAACAGATTTAAGCCATTGGCTTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGAATCGGCAATGGAGCAGATTTAAGCCACTGGCCTTATCTCTCTGAGGTAG
** * * *
68839198 CAAGAGAGCAGGTTGGCGATTGTAGTCTTATTTTCCTGAGGTAGCAAGAAAGCAGACTGAAAATT
66 CAAGAGAGCAGGTTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAGATT
*
68839263 -ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AGGATGGTG
131 GA-AGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGCA-GATGGTG
* * *
68839310 AATCTTATATCCATGAATCGGCAATGTAGCAGATTTAAGCCACTGGCCTTATCTCTTTGAGGTAG
1 AATCTTATCTCCATGAATCGGCAATGGAGCAGATTTAAGCCACTGGCCTTATCTCTCTGAGGTAG
* * * *
68839375 CAAGAGAGTAGGTTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGAAGACTGAGGATT
66 CAAGAGAGCAGGTTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAGATT
* ** *
68839440 GAAGATCTTATCTTCCTAGGCAGTAGCAGAGCAGATCGTAGATGGTG
131 GAAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGCAGATGGTG
* * * *
68839487 AATTTTATCTCCATGTATCGACAATGGAGAAGATTTAAGCCACTGGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGAATCGGCAATGGAGCAGATTTAAGCCACTGGCCTTATCTCTCTGAGGTAG
* * * * *
68839552 CAAGAGAGCAGGTTGAAAATGGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGTAGACTGAGGATT
66 CAAGAGAGCAGGTTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAGATT
* * *
68839617 GAATATCTTATCTCCCTAGGCAATAGTGGAGCAGATTGCAGATGGTG
131 GAAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGCAGATGGTG
* * ** * * *
68839664 AATCTTATCTACATGTATCGGCAATGGAGCAGATTTTTGCTA-TCAGCCTAATCTCTCTGAGGTA
1 AATCTTATCTCCATGAATCGGCAATGGAGCAGATTTAAGCCACT-GGCCTTATCTCTCTGAGGTA
* * * *
68839728 GCAAGAGAGCAGGTTGAAGA-AG-AGTCTTATCTTTCTGAGGTAGCAATAAAGCAGATTGAAGAT
65 GCAAGAGAGCAGGTTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAGAT
**
68839791 TGAAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGTGGATGGTG
130 TGAAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGCAGATGGTG
* * * *
68839839 AATCTTATCTCCAT-ATATCGGCATTGGAACAGATTTTAGCCACTAGCCTTATCTCTCTGAG
1 AATCTTATCTCCATGA-ATCGGCAATGGAGCAGATTTAAGCCACTGGCCTTATCTCTCTGAG
68839900 TTGTCGAGCA
Statistics
Matches: 514, Mismatches: 71, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
175 128 0.25
176 3 0.01
177 381 0.74
178 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (177 bp):
AATCTTATCTCCATGAATCGGCAATGGAGCAGATTTAAGCCACTGGCCTTATCTCTCTGAGGTAG
CAAGAGAGCAGGTTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAGATT
GAAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGCAGATGGTG
Found at i:68839921 original size:85 final size:85
Alignment explanation
Indices: 68839820--68839984 Score: 251
Period size: 85 Copynumber: 1.9 Consensus size: 85
68839810 GGCAGTAGTG
** ** * *
68839820 GAGCAGATCGTGGATGGTGAATCTTATCTCCATATATCGGCATTGGAA-CAGATTTTAGCCACTA
1 GAGCAGATCGAAGATGGCAAATCTTATCTCCATATATCGGCAAT-AAAGCAGATTTTAGCCACTA
68839884 GCCTTATCTCTCTGAGTTGTC
65 GCCTTATCTCTCTGAGTTGTC
*
68839905 GAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCAATAAAGCAGATTTTAGCCACTAG
1 GAGCAGATCGAAGATGGCAAATCTTATCTCCATATATCGGCAATAAAGCAGATTTTAGCCACTAG
68839970 CCTTATCTCTCTGAG
66 CCTTATCTCTCTGAG
68839985 GTAGCAAGAG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
84 2 0.03
85 70 0.97
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (85 bp):
GAGCAGATCGAAGATGGCAAATCTTATCTCCATATATCGGCAATAAAGCAGATTTTAGCCACTAG
CCTTATCTCTCTGAGTTGTC
Found at i:68840112 original size:262 final size:260
Alignment explanation
Indices: 68839645--68840160 Score: 730
Period size: 262 Copynumber: 2.0 Consensus size: 260
68839635 GGCAATAGTG
* * ** ** * *
68839645 GAGCAGATTGCAGATGGTGAATCTTATCTACATGTATCGGCAATGGAGCAGATTTTTGCTATCAG
1 GAGCAGATCGAAGATGGCAAATCTTATCTACATGTATCGGCAATAAAGCAGATTTTAGCCATCAG
* *
68839710 CCTAATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAAGAGTCTTATCTTTCTGAGGTAGCAAT
