Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 21 of 343
Found at i:7225431 original size:18 final size:19
Alignment explanation
Indices: 7225388--7225453 Score: 57
Period size: 18 Copynumber: 3.6 Consensus size: 19
7225378 TATGAAAATT
*
7225388 CTATAAAATTTATAAAAAG
1 CTATAAAATTTATAAAAAC
*
7225407 C-ATTAAAA-TTATATAAAC
1 CTA-TAAAATTTATAAAAAC
* * *
7225425 CTATAAAAATTAAAAAAAT
1 CTATAAAATTTATAAAAAC
7225444 C-ATAAAATTT
1 CTATAAAATTT
7225454 TAACTAGTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
18 23 0.61
19 15 0.39
ACGTcount: A:0.59, C:0.08, G:0.02, T:0.32
Consensus pattern (19 bp):
CTATAAAATTTATAAAAAC
Found at i:7225433 original size:19 final size:19
Alignment explanation
Indices: 7225388--7225441 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
7225378 TATGAAAATT
* *
7225388 CTATAAAATTTATAAAAAG
1 CTATAAAAATTATAAAAAC
* *
7225407 C-ATTAAAATTATATAAAC
1 CTATAAAAATTATAAAAAC
7225425 CTATAAAAATTA-AAAAA
1 CTATAAAAATTATAAAAA
7225442 ATCATAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
18 18 0.64
19 10 0.36
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (19 bp):
CTATAAAAATTATAAAAAC
Found at i:7225916 original size:9 final size:9
Alignment explanation
Indices: 7225902--7225958 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
7225892 TTTAAAAAAG
7225902 AATTTTAAT
1 AATTTTAAT
7225911 AATTTT--T
1 AATTTTAAT
7225918 AATTTTAA-
1 AATTTTAAT
7225926 ATATTTTAAAT
1 A-ATTTT-AAT
*
7225937 AAATTTTATT
1 -AATTTTAAT
7225947 AA-TTTAAT
1 AATTTTAAT
7225955 AATT
1 AATT
7225959 GATTAAAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
7 7 0.18
8 8 0.21
9 14 0.36
10 4 0.10
11 5 0.13
12 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
AATTTTAAT
Found at i:7226021 original size:19 final size:20
Alignment explanation
Indices: 7225999--7226046 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
7225989 ATAAGTGTTT
7225999 ATAATTTTTTAT-AATTCTA
1 ATAATTTTTTATAAATTCTA
* * *
7226018 ATAAGTTTATATAAATTTTA
1 ATAATTTTTTATAAATTCTA
7226038 AT-ATTTTTT
1 ATAATTTTTT
7226047 TGAAAAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (20 bp):
ATAATTTTTTATAAATTCTA
Found at i:7231219 original size:20 final size:20
Alignment explanation
Indices: 7231190--7231232 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
7231180 TTTTTTATGC
7231190 TTTTTATAAAATCTTA-TAAT
1 TTTTTAT-AAATCTTATTAAT
* *
7231210 TTTTTGTAAATTTTATTAAT
1 TTTTTATAAATCTTATTAAT
7231230 TTT
1 TTT
7231233 CAATTTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTTTATAAATCTTATTAAT
Found at i:7231928 original size:30 final size:30
Alignment explanation
Indices: 7231893--7231965 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
7231883 ATTAAGAAAA
* *
7231893 ATAAAATTATACTTTGA-CTCTTTAAAAATG
1 ATAAAATTATAATTTAATC-CTTTAAAAATG
* *
7231923 ATAAAATTTTAATTTAATCCTTTAAAAATT
1 ATAAAATTATAATTTAATCCTTTAAAAATG
7231953 ATAAAGA-TATAAT
1 ATAAA-ATTATAAT
7231966 CAAAATTACA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
30 34 0.94
31 2 0.06
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (30 bp):
ATAAAATTATAATTTAATCCTTTAAAAATG
Found at i:7233327 original size:23 final size:24
Alignment explanation
Indices: 7233287--7233337 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
7233277 TTTTTTTTAT
*
7233287 TTTTTATTTTCATAATTTATATAA
1 TTTTTAATTTCATAATTTATATAA
* *
7233311 TTTTTAATTTCAT-ATTTTTATTA
1 TTTTTAATTTCATAATTTATATAA
7233334 TTTT
1 TTTT
7233338 GTATTTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTTTAATTTCATAATTTATATAA
Found at i:7240811 original size:43 final size:44
Alignment explanation
Indices: 7240733--7240816 Score: 100
Period size: 43 Copynumber: 1.9 Consensus size: 44
7240723 TATGTAAAAT
* * *
7240733 AAAATATGTGATAATTATACATTTAAAAATTTTATAATTTAACA
1 AAAATATGTAATAATTACACATTTAAAAATATTATAATTTAACA
* *
7240777 AAAAT-TGTAATAATTACATATTT-AAAATAATTATACTTTA
1 AAAATATGTAATAATTACACATTTAAAAAT-ATTATAATTTA
7240817 GTTTATAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
42 5 0.15
43 24 0.71
44 5 0.15
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.42
Consensus pattern (44 bp):
AAAATATGTAATAATTACACATTTAAAAATATTATAATTTAACA
Found at i:7244300 original size:49 final size:47
Alignment explanation
Indices: 7244191--7244313 Score: 156
Period size: 49 Copynumber: 2.6 Consensus size: 47
7244181 AGATGTCGAC
* * *
7244191 GCCATGTCCCAGACATGGTCTTACACTGGCTAACACATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGACTAACACATCAAAGCCAAT
* * * *
7244239 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAAGCCAAT
1 GCCATGTCCCAGACAGGTCTTACACTGAC--TAACACATCAAAGCCAAT
7244288 GCCATGTCCCAGACAGGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
7244314 AGCTTGTAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
47 13 0.20
48 15 0.23
49 38 0.58
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (47 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTAACACATCAAAGCCAAT
Found at i:7244361 original size:48 final size:46
Alignment explanation
Indices: 7244235--7244504 Score: 219
Period size: 48 Copynumber: 5.7 Consensus size: 46
7244225 ACATCAAAGT
* * *
7244235 CGATGCCATGTCCCAGACAGGTCTTACACT-GACTT-TCATATATCGAAGC
1 CGATG-CATGT-CCAGACATGTCTTACACTAG-CTTGT-A-ATCTCGAGGC
* *
7244284 CAATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTAATCTCGAGGCC
1 CGATG-CATGT-CCAGACATGTCTTACACTAGCTTGTAATCTCGAGG-C
* * ** * *
7244333 CGATGCATGTCCTAGAAATGTCTTACACTAGC-TCTCGTCTCAATGC
1 CGATGCATGTCC-AGACATGTCTTACACTAGCTTGTAATCTCGAGGC
*
7244379 CGATGCATGTTCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGC
1 CGATGCATG-TCCAGACATGTCTTACACTAGCTTGTA-ATCTCGAGGC
* * * *
7244427 CGATGCATGTCCAAGACATGTCTTACACTGGCTCTCATAA--T-GTGGT
1 CGATGCATGTCC-AGACATGTCTTACACTAGCT-T-GTAATCTCGAGGC
7244473 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGT-CCAGACATGTCTTACACTAGC
7244505 ACACATATCA
Statistics
Matches: 188, Mismatches: 22, Indels: 25
0.80 0.09 0.11
Matches are distributed among these distances:
46 58 0.31
47 21 0.11
48 65 0.35
49 40 0.21
50 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCAGACATGTCTTACACTAGCTTGTAATCTCGAGGC
Found at i:7244400 original size:46 final size:47
Alignment explanation
Indices: 7244290--7244504 Score: 188
Period size: 46 Copynumber: 4.6 Consensus size: 47
7244280 AAGCCAATGC
* * * * *
7244290 CATGTCCCAGACAGGTCTTACACTAGCTTGTAATCTCGAGGCCCGATG
1 CATGTTCCAGACATGTCTTACACTAGCTTCTCATCTCAAGG-CCGATG
* * *
7244338 CATG-TCCTAGAAATGTCTTACACTAGC-TCTCGTCTCAATGCCGATG
1 CATGTTCC-AGACATGTCTTACACTAGCTTCTCATCTCAAGGCCGATG
* * * *
7244384 CATGTTCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATG
1 CATGTTCCAGACATGTCTTACACTAGCTTCT-CATCTCAAGGCCGATG
* * ** *
7244432 CATG-TCCAAGACATGTCTTACACTGGC-TCTCATAAT-GTGGTCGATG
1 CATGTTCC-AGACATGTCTTACACTAGCTTCTCAT-CTCAAGGCCGATG
*
7244478 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTTCCAGACATGTCTTACACTAGC
7244505 ACACATATCA
Statistics
Matches: 138, Mismatches: 22, Indels: 16
0.78 0.12 0.09
Matches are distributed among these distances:
46 59 0.43
47 23 0.17
48 56 0.41
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (47 bp):
CATGTTCCAGACATGTCTTACACTAGCTTCTCATCTCAAGGCCGATG
Found at i:7244402 original size:94 final size:93
Alignment explanation
Indices: 7244290--7244504 Score: 292
Period size: 94 Copynumber: 2.3 Consensus size: 93
7244280 AAGCCAATGC
* *
7244290 CATGTCCCAGACAGGTCTTACACTAGCTTGTA-ATCTCGAGGCCCGATGCATGTCCTAGAAATGT
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGG-CCGATGCATGTCCAAGAAATGT
*
7244354 CTTACACTAGCTCTCGTCTCAA-T-GCCGATG
65 CTTACACTAGCTCTC--AT-AAGTGGCCGATG
* * *
7244384 CATGTTCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATGCATGTCCAAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCAAGAAATGTC
* *
7244449 TTACACTGGCTCTCATAATGTGGTCGATG
66 TTACACTAGCTCTCATAA-GTGGCCGATG
7244478 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
7244505 ACACATATCA
Statistics
Matches: 107, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
91 2 0.02
92 1 0.01
93 1 0.01
94 94 0.88
95 9 0.08
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCAAGAAATGTC
TTACACTAGCTCTCATAAGTGGCCGATG
Found at i:7244513 original size:94 final size:93
Alignment explanation
Indices: 7244193--7244513 Score: 258
Period size: 94 Copynumber: 3.4 Consensus size: 93
7244183 ATGTCGACGC
* * * * * * *
7244193 CATGTCCCAGACATGGTCTTACACTGGC-TA-ACA-CATCAAAGTCGATGCCATGTCCCAGACAG
1 CATGTCCCAGACAT-GTCTTACACTAGCATACATATC-TCGAGGCCGATG-CATGTCCAAGACAT
* * * *
7244255 GTCTTACACTGACTTTCATATATCGAAGCCAATG
63 GTCTTACACTGGCTCTCATA-AT-G-TGCCGATG
* * ** * *
7244289 CCATGTCCCAGACAGGTCTTACACTAGCTTGTA-ATCTCGAGGCCCGATGCATGTCCTAGAAATG
1 -CATGTCCCAGACATGTCTTACACTAGCATACATATCTCGAGG-CCGATGCATGTCCAAGACATG
* *
7244353 TCTTACACTAGCTCTCGTCTCAA--TGCCGATG
64 TCTTACACTGGCTCTC--AT-AATGTGCCGATG
* * * **
7244384 CATGTTCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATGCATGTCCAAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCATACATATCTCGAGGCCGATGCATGTCCAAGACATGTC
*
7244449 TTACACTGGCTCTCATAATGTGGTCGATG
66 TTACACTGGCTCTCATAATGT-GCCGATG
*
7244478 CATGTCCCAGACATGTCTTACACTAGCACACATATC
1 CATGTCCCAGACATGTCTTACACTAGCATACATATC
7244514 ACCCAATGTC
Statistics
Matches: 184, Mismatches: 29, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
91 2 0.01
92 1 0.01
93 1 0.01
94 99 0.54
95 15 0.08
96 12 0.07
97 44 0.24
98 7 0.04
99 2 0.01
100 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCATACATATCTCGAGGCCGATGCATGTCCAAGACATGTC
TTACACTGGCTCTCATAATGTGCCGATG
Found at i:7245715 original size:14 final size:14
Alignment explanation
Indices: 7245680--7245706 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7245670 CTCACAATCA
7245680 CTAAAATTAATTCG
1 CTAAAATTAATTCG
7245694 CTAAAATTAATTC
1 CTAAAATTAATTC
7245707 ATCAAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.37
Consensus pattern (14 bp):
CTAAAATTAATTCG
Found at i:7250174 original size:23 final size:24
Alignment explanation
Indices: 7250132--7250181 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
7250122 AACACTGACG
* *
7250132 TGAGTTAATCTTTTGCTTGTTTAAT
1 TGAGTTAA-CTTTTGATTGTTAAAT
7250157 TGAGTTAA-TTTTGATTGTTAAAT
1 TGAGTTAACTTTTGATTGTTAAAT
7250180 TG
1 TG
7250182 TCTTCCTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 15 0.65
25 8 0.35
ACGTcount: A:0.24, C:0.04, G:0.18, T:0.54
Consensus pattern (24 bp):
TGAGTTAACTTTTGATTGTTAAAT
Found at i:7250395 original size:17 final size:17
Alignment explanation
Indices: 7250373--7250405 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7250363 CTTTACTATA
7250373 TTACAATTTGACCCGTT
1 TTACAATTTGACCCGTT
7250390 TTACAATTTGACCCGT
1 TTACAATTTGACCCGT
7250406 ATACTTACGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.39
Consensus pattern (17 bp):
TTACAATTTGACCCGTT
Found at i:7252476 original size:17 final size:17
Alignment explanation
Indices: 7252438--7252470 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
7252428 AGAGAAAAAC
7252438 CAAAAACCAAAAATAAA
1 CAAAAACCAAAAATAAA
7252455 CAAAAA-CAAAAATAAA
1 CAAAAACCAAAAATAAA
7252471 TTAAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.79, C:0.15, G:0.00, T:0.06
Consensus pattern (17 bp):
CAAAAACCAAAAATAAA
Found at i:7254274 original size:24 final size:22
Alignment explanation
Indices: 7254247--7254296 Score: 55
Period size: 24 Copynumber: 2.2 Consensus size: 22
7254237 TTTGTAAATC
7254247 TATTATGTGTATTATATCTTCTCA
1 TATTATGTGTATTAT-TCTT-TCA
* * *
7254271 TATTTTTTTTATTATTCTTTCA
1 TATTATGTGTATTATTCTTTCA
7254293 TATT
1 TATT
7254297 TTATATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 7 0.30
23 4 0.17
24 12 0.52
ACGTcount: A:0.22, C:0.10, G:0.04, T:0.64
Consensus pattern (22 bp):
TATTATGTGTATTATTCTTTCA
Found at i:7254296 original size:22 final size:23
Alignment explanation
Indices: 7254256--7254308 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
7254246 CTATTATGTG
* *
7254256 TATTATATCTTCTCATATTTTTTT
1 TATTAT-TCTTCTCATATTTTATA
7254280 TATTATTCTT-TCATATTTTATA
1 TATTATTCTTCTCATATTTTATA
7254302 TATTATT
1 TATTATT
7254309 TAAGTTATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 17 0.63
23 4 0.15
24 6 0.22
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (23 bp):
TATTATTCTTCTCATATTTTATA
Found at i:7254987 original size:16 final size:16
Alignment explanation
Indices: 7254966--7254998 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7254956 AATAAATCGT
7254966 ATTTTTGAAGGTATAA
1 ATTTTTGAAGGTATAA
7254982 ATTTTTGAAGGTATAA
1 ATTTTTGAAGGTATAA
7254998 A
1 A
7254999 GGATCGTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (16 bp):
ATTTTTGAAGGTATAA
Found at i:7256245 original size:41 final size:41
Alignment explanation
Indices: 7256180--7256257 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
7256170 GTGTCGGTCC
* *
7256180 TTATTGCGGACATGCATGCCCGATTCAAGTATAAAGTATCA
1 TTATTGAGGACATGCAAGCCCGATTCAAGTATAAAGTATCA
* * *
7256221 TTATTGAGTACATGCAAGCTCGATTCAAGTGTAAAGT
1 TTATTGAGGACATGCAAGCCCGATTCAAGTATAAAGT
7256258 GTCGTACCGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (41 bp):
TTATTGAGGACATGCAAGCCCGATTCAAGTATAAAGTATCA
Found at i:7257937 original size:26 final size:26
Alignment explanation
Indices: 7257908--7258166 Score: 192
Period size: 27 Copynumber: 10.3 Consensus size: 26
7257898 AAAGATAGAT
