Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 209 of 343
Found at i:68843303 original size:19 final size:17
Alignment explanation
Indices: 68843281--68843412 Score: 58
Period size: 19 Copynumber: 7.4 Consensus size: 17
68843271 ATAATAAAAT
68843281 AATATATAATTTATAATAA
1 AATA-ATAA-TTATAATAA
**
68843300 AATAA-AA-TATAA-GG
1 AATAATAATTATAATAA
*
68843314 AATAAT-ATATATAGTAA
1 AATAATAAT-TATAATAA
68843331 AATATATAATGTATAATAA
1 AATA-ATAAT-TATAATAA
* * * *
68843350 AACTTATAAATAAAATGTAT
1 AA-TAATAATTATAA--TAA
*
68843370 AATAATAA-TATAATAT
1 AATAATAATTATAATAA
68843386 AATGAATAATGTATAATAAA
1 AAT-AATAAT-TATAAT-AA
68843406 AATAATA
1 AATAATA
68843413 TATATACTAT
Statistics
Matches: 86, Mismatches: 14, Indels: 26
0.68 0.11 0.21
Matches are distributed among these distances:
14 6 0.07
15 5 0.06
16 10 0.12
17 11 0.13
18 11 0.13
19 34 0.40
20 9 0.10
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (17 bp):
AATAATAATTATAATAA
Found at i:68843318 original size:22 final size:22
Alignment explanation
Indices: 68843269--68843320 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
68843259 CACCATTAAA
* *
68843269 GAATAATAAAATAATATATAAT
1 GAATAATAAAATAAAATATAAG
**
68843291 TTATAATAAAATAAAATATAAG
1 GAATAATAAAATAAAATATAAG
68843313 GAATAATA
1 GAATAATA
68843321 TATATAGTAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (22 bp):
GAATAATAAAATAAAATATAAG
Found at i:68843370 original size:13 final size:12
Alignment explanation
Indices: 68843338--68843395 Score: 50
Period size: 12 Copynumber: 4.8 Consensus size: 12
68843328 TAAAATATAT
68843338 AATGTATAATAA
1 AATGTATAATAA
68843350 AACT-TATAAATAA
1 AA-TGTAT-AATAA
68843363 AATGTATAATAA
1 AATGTATAATAA
*
68843375 TAA--TATAATAT
1 -AATGTATAATAA
*
68843386 AATGAATAAT
1 AATGTATAAT
68843396 GTATAATAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
10 2 0.05
11 7 0.18
12 16 0.42
13 13 0.34
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (12 bp):
AATGTATAATAA
Found at i:68843372 original size:25 final size:29
Alignment explanation
Indices: 68843336--68843414 Score: 98
Period size: 25 Copynumber: 2.9 Consensus size: 29
68843326 AGTAAAATAT
68843336 ATAATGTATAATAAAACT-T-ATA-AAT-A
1 ATAATGTATAATAAAA-TATAATATAATGA
68843362 A-AATGTATAATAATAATATAATATAATGA
1 ATAATGTATAATAA-AATATAATATAATGA
68843391 ATAATGTATAATAAAA-ATAATATA
1 ATAATGTATAATAAAATATAATATA
68843415 TATACTATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
25 13 0.28
26 4 0.09
27 3 0.06
28 11 0.23
29 4 0.09
30 12 0.26
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.34
Consensus pattern (29 bp):
ATAATGTATAATAAAATATAATATAATGA
Found at i:68846297 original size:17 final size:17
Alignment explanation
Indices: 68846275--68846307 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68846265 GTGGAGGTAA
*
68846275 AAGGATTTGATGATGAG
1 AAGGATTTGATAATGAG
68846292 AAGGATTTGATAATGA
1 AAGGATTTGATAATGA
68846308 CTTTCTGTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.30, T:0.30
Consensus pattern (17 bp):
AAGGATTTGATAATGAG
Found at i:68848411 original size:8 final size:8
Alignment explanation
Indices: 68848400--68848431 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
68848390 CTAGATCGGC
68848400 AAAAGCCG
1 AAAAGCCG
68848408 AAAAGCCG
1 AAAAGCCG
*
68848416 AAATGCCG
1 AAAAGCCG
68848424 AAAAGCCG
1 AAAAGCCG
68848432 GCATTTCGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:68848700 original size:27 final size:26
Alignment explanation
Indices: 68848669--68848719 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
68848659 AGACTGATAA
* *
68848669 AATTACTGAAATACCTCTATAAGGTAG
1 AATTACAGAAATACCCCTA-AAGGTAG
*
68848696 AATTACAGTAATACCCCTAAAGGT
1 AATTACAGAAATACCCCTAAAGGT
68848720 GTAAGTTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.24
27 16 0.76
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (26 bp):
AATTACAGAAATACCCCTAAAGGTAG
Found at i:68849214 original size:60 final size:62
Alignment explanation
Indices: 68849131--68849264 Score: 168
Period size: 60 Copynumber: 2.2 Consensus size: 62
68849121 TATCTCAACT
*
68849131 TGTAATAGGGCTACGGCCAAGATTGATACTGATATGAGCT-AGGCCCAG-TATACTCTGATAC
1 TGTAATAGGGCTACGGCCAAGATTAATACTGATATGAGCTAAGGCCCAGTTA-ACTCTGATAC
* * * * *
68849192 TGTAA-AGGGCTATGGCCCAGATTAATATTGATATGGGCTAAGGCCCAGTTAACTCTGATTTC
1 TGTAATAGGGCTACGGCCAAGATTAATACTGATATGAGCTAAGGCCCAGTTAACTCTGA-TAC
68849254 TG-AATAGGGCT
1 TGTAATAGGGCT
68849265 TAGACCCAGT
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
60 29 0.46
61 22 0.35
62 12 0.19
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (62 bp):
TGTAATAGGGCTACGGCCAAGATTAATACTGATATGAGCTAAGGCCCAGTTAACTCTGATAC
Found at i:68858457 original size:20 final size:20
Alignment explanation
Indices: 68858434--68858472 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
68858424 ATAATTTTAA
*
68858434 TAATTTTAAATTTTTAAAAG
1 TAATTTTAAAGTTTTAAAAG
*
68858454 TAATTTTTAAGTTTTAAAA
1 TAATTTTAAAGTTTTAAAA
68858473 AGTTAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
TAATTTTAAAGTTTTAAAAG
Found at i:68858463 original size:21 final size:22
Alignment explanation
Indices: 68858437--68858480 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
68858427 ATTTTAATAA
*
68858437 TTTTAAATTTTTAAAAG-TAAT
1 TTTTAAATTTTAAAAAGTTAAT
*
68858458 TTTTAAGTTTTAAAAAGTTAAT
1 TTTTAAATTTTAAAAAGTTAAT
68858480 T
1 T
68858481 AAATGCTTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (22 bp):
TTTTAAATTTTAAAAAGTTAAT
Found at i:68858468 original size:28 final size:27
Alignment explanation
Indices: 68858417--68858471 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
68858407 TTTTTTATTA
68858417 TTTTAAAATAATTTTAATAATTTTAAAT
1 TTTTAAAATAATTTT-ATAATTTTAAAT
68858445 TTTTAAAAGTAATTTT-TAAGTTTTAAA
1 TTTTAAAA-TAATTTTATAA-TTTTAAA
68858472 AAGTTAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 3 0.12
28 15 0.60
29 7 0.28
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (27 bp):
TTTTAAAATAATTTTATAATTTTAAAT
Found at i:68858752 original size:16 final size:16
Alignment explanation
Indices: 68858727--68858765 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
68858717 AAGAGAAGGG
68858727 AAAC-TTTTTAGTTAGA
1 AAACTTTTTTA-TTAGA
68858743 AAA-TTTTTTATTAGA
1 AAACTTTTTTATTAGA
68858758 AAACTTTT
1 AAACTTTT
68858766 ACTCATTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (16 bp):
AAACTTTTTTATTAGA
Found at i:68862543 original size:28 final size:28
Alignment explanation
Indices: 68862522--68862580 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
68862512 CAATTTCTTG
68862522 TTCTCGATTTTTTATTTTCAATTGTCAA
1 TTCTCGATTTTTTATTTTCAATTGTCAA
* * *
68862550 TTCTCGATTTTTTATTCTAAATTCTCAA
1 TTCTCGATTTTTTATTTTCAATTGTCAA
68862578 TTC
1 TTC
68862581 CAAATTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.22, C:0.17, G:0.05, T:0.56
Consensus pattern (28 bp):
TTCTCGATTTTTTATTTTCAATTGTCAA
Found at i:68864361 original size:11 final size:12
Alignment explanation
Indices: 68864345--68864377 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
68864335 GGACCCAAGA
68864345 TGAATTAATTT-
1 TGAATTAATTTG
*
68864356 TGAATTCATTTG
1 TGAATTAATTTG
68864368 TGAATTAATT
1 TGAATTAATT
68864378 CACTTGTGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (12 bp):
TGAATTAATTTG
Found at i:68865989 original size:44 final size:44
Alignment explanation
Indices: 68865916--68866014 Score: 153
Period size: 44 Copynumber: 2.2 Consensus size: 44
68865906 TTTAACATCT
*
68865916 ACACACTTAGTGCTTTAAAAATTAGCTGAAGCTATAATAATTTC
1 ACACACTTAGTACTTTAAAAATTAGCTGAAGCTATAATAATTTC
* * * *
68865960 GCACAATTAGTACTTTAAAGATTATCTGAAGCTATAATAATTTC
1 ACACACTTAGTACTTTAAAAATTAGCTGAAGCTATAATAATTTC
68866004 ACACACTTAGT
1 ACACACTTAGT
68866015 GTCATCTCAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.34
Consensus pattern (44 bp):
ACACACTTAGTACTTTAAAAATTAGCTGAAGCTATAATAATTTC
Found at i:68868270 original size:25 final size:25
Alignment explanation
Indices: 68868223--68868270 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
68868213 TTTATTTTAT
* *
68868223 TTTATTTAATATTAATATTAATATA
1 TTTATTTAATATTAAAATAAATATA
68868248 TTTATTTAATATTAAAATAAATA
1 TTTATTTAATATTAAAATAAATA
68868271 ATAATCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
TTTATTTAATATTAAAATAAATATA
Found at i:68869350 original size:25 final size:25
Alignment explanation
Indices: 68869316--68869365 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
68869306 TCTCTGCTAT
68869316 CTCCACACCCAGTTTATGAGATTGG
1 CTCCACACCCAGTTTATGAGATTGG
68869341 CTCCACACCCAGTTTATGAGATTGG
1 CTCCACACCCAGTTTATGAGATTGG
68869366 TTTTAACACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (25 bp):
CTCCACACCCAGTTTATGAGATTGG
Found at i:68872430 original size:50 final size:49
Alignment explanation
Indices: 68872176--68872495 Score: 179
Period size: 46 Copynumber: 6.8 Consensus size: 49
68872166 GTTATTGTGG
* * * *
68872176 GCTAGTGTAAGA-CATGTCTGGGACAT-GCACCGGCCA-C-ATTATTAGA
1 GCTAGTGTAAGACCACGTCTGGGACATGGCATCGG-CATCGATGATGAGA
* * * * * * * *
68872222 GCCAGTGTAAGACCATGTTTGGGACATGGCATCAGTATTGA-GACGAGT
1 GCTAGTGTAAGACCACGTCTGGGACATGGCATCGGCATCGATGATGAGA
* * * * * * * *
68872270 GCTAGTGTAAGA-CATGTTTGAGACAT-ACATCGGCCTCG-GGACGTA-T
1 GCTAGTGTAAGACCACGTCTGGGACATGGCATCGGCATCGATGATG-AGA
* * * * *
68872316 GCCAGTGTAAGA-CATGTCTGGGACAT-TCATCGGC-TACGA-AATGTG-
1 GCTAGTGTAAGACCACGTCTGGGACATGGCATCGGCAT-CGATGATGAGA
* * **
68872361 TC-AGTGTAAGACCATGTCTGGGACATGGTGTCGGCAT-GAAT-ATGTGAGA
1 GCTAGTGTAAGACCACGTCTGGGACATGGCATCGGCATCG-ATGA--TGAGA
* * *
68872410 GCTAGTGTAAGACCACGTCTGGGACATGGCATCGGCCTCGGTGATGATA
1 GCTAGTGTAAGACCACGTCTGGGACATGGCATCGGCATCGATGATGAGA
68872459 GCTAGTGTAAGACCACGTCTGGGACATGGCATCGGCA
1 GCTAGTGTAAGACCACGTCTGGGACATGGCATCGGCA
68872496 ACTTACCCTT
Statistics
Matches: 217, Mismatches: 37, Indels: 37
0.75 0.13 0.13
Matches are distributed among these distances:
44 9 0.04
45 17 0.08
46 64 0.29
47 29 0.13
48 22 0.10
49 42 0.19
50 32 0.15
51 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (49 bp):
GCTAGTGTAAGACCACGTCTGGGACATGGCATCGGCATCGATGATGAGA
Found at i:68877877 original size:46 final size:46
Alignment explanation
Indices: 68877731--68877904 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
68877721 GTTATTGTGG
* * * *
68877731 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCTTGA-GACGAGA
** *
68877777 GCTAGTGTAAGACCATGTCTGAGACATGGCATCGGTATTGAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGAGACAT-GCATCGGCCTTGAGACGAGA
* * *
68877825 GCTAGTGTAAGACATGTTTGAGACATGCATCGACCTTGGGACGTA-A
1 GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCTTGAGACG-AGA
*
68877871 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGAGACATGCATCGGC
68877905 TACGAAATGT