66 CCTAATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAAGAGTCTTATCTTCCTGAGGTAGCAAG
* * * * *
68839775 AAAGCAGATTGAAGATTGAAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGTGGATGGTGA
131 AAAGCAGACTGAAGATTGAAGATCTTATCGCCCTAAGCAGTAGTGGAGCAGATCGAGGATGGCGA
* *
68839840 ATCTTATCTCCATATA-TCGGCATTGGAACAGATTTTAGCCACTAGCCTTATCTCTCTGAGTTGT
196 ATCTTATCTCCATATACT-AGCAATGGAACAGATTTTAGCCACTAGCCTTATCTCTCTGAGTTGT
68839904 C
260 C
*
68839905 GAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCAATAAAGCAGATTTTAGCCA-CTA
1 GAGCAGATCGAAGATGGCAAATCTTATCTACATGTATCGGCAATAAAGCAGATTTTAGCCATC-A
* * * * *
68839969 GCCTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGATGATTGTAGTTTTATCTTCCTGAGGTAGC
65 GCCTAATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA-AG-AGTCTTATCTTCCTGAGGTAGC
* * *
68840034 AAGGAAGCAGACTGAAGATTGAAGATCTTATCGCCCTAAGTAGTTGTGGAGCAGATCGAGGATGG
128 AAGAAAGCAGACTGAAGATTGAAGATCTTATCGCCCTAAGCAGTAGTGGAGCAGATCGAGGATGG
* *
68840099 CGAATCTTATCTCCATGTACTAGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGA
193 CGAATCTTATCTCCATATACTAGCAATGGAACAGATTTTAGCCACTAGCCTTATCTCTCTGA
68840161 TGTAGCAAGA
Statistics
Matches: 224, Mismatches: 28, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
259 1 0.00
260 89 0.40
261 1 0.00
262 132 0.59
263 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (260 bp):
GAGCAGATCGAAGATGGCAAATCTTATCTACATGTATCGGCAATAAAGCAGATTTTAGCCATCAG
CCTAATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAAGAGTCTTATCTTCCTGAGGTAGCAAG
AAAGCAGACTGAAGATTGAAGATCTTATCGCCCTAAGCAGTAGTGGAGCAGATCGAGGATGGCGA
ATCTTATCTCCATATACTAGCAATGGAACAGATTTTAGCCACTAGCCTTATCTCTCTGAGTTGTC
Found at i:68840115 original size:177 final size:176
Alignment explanation
Indices: 68839898--68840273 Score: 558
Period size: 177 Copynumber: 2.1 Consensus size: 176
68839888 TATCTCTCTG
* * *
68839898 AGTTGTCGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTA-TCGGCAATAAAGCAGATTTTA
1 AGTTGTGGAGCAGATCGAGGATGGCAAATCTTATCTCCATGTACT-AGCAATAAAGCAGATTTTA
* * * *
68839962 GCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGATGATTGTAGTTTTATCTTCCT-
65 GCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGCTGACGATTGTAGTCTTATCTT-CTA
* *
68840026 GAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCGCCCTAAGT
129 GAGGTAGCAAAGAAGCAGACTGAAGATTGAAGATC-TATCGCCCTAAGC
* **
68840075 AGTTGTGGAGCAGATCGAGGATGGCGAATCTTATCTCCATGTACTAGCAATGGAGCAGATTTTAG
1 AGTTGTGGAGCAGATCGAGGATGGCAAATCTTATCTCCATGTACTAGCAATAAAGCAGATTTTAG
* *
68840140 CCACTAGCCTTATCTCTCTGATGTAGCAAGAGAGCAGGCTGGCGATTGTAGTCTTATCTTCTAGA
66 CCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGCTGACGATTGTAGTCTTATCTTCTAGA
**
68840205 GGTAGCAAAGAAGCAGACTGAAGATTGAAGATCTATTTCCCTAAGC
131 GGTAGCAAAGAAGCAGACTGAAGATTGAAGATCTATCGCCCTAAGC
*
68840251 AGTTGTGGAGCAGATTGAGGATG
1 AGTTGTGGAGCAGATCGAGGATG
68840274 ACGACCCTAA
Statistics
Matches: 180, Mismatches: 17, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
176 34 0.19
177 145 0.81
178 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (176 bp):
AGTTGTGGAGCAGATCGAGGATGGCAAATCTTATCTCCATGTACTAGCAATAAAGCAGATTTTAG
CCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGCTGACGATTGTAGTCTTATCTTCTAGA
GGTAGCAAAGAAGCAGACTGAAGATTGAAGATCTATCGCCCTAAGC
Found at i:68840231 original size:44 final size:44
Alignment explanation
Indices: 68840148--68840231 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 44
68840138 AGCCACTAGC
* * **
68840148 CTTATCTCTCTGATGTAGCAAGAGAGCAGGCTGGCGATTGTAGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGACTGAAGATTGTAGT
68840192 CTTATCT-TCTAGAGGTAGCAA-AGAAGCAGACTGAAGATTG
1 CTTATCTCTCT-GAGGTAGCAAGAG-AGCAGACTGAAGATTG
68840232 AAGATCTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
43 5 0.15
44 29 0.85
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (44 bp):
CTTATCTCTCTGAGGTAGCAAGAGAGCAGACTGAAGATTGTAGT
Done.