7257908 AATTTAAATGAAATGAGAAAAAAATA
1 AATTTAAATGAAATGAGAAAAAAATA
*
7257934 AA--T---TGAAATGA-ACAAAAAT-
1 AATTTAAATGAAATGAGAAAAAAATA
* * *
7257953 AATATAAATGAACTGAGAAAAAATTTA
1 AATTTAAATGAAATGAGAAAAAA-ATA
* *
7257980 AATTTACAA-GGAA--AG--AAAGATA
1 AATTTA-AATGAAATGAGAAAAAAATA
**
7258002 AATTTAAATGAAATGAGGAAAAATTTA
1 AATTTAAATGAAATGA-GAAAAAAATA
*
7258029 AATTTAAAAGAAATGAGAAAAAAATTTA
1 AATTTAAATGAAATGAGAAAAAAA--TA
*
7258057 AA-TT-AA--AAATGA-AAGAAAGATA
1 AATTTAAATGAAATGAGAA-AAAAATA
* *
7258079 AATTTAAATGAAATGAGGAAAAAATCT
1 AATTTAAATGAAATGAGAAAAAAAT-A
*
7258106 AATTTAAATGAAATGAGAAAAAAATT
1 AATTTAAATGAAATGAGAAAAAAATA
** *
7258132 AATTTGTATGAAATGAGAAAAAATTA
1 AATTTAAATGAAATGAGAAAAAAATA
7258158 AATTTAAAT
1 AATTTAAAT
7258167 AAAAAATAAT
Statistics
Matches: 183, Mismatches: 26, Indels: 48
0.71 0.10 0.19
Matches are distributed among these distances:
19 2 0.01
20 7 0.04
21 11 0.06
22 15 0.08
23 7 0.04
24 21 0.11
25 8 0.04
26 52 0.28
27 54 0.30
28 6 0.03
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.25
Consensus pattern (26 bp):
AATTTAAATGAAATGAGAAAAAAATA
Found at i:7257941 original size:21 final size:20
Alignment explanation
Indices: 7257912--7257975 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
7257902 ATAGATAATT
7257912 TAAATGAAATGAGAAAAAAA
1 TAAATGAAATGAGAAAAAAA
*
7257932 TAAATTGAAATGAACAAAAATAATA
1 TAAA-TGAAATG-A-GAAAA-AA-A
*
7257957 TAAATGAACTGAGAAAAAA
1 TAAATGAAATGAGAAAAAA
7257976 TTTAAATTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
20 4 0.11
21 9 0.25
22 5 0.14
23 5 0.14
24 8 0.22
25 5 0.14
ACGTcount: A:0.66, C:0.03, G:0.12, T:0.19
Consensus pattern (20 bp):
TAAATGAAATGAGAAAAAAA
Found at i:7258005 original size:28 final size:27
Alignment explanation
Indices: 7257971--7258166 Score: 95
Period size: 28 Copynumber: 7.7 Consensus size: 27
7257961 TGAACTGAGA
*
7257971 AAAAATTTAAATTTACAAGGAAAGAAAG
1 AAAAATTTAAATTTA-AATGAAAGAAAG
* *
7257999 ATAAATTTAAA-TGAAATG--AG---G
1 AAAAATTTAAATTTAAATGAAAGAAAG
*
7258020 AAAAATTTAAATTTAAAAGAAATGAGAA-
1 AAAAATTTAAATTTAAATGAAA-GA-AAG
*
7258048 AAAAATTTAAATTAAAAATGAAAGAAAG
1 AAAAATTTAAATT-TAAATGAAAGAAAG
* * *
7258076 ATAAATTTAAA-TGAAATG--AG-GA-
1 AAAAATTTAAATTTAAATGAAAGAAAG
*
7258098 AAAAATCT-AATTTAAATGAAATGAGAA-
1 AAAAATTTAAATTTAAATGAAA-GA-AAG
**
7258125 AAAAA-TT-AATTTGTATGAAATG--AG
1 AAAAATTTAAATTTAAATGAAA-GAAAG
*
7258149 AAAAAATTAAATTTAAAT
1 AAAAATTTAAATTTAAAT
7258167 AAAAAATAAT
Statistics
Matches: 129, Mismatches: 20, Indels: 40
0.68 0.11 0.21
Matches are distributed among these distances:
21 13 0.10
22 17 0.13
23 2 0.02
24 11 0.09
25 4 0.03
26 29 0.22
27 11 0.09
28 35 0.27
29 7 0.05
ACGTcount: A:0.60, C:0.01, G:0.13, T:0.27
Consensus pattern (27 bp):
AAAAATTTAAATTTAAATGAAAGAAAG
Found at i:7258024 original size:49 final size:46
Alignment explanation
Indices: 7257872--7258133 Score: 179
Period size: 49 Copynumber: 5.3 Consensus size: 46
7257862 GATAAAGGGT
* * * *
7257872 ATGAGAAAAAAATGAAAATTACATGGAAAGATAGATAATTTAAATGAA
1 ATGAGAAAAAAATTAAATTTA-AAGGAAAGA-AAATAATTTAAATGAA
* * *
7257920 ATGAGAAAAAAA-TAAATTGAAATGAACA-AAAATAATATAAATGAA
1 ATGAGAAAAAAATTAAATTTAAAGGAA-AGAAAATAATTTAAATGAA
* *
7257965 CTGAGAAAAAATTTAAATTTACAAGGAAAGAAAGATAAATTTAAATGAA
1 ATGAGAAAAAAATTAAATTTA-AAGGAAAGAAA-AT-AATTTAAATGAA
* * * * *
7258014 ATGAGGAAAAATTTAAATTTAAAAGAAATGAGAAAAAAATTTAAATTAAAA
1 ATGAGAAAAAAATTAAATTT-AAAGGAA--AGAAAATAATTTAAA-T-GAA
** *
7258065 ATGAAAGAAAGATAAATTTAAATGAAATGAGGAAA-AAATCTAATTTAAATGAA
1 ATG--AGAAA-A-AAA-TTAAATTTAA--AGGAAAGAAA-ATAATTTAAATGAA
7258118 ATGAGAAAAAAATTAA
1 ATGAGAAAAAAATTAA
7258134 TTTGTATGAA
Statistics
Matches: 170, Mismatches: 25, Indels: 38
0.73 0.11 0.16
Matches are distributed among these distances:
45 24 0.14
46 13 0.08
47 14 0.08
48 18 0.11
49 45 0.26
50 4 0.02
51 15 0.09
53 9 0.05
54 5 0.03
55 13 0.08
56 6 0.04
57 4 0.02
ACGTcount: A:0.61, C:0.02, G:0.14, T:0.23
Consensus pattern (46 bp):
ATGAGAAAAAAATTAAATTTAAAGGAAAGAAAATAATTTAAATGAA
Found at i:7258060 original size:77 final size:77
Alignment explanation
Indices: 7257952--7258131 Score: 274
Period size: 77 Copynumber: 2.4 Consensus size: 77
7257942 TGAACAAAAA
* * * *
7257952 TAATATAAATGAACTGAG-AAAAAATTTAAATTTACAAGGAAAGAAAGATAAATTTAAATGAAAT
1 TAATTTAAATGAAATGAGAAAAAAATTTAAATTAAAAAGGAAAGAAAGATAAATTTAAATGAAAT
*
7258016 GAGG-AAAAATT
66 GAGGAAAAAATC
* *
7258027 TAAATTTAAAAGAAATGAGAAAAAAATTTAAATTAAAAATGAAAGAAAGATAAATTTAAATGAAA
1 T-AATTTAAATGAAATGAGAAAAAAATTTAAATTAAAAAGGAAAGAAAGATAAATTTAAATGAAA
7258092 TGAGGAAAAAATC
65 TGAGGAAAAAATC
7258105 TAATTTAAATGAAATGAGAAAAAAATT
1 TAATTTAAATGAAATGAGAAAAAAATT
7258132 AATTTGTATG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
75 1 0.01
76 14 0.15
77 72 0.77
78 7 0.07
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.25
Consensus pattern (77 bp):
TAATTTAAATGAAATGAGAAAAAAATTTAAATTAAAAAGGAAAGAAAGATAAATTTAAATGAAAT
GAGGAAAAAATC
Found at i:7258166 original size:21 final size:20
Alignment explanation
Indices: 7258109--7258256 Score: 81
Period size: 21 Copynumber: 7.0 Consensus size: 20
7258099 AAAATCTAAT
7258109 TTAAATGAAATGAGAAAAAAA
1 TTAAATGAAATGAG-AAAAAA
7258130 TTAATTTGTATGAAATGAGAAAAAA
1 TTAA-----ATGAAATGAGAAAAAA
* *
7258155 TTAAATTTAAAT-AAAAAATAA
1 TTAAA-TGAAATGAGAAAA-AA
7258176 TATAAATGAAATGAGAAATAAA
1 T-TAAATGAAATGAGAAA-AAA
* * *
7258198 AT-AA--AATTGAAAAAAAA
1 TTAAATGAAATGAGAAAAAA
7258215 TCTAAATGAAATGA-AATAAAA
1 T-TAAATGAAATGAGAA-AAAA
* *
7258236 TAGAAATGAAATGACAAAAAA
1 T-TAAATGAAATGAGAAAAAA
7258257 AAAGTGAGGT
Statistics
Matches: 100, Mismatches: 11, Indels: 32
0.70 0.08 0.22
Matches are distributed among these distances:
17 3 0.03
18 9 0.09
19 2 0.02
20 10 0.10
21 43 0.43
22 12 0.12
23 1 0.01
25 10 0.10
26 10 0.10
ACGTcount: A:0.64, C:0.01, G:0.11, T:0.24
Consensus pattern (20 bp):
TTAAATGAAATGAGAAAAAA
Found at i:7258209 original size:16 final size:16
Alignment explanation
Indices: 7258190--7258247 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
7258180 AATGAAATGA
7258190 GAAATAAAATAAAATT
1 GAAATAAAATAAAATT
* *
7258206 GAAAAAAAATCTAAA-T
1 GAAATAAAAT-AAAATT
* *
7258222 GAAATGAAATAAAATA
1 GAAATAAAATAAAATT
*
7258238 GAAATGAAAT
1 GAAATAAAAT
7258248 GACAAAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 3 0.09
16 28 0.82
17 3 0.09
ACGTcount: A:0.67, C:0.02, G:0.10, T:0.21
Consensus pattern (16 bp):
GAAATAAAATAAAATT
Found at i:7258469 original size:16 final size:16
Alignment explanation
Indices: 7258450--7258491 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
7258440 TAACAAATTT
7258450 AAAATTTAAAT-TGACA
1 AAAATTTAAATATGA-A
7258466 AAAA-TTAAATATGAA
1 AAAATTTAAATATGAA