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
46 56 0.52
47 27 0.25
48 24 0.22
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCTTGAGACGAGA
Found at i:68879821 original size:20 final size:20
Alignment explanation
Indices: 68879796--68879837 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
68879786 ATAGGAGGTA
68879796 ATTTCGTTTTTAAATAAAAT
1 ATTTCGTTTTTAAATAAAAT
68879816 ATTTCGTTTTTAAATAAAAT
1 ATTTCGTTTTTAAATAAAAT
68879836 AT
1 AT
68879838 GATTTACTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (20 bp):
ATTTCGTTTTTAAATAAAAT
Found at i:68882560 original size:48 final size:49
Alignment explanation
Indices: 68882457--68882577 Score: 165
Period size: 48 Copynumber: 2.5 Consensus size: 49
68882447 TGTGTCACTA
* *
68882457 TAAGACCTGTCTGGGACATGGCATTGACACCGATAGACGAGAGCCAGTG
1 TAAGACCTGTCTGGGACATGGCATTGACACCGATAGACGAAAGCCAATG
* * *
68882506 TAAGACCTGTCTGGGACATGGCATTG-C-CTCGATATATGAAAGTCAATG
1 TAAGACCTGTCTGGGACATGGCATTGACAC-CGATAGACGAAAGCCAATG
*
68882554 TAAGACCTGTTTGGGACATGGCAT
1 TAAGACCTGTCTGGGACATGGCAT
68882578 CAACTTTAAC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
47 1 0.02
48 38 0.58
49 26 0.40
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
TAAGACCTGTCTGGGACATGGCATTGACACCGATAGACGAAAGCCAATG
Found at i:68905520 original size:7 final size:6
Alignment explanation
Indices: 68905494--68905569 Score: 57
Period size: 6 Copynumber: 12.5 Consensus size: 6
68905484 AATAAAGTTG
* * * *
68905494 AAATGA AAATAA AAATAA AAATCA AAAGAA AAATAA ATAAAATA AAAT-A
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA A-AATA-A AAATAA
* *
68905543 AAAT-A AAATAA TAATAA CAATTAA AAA
1 AAATAA AAATAA AAATAA -AAATAA AAA
68905570 AATAGGAGGA
Statistics
Matches: 55, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
5 10 0.18
6 34 0.62
7 9 0.16
8 2 0.04
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:68905533 original size:4 final size:5
Alignment explanation
Indices: 68905466--68905573 Score: 69
Period size: 5 Copynumber: 20.2 Consensus size: 5
68905456 TATGTCTTTC
* *
68905466 AAAAT AAAAT AATAA- AATAAT AAAGTT GAAAT GAAAAT AAAAAT AAAAAT
1 AAAAT AAAAT AA-AAT AA-AAT AAA-AT AAAAT -AAAAT -AAAAT -AAAAT
*
68905516 CAAAAG AAAA- ATAAAT AAAAT AAAAT AAAAT AAAAT AATAAT AACAAT
1 -AAAAT AAAAT A-AAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AA-AAT
*
68905564 TAAA- AAAAT A
1 AAAAT AAAAT A
68905574 GGAGGATTCA
Statistics
Matches: 85, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
4 4 0.05
5 45 0.53
6 36 0.42
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:68905567 original size:18 final size:16
Alignment explanation
Indices: 68905494--68905573 Score: 65
Period size: 18 Copynumber: 4.8 Consensus size: 16
68905484 AATAAAGTTG
*
68905494 AAATGAAAATAAAAATAA
1 AAAT-AAAATAATAAT-A
* *
68905512 AAATCAAAAGAAAAAT-
1 AAAT-AAAATAATAATA
68905528 AAATAAAATAA-AATA
1 AAATAAAATAATAATA
68905543 AAATAAAATAATAATA
1 AAATAAAATAATAATA
*
68905559 ACAATTAAAAAAATA
1 A-AA-TAAAATAATA
68905574 GGAGGATTCA
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
14 3 0.06
15 17 0.31
16 9 0.17
17 2 0.04
18 23 0.43
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (16 bp):
AAATAAAATAATAATA
Found at i:68907493 original size:55 final size:53
Alignment explanation
Indices: 68907379--68907578 Score: 194
Period size: 53 Copynumber: 3.8 Consensus size: 53
68907369 AGGGTTTAAG
* * * * *
68907379 GATACCGTGTAAGACCATGCCAAGGCATGGAAATTGGT---TTC-TAAGGCAAG
1 GATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAAGTTCATAAGGCAAA
* * *
68907429 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGCAAA
* * * * *
68907484 GGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAA-TTCATAAGGCAAT
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGT-AAGTTCATAAGGCAAA
* *
68907537 GATACCATATAAGACCATGTCAAGACATGGCAGTGGTAAGTT
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
68907579 TCAAAAGGAT
Statistics
Matches: 120, Mismatches: 22, Indels: 13
0.77 0.14 0.08
Matches are distributed among these distances:
49 5 0.04
50 25 0.21
52 4 0.03
53 43 0.36
54 1 0.01
55 40 0.33
56 2 0.02
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGCAAA
Found at i:68907577 original size:108 final size:105
Alignment explanation
Indices: 68907386--68907578 Score: 280
Period size: 108 Copynumber: 1.8 Consensus size: 105
68907376 AAGGATACCG
* *
68907386 TGTAAGACCATGCCAAGGCATGGAAATTGGTTTCTAAGGCAAGGAAATCATGTAAGACCATGTCA
1 TGTAAGACCATGCCAAGGCATGGAAATTGGTTTCTAAGGCAAGGAAACCATATAAGACCATGTCA
*
68907451 AGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 AGACATGGCAGTGATAAGTTACTATAAGGCAAAGGTCCCA
* * *
68907491 TGTAAGACCATGCCAAGGCATGG-CATTGGTGAATTCATAAGGCAATGATACCATATAAGACCAT
1 TGTAAGACCATGCCAAGGCATGGAAATTGGT---TTC-TAAGGCAAGGAAACCATATAAGACCAT
*
68907555 GTCAAGACATGGCAGTGGTAAGTT
62 GTCAAGACATGGCAGTGATAAGTT
68907579 TCAAAAGGAT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
104 6 0.08
105 23 0.30
107 3 0.04
108 45 0.58
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (105 bp):
TGTAAGACCATGCCAAGGCATGGAAATTGGTTTCTAAGGCAAGGAAACCATATAAGACCATGTCA
AGACATGGCAGTGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:68907843 original size:16 final size:16
Alignment explanation
Indices: 68907822--68907852 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68907812 ATAAATTTGA
68907822 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
68907838 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
68907853 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:68915031 original size:55 final size:54
Alignment explanation
Indices: 68914944--68915194 Score: 233
Period size: 55 Copynumber: 4.8 Consensus size: 54
68914934 ATTAGGGTTT
* *
68914944 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
68914999 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
68915054 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
68915107 AAGGATACCA--TAA-ACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
68915153 AAGGATACCACGTAAGACCATG-AAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
68915195 GTACCCGCGT
Statistics
Matches: 165, Mismatches: 21, Indels: 27
0.77 0.10 0.13
Matches are distributed among these distances:
46 10 0.06
48 21 0.13
49 8 0.05
50 22 0.13
51 7 0.04
52 5 0.03
53 13 0.08
54 8 0.05
55 67 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:68915147 original size:105 final size:109
Alignment explanation
Indices: 68914954--68915148 Score: 292
Period size: 105 Copynumber: 1.8 Consensus size: 109
68914944 AAGGATACCG
*
68914954 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCA-GTAAGACCA
*
68915019 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
65 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* *
68915064 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCA-TAA-ACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCAGTAAGACCA
*
68915124 TGTCAAGACATGGCAATGGTAAGTT
65 TGTCAAGACATGGCAATGATAAGTT
68915149 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
105 27 0.34
106 3 0.04
107 3 0.04
108 15 0.19
109 7 0.09
110 24 0.30
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (109 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCAGTAAGACCAT
GTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:68915406 original size:16 final size:16
Alignment explanation
Indices: 68915385--68915415 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68915375 ATAAATTTGA
68915385 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
68915401 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
68915416 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:68916706 original size:12 final size:12
Alignment explanation
Indices: 68916689--68916722 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
68916679 CAGTCGTGTA
68916689 CTACCACACGGC
1 CTACCACACGGC
*
68916701 CTACCACACGGG
1 CTACCACACGGC
*
68916713 CGACCACACG
1 CTACCACACG
68916723 CCCGTGTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.47, G:0.21, T:0.06
Consensus pattern (12 bp):
CTACCACACGGC
Found at i:68923096 original size:16 final size:17
Alignment explanation
Indices: 68923075--68923106 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
68923065 ATAAATTTGA
68923075 TTAAGTAAGT-AAGTAT
1 TTAAGTAAGTGAAGTAT
68923091 TTAAGTAAGTGAAGTA
1 TTAAGTAAGTGAAGTA
68923107 AGTGAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.34
Consensus pattern (17 bp):
TTAAGTAAGTGAAGTAT
Found at i:68930455 original size:53 final size:53
Alignment explanation
Indices: 68930272--68930526 Score: 195
Period size: 55 Copynumber: 4.8 Consensus size: 53
68930262 ATTAGGGTTT
* * *
68930272 AAGGATACCGTGTGAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGC-ATTGGTAA-G-TTCATAAGGC
* * * * * *
68930327 AAGGAAATCATGTAAGACCATGTCAAGACGTGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT-C-ATAAGGC
*
68930382 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAA-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGT-AAGTTCATAAGGC
* * * *
68930435 AAGGATACCATATAAGACCATGTC-AGGACATGGCAATGGTAAATT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGG-CATGGCATTGGTAAGTTCAT-AAGGC
* ** * *
68930484 AAGGATACCACGTAAGACCATGAAAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAG
68930527 GTACCCGCGT
Statistics
Matches: 164, Mismatches: 26, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
49 34 0.21
50 2 0.01
51 1 0.01
52 13 0.08
53 38 0.23
54 8 0.05
55 62 0.38
56 6 0.04
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGC
Found at i:68930739 original size:16 final size:16
Alignment explanation
Indices: 68930718--68930748 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68930708 ATAAATTTGA
68930718 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
68930734 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
68930749 AGTGAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:68932049 original size:12 final size:12
Alignment explanation
Indices: 68932032--68932065 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
68932022 CAGTCGTGTA
68932032 CTACCACACGGC
1 CTACCACACGGC
*
68932044 CTACCACACGGG
1 CTACCACACGGC
*
68932056 CGACCACACG
1 CTACCACACG
68932066 CCCGTGTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.47, G:0.21, T:0.06
Consensus pattern (12 bp):
CTACCACACGGC
Found at i:68936276 original size:3 final size:3
Alignment explanation
Indices: 68936270--68936376 Score: 83
Period size: 3 Copynumber: 35.7 Consensus size: 3
68936260 AAGGGAAAAT
* ** * * * *
68936270 ATA ATA ATA GTA ACG ATA ATA AGA ATA ATA ACA ATA ATA ATA GTA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
68936318 AAA ATA AAA ATA ATTA A-A A-A AGTA ATA ATA ATA ATA ATA ACA ATA