7258481 AAAATTTAAAT
1 AAAATTTAAAT
7258492 GACCTCGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (16 bp):
AAAATTTAAATATGAA
Found at i:7258473 original size:15 final size:15
Alignment explanation
Indices: 7258450--7258491 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
7258440 TAACAAATTT
*
7258450 AAAATTTAAAT-TGA
1 AAAAATTAAATATGA
7258464 CAAAAATTAAATATGA
1 -AAAAATTAAATATGA
7258480 AAAAATTTAAAT
1 AAAAA-TTAAAT
7258492 GACCTCGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 15 0.62
16 9 0.38
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (15 bp):
AAAAATTAAATATGA
Found at i:7258815 original size:17 final size:17
Alignment explanation
Indices: 7258790--7258828 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
7258780 GAAAGATAGA
* *
7258790 AAATTTAAATGAAATGT
1 AAATGTAAATGAAATGC
7258807 AAATGTAAATGAAATGC
1 AAATGTAAATGAAATGC
7258824 AAATG
1 AAATG
7258829 AAACTAGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.54, C:0.03, G:0.15, T:0.28
Consensus pattern (17 bp):
AAATGTAAATGAAATGC
Found at i:7261040 original size:3 final size:3
Alignment explanation
Indices: 7261032--7261488 Score: 120
Period size: 3 Copynumber: 153.0 Consensus size: 3
7261022 AGATAGTAAG
* * * * *
7261032 TAA TAA TAA AAA TAA TAA TAA TAG TAA TAA -AA -AA TGA TAA TAG TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
7261078 TAT TAG TAA TAA TAA TAA TTA TAGGA -AA TAA TAG TACA TTAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA--A TAA TAA TAA TA-A -TAA TAA TAA
** * * **
7261126 TAA TATA TGT TAA TATA TAA AAA TAGGA -AA TGA TAA T-A TGG TAA -AA
1 TAA TA-A TAA TAA TA-A TAA TAA TA--A TAA TAA TAA TAA TAA TAA TAA
* * * * * * *
7261172 -AA TAA TAA TAA TAA TAA CAA AAA TAG TAA CAA TAG TATG TGA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
** * * * * * *
7261216 TAA TAA TTG TAA AAA AAA TAA TAG TAA TAA TTA TAT TGA TAA TAGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* * * *
7261262 TAA -AA TAA TAC TAA TAA TAA TAG TAG TAA -AA AAA TAA -AA -AA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * * *
7261305 TAA AAA TAA TAA TAA TAG TAG TAA AAA TGA CAA TAA -AA TAA -GA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * ** *
7261351 TAA TAA TGA TAA AAA TAA AAA TAA AAA TAG TAA TAA TGG CAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
7261399 TAA TACCA TAA TAA -AA GAA AAA GAAA TAA TAA CATG TAAA TAA TAA
1 TAA TA--A TAA TAA TAA TAA TAA -TAA TAA TAA TA-A T-AA TAA TAA
* * * * *
7261445 TAA CAA TAA T-A TAT TTA TAA TAA TAA TAA TAG TAA AAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7261489 AATTAACTAA
Statistics
Matches: 323, Mismatches: 102, Indels: 58
0.67 0.21 0.12
Matches are distributed among these distances:
2 30 0.09
3 268 0.83
4 17 0.05
5 8 0.02
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:7261420 original size:55 final size:55
Alignment explanation
Indices: 7261306--7261430 Score: 126
Period size: 55 Copynumber: 2.3 Consensus size: 55
7261296 TAAAAAATAT
* * * ** * *
7261306 AAAAATAATAATAATAGTAGTAAAAATGACAATAAAATAAGATGATAATAATGAT
1 AAAAATAAAAATAAAAATAGTAAAAATGACAATAAAATAAGACCATAATAATAAG
* * *
7261361 AAAAATAAAAATAAAAATAGTAATAATGGCAATAATAATAATACCATAATAA-AAG
1 AAAAATAAAAATAAAAATAGTAAAAATGACAATAA-AATAAGACCATAATAATAAG
*
7261416 AAAAAGAAATAATAA
1 AAAAATAAA-AATAA
7261431 CATGTAAATA
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
55 39 0.68
56 18 0.32
ACGTcount: A:0.66, C:0.03, G:0.09, T:0.22
Consensus pattern (55 bp):
AAAAATAAAAATAAAAATAGTAAAAATGACAATAAAATAAGACCATAATAATAAG
Found at i:7261452 original size:26 final size:26
Alignment explanation
Indices: 7261423--7261473 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7261413 AAGAAAAAGA
7261423 AATAATAACATGTA-AATAATAATAAC
1 AATAAT-ACATGTATAATAATAATAAC
* *
7261449 AATAATATATTTATAATAATAATAA
1 AATAATACATGTATAATAATAATAA
7261474 TAGTAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (26 bp):
AATAATACATGTATAATAATAATAAC
Found at i:7262112 original size:21 final size:21
Alignment explanation
Indices: 7262087--7262139 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
7262077 AAGGTACCCC
7262087 TTTTTAATAT-TTTTTGTATAT
1 TTTTTAATATATTTTTG-ATAT
7262108 TTTTTAATATATTTTTGATAT
1 TTTTTAATATATTTTTGATAT
* *
7262129 ATCTTAATATA
1 TTTTTAATATA
7262140 AGTATAGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 23 0.79
22 6 0.21
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTTTAATATATTTTTGATAT
Found at i:7262118 original size:12 final size:11
Alignment explanation
Indices: 7262087--7262130 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
7262077 AAGGTACCCC
7262087 TTTTTA-ATAT
1 TTTTTATATAT
*
7262097 TTTTTGTATAT
1 TTTTTATATAT
7262108 TTTTTAATATAT
1 TTTTT-ATATAT
*
7262120 TTTTGATATAT
1 TTTTTATATAT
7262131 CTTAATATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 5 0.17
11 15 0.52
12 9 0.31
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (11 bp):
TTTTTATATAT
Found at i:7262817 original size:22 final size:22
Alignment explanation
Indices: 7262759--7262817 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
7262749 GAATGGTATC
7262759 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
* *
7262781 TACAAAATCATATCTCCTGAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
7262804 TACATATCAAATCT
1 TACAAATCAAATCT
7262818 ACGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
22 12 0.39
23 14 0.45
24 5 0.16
ACGTcount: A:0.42, C:0.20, G:0.05, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:7267960 original size:22 final size:22
Alignment explanation
Indices: 7267902--7267960 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
7267892 GAATGGTATC
7267902 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
7267924 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
7267947 TACATATCAAATCT
1 TACAAATCAAATCT
7267961 ACGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:7268731 original size:88 final size:88
Alignment explanation
Indices: 7268577--7268860 Score: 412
Period size: 88 Copynumber: 3.2 Consensus size: 88
7268567 TAAGATCTGT
* * * * * **
7268577 GATTTATAGCTTCGATCTAATCGGCTGAAACTTCAATGAGATACGAATGGTGGCTTCGAGGTTCT
1 GATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATGGTGGCTTCGAGCCTCT
7268642 TCAGTGCCATTTCAGGGAGAAGA
66 TCAGTGCCATTTCAGGGAGAAGA
* * * *
7268665 GATTTGTTGCTTCGATCTACTCCGTTGGAACTTCAAGGAGATACTAATGGTGGCTTTGAGCCTCT
1 GATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATGGTGGCTTCGAGCCTCT
7268730 TCAGTGCCATTTCAGGGAGAATG-
66 TCAGTGCCATTTCAGGGAGAA-GA
* *
7268753 GATTTATAGCTTTGATCTACTCCGCTGGAACTTCAAGGAGATACGAATGGTGGCTTCGAGCCTCT