1 ATA ATA ATA ATA A-TA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA
*
68936363 GTA ATA ATA ATA AT
1 ATA ATA ATA ATA AT
68936377 GTTAAATAAT
Statistics
Matches: 80, Mismatches: 21, Indels: 6
0.75 0.20 0.06
Matches are distributed among these distances:
2 4 0.05
3 71 0.89
4 5 0.06
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:68936375 original size:18 final size:18
Alignment explanation
Indices: 68936270--68936375 Score: 95
Period size: 18 Copynumber: 5.7 Consensus size: 18
68936260 AAGGGAAAAT
* *
68936270 ATAATAATAGTAACGATA
1 ATAATAATAATAACAATA
*
68936288 ATAAGAATAATAACAATA
1 ATAATAATAATAACAATA
* * *
68936306 ATAATAGTAACAAAAATA
1 ATAATAATAATAACAATA
* * *
68936324 AAAATAATTAAAAAAGTAATA
1 ATAATAA-T-AATAA-CAATA
68936345 ATAATAATAATAACAATA
1 ATAATAATAATAACAATA
*
68936363 GTAATAATAATAA
1 ATAATAATAATAA
68936376 TGTTAAATAA
Statistics
Matches: 70, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
18 50 0.71
19 5 0.07
20 5 0.07
21 10 0.14
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (18 bp):
ATAATAATAATAACAATA
Found at i:68937539 original size:26 final size:26
Alignment explanation
Indices: 68937509--68937559 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
68937499 TTTGGGCCCT
*
68937509 TTTGGGCTTAGGGTTTAGTTGGGTTG
1 TTTGGGCTTAGGGTTTAGTTAGGTTG
* *
68937535 TTTGGGGTTTGGGTTTAGTTAGGTT
1 TTTGGGCTTAGGGTTTAGTTAGGTT
68937560 TTGGGTTGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.08, C:0.02, G:0.41, T:0.49
Consensus pattern (26 bp):
TTTGGGCTTAGGGTTTAGTTAGGTTG
Found at i:68938235 original size:143 final size:143
Alignment explanation
Indices: 68937970--68938677 Score: 830
Period size: 143 Copynumber: 5.0 Consensus size: 143
68937960 GATAGGATTA
* * * * * *** *
68937970 GTAGCTTCAATCTGCTCCACTGCGATTTCAGGGAGATGTGATTTGCTGCCTTCAGTCTGCTCCGC
1 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAAAAAGATTTGCTGTCTTCAGTCTGCTCCGC
* * * * * *
68938035 TGTAACTTTAGGGAGATGAGGCTGGCGGCTTCAATCTACTCCACTGCAGCTTCAGGAAGATAAGA
66 TGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGA
*
68938100 TTCACCATAATTT
131 TCCACCATAATTT
* * * *
68938113 ATAGCTTTAATATGTTCCACTGCAA-TGTCAGGGAAAAAAAATTTGCTTTCTTCAGTCTGCTCCG
1 GTAGCTTTAATCTGTTCCACTGCAACT-TCAGGGAAAAAAGATTTGCTGTCTTCAGTCTGCTCCG
* * *
68938177 CTGCAACTTCATGGAGATAAGGCTGGTGGCTTTAATCTGCTCCACTGCAACTTTAGGAAGATAAG
65 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG
68938242 ATCCACCATAATTT
130 ATCCACCATAATTT
* * * * * * *
68938256 GTAGATTTAATCTGTTCTATTGTAACTTCAGGGAAATAAGATTAGATGTCTTCAGTCTGCTCCGC
1 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAAAAAGATTTGCTGTCTTCAGTCTGCTCCGC
* * * *
68938321 TGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAGTCTGTTCCACTGCAACTTCAGAAAGATAAGA
66 TGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGA
68938386 TCCACCATAATTT
131 TCCACCATAATTT
* * * * ** * * *
68938399 GTAGCTTTAATCTGTTCCACTGCGATTTTAGGGAAATAAGATTCACTGTCTTCAGTTTGTTTCGC
1 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAAAAAGATTTGCTGTCTTCAGTCTGCTCCGC
* * *
68938464 TGCAACTTCAGGGAGATAAGGCTAGTGGCTTCAATTTGCTCCACTGCAACTTCAAGAAGATAAGA
66 TGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGA
*
68938529 TCCGCCATAATTT
131 TCCACCATAATTT
* * *
68938542 GTACCTTCAATCTGTTCCACTGCAACTTCA-GGAAAATAAGATTTGGC-GTCTTC-GATCTACTC
1 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAAA-AAGATTT-GCTGTCTTCAG-TCTGCTC
* * * * * * * *
68938604 CACTGCAACTTTAGGGAGATAAGACTAGTTGCTTCAATATGCTCCACTGCAACTTCAAGAAGACA
63 CGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
68938669 AGATCCACC
128 AGATCCACC
68938678 GTCTTCGATC
Statistics
Matches: 480, Mismatches: 80, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
142 7 0.01
143 471 0.98
144 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (143 bp):
GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAAAAAGATTTGCTGTCTTCAGTCTGCTCCGC
TGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGA
TCCACCATAATTT
Found at i:68938327 original size:45 final size:44
Alignment explanation
Indices: 68938276--68938375 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 44
68938266 TCTGTTCTAT
* * *
68938276 TGTAACTTCAGGGAAATAAGATTAGATGTCTTCAGTCTGCTCCGC
1 TGTAACTTCAGGGAAATAAGACT-GATGGCTTCAGTCTGCTCCAC
* * * *
68938321 TGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAGTCTGTTCCAC
1 TGTAACTTCAGGGAAATAAGACTGATGGCTTCAGTCTGCTCCAC
*
68938365 TGCAACTTCAG
1 TGTAACTTCAG
68938376 AAAGATAAGA
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 27 0.57
45 20 0.43
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (44 bp):
TGTAACTTCAGGGAAATAAGACTGATGGCTTCAGTCTGCTCCAC
Found at i:68938511 original size:44 final size:44
Alignment explanation
Indices: 68938463--68938671 Score: 141
Period size: 44 Copynumber: 4.5 Consensus size: 44
68938453 GTTTGTTTCG
* * *
68938463 CTGCAACTTCAGGGAGATAAGGCTAGTGGCTTCAATTTGCTCCA
1 CTGCAACTTCAGGAAGATAAGACTAGTGGCTTCAATCTGCTCCA
* ** *
68938507 CTGCAACTTCAAGAAGATAAGATCCGCCATAATTTGTACCTTCAATCTGTTCCA
1 CTGCAACTTCAGGAAGATAAGA-----C-T-A---GTGGCTTCAATCTGCTCCA
* * * * *
68938561 CTGCAACTTCAGGAAAATAAGATTTG-GCGTCTTCGATCTACTCCA
1 CTGCAACTTCAGGAAGATAAGACTAGTG-G-CTTCAATCTGCTCCA
* * * *
68938606 CTGCAACTTTAGGGAGATAAGACTAGTTGCTTCAATATGCTCCA
1 CTGCAACTTCAGGAAGATAAGACTAGTGGCTTCAATCTGCTCCA
* *
68938650 CTGCAACTTCAAGAAGACAAGA
1 CTGCAACTTCAGGAAGATAAGA
68938672 TCCACCGTCT
Statistics
Matches: 123, Mismatches: 29, Indels: 26
0.69 0.16 0.15
Matches are distributed among these distances:
44 50 0.41
45 34 0.28
48 1 0.01
49 1 0.01
50 1 0.01
51 1 0.01
54 35 0.28
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (44 bp):
CTGCAACTTCAGGAAGATAAGACTAGTGGCTTCAATCTGCTCCA
Found at i:68938608 original size:45 final size:45
Alignment explanation
Indices: 68938557--68938705 Score: 131
Period size: 45 Copynumber: 3.3 Consensus size: 45
68938547 TTCAATCTGT
* * *
68938557 TCCACTGCAACTTCAGGAAAATAAGATTTGGCGTCTTCGATCTAC
1 TCCACTGCAACTTCAGGAAGATAAGATTAGCCGTCTTCGATCTAC
* * * ** * * *
68938602 TCCACTGCAACTTTAGGGAGATAAGACTAGTTG-CTTCAATATGC
1 TCCACTGCAACTTCAGGAAGATAAGATTAGCCGTCTTCGATCTAC
* * *
68938646 TCCACTGCAACTTCAAGAAGACAAGATCCA-CCGTCTTCGATCTAC
1 TCCACTGCAACTTCAGGAAGATAAGAT-TAGCCGTCTTCGATCTAC
* *
68938691 TCCATTGGAACTTCA
1 TCCACTGCAACTTCA
68938706 AAGAGATAAG
Statistics
Matches: 79, Mismatches: 23, Indels: 4
0.75 0.22 0.04
Matches are distributed among these distances:
44 31 0.39
45 48 0.61
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGAAGATAAGATTAGCCGTCTTCGATCTAC
Found at i:68938712 original size:89 final size:89
Alignment explanation
Indices: 68938546--68938716 Score: 216
Period size: 89 Copynumber: 1.9 Consensus size: 89
68938536 TAATTTGTAC
* * * * ****
68938546 CTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGGCGTCTTCGATCTACTCCACTGCA
1 CTTCAATATGCTCCACTGCAACTTCAAGAAAACAAGATCCACCGTCTTCGATCTACTCCACTGCA
* **
68938611 ACTTTAGGGAGATAAGACTAGTTG
66 ACTTCAAAGAGATAAGACTAGTTG
* * *
68938635 CTTCAATATGCTCCACTGCAACTTCAAGAAGACAAGATCCACCGTCTTCGATCTACTCCATTGGA
1 CTTCAATATGCTCCACTGCAACTTCAAGAAAACAAGATCCACCGTCTTCGATCTACTCCACTGCA
68938700 ACTTCAAAGAGATAAGA
66 ACTTCAAAGAGATAAGA
68938717 TCTACAACTT
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
89 68 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (89 bp):
CTTCAATATGCTCCACTGCAACTTCAAGAAAACAAGATCCACCGTCTTCGATCTACTCCACTGCA
ACTTCAAAGAGATAAGACTAGTTG
Found at i:68938728 original size:89 final size:89
Alignment explanation
Indices: 68938546--68938749 Score: 212
Period size: 89 Copynumber: 2.3 Consensus size: 89
68938536 TAATTTGTAC
* * * * ****
68938546 CTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATTTGGCGTCTTCGATCTACTCCACTGCA
1 CTTCAATATGCTCCACTGCAACTTCAAGAAAACAAGATCCACCGTCTTCGATCTACTCCACTGCA
* ** ***
68938611 ACTTTAGGGAGATAAGACTAGTTG
66 ACTTCAAAGAGATAAGACTAGCAA
* * *
68938635 CTTCAATATGCTCCACTGCAACTTCAAGAAGACAAGATCCACCGTCTTCGATCTACTCCATTGGA
1 CTTCAATATGCTCCACTGCAACTTCAAGAAAACAAGATCCACCGTCTTCGATCTACTCCACTGCA
68938700 ACTTCAAAGAGATAAGATCTA-CAA
66 ACTTCAAAGAGATAAGA-CTAGCAA
* * *
68938724 CTTCAATTTGCTCTACTGCTACTTCA
1 CTTCAATATGCTCCACTGCAACTTCA
68938750 GGGAGATGAG
Statistics
Matches: 94, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
89 91 0.97
90 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (89 bp):
CTTCAATATGCTCCACTGCAACTTCAAGAAAACAAGATCCACCGTCTTCGATCTACTCCACTGCA
ACTTCAAAGAGATAAGACTAGCAA
Found at i:68939836 original size:19 final size:18
Alignment explanation
Indices: 68939816--68939879 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 18
68939806 CCTTGGCCTC
68939816 TTCTTTTTCTTTTCTTTT
1 TTCTTTTTCTTTTCTTTT
* *
68939834 CTTTTTTTTGTTTTTCTTTT
1 -TTCTTTTT-CTTTTCTTTT
*
68939854 TTC-TTTTCTATTCTTTT
1 TTCTTTTTCTTTTCTTTT
68939871 TTCTCTTTT
1 TTCT-TTTT
68939880 TTGTTTTACC
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
17 11 0.30
18 4 0.11
19 13 0.35
20 9 0.24
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.81
Consensus pattern (18 bp):
TTCTTTTTCTTTTCTTTT
Found at i:68939848 original size:15 final size:15
Alignment explanation
Indices: 68939816--68939872 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 15
68939806 CCTTGGCCTC
68939816 TTCTTTTTCTTTTCTT
1 TTCTTTTT-TTTTCTT
68939832 TTCTTTTTTTTGT-TT
1 TTCTTTTTTTT-TCTT
*
68939847 TTCTTTTTTCTTTTCTA
1 TTC-TTTTT-TTTTCTT
68939864 TTCTTTTTT
1 TTCTTTTTT
68939873 CTCTTTTTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
15 9 0.25
16 20 0.56
17 7 0.19
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (15 bp):
TTCTTTTTTTTTCTT
Found at i:68939867 original size:17 final size:16
Alignment explanation
Indices: 68939819--68939874 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 16
68939809 TGGCCTCTTC
68939819 TTTTTCTTTTCTTTTCT
1 TTTTTCTTTTC-TTTCT
68939836 TTTTT-TTGTT-TTTCT
1 TTTTTCTT-TTCTTTCT
68939851 TTTTTCTTTTCTATTCT
1 TTTTTCTTTTCT-TTCT
68939868 TTTTTCT
1 TTTTTCT
68939875 CTTTTTTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.34
16 5 0.14
17 18 0.51
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (16 bp):
TTTTTCTTTTCTTTCT
Found at i:68939880 original size:32 final size:32
Alignment explanation
Indices: 68939819--68939880 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
68939809 TGGCCTCTTC
* * *
68939819 TTTTTCTTTTCTTTTCTTTTTTTTGTTTTTCT
1 TTTTTCTTTTCTATTCTTTTTTCTCTTTTTCT
68939851 TTTTTCTTTTCTATTCTTTTTTCTCTTTTT
1 TTTTTCTTTTCTATTCTTTTTTCTCTTTTT
68939881 TGTTTTACCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.82
Consensus pattern (32 bp):
TTTTTCTTTTCTATTCTTTTTTCTCTTTTTCT
Found at i:68939892 original size:14 final size:12
Alignment explanation
Indices: 68939837--68939909 Score: 51
Period size: 13 Copynumber: 5.6 Consensus size: 12
68939827 TTCTTTTCTT
*
68939837 TTTTTTGTTTTTC
1 TTTTTT-TTTTAC
68939850 TTTTTTCTTTT-C
1 TTTTTT-TTTTAC
68939862 TATTCTTTTTTCT-C
1 T-TT-TTTTTT-TAC
68939876 TTTTTTGTTTTACC
1 TTTTTT-TTTTA-C
68939890 TTTTTCTTTTTAC
1 TTTTT-TTTTTAC
68939903 TTTTTTT
1 TTTTTTT
68939910 AAGTGAAGTA
Statistics
Matches: 52, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
12 8 0.15
13 26 0.50
14 17 0.33
15 1 0.02
ACGTcount: A:0.04, C:0.14, G:0.03, T:0.79
Consensus pattern (12 bp):
TTTTTTTTTTAC
Found at i:68939899 original size:5 final size:5
Alignment explanation
Indices: 68939820--68939879 Score: 56
Period size: 5 Copynumber: 12.8 Consensus size: 5
68939810 GGCCTCTTCT
* * *
68939820 TTTTC TTTTC TTTTC TTTT- TTTTG TTTT- TCTT- TTTTC TTTTC TATTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
*
68939867 TTTT- TTCTC TTTT
1 TTTTC TTTTC TTTT
68939880 TTGTTTTACC
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
4 13 0.28
5 33 0.72
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:68944230 original size:18 final size:18
Alignment explanation
Indices: 68944207--68944244 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
68944197 GATTAATTAA
68944207 TGTCATAATGTCAAAAAT
1 TGTCATAATGTCAAAAAT
68944225 TGTCATAATGTCAAAAAT
1 TGTCATAATGTCAAAAAT
68944243 TG
1 TG
68944245 ACAGATTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (18 bp):
TGTCATAATGTCAAAAAT
Found at i:68946379 original size:26 final size:24
Alignment explanation
Indices: 68946348--68946406 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 24
68946338 TTTTGGGCCC
*
68946348 TTTTGGGCTTAGGGTTTAGTTAGGT
1 TTTTGGGCTTAGGGTTTAGTT-GGG
* *
68946373 TGTTTGGGGTTTGGGTTTAGTTGGG
1 T-TTTGGGCTTAGGGTTTAGTTGGG
68946398 TTTTGGGCT
1 TTTTGGGCT
68946407 GTTGTTTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 7 0.24
25 4 0.14
26 18 0.62
ACGTcount: A:0.07, C:0.03, G:0.41, T:0.49
Consensus pattern (24 bp):
TTTTGGGCTTAGGGTTTAGTTGGG
Found at i:68947506 original size:12 final size:12
Alignment explanation
Indices: 68947489--68947529 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
68947479 TCCATTTTTA
68947489 TTTTATTTTACT
1 TTTTATTTTACT
**
68947501 TTTTATTTTGTT
1 TTTTATTTTACT
*
68947513 TTTTAGTTTACT
1 TTTTATTTTACT
68947525 TTTTA
1 TTTTA
68947530 CATTCTAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.76
Consensus pattern (12 bp):
TTTTATTTTACT
Found at i:68954712 original size:24 final size:24
Alignment explanation
Indices: 68954680--68954727 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
68954670 TGCTGACTTA
68954680 GGTACAATTCACTTATTTTTCTAT
1 GGTACAATTCACTTATTTTTCTAT
68954704 GGTACAATTCACTTATTTTTCTAT
1 GGTACAATTCACTTATTTTTCTAT
68954728 CTCTGAGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.08, T:0.50
Consensus pattern (24 bp):
GGTACAATTCACTTATTTTTCTAT
Found at i:68969624 original size:49 final size:48
Alignment explanation
Indices: 68969569--68969685 Score: 128
Period size: 49 Copynumber: 2.4 Consensus size: 48
68969559 GGGCCACAGG
* *
68969569 GCCATGTGAAATCATACAGATTGTGTGGGTAGACCATATGGAC-CATGCA
1 GCCATGTGAAATCATACAGATAGCGTGGGTAGACCATATGGACACAT--A
* * * * * *
68969618 GCCATGTAAAATCATGCAAATAGCGTGGTTAGACCGTGTGGACACATA
1 GCCATGTGAAATCATACAGATAGCGTGGGTAGACCATATGGACACATA
*
68969666 ACCATGTGAAATCATACAGA
1 GCCATGTGAAATCATACAGA
68969686 CTGTCCAGGT
Statistics
Matches: 55, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
48 17 0.31
49 35 0.64
50 3 0.05
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (48 bp):
GCCATGTGAAATCATACAGATAGCGTGGGTAGACCATATGGACACATA
Found at i:68970401 original size:22 final size:22
Alignment explanation
Indices: 68970374--68970418 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
68970364 ATGGGATATG
* *
68970374 ATATGATTTGGTATGATCTGAT
1 ATATGATTTGCTATGATATGAT
68970396 ATATGATTTGCTATGATATGAT
1 ATATGATTTGCTATGATATGAT
68970418 A
1 A
68970419 AGATATGCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.44
Consensus pattern (22 bp):
ATATGATTTGCTATGATATGAT
Found at i:68976407 original size:47 final size:46
Alignment explanation
Indices: 68976351--68976527 Score: 214
Period size: 47 Copynumber: 3.8 Consensus size: 46
68976341 ACAACTCTTA
* *
68976351 GCCGATGCATGTCCCAGACACGTCTTACATTGGCTA-TCATCGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCGAG
* * *
68976398 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACCCATCTCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG
* *
68976444 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CTCGAG
* *
68976492 GCCAATGCATGTCCCAGACATGCCTTACACTGGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
68976528 ACAAGAAATC
Statistics
Matches: 114, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
46 25 0.22
47 64 0.56
48 24 0.21
49 1 0.01
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.24
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG
Found at i:68976501 original size:94 final size:93
Alignment explanation
Indices: 68976216--68976527 Score: 269
Period size: 94 Copynumber: 3.3 Consensus size: 93
68976206 TTGCTGATGC
* * * *
68976216 CATGTCCCAGACATGGTCTTACATTGGCTATCC-TCATCAAGGCCGATGCCATGTCCTAGACATG
1 CATGTCCCAGACAT-GTCTTACACTGGC-ACCCATC-TCTA-GCCGATGCCATGTCCCAGACATG
* * * * * * *
68976280 GTTTTATACTAGCTCTCGTATATACGT-ACTAATG
62 GTCTTACACTGGCACTC--ATA-ATGTGGCCAATG
*** * * *
68976314 CATGTCTTGGACATGTCTTACACTAGCA--CAACTCTTAGCCGATG-CATGTCCCAGACA-CGTC
1 CATGTCCCAGACATGTCTTACACTGGCACCCATCTC-TAGCCGATGCCATGTCCCAGACATGGTC
* ** * *
68976375 TTACATTGGCTA-TCATCGTCGAGGCCGATG
65 TTACACTGGC-ACTCATAAT-GTGGCCAATG
68976405 CATGTCCCAGACATGTCTTACACTGGCACCCATCTCTACGCCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTGGCACCCATCTCTA-GCCGATGCCATGTCCCAGACATGGTC
68976470 TTACACTGGCACTCATAATGTGGCCAATG
65 TTACACTGGCACTCATAATGTGGCCAATG
*
68976499 CATGTCCCAGACATGCCTTACACTGGCAC
1 CATGTCCCAGACATGTCTTACACTGGCAC
68976528 ACAAGAAATC
Statistics
Matches: 170, Mismatches: 33, Indels: 26
0.74 0.14 0.11
Matches are distributed among these distances:
90 3 0.02
91 28 0.16
92 13 0.08
93 24 0.14
94 60 0.35
95 19 0.11
96 1 0.01
97 11 0.06
98 11 0.06
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTGGCACCCATCTCTAGCCGATGCCATGTCCCAGACATGGTCT
TACACTGGCACTCATAATGTGGCCAATG
Found at i:68981472 original size:14 final size:14
Alignment explanation
Indices: 68981453--68981499 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
68981443 AGTCTCCAAT
68981453 TATAATAAACATGA
1 TATAATAAACATGA
68981467 TATAAT-AA-AT--
1 TATAATAAACATGA
*
68981477 TATAGTAAACATGA
1 TATAATAAACATGA
68981491 TATAATAAA
1 TATAATAAA
68981500 TAAAACATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
10 5 0.19
11 2 0.07
12 4 0.15
13 2 0.07
14 14 0.52
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.32
Consensus pattern (14 bp):
TATAATAAACATGA
Found at i:68981479 original size:24 final size:24
Alignment explanation
Indices: 68981450--68981500 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
68981440 ATTAGTCTCC
68981450 AATTATAATAAACATGATATAATA
1 AATTATAATAAACATGATATAATA
*
68981474 AATTATAGTAAACATGATATAATA
1 AATTATAATAAACATGATATAATA
68981498 AAT
1 AAT
68981501 AAAACATAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (24 bp):
AATTATAATAAACATGATATAATA
Found at i:68986894 original size:55 final size:55
Alignment explanation
Indices: 68986810--68986920 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
68986800 TGCCCCAGAA
*
68986810 AACCAACCTCATGCAATGAAAATCCACATTTACTAAACTTTGCATATAACTACTT
1 AACCAACCTCACGCAATGAAAATCCACATTTACTAAACTTTGCATATAACTACTT
68986865 AACCAACCTCACGCAATGAAAATCCACATTTACTAAACTTTGCATATAACTACTT
1 AACCAACCTCACGCAATGAAAATCCACATTTACTAAACTTTGCATATAACTACTT
68986920 A
1 A
68986921 TCACGCAGAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.41, C:0.26, G:0.05, T:0.28
Consensus pattern (55 bp):
AACCAACCTCACGCAATGAAAATCCACATTTACTAAACTTTGCATATAACTACTT
Found at i:68994353 original size:55 final size:55
Alignment explanation
Indices: 68994269--68994379 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 55
68994259 TGCCCCAGAA
*
68994269 AACCAACCTCACGCAATGAAAATCCACATTTACTAAACTTTGCACATAACTACTT
1 AACCAACCGCACGCAATGAAAATCCACATTTACTAAACTTTGCACATAACTACTT
*
68994324 AACCAACCGCACGCAATGAAAATCCACATTTACTAAACTTTGCATATAACTACTT
1 AACCAACCGCACGCAATGAAAATCCACATTTACTAAACTTTGCACATAACTACTT
68994379 A
1 A
68994380 TCACGCAGAG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.41, C:0.28, G:0.06, T:0.25
Consensus pattern (55 bp):
AACCAACCGCACGCAATGAAAATCCACATTTACTAAACTTTGCACATAACTACTT
Found at i:69005804 original size:46 final size:47
Alignment explanation
Indices: 69005707--69005833 Score: 121
Period size: 46 Copynumber: 2.7 Consensus size: 47
69005697 AATCGGTAAG
* * * *** *
69005707 TACCTATACCATGGCCCGTAGCCAAATCAAGGTTACTTATCTTGGAG
1 TACCTATACCATGACCCGTAGCCAAATCAAGGTAACTCATCTCAAAA
* *
69005754 TACCTGTACCATGACCC-TAGCCAAATCAAGGTAACTCCTCTCAAAA
1 TACCTATACCATGACCCGTAGCCAAATCAAGGTAACTCATCTCAAAA
* * ** *
69005800 TACCTATATCATGGCTTGTAGCCAAATTAAGGTA
1 TACCTATACCATGACCCGTAGCCAAATCAAGGTA
69005834 TTATTCGCAC
Statistics
Matches: 64, Mismatches: 15, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
46 34 0.53
47 30 0.47
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (47 bp):
TACCTATACCATGACCCGTAGCCAAATCAAGGTAACTCATCTCAAAA
Found at i:69008414 original size:46 final size:46
Alignment explanation
Indices: 69008317--69008422 Score: 122
Period size: 46 Copynumber: 2.3 Consensus size: 46
69008307 AATCGGTAAG
* * * *** *
69008317 TACCTATACCATGGCCCGTAGCCAAATCAAGGTTACTTATCTTGGAG
1 TACCTATACCAT-GACAGTAGCCAAATCAAGGTTACTCATCTCAAAA
*
69008364 TACCTATACCATGACAGTAGCCAAATCAAGGTTACTCCTCTCAAAA
1 TACCTATACCATGACAGTAGCCAAATCAAGGTTACTCATCTCAAAA
*
69008410 TACCTATATCATG
1 TACCTATACCATG
69008423 GCTTGTAGTC
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
46 38 0.76
47 12 0.24
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.27
Consensus pattern (46 bp):
TACCTATACCATGACAGTAGCCAAATCAAGGTTACTCATCTCAAAA
Found at i:69015457 original size:44 final size:44
Alignment explanation
Indices: 69015394--69015496 Score: 181
Period size: 44 Copynumber: 2.3 Consensus size: 44
69015384 AATATTATCT
*
69015394 CCCTGAAGTTGTAGTAGAGTAGATTAAAGCTATAAATCCTATAC
1 CCCTGAAGTTGTAGTAGAGTAGATTAAAGCTACAAATCCTATAC
69015438 CCCTGAAGTTGCT-GTAGAGTAGATTAAAGCTACAAATCCTATAC
1 CCCTGAAGTTG-TAGTAGAGTAGATTAAAGCTACAAATCCTATAC
69015482 CCCTGAAGTTGTAGT
1 CCCTGAAGTTGTAGT
69015497 GGGTCTGATT
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
43 1 0.02
44 54 0.96
45 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (44 bp):
CCCTGAAGTTGTAGTAGAGTAGATTAAAGCTACAAATCCTATAC
Found at i:69015559 original size:50 final size:50