1 GATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATGGTGGCTTCGAGCCTCT
*
7268818 CCAGTGCCATTTCAGGGAG-A-A
66 TCAGTGCCATTTCAGGGAGAAGA
7268839 GATTTGTAGCTTCGATCTACTC
1 GATTTGTAGCTTCGATCTACTC
7268861 TGCTACTGCT
Statistics
Matches: 174, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
86 20 0.11
87 1 0.01
88 152 0.87
89 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (88 bp):
GATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATGGTGGCTTCGAGCCTCT
TCAGTGCCATTTCAGGGAGAAGA
Found at i:7269098 original size:87 final size:87
Alignment explanation
Indices: 7268863--7269620 Score: 997
Period size: 87 Copynumber: 8.7 Consensus size: 87
7268853 ATCTACTCTG
* * * * * *
7268863 CTACTGCTTAGGGAGATAGGAT-GGTAAATTTAGCCTGTTACCCTACTACTTAGAGGG-TTAAGG
1 CTACTACTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG-GGGTTTAAGG
7268926 CCCATCG-CTATCGATCTGTTTCC
65 CCCATCGCCT-TCGATCTGTTTCC
* *
7268949 CTACTACTTAGGGTGATAAGAT-GGTAAATTCAGCCTGTTACCTTACTGCTTAGGGGTTTAAGGC
1 CTACTACTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
* * *
7269013 TCTTTGCCTTCGATCTGTTTCC
66 CCATCGCCTTCGATCTGTTTCC
* * *
7269035 CTACTGCTTAGGGTGATAAGATCTGTAAATTTAGCCTGTTACCCTATTGCTTAGGGGTTTAAGGC
1 CTACTACTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
* *
7269100 TCATTGCCTTCGATCTGTTTCC
66 CCATCGCCTTCGATCTGTTTCC
* *
7269122 CTACTACTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCTTACTACTTAGGGGTTTAAGGC
1 CTACTACTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
*
7269187 CTATCGCCTTCGATCTGTTTCC
66 CCATCGCCTTCGATCTGTTTCC
* * * * *
7269209 CTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTATTACTTAGGGGTTTAAGGC
1 CTACTACTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
* *
7269274 CCATCGCCTTCAATTTGTTTCC
66 CCATCGCCTTCGATCTGTTTCC
* * * *
7269296 CTACTACTTAGGGGGTTAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGAC
1 CTACTACTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
7269361 CCATCGCCTTCGATCTGTTTCC
66 CCATCGCCTTCGATCTGTTTCC
* * * * *
7269383 CTACTATTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACTCTACTGCTTAAGGGTTTAAGGC
1 CTACTACTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
* *
7269448 CCATCGCTTTCGATCTATTTCC
66 CCATCGCCTTCGATCTGTTTCC
* * * * *
7269470 CTACT-CTTAGGTTGATAAGATCGGTAAATTTAGCATGTTACCCTACTGCTTAGGGGTTTAAGGT
1 CTACTACTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
* * * **
7269534 CTATCACTTTCGATCTACTTCC
66 CCATCGCCTTCGATCTGTTTCC
* * *
7269556 CTACTGCTTAGGGTGATAAGATCTATAAATTCAGCCTGTTACCCTATTGCTTAGGGAG-TTAAGG
1 CTACTACTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG-GTTTAAGG
7269620 C
65 C
7269621 TTATGAATTC
Statistics
Matches: 602, Mismatches: 65, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
85 3 0.00
86 164 0.27
87 434 0.72
88 1 0.00
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (87 bp):
CTACTACTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
CCATCGCCTTCGATCTGTTTCC
Found at i:7269170 original size:43 final size:43
Alignment explanation
Indices: 7268941--7269611 Score: 179
Period size: 43 Copynumber: 15.5 Consensus size: 43
7268931 CGCTATCGAT
* *
7268941 CTGTTTCCCTACTACTTAGGGTGATAAGAT-GGTAAATTCAGC
1 CTGTTACCCTACTACTTAGGGTGATAAGATCTGTAAATTCAGC
* * * * * *** *
7268983 CTGTTACCTTACTGCTTAGGG-GTTTAAGGCTCTTTGCCTTC-GAT
1 CTGTTACCCTACTACTTAGGGTG-ATAA-GATCTGTAAATTCAG-C
* * *
7269027 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTACTTAGGGTGATAAGATCTGTAAATTCAGC
* * * * *** *
7269070 CTGTTACCCTATTGCTTAGGG-GTTTAAGGCTCAT-TGCCTTC-GAT
1 CTGTTACCCTACTACTTAGGGTG-ATAA-GATC-TGTAAATTCAG-C
*
7269114 CTGTTTCCCTACTACTTAGGGTGATAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTACTTAGGGTGATAAGATCTGTAAATTCAGC
* * ** * *** *
7269157 CTGTTACCTTACTACTTAGGG-GTTTAAGGCCTATCGCCTTC-GAT
1 CTGTTACCCTACTACTTAGGGTG-ATAAGATCTGT-AAATTCAG-C
* * * *
7269201 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTACTTAGGGTGATAAGATCTGTAAATTCAGC
* * ** ** *** **
7269244 CTGTTACCCTATTACTTAGGG-GTTTAAGGCCCATCGCCTTCAAT
1 CTGTTACCCTACTACTTAGGGTG-ATAAGATCTGT-AAATTCAGC
* * * * *
7269288 TTGTTTCCCTACTACTTAGGGGGTTAAGATCTATAAATTCAGC
1 CTGTTACCCTACTACTTAGGGTGATAAGATCTGTAAATTCAGC
* * * ** *** *
7269331 CTGTTACCCTACTGCTTAGGG-GTTTAAGACCCATCGCCTTC-GAT
1 CTGTTACCCTACTACTTAGGGTG-ATAAGATCTGT-AAATTCAG-C
* * * *
7269375 CTGTTTCCCTACTATTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTACTTAGGGTGATAAGATCTGTAAATTCAGC
* * * ** ** *** *
7269418 CTGTTACTCTACTGCTTAAGGGT-TTAAGGCCCATCGCTTTC-GAT
1 CTGTTACCCTACTACTT-AGGGTGATAAGATCTGT-AAATTCAG-C
* * * * *
7269462 CTATTTCCCTACT-CTTAGGTTGATAAGATCGGTAAATTTAGC
1 CTGTTACCCTACTACTTAGGGTGATAAGATCTGTAAATTCAGC
* * * * * ** *
7269504 ATGTTACCCTACTGCTTAGGG-GTTTAAGGTCTATCACTTTC-GAT
1 CTGTTACCCTACTACTTAGGGTG-ATAAGATCTGT-AAATTCAG-C
* * *
7269548 CTACTT-CCCTACTGCTTAGGGTGATAAGATCTATAAATTCAGC
1 CT-GTTACCCTACTACTTAGGGTGATAAGATCTGTAAATTCAGC
* *
7269591 CTGTTACCCTATTGCTTAGGG
1 CTGTTACCCTACTACTTAGGG
7269612 AGTTAAGGCT
Statistics
Matches: 441, Mismatches: 149, Indels: 77
0.66 0.22 0.12
Matches are distributed among these distances:
41 1 0.00
42 45 0.10
43 195 0.44
44 191 0.43
45 9 0.02
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.36
Consensus pattern (43 bp):
CTGTTACCCTACTACTTAGGGTGATAAGATCTGTAAATTCAGC
Found at i:7269581 original size:44 final size:43
Alignment explanation
Indices: 7269454--7269583 Score: 113
Period size: 44 Copynumber: 3.0 Consensus size: 43
7269444 AGGCCCATCG
* **
7269454 CTTTCGATCTATTTCCCTACT-CTTAGGTTGATAAGATCGGTAA
1 CTTTCGATCTA-TTCCCTACTGCTTAGGGTGATAAGATCTATAA
* * * * * * *
7269497 ATTTAGCATGT-TACCCTACTGCTTAGGG-GTTTAAGGTCTATCA
1 CTTTCG-ATCTATTCCCTACTGCTTAGGGTG-ATAAGATCTATAA
7269540 CTTTCGATCTACTTCCCTACTGCTTAGGGTGATAAGATCTATAA
1 CTTTCGATCTA-TTCCCTACTGCTTAGGGTGATAAGATCTATAA
7269584 ATTCAGCCTG
Statistics
Matches: 64, Mismatches: 17, Indels: 11
0.70 0.18 0.12
Matches are distributed among these distances:
42 12 0.19
43 22 0.34
44 29 0.45
45 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.38
Consensus pattern (43 bp):
CTTTCGATCTATTCCCTACTGCTTAGGGTGATAAGATCTATAA
Found at i:7269791 original size:66 final size:66
Alignment explanation
Indices: 7269685--7269813 Score: 231
Period size: 66 Copynumber: 2.0 Consensus size: 66
7269675 ATGCTTATGC
*
7269685 CAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAATGTG
1 CAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAATGTG
7269750 T
66 T
* *
7269751 CAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAATTAGATGTGTTATGAATG
1 CAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAATG
7269814 ATATATGAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (66 bp):
CAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAATGTG
T
Found at i:7270836 original size:4 final size:4
Alignment explanation
Indices: 7270827--7270855 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7270817 AGCAAACGTG
7270827 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
7270856 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:7278057 original size:4 final size:4
Alignment explanation
Indices: 7278048--7278080 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
7278038 AGCAAACGTG
7278048 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
7278081 TAGAAAAGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:7278907 original size:47 final size:47
Alignment explanation
Indices: 7278843--7278953 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
7278833 GACATTGAGT
* *
7278843 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTATTC
* * *
7278890 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTATTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
7278937 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
7278954 CTTATCCCGG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 51 0.93
48 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
Found at i:7282560 original size:25 final size:25
Alignment explanation
Indices: 7282532--7282596 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
7282522 TGGTTAATGT
*
7282532 AATGCATGTGATGAAATACAATGGA
1 AATGCATGTGATGAAATACAATGCA
*
7282557 AATGCATGTGATGAAATGCAATGCA
1 AATGCATGTGATGAAATACAATGCA
*
7282582 AATGCATGGGATGAA
1 AATGCATGTGATGAA
7282597 TGCAAAAAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.42, C:0.09, G:0.26, T:0.23
Consensus pattern (25 bp):
AATGCATGTGATGAAATACAATGCA
Found at i:7282574 original size:14 final size:14
Alignment explanation
Indices: 7282532--7282576 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
7282522 TGGTTAATGT
7282532 AATGCATGTGATGA
1 AATGCATGTGATGA
* *
7282546 AATACA-ATG--GA
1 AATGCATGTGATGA
7282557 AATGCATGTGATGA
1 AATGCATGTGATGA
7282571 AATGCA
1 AATGCA
7282577 ATGCAAATGC
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
11 7 0.29
12 2 0.08
13 2 0.08
14 13 0.54
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (14 bp):
AATGCATGTGATGA
Found at i:7286116 original size:28 final size:28
Alignment explanation
Indices: 7286084--7286137 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
7286074 AGAAACTCTA
*
7286084 ATCTACAATCCATTACAAAAAAACTCCC
1 ATCTACAATCCACTACAAAAAAACTCCC
* *
7286112 ATCTATAATCCACTATAAAAAAACTC
1 ATCTACAATCCACTACAAAAAAACTC
7286138 ATTTGATGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (28 bp):
ATCTACAATCCACTACAAAAAAACTCCC
Found at i:7286458 original size:44 final size:44
Alignment explanation
Indices: 7286366--7286460 Score: 127
Period size: 44 Copynumber: 2.2 Consensus size: 44
7286356 CACCAAATTT
* * *
7286366 TTTTTTACTAGTGTAGTGCCGGCCATTAGAAGGCCAAAACCATT
1 TTTTTTACTACTCTAGTGCCGGCCATTAGAAGGCCAAAACCATA
* * * *
7286410 TTTTTTACTACTCTGGTGCCGGCCATTAGAAGGCTAGAACCGTA
1 TTTTTTACTACTCTAGTGCCGGCCATTAGAAGGCCAAAACCATA
7286454 TTTTTTA
1 TTTTTTA
7286461 AAAAAATCCT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (44 bp):
TTTTTTACTACTCTAGTGCCGGCCATTAGAAGGCCAAAACCATA
Found at i:7289950 original size:25 final size:25
Alignment explanation
Indices: 7289922--7289979 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
7289912 AATTTGATAT
*
7289922 TTCAGCAGAGAAGGCATTGTTGAGA
1 TTCAGCAAAGAAGGCATTGTTGAGA
7289947 TTCAGCAAAGAAGGCATTGTTGAGA
1 TTCAGCAAAGAAGGCATTGTTGAGA
7289972 TTC-GCAAA
1 TTCAGCAAA
7289980 CTCAATAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 5 0.16
25 27 0.84
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (25 bp):
TTCAGCAAAGAAGGCATTGTTGAGA
Found at i:7290695 original size:20 final size:22
Alignment explanation
Indices: 7290665--7290706 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
7290655 AAAATAATAA
7290665 AATAGTTATATACTAT-TTTTT
1 AATAGTTATATACTATGTTTTT
*
7290686 AATA-TTATATATTATGTTTTT
1 AATAGTTATATACTATGTTTTT
7290707 TATTCATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (22 bp):
AATAGTTATATACTATGTTTTT
Found at i:7290796 original size:24 final size:23
Alignment explanation
Indices: 7290729--7290796 Score: 59
Period size: 24 Copynumber: 2.9 Consensus size: 23
7290719 TTTTAATAAT
* *
7290729 AATTATA-TTAAGAATGTTATTA
1 AATTATATTTAATAATATTATTA
* *
7290751 AATTATATATT-ATTATCTTTATTA
1 AATTATAT-TTAATAAT-ATTATTA
7290775 AATTATATTTAATAATAATTAT
1 AATTATATTTAATAAT-ATTAT
7290797 ATTAAAGTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
22 7 0.19
23 5 0.14
24 24 0.67
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (23 bp):
AATTATATTTAATAATATTATTA
Found at i:7290859 original size:59 final size:62
Alignment explanation
Indices: 7290684--7290852 Score: 199
Period size: 63 Copynumber: 2.7 Consensus size: 62
7290674 ATACTATTTT
* *
7290684 TTAATATTATATATTATGT-TTTTTATT-CATTCATATTTTAATAATAATTATATT-AAGAATGT
1 TTAA-ATTATATATTAT-TATCTTTATTAAATT-ATA-TTTAATAATAATTATATTAAAGAATG-
7290746 TA
61 TA
*
7290748 TTAAATTATATATTATTATCTTTATTAAATTATATTTAATAATAATTATATTAAAGTATG-A
1 TTAAATTATATATTATTATCTTTATTAAATTATATTTAATAATAATTATATTAAAGAATGTA
*
7290809 TTAAATTATTTATT-TT-T-TATTATTAAATTATATTTAATAATAAT
1 TTAAATTATATATTATTATCT-TTATTAAATTATATTTAATAATAAT
7290853 CCTATTATAA
Statistics
Matches: 97, Mismatches: 4, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
58 1 0.01
59 26 0.27
60 2 0.02
61 14 0.14
62 19 0.20
63 28 0.29
64 7 0.07
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (62 bp):
TTAAATTATATATTATTATCTTTATTAAATTATATTTAATAATAATTATATTAAAGAATGTA
Found at i:7291053 original size:16 final size:16
Alignment explanation
Indices: 7291029--7291083 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
7291019 TGAATTACTG
*
7291029 ATTATAGCTCTATTTC
1 ATTACAGCTCTATTTC
*
7291045 ATTACAGCTTTA-TTC
1 ATTACAGCTCTATTTC
* *
7291060 AATTACAGCCCTATTCC
1 -ATTACAGCTCTATTTC
7291077 ATTACAG
1 ATTACAG
7291084 TGAACCAAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
15 3 0.09
16 27 0.84
17 2 0.06
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTTC
Found at i:7292145 original size:17 final size:17
Alignment explanation
Indices: 7292125--7292158 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7292115 AAATTTAGGT
7292125 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
7292142 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
7292159 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:7298216 original size:41 final size:41
Alignment explanation
Indices: 7298130--7298216 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 41