Alignment explanation
Indices: 69015498--69015594 Score: 158
Period size: 50 Copynumber: 1.9 Consensus size: 50
69015488 AGTTGTAGTG
*
69015498 GGTCTGATTGAATCTACCATAACGAATCTTATCTCCCTGAAGATGCAGCA
1 GGTCGGATTGAATCTACCATAACGAATCTTATCTCCCTGAAGATGCAGCA
* * *
69015548 GGTCGGATTGAATTTACCATAGCGAATCTTATCTCCCTGAAGTTGCA
1 GGTCGGATTGAATCTACCATAACGAATCTTATCTCCCTGAAGATGCA
69015595 ATGGAGTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (50 bp):
GGTCGGATTGAATCTACCATAACGAATCTTATCTCCCTGAAGATGCAGCA
Found at i:69015608 original size:50 final size:51
Alignment explanation
Indices: 69015482--69015614 Score: 148
Period size: 50 Copynumber: 2.7 Consensus size: 51
69015472 AATCCTATAC
* *
69015482 CCCTGAAGTTGTAGTGG-GTCTGATTGAATCTACCATAACGAATCTTATCT
1 CCCTGAAGTTGCAATGGAGTCTGATTGAATCTACCATAACGAATCTTATCT
* * * * *
69015532 CCCTGAAGATGC-A-GCAGGTCGGATTGAATTTACCATAGCGAATCTTATCT
1 CCCTGAAGTTGCAATGGA-GTCTGATTGAATCTACCATAACGAATCTTATCT
* *
69015582 CCCTGAAGTTGCAATGGAGT-TTATTGAAGCTAC
1 CCCTGAAGTTGCAATGGAGTCTGATTGAATCTAC
69015615 AAATCGTATA
Statistics
Matches: 66, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
48 1 0.02
50 60 0.91
51 3 0.05
52 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (51 bp):
CCCTGAAGTTGCAATGGAGTCTGATTGAATCTACCATAACGAATCTTATCT
Found at i:69015653 original size:44 final size:44
Alignment explanation
Indices: 69015604--69016312 Score: 272
Period size: 44 Copynumber: 15.3 Consensus size: 44
69015594 AATGGAGTTT
* ** *
69015604 ATTGAAGCTACAAATCGTATACCTCAAAAGTTGTAGTGGGTCAG
1 ATTGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAG
* * * * **
69015648 ATTGAATCTACCATATCGAATCT-TATCTCTTTAAAGTTGCAGTAAAGT-AG
1 ATTGAAGCTA-CAAATC----CTATA-C-CTCTGAAGTTGCAGT-GGGTCAG
* * *
69015698 ATTAAAGCTACAAATCTTATACCACTGAAGTTGCAGTGGGTCAG
1 ATTGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAG
* * *
69015742 ATTGAATCTACCATAGTGAATCTTAT-CTCTTTGAAGTTGCAGTGGAGT-AG
1 ATTGAAGCTA-C--A---AATCCTATAC-CTCTGAAGTTGCAGTGG-GTCAG
* *
69015792 ATTGAAGCTACAAATCCTATACCTCTGAAGTTACAGTAGAG-CAG
1 ATTGAAGCTACAAATCCTATACCTCTGAAGTTGCAGT-GGGTCAG
* *
69015836 ATTGAAGCTACAAATCCTATACCTCTGAAGTTGTAGTGGAG-CAA
1 ATTGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGG-GTCAG
* * *
69015880 ATTGAAGCTACAAATTCTATATCCT-TGAAATTGCAGTGGGTCAA
1 ATTGAAGCTACAAATCCTATA-CCTCTGAAGTTGCAGTGGGTCAG
* * * * *
69015924 ATTGAATCTACCATAGCGAATCTTAT-CTCCCTGAGGTTGCAGTGGAGT-TG
1 ATTGAAGCTA-C--A---AATCCTATAC-CTCTGAAGTTGCAGTGG-GTCAG
* * * *
69015974 ATTAAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGAGT-AGG
1 ATTGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGGTCA-G
* * *
69016018 ATTGAAGTTACCATAATGAATCT-TATCTCCCTGAAGTT-CAAGTGGAG-CAAG
1 ATTGAAGCTA-CA-AAT---CCTATA-C-CTCTGAAGTTGC-AGTGG-GTC-AG
* **
69016069 A-TGAAGCTACAAATCCTATACCTTTGAAGTTATAGTGGGTCAG
1 ATTGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAG
* * * * *
69016112 TTTGAAGTTACCATAGCGAATCTTAGCTACCTC--AAGTTGTAGTAGAG-CAAG
1 ATTGAAG----C-TA-CAAATCCTA--TACCTCTGAAGTTGCAGT-GGGTC-AG
* * *
69016163 A-TGAAGCTACAAATCATATACCCCTGAAGTTGCAGTGGGTTAG
1 ATTGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAG
* *
69016206 ATTGAAGTTACCATAGCGAATCTTAT-CTCTCTGAAGTTGCAGTGGAG-CAAG
1 ATTGAAG----C-TA-CAAATCCTATAC-CTCTGAAGTTGCAGTGG-GTC-AG
* * * *
69016257 A-TGAAGTTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCGG
1 ATTGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAG
* *
69016300 ACTGAAACTACAA
1 ATTGAAGCTACAA
69016313 CAACAAATCT
Statistics
Matches: 506, Mismatches: 83, Indels: 152
0.68 0.11 0.21
Matches are distributed among these distances:
42 5 0.01
43 17 0.03
44 239 0.47
45 25 0.05
46 8 0.02
47 4 0.01
48 10 0.02
49 22 0.04
50 153 0.30
51 17 0.03
52 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
ATTGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAG
Found at i:69015668 original size:94 final size:94
Alignment explanation
Indices: 69015332--69016346 Score: 756
Period size: 94 Copynumber: 10.9 Consensus size: 94
69015322 CAACAAAACA
* * * * * *
69015332 ACAAATCCTATACCCCTGAAGTTGCAGT-GGTC-GAAATGAATCTAACATAACAAATATTATCTC
1 ACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAG-ATTGAATCTACCATAGCGAATCTTATCTC
* * * *
69015395 CCTGAAGTTGTAGTAGAGTAGATTAAAGCT
65 CCTGAAGTTGCAGTGGAGTAAATTGAAGCT
* * * * * * *
69015425 ATAAATCCTATACCCCTGAAGTTGCTGTAGAGT-AGATT-AA---AGC-TA-CAAATCCTATAC-
1 ACAAATCCTATACCTCTGAAGTTGCAGT-GGGTCAGATTGAATCTACCATAGCGAATCTTAT-CT
* ** *
69015482 CCCTGAAGTTGTAGTGG-GTCTGATTGAATCT
64 CCCTGAAGTTGCAGTGGAGT-AAATTGAAGCT
* * * ** * *
69015513 ACCATAACGAATCTTAT-CTCCCTGAAGATGCAGCAGGTCGGATTGAATTTACCATAGCGAATCT
1 A-C---A--AATCCTATAC-CTCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCGAATCT
* **
69015577 TATCTCCCTGAAGTTGCAATGGAGTTTATTGAAGCT
59 TATCTCCCTGAAGTTGCAGTGGAGTAAATTGAAGCT
* ** * * *
69015613 ACAAATCGTATACCTCAAAAGTTGTAGTGGGTCAGATTGAATCTACCATATCGAATCTTATCTCT
1 ACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCGAATCTTATCTCC
* * ** * *
69015678 TTAAAGTTGCAGTAAAGTAGATTAAAGCT
66 CTGAAGTTGCAGTGGAGTAAATTGAAGCT
* * * *
69015707 ACAAATCTTATACCACTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGTGAATCTTATCTCT
1 ACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCGAATCTTATCTCC
* *
69015772 TTGAAGTTGCAGTGGAGTAGATTGAAGCT
66 CTGAAGTTGCAGTGGAGTAAATTGAAGCT
* * * *
69015801 ACAAATCCTATACCTCTGAAGTTACAGTAGAG-CAGATTGAAGCTA-C--A---AATCCTATAC-
1 ACAAATCCTATACCTCTGAAGTTGCAGT-GGGTCAGATTGAATCTACCATAGCGAATCTTAT-CT
* * *
69015858 CTCTGAAGTTGTAGTGGAGCAAATTGAAGCT
64 CCCTGAAGTTGCAGTGGAGTAAATTGAAGCT
* * *
69015889 ACAAATTCTATATCCT-TGAAATTGCAGTGGGTCAAATTGAATCTACCATAGCGAATCTTATCTC
1 ACAAATCCTATA-CCTCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCGAATCTTATCTC
* ** *
69015953 CCTGAGGTTGCAGTGGAGTTGATTAAAGCT
65 CCTGAAGTTGCAGTGGAGTAAATTGAAGCT
* * * **
69015983 ACAAATCCTATACCCCTAAAGTTGCAGTGAGT-AGGATTGAAGT-TACCATAATGAATCTTATCT
1 ACAAATCCTATACCTCTGAAGTTGCAGTGGGTCA-GATTGAA-TCTACCATAGCGAATCTTATCT
*
69016046 CCCTGAAGTT-CAAGTGGAGCAAGA-TGAAGCT
64 CCCTGAAGTTGC-AGTGGAGTAA-ATTGAAGCT
* ** * * *
69016077 ACAAATCCTATACCTTTGAAGTTATAGTGGGTCAGTTTGAAGT-TACCATAGCGAATCTTAGCTA
1 ACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAGATTGAA-TCTACCATAGCGAATCTTATCTC
* * * *
69016141 CCTCAAGTTGTAGTAGAGCAAGA-TGAAGCT
65 CCTGAAGTTGCAGTGGAGTAA-ATTGAAGCT
* * *
69016171 ACAAATCATATACCCCTGAAGTTGCAGTGGGTTAGATTGAAGT-TACCATAGCGAATCTTATCTC
1 ACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAGATTGAA-TCTACCATAGCGAATCTTATCTC
* * *
69016235 TCTGAAGTTGCAGTGGAGCAAGA-TGAAGTT
65 CCTGAAGTTGCAGTGGAGTAA-ATTGAAGCT
* * * * * * * * * *
69016265 ACAAATCCTATACCCCTGAAGTTGTAGTGGGTCGGACTGAAACTACAACAACAAATCTTAACTCC
1 ACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCGAATCTTATCTCC
* *
69016330 TTGAAGTTGCAATGGAG
66 CTGAAGTTGCAGTGGAG
69016347 CAAGATGAAA
Statistics
Matches: 745, Mismatches: 136, Indels: 81
0.77 0.14 0.08
Matches are distributed among these distances:
87 4 0.01
88 99 0.13
89 8 0.01
90 2 0.00
91 2 0.00
92 1 0.00
93 37 0.05
94 539 0.72
95 11 0.01
96 1 0.00
98 2 0.00
99 4 0.01
100 33 0.04
101 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (94 bp):
ACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCGAATCTTATCTCC
CTGAAGTTGCAGTGGAGTAAATTGAAGCT
Found at i:69015785 original size:50 final size:48
Alignment explanation
Indices: 69015484--69016250 Score: 233
Period size: 44 Copynumber: 16.3 Consensus size: 48
69015474 TCCTATACCC
* * *
69015484 CTGAAGTTGTAGTGGGTCTGATTGAATCTACCATAACGAATCTTATCTCC
1 CTGAAGTTGCAGTGGGTCAGATTGAATCTACCAT-A-GAATCTTATCTCT
* ** * * *
69015534 CTGAAGATGCAGCAGGTCGGATTGAATTTACCATAGCGAATCTTATCTCC
1 CTGAAGTTGCAGTGGGTCAGATTGAATCTACCATA--GAATCTTATCTCT
* ** * *
69015584 CTGAAGTTGCAATGGAGT-TTATTGAAGCTA-C--A-AATCGTATAC-CT
1 CTGAAGTTGCAGTGG-GTCAGATTGAATCTACCATAGAATCTTAT-CTCT
** *
69015628 CAAAAGTTGTAGTGGGTCAGATTGAATCTACCATATCGAATCTTATCTCT
1 CTGAAGTTGCAGTGGGTCAGATTGAATCTACCATA--GAATCTTATCTCT
* * ** * * *
69015678 TTAAAGTTGCAGTAAAGT-AGATTAAAGCTA-C--A-AATCTTATAC-CA
1 CTGAAGTTGCAGT-GGGTCAGATTGAATCTACCATAGAATCTTAT-CTCT
69015722 CTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGTGAATCTTATCTCT
1 CTGAAGTTGCAGTGGGTCAGATTGAATCTACCATA--GAATCTTATCTCT
* * *
69015772 TTGAAGTTGCAGTGGAGT-AGATTGAAGCTA-C--A-AATCCTATAC-CT
1 CTGAAGTTGCAGTGG-GTCAGATTGAATCTACCATAGAATCTTAT-CTCT
* * * *
69015816 CTGAAGTTACAGTAGAG-CAGATTGAAGCTA-C--A-AATCCTATAC-CT
1 CTGAAGTTGCAGT-GGGTCAGATTGAATCTACCATAGAATCTTAT-CTCT
* * * *
69015860 CTGAAGTTGTAGTGGAG-CAAATTGAAGCTA-CA-A-ATTCTATATC-CT
1 CTGAAGTTGCAGTGG-GTCAGATTGAATCTACCATAGAATCT-TATCTCT
* * *
69015905 -TGAAATTGCAGTGGGTCAAATTGAATCTACCATAGCGAATCTTATCTCC
1 CTGAAGTTGCAGTGGGTCAGATTGAATCTACCATA--GAATCTTATCTCT
* * * * * *
69015954 CTGAGGTTGCAGTGGAGT-TGATTAAAGCTA-C--A-AATCCTATAC-CC
1 CTGAAGTTGCAGTGG-GTCAGATTGAATCTACCATAGAATCTTAT-CTCT
* * *
69015998 CTAAAGTTGCAGTGAGT-AGGATTGAAGT-TACCATAATGAATCTTATCTCC
1 CTGAAGTTGCAGTGGGTCA-GATTGAA-TCTACCAT-A-GAATCTTATCTCT
* *
69016048 CTGAAGTT-CAAGTGGAG-CAAGA-TGAAGCTA-C--A-AATCCTATAC-CT
1 CTGAAGTTGC-AGTGG-GTC-AGATTGAATCTACCATAGAATCTTAT-CTCT
* ** * *
69016092 TTGAAGTTATAGTGGGTCAGTTTGAAGT-TACCATAGCGAATCTTAGCTAC-
1 CTGAAGTTGCAGTGGGTCAGATTGAA-TCTACCATA--GAATCTTATCT-CT
* * * * * *
69016142 CTCAAGTTGTAGTAGAG-CAAGA-TGAAGCTA-C--A-AATCATATAC-CC
1 CTGAAGTTGCAGT-GGGTC-AGATTGAATCTACCATAGAATCTTAT-CTCT
*
69016186 CTGAAGTTGCAGTGGGTTAGATTGAAGT-TACCATAGCGAATCTTATCTCT
1 CTGAAGTTGCAGTGGGTCAGATTGAA-TCTACCATA--GAATCTTATCTCT
69016236 CTGAAGTTGCAGTGG
1 CTGAAGTTGCAGTGG
69016251 AGCAAGATGA
Statistics
Matches: 541, Mismatches: 96, Indels: 160
0.68 0.12 0.20
Matches are distributed among these distances:
43 17 0.03
44 233 0.43
45 21 0.04
46 5 0.01
47 9 0.02
48 5 0.01
49 18 0.03
50 216 0.40
51 16 0.03
52 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (48 bp):
CTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGAATCTTATCTCT
Found at i:69016262 original size:50 final size:49
Alignment explanation
Indices: 69015932--69016266 Score: 149
Period size: 50 Copynumber: 7.1 Consensus size: 49
69015922 AAATTGAATC
* ** *
69015932 TACCATAGCGAATCTTATCTCCCTGAGGTTGCAGTGGAG-TTGATTAA--
1 TACCATA-CGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGT
* * * * * *
69015979 -AGC-TACAAATCCTATAC-CCCTAAAGTTGCAGT-GAGTAGGATTGAAGT
1 TACCATACGAATCTTAT-CTCCCTGAAGTTGCAGTGGAGCAAGA-TGAAGT
*
69016026 TACCATAATGAATCTTATCTCCCTGAAGTT-CAAGTGGAGCAAGATGAAG-
1 TACCAT-ACGAATCTTATCTCCCTGAAGTTGC-AGTGGAGCAAGATGAAGT
* * ** ** *
69016075 ---C-TACAAATCCTATAC-CTTTGAAGTTATAGTGG-GTC-AGTTTGAAGT
1 TACCATACGAATCTTAT-CTCCCTGAAGTTGCAGTGGAG-CAAG-ATGAAGT
* * * * *
69016120 TACCATAGCGAATCTTAGCTACCTCAAGTTGTAGTAGAGCAAGATGAAG-