7298120 CAAATACATT
*
7298130 TAAAACAAATATTAAAACAAGAAACAAAAAAAAAAAAATAT
1 TAAAACAAATATTAAAACAAGAAACAAAAAAAAAAAAATAA
* * * * ** *
7298171 TAAAACAATTCTTAAAACAATACACAAATTAAAAAATATAA
1 TAAAACAAATATTAAAACAAGAAACAAAAAAAAAAAAATAA
7298212 TAAAA
1 TAAAA
7298217 ATTGATTATA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.70, C:0.09, G:0.01, T:0.20
Consensus pattern (41 bp):
TAAAACAAATATTAAAACAAGAAACAAAAAAAAAAAAATAA
Found at i:7298224 original size:23 final size:25
Alignment explanation
Indices: 7298198--7298256 Score: 59
Period size: 27 Copynumber: 2.3 Consensus size: 25
7298188 CAATACACAA
*
7298198 ATTAAAAAA-TATAATAAAAAT-TG
1 ATTAAAAAATTAAAATAAAAATATG
*
7298221 ATTATATTAAAATTAAAATATAAATATG
1 ATTA-A--AAAATTAAAATAAAAATATG
7298249 ATTAAAAA
1 ATTAAAAA
7298257 TAAAAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
23 4 0.14
24 1 0.03
25 3 0.10
26 4 0.14
27 11 0.38
28 6 0.21
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (25 bp):
ATTAAAAAATTAAAATAAAAATATG
Found at i:7298260 original size:23 final size:21
Alignment explanation
Indices: 7298226--7298268 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
7298216 AATTGATTAT
*
7298226 ATTAAAATTAAAATATAAATATG
1 ATTAAAAATAAAA-A-AAATATG
7298249 ATTAAAAATAAAAAAAATAT
1 ATTAAAAATAAAAAAAATAT
7298269 ATTTATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 1 0.05
23 12 0.63
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (21 bp):
ATTAAAAATAAAAAAAATATG
Found at i:7299955 original size:17 final size:14
Alignment explanation
Indices: 7299915--7299957 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
7299905 AATTATAATC
*
7299915 AATTAATTTAAAAA
1 AATTAAATTAAAAA
7299929 AATTAAATTAAAAA
1 AATTAAATTAAAAA
7299943 AGATATAAAATTAAA
1 A-AT-T-AAATTAAA
7299958 TGAAAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 14 0.56
15 2 0.08
16 1 0.04
17 8 0.32
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (14 bp):
AATTAAATTAAAAA
Found at i:7299976 original size:21 final size:22
Alignment explanation
Indices: 7299927--7299973 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
7299917 TTAATTTAAA
*
7299927 AAAATTAAATTAAAAAAGATAT
1 AAAATTAAATGAAAAAAGATAT
**
7299949 AAAATTAAATGAAAAATTATAT
1 AAAATTAAATGAAAAAAGATAT
7299971 AAA
1 AAA
7299974 TTATAAAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (22 bp):
AAAATTAAATGAAAAAAGATAT
Found at i:7300997 original size:2 final size:2
Alignment explanation
Indices: 7300990--7301023 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7300980 AAACTCTCCA
7300990 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7301024 CATATATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7325586 original size:33 final size:33
Alignment explanation
Indices: 7325546--7325630 Score: 93
Period size: 33 Copynumber: 2.6 Consensus size: 33
7325536 GGCAATATAT
* *
7325546 GTGTAAGACCATAGCTAGGTTATGGCATCC-TGA
1 GTGTAAGACCATAGCTAGGATATGGCA-CCACGA
* *
7325579 -TGATAAGACCATATCTGGGATATGGCACCACGA
1 GTG-TAAGACCATAGCTAGGATATGGCACCACGA
*
7325612 GTGTAAGACCATGGCTAGG
1 GTGTAAGACCATAGCTAGG
7325631 CCATGACAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
32 4 0.10
33 36 0.86
34 2 0.05
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (33 bp):
GTGTAAGACCATAGCTAGGATATGGCACCACGA
Found at i:7325735 original size:45 final size:45
Alignment explanation
Indices: 7325686--7325796 Score: 132
Period size: 45 Copynumber: 2.5 Consensus size: 45
7325676 ACCAGAAATA
* * * *
7325686 AGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTTAGACG
1 AGTAAGACCATAGTTGAAAGACGCTATGACATCACGATTCAAACG
* * * *
7325731 AGTAAGGCTATAGTTGAAAGACGCTATGACATCGCGATTCAAATG
1 AGTAAGACCATAGTTGAAAGACGCTATGACATCACGATTCAAACG
* *
7325776 TGTAAGACCATGGTTGAAAGA
1 AGTAAGACCATAGTTGAAAGA
7325797 TACCATGGCA
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (45 bp):
AGTAAGACCATAGTTGAAAGACGCTATGACATCACGATTCAAACG
Found at i:7325826 original size:46 final size:46
Alignment explanation
Indices: 7325771--7325936 Score: 298
Period size: 46 Copynumber: 3.6 Consensus size: 46
7325761 ATCGCGATTC
7325771 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
* *
7325817 AAATGTGTAAGATCATGGTTGAAAGATACCATGGAAACATGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
7325863 AAATGTGTAAGACCATGGTTGAAAGATA-CATTGGCAACATGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCA-TGGCAACATGATATG
7325909 AAATGTGTAAGACCATGGTTGAAAGATA
1 AAATGTGTAAGACCATGGTTGAAAGATA
7325937 GGGAATGGAT
Statistics
Matches: 115, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
45 2 0.02
46 113 0.98
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.25
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
Found at i:7326485 original size:46 final size:45
Alignment explanation
Indices: 7326435--7326611 Score: 205
Period size: 46 Copynumber: 3.9 Consensus size: 45
7326425 TGTCATAGCG
* * *
7326435 TCTTTCAACTATGGTCTTACTCATTTTCTGTCAGGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTTCTGTCACGTTG-CATGGTA
* * * *
7326481 TCTTTCAACCATGGTTTTATTCATTTCCCCGTCATGTTGCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTT-TCTGTCACGTTGCATGGTA
* *
7326527 TCTTTCAACCATAGTCTTATTCA-TTTCATGTCACGTTACCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTTC-TGTCACGTT-GCATGGTA
*
7326573 TCTTTTAACCATGGTCTTATTCA-TTTCATGTCACGTTGC
1 TCTTTCAACCATGGTCTTATTCATTTTC-TGTCACGTTGC
7326612 GTGTGTTTAG
Statistics
Matches: 113, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
44 1 0.01
45 10 0.09
46 93 0.82
47 9 0.08
ACGTcount: A:0.19, C:0.23, G:0.14, T:0.44
Consensus pattern (45 bp):
TCTTTCAACCATGGTCTTATTCATTTTCTGTCACGTTGCATGGTA
Found at i:7330410 original size:28 final size:26
Alignment explanation
Indices: 7330344--7330411 Score: 66
Period size: 28 Copynumber: 2.5 Consensus size: 26
7330334 AATGTGATAC
* *
7330344 TTGAACTTG-ACATTTTTTTTCTAAT
1 TTGAACTTGAACTTTTTTTTTCCAAT
* *
7330369 TTGAAACCTAAACTTTTTTTTATCCAAT
1 TTG-AACTTGAACTTTTTTTT-TCCAAT
7330397 TTGACACTTGAACTT
1 TTGA-ACTTGAACTT
7330412 AACACTTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
25 3 0.09
26 4 0.12
27 10 0.30
28 16 0.48
ACGTcount: A:0.28, C:0.16, G:0.07, T:0.49
Consensus pattern (26 bp):
TTGAACTTGAACTTTTTTTTTCCAAT
Found at i:7330446 original size:60 final size:61
Alignment explanation
Indices: 7330284--7330446 Score: 163
Period size: 60 Copynumber: 2.7 Consensus size: 61
7330274 ATTTGGTACA
* * * * *
7330284 TGAACTTGACACTTTTTCCTGACTTGGTACTTAAG-TTTTTTTTTGTGCCCAATGTGATACT
1 TGAACTTGACACTTTTTCCTGAATTGGAACCTAAGCTTTTTTTTTAT-CCCAATGTGACACT
* * * * *
7330345 TGAACTTGACATTTTTTTTCT-AATTTGAAACCTAAAC-TTTTTTTTAT-CCAATTTGACACT