1 TACCATA-CGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGT
* * **
69016169 ---C-TACAAATCATATAC-CCCTGAAGTTGCAGTGG-GTTAGATTGAAGT
1 TACCATACGAATCTTAT-CTCCCTGAAGTTGCAGTGGAGCAAGA-TGAAGT
*
69016214 TACCATAGCGAATCTTATCTCTCTGAAGTTGCAGTGGAGCAAGATGAAGT
1 TACCATA-CGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGT
69016264 TAC
1 TAC
69016267 AAATCCTATA
Statistics
Matches: 208, Mismatches: 46, Indels: 65
0.65 0.14 0.20
Matches are distributed among these distances:
43 10 0.05
44 75 0.36
45 11 0.05
46 4 0.02
48 4 0.02
49 9 0.04
50 82 0.39
51 13 0.06
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (49 bp):
TACCATACGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGT
Found at i:69017449 original size:23 final size:23
Alignment explanation
Indices: 69017423--69017469 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
69017413 AAGAAGAAGA
*
69017423 AAGTAAGAATTTTTTTTTGAAAC
1 AAGTAAGAAATTTTTTTTGAAAC
**
69017446 AAGTTTGAAATTTTTTTTGAAAC
1 AAGTAAGAAATTTTTTTTGAAAC
69017469 A
1 A
69017470 GGTTTAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.45
Consensus pattern (23 bp):
AAGTAAGAAATTTTTTTTGAAAC
Found at i:69017474 original size:23 final size:23
Alignment explanation
Indices: 69017433--69017487 Score: 83
Period size: 23 Copynumber: 2.3 Consensus size: 23
69017423 AAGTAAGAAT
*
69017433 TTTTTTTTGAAACAAGTTTGAAA
1 TTTTTTTTGAAACAAGTTTAAAA
*
69017456 TTTTTTTTGAAACAGGTTTAAAA
1 TTTTTTTTGAAACAAGTTTAAAA
69017479 TTATTTTTT
1 TT-TTTTTT
69017488 AAAATTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 23 0.79
24 6 0.21
ACGTcount: A:0.31, C:0.04, G:0.11, T:0.55
Consensus pattern (23 bp):
TTTTTTTTGAAACAAGTTTAAAA
Found at i:69017490 original size:13 final size:13
Alignment explanation
Indices: 69017472--69017513 Score: 70
Period size: 13 Copynumber: 3.4 Consensus size: 13
69017462 TTGAAACAGG
69017472 TTTAAAATTATTT
1 TTTAAAATTATTT
69017485 TTTAAAATTATTT
1 TTTAAAATTATTT
69017498 TTT-AAA-TATTT
1 TTTAAAATTATTT
69017509 TTTAA
1 TTTAA
69017514 CTTATATAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.29
12 4 0.14
13 16 0.57
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTAAAATTATTT
Found at i:69017507 original size:11 final size:12
Alignment explanation
Indices: 69017476--69017518 Score: 61
Period size: 13 Copynumber: 3.6 Consensus size: 12
69017466 AACAGGTTTA
69017476 AAATTATTTTTT
1 AAATTATTTTTT
69017488 AAAATTATTTTTT
1 -AAATTATTTTTT
69017501 AAA-TATTTTTT
1 AAATTATTTTTT
*
69017512 AACTTAT
1 AAATTAT
69017519 ATAGACTTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 10 0.36
12 6 0.21
13 12 0.43
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (12 bp):
AAATTATTTTTT
Found at i:69023502 original size:3 final size:3
Alignment explanation
Indices: 69023494--69023569 Score: 50
Period size: 3 Copynumber: 24.7 Consensus size: 3
69023484 TATAAGTAGC
* * *
69023494 AAT AAT AAT AAT AAC AAT AAT AAT GAAT AAT ACA- AA- AATT GAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT A-AT AAT AA-T AAT AAT
*
69023540 AA- AGT AAT AAAT AAAT AAT AAT AAT AAT AA
1 AAT AAT AAT -AAT -AAT AAT AAT AAT AAT AA
69023570 GGGCAAGAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
2 4 0.07
3 43 0.73
4 12 0.20
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:69023516 original size:15 final size:15
Alignment explanation
Indices: 69023480--69023523 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
69023470 GATGAAAATG
*
69023480 ATAAT-ATAAGTAGCA
1 ATAATAATAA-TAACA
69023495 ATAATAATAATAACA
1 ATAATAATAATAACA
69023510 ATAATAATGAATAA
1 ATAATAAT-AATAA
69023524 TACAAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 17 0.65
16 9 0.35
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.27
Consensus pattern (15 bp):
ATAATAATAATAACA
Found at i:69025520 original size:49 final size:48
Alignment explanation
Indices: 69025465--69025581 Score: 153
Period size: 49 Copynumber: 2.4 Consensus size: 48
69025455 TTTCACATGA
* * *
69025465 TCGTGTGCTCCACATGGCCAAGCCATACGGGCTGCAAAAACACACATAG
1 TCGTGTGC-CCACATGGCCAAGCCACACAGGCTACAAAAACACACATAG
* *
69025514 TTGTGTGCCTCACATGGCCAAGCCACACAGGCTACAAAAACACACATGG
1 TCGTGTGCC-CACATGGCCAAGCCACACAGGCTACAAAAACACACATAG
*
69025563 TCGTGTGCCCCACACGGCC
1 TCGTGTG-CCCACATGGCC
69025582 TGGCACACGG
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.02
49 56 0.95
50 2 0.03
ACGTcount: A:0.28, C:0.33, G:0.22, T:0.16
Consensus pattern (48 bp):
TCGTGTGCCCACATGGCCAAGCCACACAGGCTACAAAAACACACATAG
Found at i:69028446 original size:27 final size:28
Alignment explanation
Indices: 69028398--69028526 Score: 90
Period size: 27 Copynumber: 4.8 Consensus size: 28
69028388 ACGTCTTATG
* **
69028398 TATTTTAAAT-TATTATAGATTTT-AAA
1 TATTTTACATATATTATTTATTTTGAAA
*
69028424 TATTTTACATATATTATTTATTTT-AAC
1 TATTTTACATATATTATTTATTTTGAAA
* * *
69028451 TACTATAC--ATATTACTTATTTTGAAA
1 TATTTTACATATATTATTTATTTTGAAA
* **
69028477 TATTTT-TATACGTTATTTATTTTGAAA
1 TATTTTACATATATTATTTATTTTGAAA
* * * *
69028504 TATTATATATGTATTATCTATTT
1 TATTTTACATATATTATTTATTT
69028527 AAGTTTCTTT
Statistics
Matches: 79, Mismatches: 19, Indels: 8
0.75 0.18 0.08
Matches are distributed among these distances:
25 13 0.16
26 15 0.19
27 39 0.49
28 12 0.15
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.56
Consensus pattern (28 bp):
TATTTTACATATATTATTTATTTTGAAA
Found at i:69028672 original size:24 final size:23
Alignment explanation
Indices: 69028575--69028674 Score: 71
Period size: 24 Copynumber: 4.2 Consensus size: 23
69028565 TAAAAAAAAC
69028575 TATTTTAAAATTCTT-T-TATTATT
1 TATTTTAAAATT-TTATATATTA-T
** *
69028598 TATCGTAAACCTTTTAT-TATTAT
1 TATTTTAAA-ATTTTATATATTAT
* * *
69028621 TAATTTTAAGATTTCATATGTTACT
1 T-ATTTTAAAATTTTATATATTA-T
69028646 TATTTTAAAATTTTATATATGTAT
1 TATTTTAAAATTTTATATAT-TAT
69028670 TATTT
1 TATTT
69028675 ATTTTGGATT
Statistics
Matches: 59, Mismatches: 12, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
23 16 0.27
24 39 0.66
25 4 0.07
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (23 bp):
TATTTTAAAATTTTATATATTAT
Found at i:69030899 original size:26 final size:26
Alignment explanation
Indices: 69030862--69030945 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
69030852 TGATACAAAT
* *
69030862 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
69030888 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
69030914 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
69030940 TGATAA
1 TGATAA
69030946 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:69034464 original size:67 final size:67
Alignment explanation
Indices: 69034356--69034487 Score: 237
Period size: 67 Copynumber: 2.0 Consensus size: 67
69034346 ATCCAACGAA
*
69034356 TAATGACATTTATACATACCTCAGTACTGTTGATCAACAATATCATTTGATTATAATAAACTACC
1 TAATGACATTTATACATACCTCAATACTGTTGATCAACAATATCATTTGATTATAATAAACTACC
69034421 AG
66 AG
* *
69034423 TAATGACATTTATACATACCTCAATACTGTTGATCACCAATATCATTTGCTTATAATAAACTACC
1 TAATGACATTTATACATACCTCAATACTGTTGATCAACAATATCATTTGATTATAATAAACTACC
69034488 TGTTTAAAGA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.35
Consensus pattern (67 bp):
TAATGACATTTATACATACCTCAATACTGTTGATCAACAATATCATTTGATTATAATAAACTACC
AG
Found at i:69034657 original size:21 final size:22
Alignment explanation
Indices: 69034611--69034657 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
69034601 TGGGTATAGA
*
69034611 AAATATATTAAATTCTCATTTC
1 AAATATATTAAATACTCATTTC
*
69034633 AAATATA-TAAGTACTCAATTT-
1 AAATATATTAAATACTC-ATTTC
69034654 AAAT
1 AAAT
69034658 CCATTTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (22 bp):
AAATATATTAAATACTCATTTC
Found at i:69046907 original size:20 final size:20
Alignment explanation
Indices: 69046882--69046922 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
69046872 AAGATATGTG
69046882 TATGGAGGATTCTCAGGATT
1 TATGGAGGATTCTCAGGATT
69046902 TATGGAGGATTCTCAGGATT
1 TATGGAGGATTCTCAGGATT
69046922 T
1 T
69046923 TGAAGATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.37
Consensus pattern (20 bp):
TATGGAGGATTCTCAGGATT
Found at i:69051386 original size:42 final size:42
Alignment explanation
Indices: 69051336--69051488 Score: 144
Period size: 42 Copynumber: 3.6 Consensus size: 42
69051326 CAAATCTCAA
* **
69051336 CTCCCTAAAGTTGTAGTGGAATAGTTTGAAGTTAGATCTTAT
1 CTCCCTAAAGTTGCAGTGGAGCAGTTTGAAGTTAGATCTTAT
* * * * *
69051378 CTCCCTAAAGTTGCAGTGGAGCAGGTCTAAAGTTACAAATCTCAA
1 CTCCCTAAAGTTGCAGTGGAGCA-GTTTGAAGTT--AGATCTTAT
** * **
69051423 CTCCCGGAAGTTACAGTGGAGCAAATTGAAGTTAGATCTTAT
1 CTCCCTAAAGTTGCAGTGGAGCAGTTTGAAGTTAGATCTTAT
* *
69051465 CTCCCTAAAGTTGTAGTGAAGCAG
1 CTCCCTAAAGTTGCAGTGGAGCAG
69051489 ACTGAAGATA
Statistics
Matches: 84, Mismatches: 24, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
42 44 0.52
43 8 0.10
44 6 0.07
45 26 0.31
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (42 bp):
CTCCCTAAAGTTGCAGTGGAGCAGTTTGAAGTTAGATCTTAT
Found at i:69051401 original size:87 final size:87
Alignment explanation
Indices: 69051286--69051488 Score: 280
Period size: 87 Copynumber: 2.3 Consensus size: 87
69051276 CATGGTGAAC
* * * * **
69051286 CTTATCTCCCTGAAGTTACATTGAAGCAGGTCAAAAGTTACAAATCTCAACTCCCTAAAGTTGTA
1 CTTATCTCCCTAAAGTTGCAGTGAAGCAGGTCAAAAGTTACAAATCTCAACTCCCGAAAGTTACA
* **
69051351 GTGGAATAGTTTGAAGTTAGAT
66 GTGGAACAAATTGAAGTTAGAT
* * *
69051373 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTCTAAAGTTACAAATCTCAACTCCCGGAAGTTACA
1 CTTATCTCCCTAAAGTTGCAGTGAAGCAGGTCAAAAGTTACAAATCTCAACTCCCGAAAGTTACA
*
69051438 GTGGAGCAAATTGAAGTTAGAT
66 GTGGAACAAATTGAAGTTAGAT
*
69051460 CTTATCTCCCTAAAGTTGTAGTGAAGCAG
1 CTTATCTCCCTAAAGTTGCAGTGAAGCAG
69051489 ACTGAAGATA
Statistics
Matches: 101, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
87 101 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (87 bp):
CTTATCTCCCTAAAGTTGCAGTGAAGCAGGTCAAAAGTTACAAATCTCAACTCCCGAAAGTTACA
GTGGAACAAATTGAAGTTAGAT
Found at i:69051434 original size:45 final size:45
Alignment explanation
Indices: 69051291--69051445 Score: 145
Period size: 45 Copynumber: 3.5 Consensus size: 45
69051281 TGAACCTTAT
* * * *
69051291 CTCCCTGAAGTTACATTGAAGCAGGTCAAAAGTTACAAATCTCAA
1 CTCCCTAAAGTTACAGTGGAGCAGGTCTAAAGTTACAAATCTCAA
** ** * * * * *
69051336 CTCCCTAAAGTTGTAGTGGAATA-GTTTGAAGTT--AGATCTTAT
1 CTCCCTAAAGTTACAGTGGAGCAGGTCTAAAGTTACAAATCTCAA
*
69051378 CTCCCTAAAGTTGCAGTGGAGCAGGTCTAAAGTTACAAATCTCAA
1 CTCCCTAAAGTTACAGTGGAGCAGGTCTAAAGTTACAAATCTCAA
**
69051423 CTCCCGGAAGTTACAGTGGAGCA
1 CTCCCTAAAGTTACAGTGGAGCA
69051446 AATTGAAGTT
Statistics
Matches: 83, Mismatches: 24, Indels: 6
0.73 0.21 0.05
Matches are distributed among these distances:
42 26 0.31
43 8 0.10
44 7 0.08
45 42 0.51
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (45 bp):
CTCCCTAAAGTTACAGTGGAGCAGGTCTAAAGTTACAAATCTCAA
Found at i:69056399 original size:26 final size:26
Alignment explanation
Indices: 69056363--69056472 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
69056353 TGATACAAAT
69056363 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
69056389 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
69056415 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
69056441 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
69056467 TGATAA
1 TGATAA
69056473 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:69058121 original size:27 final size:27
Alignment explanation
Indices: 69058080--69058219 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
69058070 GAGGAAGCGT
*
69058080 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
69058107 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
69058134 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
69058161 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
69058189 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
69058215 TCTGG
1 TCTGG
69058220 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
26 5 0.05
27 82 0.80
28 15 0.15
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:69058165 original size:54 final size:55
Alignment explanation
Indices: 69058080--69058219 Score: 203
Period size: 54 Copynumber: 2.6 Consensus size: 55
69058070 GAGGAAGCGT
* * *
69058080 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
69058134 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
69058189 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
69058220 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 60 0.77
55 18 0.23
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:69061575 original size:3 final size:3
Alignment explanation
Indices: 69061557--69061720 Score: 124
Period size: 3 Copynumber: 54.7 Consensus size: 3
69061547 TTATGATTTA
* * * *
69061557 TAT TAT TGT TAG TAT TAT TAT TAT TCCT TAG T-T TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * *
69061602 TAT T-T TAT CAT TAT T-T TCCAT TAT TTT TAT TAT CAA TA- TAC TAT
1 TAT TAT TAT TAT TAT TAT T--AT TAT TAT TAT TAT TAT TAT TAT TAT
*
69061646 TAT TAT TCT TAT TAAT GTAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT T-AT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
69061693 TAT TTT CTAC T-T TAT TAT TA- TAT TAT TA
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TA
69061721 CTTTTGCTAT
Statistics
Matches: 127, Mismatches: 22, Indels: 24
0.73 0.13 0.14
Matches are distributed among these distances:
2 10 0.08
3 107 0.84
4 7 0.06
5 3 0.02
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:69066288 original size:14 final size:15
Alignment explanation
Indices: 69066269--69066299 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
69066259 AATGCATCTT
69066269 TTTGCATTCA-TTCA
1 TTTGCATTCATTTCA
69066283 TTTGCATTCATTTCA
1 TTTGCATTCATTTCA
69066298 TT
1 TT
69066300 CATTTGCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.55
Consensus pattern (15 bp):
TTTGCATTCATTTCA
Found at i:69066290 original size:10 final size:10
Alignment explanation
Indices: 69066277--69066328 Score: 65
Period size: 10 Copynumber: 5.4 Consensus size: 10
69066267 TTTTTGCATT
69066277 CATTCATTTG
1 CATTCATTTG
69066287 CATTCATTT-
1 CATTCATTTG
69066296 CATTCATTTG
1 CATTCATTTG
69066306 CATTACATTT-
1 CATT-CATTTG
*
69066316 CA-TCATATG
1 CATTCATTTG
69066325 CATT
1 CATT
69066329 AAATTACATG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
8 4 0.11
9 12 0.32
10 16 0.43
11 5 0.14
ACGTcount: A:0.25, C:0.21, G:0.06, T:0.48
Consensus pattern (10 bp):
CATTCATTTG
Found at i:69066299 original size:19 final size:20
Alignment explanation
Indices: 69066275--69066329 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 20
69066265 TCTTTTTGCA
69066275 TTCATTCATTTGCATT-CAT
1 TTCATTCATTTGCATTACAT
69066294 TTCATTCATTTGCATTACAT
1 TTCATTCATTTGCATTACAT
*
69066314 TTCA-TCATATGCATTA
1 TTCATTCATTTGCATTA
69066330 AATTACATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 27 0.79
20 7 0.21
ACGTcount: A:0.25, C:0.20, G:0.05, T:0.49
Consensus pattern (20 bp):
TTCATTCATTTGCATTACAT
Found at i:69066517 original size:12 final size:12
Alignment explanation
Indices: 69066500--69066527 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
69066490 AATTGAGAGT
69066500 GCAGATGCAAGA
1 GCAGATGCAAGA
69066512 GCAGATGCAAGA
1 GCAGATGCAAGA
69066524 GCAG
1 GCAG
69066528 TTAGCTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.18, G:0.36, T:0.07
Consensus pattern (12 bp):
GCAGATGCAAGA
Found at i:69068301 original size:40 final size:40
Alignment explanation
Indices: 69068246--69068458 Score: 216
Period size: 40 Copynumber: 5.3 Consensus size: 40
69068236 CACTAGGCCG
* * * * * *
69068246 TCGGGTCTTAGCCCGGATATGGTCACTAGCACAAATGTCT
1 TCGGGACTTAACCCGGAAATAGTAACTCGCACAAATGTCT
* *
69068286 TCGGGACTTAACCCGGATATAGTAACTCGCACAAATGCCT
1 TCGGGACTTAACCCGGAAATAGTAACTCGCACAAATGTCT
* * * *
69068326 TCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAACCCGGAAATAGTAACTCGCACAAATGTCT
* * *
69068366 TCGGGACTT-AGCCTGAAATTAATAACTCGCAC-AAT-TCCT
1 TCGGGACTTAACCCGGAAA-TAGTAACTCGCACAAATGT-CT
* * * *
69068405 TCGGGACTTAGCCCGGAAATAATCACTAGCACAAATGTCT
1 TCGGGACTTAACCCGGAAATAGTAACTCGCACAAATGTCT
69068445 TCGGGACTTAACCC
1 TCGGGACTTAACCC
69068459 CGTTAGCATC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
39 30 0.21
40 115 0.79
41 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
TCGGGACTTAACCCGGAAATAGTAACTCGCACAAATGTCT
Found at i:69068447 original size:79 final size:80
Alignment explanation
Indices: 69068246--69068458 Score: 277
Period size: 80 Copynumber: 2.7 Consensus size: 80
69068236 CACTAGGCCG
* * * * *
69068246 TCGGGTCTTAGCCCGGATATGGTCACTAGCACAAATGTCTTCGGGACTTAACCCGGATATAGTAA
1 TCGGGACTTAGCCCGGAAATAGTCACTAGCACAAATGTCTTCGGGACTTAACCCGAATATAATAA
69068311 CTCGCACAAATGCCT
66 CTCGCACAAATGCCT
* * * * * * *
69068326 TCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCTGAA-ATTAATA
1 TCGGGACTTAGCCCGGAAATAGTCACTAGCACAAATGTCTTCGGGACTTAACCCGAATA-TAATA
*
69068390 ACTCGCAC-AATTCCT
65 ACTCGCACAAATGCCT
*
69068405 TCGGGACTTAGCCCGGAAATAATCACTAGCACAAATGTCTTCGGGACTTAACCC
1 TCGGGACTTAGCCCGGAAATAGTCACTAGCACAAATGTCTTCGGGACTTAACCC
69068459 CGTTAGCATC
Statistics
Matches: 111, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 53 0.48
80 58 0.52
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
TCGGGACTTAGCCCGGAAATAGTCACTAGCACAAATGTCTTCGGGACTTAACCCGAATATAATAA
CTCGCACAAATGCCT
Found at i:69076464 original size:40 final size:40
Alignment explanation
Indices: 69076409--69076618 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
69076399 CACTAGGCCG
* * * * *
69076409 TCGGGTCTTAGCCCGGATATGGTCACTAGCACAAATGTCT
1 TCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATGTCT
* * *
69076449 TCGGGACTTAACCCGGATATAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATGTCT
* * *
69076489 TCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATGTCT
*
69076529 TCGGGACTTAGCCC-GAAATTAATAACTCGCACAAAT-TCCT
1 TCGGGACTTAGCCCGGAAA-TAGTAACTCGCACAAATGT-CT
* * *
69076569 TCGGGACTTAGCCCGGAAATAATCACTAGCACAAATGTCT
1 TCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATGTCT
69076609 TCGGGACTTA
1 TCGGGACTTA
69076619 ACCCCGTTAG
Statistics
Matches: 151, Mismatches: 15, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 143 0.95
41 5 0.03
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATGTCT
Found at i:69081127 original size:17 final size:17
Alignment explanation
Indices: 69081105--69081144 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
69081095 GTTGCAAGGT
*
69081105 AGAAGAAA-AGGAGATGG
1 AGAAGAAACAAGAGA-GG
69081122 AGAAGAAACAAGAGAGG
1 AGAAGAAACAAGAGAGG
69081139 AGAAGA
1 AGAAGA
69081145 GCGCGTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.57, C:0.03, G:0.38, T:0.03
Consensus pattern (17 bp):
AGAAGAAACAAGAGAGG
Found at i:69086136 original size:44 final size:45
Alignment explanation
Indices: 69086069--69086181 Score: 122
Period size: 45 Copynumber: 2.5 Consensus size: 45
69086059 AAAACAAACT
* * * *
69086069 TTATCTCCCT-AAAGTTGCAGTGGAGTAGGTTGAAG-TTACAAGTC
1 TTATCTCCCTGAAA-TTGCAGTGGAGCAGGCTGAAGATGACAAATC
* *
69086113 TTATCTCCTTGAAATTGCGGTGGAGCAGGCTGAAGATGACAAATC
1 TTATCTCCCTGAAATTGCAGTGGAGCAGGCTGAAGATGACAAATC
* * *
69086158 TTATTTCCCTGAAGTTGCAATGGA
1 TTATCTCCCTGAAATTGCAGTGGA
69086182 ACAGATTGAA
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
44 27 0.48
45 29 0.52
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (45 bp):
TTATCTCCCTGAAATTGCAGTGGAGCAGGCTGAAGATGACAAATC
Found at i:69088023 original size:18 final size:18
Alignment explanation
Indices: 69087981--69088029 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
69087971 ACCTTCATTC
69087981 TTTTATTACTATTGTTGT
1 TTTTATTACTATTGTTGT
** * *
69087999 TGCTATTTCTCTTGTTGT
1 TTTTATTACTATTGTTGT
*
69088017 TTTTATTATTATT
1 TTTTATTACTATT
69088030 TATATTATTG
Statistics
Matches: 22, Mismatches: 9, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.14, C:0.08, G:0.10, T:0.67
Consensus pattern (18 bp):
TTTTATTACTATTGTTGT
Found at i:69088121 original size:23 final size:23
Alignment explanation
Indices: 69088093--69088150 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
69088083 ATTATTTTCC
*
69088093 ATTATTGTTATTATCAATATACT
1 ATTATTATTATTATCAATATACT
* * * *
69088116 ATTATTATTCTTATTAATGTATT
1 ATTATTATTATTATCAATATACT
69088139 ATTATTATTATT
1 ATTATTATTATT
69088151 TTCTACTTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (23 bp):
ATTATTATTATTATCAATATACT
Found at i:69088200 original size:3 final size:3
Alignment explanation
Indices: 69088019--69088182 Score: 99
Period size: 3 Copynumber: 54.7 Consensus size: 3
69088009 CTTGTTGTTT
* * *
69088019 TTA TTA TTA TT- TATA TTA TTG TTA GTA TTA TTA TTTA TTA GT- TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * * *
69088064 TTA TTA TTA TTA TT- TTG TCA TTA TT- TTCCA TTA TTG TTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT--A TTA TTA TTA TTA TTA
* * * *
69088109 ATA -TA CTA TTA TTA TTC TTA TTAA TGTA TTA TTA TTA TTA TTT TCTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A T-TA TTA TTA TTA TTA TTA T-TA
* *
69088156 CT- TTA TTA TTA TTA -TA TTA TTA CTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
69088183 GCTATCATCA
Statistics
Matches: 124, Mismatches: 23, Indels: 28
0.71 0.13 0.16
Matches are distributed among these distances:
2 11 0.09
3 101 0.81
4 9 0.07
5 3 0.02
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:69088751 original size:24 final size:24
Alignment explanation
Indices: 69088724--69088779 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
69088714 TATTAATGAT
*
69088724 TTTAAATTGACTAATATCATTTAC
1 TTTAAATCGACTAATATCATTTAC
*
69088748 TTTAAATCGATTAATATCATTTAC
1 TTTAAATCGACTAATATCATTTAC
69088772 TTTAAATC
1 TTTAAATC
69088780 ATTTTCCATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.38, C:0.12, G:0.04, T:0.46
Consensus pattern (24 bp):
TTTAAATCGACTAATATCATTTAC
Found at i:69090642 original size:46 final size:46
Alignment explanation
Indices: 69090575--69090747 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
69090565 TGTAACCCGC
*
69090575 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
* * *
69090621 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTCGCAT
* *
69090671 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTCGCAT
* *
69090714 CCATAGGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
69090748 GGATGCTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 1 0.01
46 58 0.55
47 26 0.25
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
Found at i:69090694 original size:93 final size:93
Alignment explanation
Indices: 69090582--69090753 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
69090572 CGCCCATAAG
*
69090582 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
69090646 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
69090675 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69090740 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69090754 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69092969 original size:12 final size:12
Alignment explanation
Indices: 69092945--69092992 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
69092935 TGTCCTAAAA
*
69092945 TAAAATTATATT
1 TAAATTTATATT
*
69092957 TAAATTTAAATT
1 TAAATTTATATT
69092969 TAAA-TTATATT
1 TAAATTTATATT
*
69092980 TATATTTATATT
1 TAAATTTATATT
69092992 T
1 T
69092993 TATTAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
11 9 0.29
12 22 0.71
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TAAATTTATATT
Found at i:69092973 original size:23 final size:23
Alignment explanation
Indices: 69092947--69092992 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
69092937 TCCTAAAATA
69092947 AAATTATATTTAAATTTAAATTT
1 AAATTATATTTAAATTTAAATTT
* *
69092970 AAATTATATTTATATTTATATTT
1 AAATTATATTTAAATTTAAATTT
69092993 TATTAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
AAATTATATTTAAATTTAAATTT
Found at i:69111626 original size:12 final size:12
Alignment explanation
Indices: 69111609--69111634 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69111599 GAAATACGGC
69111609 TTTAGCGGCGTT
1 TTTAGCGGCGTT
69111621 TTTAGCGGCGTT
1 TTTAGCGGCGTT
69111633 TT
1 TT
69111635 ATAAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:69111772 original size:41 final size:40
Alignment explanation
Indices: 69111670--69111927 Score: 320
Period size: 40 Copynumber: 6.4 Consensus size: 40
69111660 CATTAGCGTT
* *
69111670 GTTTTTGGTAAAGCGCCA-CTAAAAACAGAGTAATAGCGGC
1 GTTTTTGGCAAAGCG-CAGCTAAAAACAGAGCAATAGCGGC
* *
69111710 GTTTTTGGCAAAGCGCCGCTAAAAACATAGCAATAGCGGC
1 GTTTTTGGCAAAGCGCAGCTAAAAACAGAGCAATAGCGGC
* * * *
69111750 GTTTTTTGGCAAAGCGTAGCTAAAACCAGAGCAATCGTGGC
1 G-TTTTTGGCAAAGCGCAGCTAAAAACAGAGCAATAGCGGC
*
69111791 GTTTTTGGCAAAGCGCAGCTAAAAAACAAAGCAATAGCGGC
1 GTTTTTGGCAAAGCGCAGCT-AAAAACAGAGCAATAGCGGC
* * *
69111832 GTTTTTGGCAAAGTGCCGCTAAAAATAGAGCAATAGCGGC
1 GTTTTTGGCAAAGCGCAGCTAAAAACAGAGCAATAGCGGC
* * * *
69111872 TTTTTTGGCGAAGCGCTGCTAAAAAAAGAGCAATAGCGGC
1 GTTTTTGGCAAAGCGCAGCTAAAAACAGAGCAATAGCGGC
* *
69111912 GTTTTTAGTAAAGCGC
1 GTTTTTGGCAAAGCGC
69111928 CGAGCGCCGC
Statistics
Matches: 187, Mismatches: 28, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 118 0.63
41 68 0.36
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (40 bp):
GTTTTTGGCAAAGCGCAGCTAAAAACAGAGCAATAGCGGC
Found at i:69111794 original size:81 final size:81
Alignment explanation
Indices: 69111671--69111917 Score: 320
Period size: 81 Copynumber: 3.0 Consensus size: 81
69111661 ATTAGCGTTG
* * *
69111671 TTTTTGGTAAAGCGCCA-CTAAAAACAGAGTAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAA
1 TTTTTGGCAAAGCG-CAGCTAAAAACAGAGCAATAGCGGCGTTTTTGGCAAAGCGCAGCTAAAAA
*
69111735 CATAGCAATAGCGGCGT
65 CAAAGCAATAGCGGCGT
* * * *
69111752 TTTTTGGCAAAGCGTAGCTAAAACCAGAGCAATCGTGGCGTTTTTGGCAAAGCGCAGCTAAAAAA
1 TTTTTGGCAAAGCGCAGCTAAAAACAGAGCAATAGCGGCGTTTTTGGCAAAGCGCAGCT-AAAAA
69111817 CAAAGCAATAGCGGCG-
65 CAAAGCAATAGCGGCGT
* * * * * *
69111833 TTTTTGGCAAAGTGCCGCTAAAAATAGAGCAATAGCGGCTTTTTTGGCGAAGCGCTGCTAAAAA-
1 TTTTTGGCAAAGCGCAGCTAAAAACAGAGCAATAGCGGCGTTTTTGGCAAAGCGCAGCTAAAAAC
69111897 AAGAGCAATAGCGGCGT
66 AA-AGCAATAGCGGCGT
69111914 TTTT
1 TTTT
69111918 AGTAAAGCGC
Statistics
Matches: 144, Mismatches: 18, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
79 2 0.01
80 19 0.13
81 103 0.72
82 20 0.14
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (81 bp):
TTTTTGGCAAAGCGCAGCTAAAAACAGAGCAATAGCGGCGTTTTTGGCAAAGCGCAGCTAAAAAC
AAAGCAATAGCGGCGT
Found at i:69112093 original size:46 final size:46
Alignment explanation
Indices: 69111987--69112111 Score: 151
Period size: 48 Copynumber: 2.7 Consensus size: 46
69111977 CTAAAAGTCA
* * * * *
69111987 TATAACCCCTAAAACCTTAAACCCCAAAAAAATCATAGACACTAGTC
1 TATAAACCCTAAAACCCTAAA-CCCAAAAAAACCATAAACACTAATC
*
69112034 TATATAACTCCTAAAACCCTAAACCCAAAAAAACCTTAAACACTAATC
1 TATA-AAC-CCTAAAACCCTAAACCCAAAAAAACCATAAACACTAATC
* *
69112082 TATAATCCCTAAAACCCTAAACCCCAAAAA
1 TATAAACCCTAAAACCCTAAACCCAAAAAA
69112112 CATCATATGG
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 22 0.32
47 6 0.09
48 27 0.40
49 13 0.19
ACGTcount: A:0.49, C:0.30, G:0.02, T:0.19
Consensus pattern (46 bp):
TATAAACCCTAAAACCCTAAACCCAAAAAAACCATAAACACTAATC
Found at i:69116432 original size:19 final size:21
Alignment explanation
Indices: 69116404--69116451 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
69116394 TTATTATTTA
69116404 TTTTAGTTTTGATTATAA-AT
1 TTTTAGTTTTGATTATAATAT
* *
69116424 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTATAATAT
69116444 TTTTAGTT
1 TTTTAGTT
69116452 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTATAATAT
Found at i:69116433 original size:20 final size:20
Alignment explanation
Indices: 69116392--69116451 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
69116382 TTAATCTAAT
*
69116392 TTTTATTAT-TTA-TTTTAG
1 TTTTATTATAATATTTTTAG
*
69116410 TTTTGATTATAA-ATTTTTAT
1 TTTT-ATTATAATATTTTTAG
*
69116430 TTTTATTTTAATATTTTTAG
1 TTTTATTATAATATTTTTAG
69116450 TT
1 TT
69116452 AAAATTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
18 4 0.12
19 12 0.35
20 18 0.53
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (20 bp):
TTTTATTATAATATTTTTAG
Found at i:69132630 original size:48 final size:48
Alignment explanation
Indices: 69132574--69132690 Score: 189
Period size: 48 Copynumber: 2.4 Consensus size: 48
69132564 CATTAGGGAA
* *
69132574 TACATTGATTTGGCTTTGGGCCATGATATAGGCACTTTGGGTGTGAGT
1 TACATTGATTTGGCTTTGGGCCATGATATAGACACTTCGGGTGTGAGT
* *
69132622 TACATTGATTTGGCTTCGAGCCATGATATAGACACTTCGGGTGTGAGT
1 TACATTGATTTGGCTTTGGGCCATGATATAGACACTTCGGGTGTGAGT
*
69132670 TATATTGATTTGGCTTTGGGC
1 TACATTGATTTGGCTTTGGGC
69132691 TCAAAACATA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 62 1.00
ACGTcount: A:0.20, C:0.14, G:0.29, T:0.38
Consensus pattern (48 bp):
TACATTGATTTGGCTTTGGGCCATGATATAGACACTTCGGGTGTGAGT
Found at i:69144722 original size:48 final size:48
Alignment explanation
Indices: 69144666--69144856 Score: 226
Period size: 48 Copynumber: 4.0 Consensus size: 48
69144656 CACTAGGGAA
69144666 TACATTGATTTGGCTTCGAGCCATGATATAGGCACTTCGGGTGCGAGT
1 TACATTGATTTGGCTTCGAGCCATGATATAGGCACTTCGGGTGCGAGT
* **
69144714 TACATTGATTTGGCGTT-GAGCCATGATATAGGCACTTCGGATATGAGT
1 TACATTGATTTGGC-TTCGAGCCATGATATAGGCACTTCGGGTGCGAGT
* * * **
69144762 TACATTAATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGTAAGCT
1 TACATTGATTTGGCTTCGAGCCATGATATAGGCACTTCGGGTGCGAG-T
** * *
69144811 T-CATTGATTTGG-TTTTAGGCCATGATATTGGCACTTAGGGTGCGAG
1 TACATTGATTTGGCTTCGA-GCCATGATATAGGCACTTCGGGTGCGAG
69144857 ACTCCGGAGT
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
47 4 0.03
48 114 0.93
49 4 0.03
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (48 bp):
TACATTGATTTGGCTTCGAGCCATGATATAGGCACTTCGGGTGCGAGT
Found at i:69144833 original size:96 final size:96
Alignment explanation
Indices: 69144666--69144846 Score: 258
Period size: 96 Copynumber: 1.9 Consensus size: 96
69144656 CACTAGGGAA
* *
69144666 TACATTGATTTGGCTTCGAGCCATGATATAGGCACTTCGGGTGCGAGTTACATTGATTTGGCGTT
1 TACATTAATTTGGCTTCGAGCCATGATATAGGCACTTCGGGTGCAAGTTACATTGATTTGGCGTT
69144731 GAGCCATGATATAGGCACTTCGGATATGAGT
66 GAGCCATGATATAGGCACTTCGGATATGAGT
* * * *
69144762 TACATTAATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGTAAGCTT-CATTGATTTGG-TT
1 TACATTAATTTGGCTTCGAGCCATGATATAGGCACTTCGGGTGCAAG-TTACATTGATTTGGCGT
* *
69144825 TTAGGCCATGATATTGGCACTT
65 TGA-GCCATGATATAGGCACTT
69144847 AGGGTGCGAG
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
95 3 0.04
96 70 0.93
97 2 0.03
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.35
Consensus pattern (96 bp):
TACATTAATTTGGCTTCGAGCCATGATATAGGCACTTCGGGTGCAAGTTACATTGATTTGGCGTT
GAGCCATGATATAGGCACTTCGGATATGAGT
Found at i:69146769 original size:29 final size:29
Alignment explanation
Indices: 69146705--69146770 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
69146695 AAACTGTCCA
**
69146705 GTGCCACAAGGTTATGTGGTAGACCGTGT
1 GTGCCACAAGGCCATGTGGTAGACCGTGT
** *
69146734 GCACCACAAGGCCATGTGGTAGACTGTGT
1 GTGCCACAAGGCCATGTGGTAGACCGTGT
69146763 GTGCCACA
1 GTGCCACA
69146771 CAATTGTATG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (29 bp):
GTGCCACAAGGCCATGTGGTAGACCGTGT
Found at i:69146784 original size:17 final size:17
Alignment explanation
Indices: 69146762--69146799 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
69146752 GTAGACTGTG
69146762 TGTGCCACACAATTGTA
1 TGTGCCACACAATTGTA
*
69146779 TGTGCCACACAATTGTG
1 TGTGCCACACAATTGTA
69146796 TGTG
1 TGTG
69146800 TTTTTGAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (17 bp):
TGTGCCACACAATTGTA
Found at i:69153802 original size:15 final size:15
Alignment explanation
Indices: 69153767--69153822 Score: 51
Period size: 15 Copynumber: 3.8 Consensus size: 15
69153757 ATAGGGGTAG
* *
69153767 GATATGATTTGATAT
1 GATATGATATGATAA
69153782 GATATGATATGATAA
1 GATATGATATGATAA
* * * *
69153797 GCTATGCTATGTTCA
1 GATATGATATGATAA
69153812 -ATATGATATGA
1 GATATGATATGA
69153823 CATGTCGGAA
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
14 8 0.25
15 24 0.75
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.39
Consensus pattern (15 bp):
GATATGATATGATAA
Done.