1 TGAACTTGACA-CTTTTTCCTGAA-TTGGAACCTAAGCTTTTTTTTTATCCCAATGTGACACT
* *
7330405 TGAACTTAACACTTTTTCCTGAATTGGCACCTAAGCTTTTTT
1 TGAACTTGACACTTTTTCCTGAATTGGAACCTAAGCTTTTTT
7330447 AGTCTAATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
59 17 0.21
60 28 0.35
61 12 0.15
62 24 0.30
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.46
Consensus pattern (61 bp):
TGAACTTGACACTTTTTCCTGAATTGGAACCTAAGCTTTTTTTTTATCCCAATGTGACACT
Found at i:7331074 original size:28 final size:27
Alignment explanation
Indices: 7331015--7331076 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
7331005 ATTCACCAAG
* *
7331015 TTTAAGTACCAAACTGGACAAAAAAAA
1 TTTAAGTACCAAACTAGAAAAAAAAAA
* *
7331042 TTTAAGTACTAAATTAGAAAAAAAAAA
1 TTTAAGTACCAAACTAGAAAAAAAAAA
7331069 TGTTAAGT
1 T-TTAAGT
7331077 TCATGTACCA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 24 0.80
28 6 0.20
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (27 bp):
TTTAAGTACCAAACTAGAAAAAAAAAA
Found at i:7331165 original size:23 final size:23
Alignment explanation
Indices: 7331138--7331182 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7331128 AGTGTCAAAT
*
7331138 TTAGATACTAAATTAAAAAAAAA
1 TTAGATACCAAATTAAAAAAAAA
* *
7331161 TTAGATACCATATTAAGAAAAA
1 TTAGATACCAAATTAAAAAAAA
7331183 GTGGGGAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.27
Consensus pattern (23 bp):
TTAGATACCAAATTAAAAAAAAA
Found at i:7333591 original size:18 final size:19
Alignment explanation
Indices: 7333556--7333593 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
7333546 CCCGATTTTC
7333556 AAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
7333575 AAAAATTCCAAAT-TTTAT
1 AAAAATTCAAAATATTTAT
7333593 A
1 A
7333594 TTATTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:7334115 original size:12 final size:12
Alignment explanation
Indices: 7334085--7334123 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
7334075 ATGATAAAAT
* *
7334085 TTTCTTATTCTC
1 TTTCTTTTTTTC
7334097 TTTCTTTTTTTC
1 TTTCTTTTTTTC
7334109 TTTCTTTTTTTC
1 TTTCTTTTTTTC
7334121 TTT
1 TTT
7334124 TAAATTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTCTTTTTTTC
Found at i:7335772 original size:3 final size:3
Alignment explanation
Indices: 7335764--7335806 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
7335754 TCTATAAACA
7335764 AAT AAT AAT AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7335807 CTAAAATCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7340120 original size:25 final size:26
Alignment explanation
Indices: 7340066--7340120 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 26
7340056 GATGGGGATT
* * *
7340066 TATATGTTTTTTAATATTAATGTAAT
1 TATATGTTATTTAATATTAATATAAA
*
7340092 TATAT-TTATTTAATATTCATATAAA
1 TATATGTTATTTAATATTAATATAAA
7340117 TATA
1 TATA
7340121 AATATAAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (26 bp):
TATATGTTATTTAATATTAATATAAA
Found at i:7340579 original size:8 final size:8
Alignment explanation
Indices: 7340566--7340590 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7340556 CCTAAAGAAG
7340566 ATAAAACA
1 ATAAAACA
7340574 ATAAAACA
1 ATAAAACA
7340582 ATAAAACA
1 ATAAAACA
7340590 A
1 A
7340591 AAACAAACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (8 bp):
ATAAAACA
Found at i:7352812 original size:18 final size:18
Alignment explanation
Indices: 7352770--7352814 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
7352760 GAAAAATGAG
7352770 AATTTTT-AAAACACGAA
1 AATTTTTGAAAACACGAA
7352787 AA-TTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
7352804 AATTTTTGAAA
1 AATTTTTGAAA
7352815 CCTGATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.15
17 14 0.54
18 8 0.31
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:7352868 original size:17 final size:18
Alignment explanation
Indices: 7352835--7352868 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7352825 TTTTTTAGAA
*
7352835 AAACACGAAAAATTTTAG
1 AAACACGAAAAAGTTTAG
7352853 AAACACG-AAAAGTTTA
1 AAACACGAAAAAGTTTA
7352869 CAACACTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.21
Consensus pattern (18 bp):
AAACACGAAAAAGTTTAG
Found at i:7354403 original size:9 final size:9
Alignment explanation
Indices: 7354389--7354419 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
7354379 TCAAAATGAA
7354389 TTTTTAATT
1 TTTTTAATT
7354398 TTTTTAA-T
1 TTTTTAATT
7354406 TTTTTAATT
1 TTTTTAATT
7354415 TTTTT
1 TTTTT
7354420 TGAAATTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTAATT
Found at i:7354408 original size:8 final size:8
Alignment explanation
Indices: 7354389--7354418 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
7354379 TCAAAATGAA
7354389 TTTTTAATT
1 TTTTTAA-T
7354398 TTTTTAAT
1 TTTTTAAT
7354406 TTTTTAAT
1 TTTTTAAT
7354414 TTTTT
1 TTTTT
7354419 TTGAAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 14 0.67
9 7 0.33
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTAAT
Found at i:7354855 original size:54 final size:54
Alignment explanation
Indices: 7354670--7355165 Score: 732
Period size: 54 Copynumber: 9.0 Consensus size: 54
7354660 CATGTGAGCC
* *
7354670 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AA
*
7354725 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAG--A--AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
7354775 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
7354829 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
7354883 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG------AAATTAA
*
7354943 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAGAAATTAA
* *
7354999 AAGGCTCAACTCACATCTCGCAATATTAGTTGATTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
* *
7355053 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAAAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAGAAATTAA
*
7355109 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTATTGAAAAACAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AA
7355164 AA
1 AA
7355166 AACAGAAATT
Statistics
Matches: 406, Mismatches: 19, Indels: 32
0.89 0.04 0.07
Matches are distributed among these distances:
50 47 0.12
52 1 0.00
54 168 0.41
55 44 0.11
56 94 0.23
60 38 0.09
61 1 0.00
62 13 0.03
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
Found at i:7355053 original size:170 final size:164
Alignment explanation
Indices: 7354670--7355165 Score: 736
Period size: 170 Copynumber: 3.0 Consensus size: 164
7354660 CATGTGAGCC
* *
7354670 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAAGGCTCAA
1 AAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AAAAGGCTCAA
* *
7354734 CTCACCTCTCGCAATATGAGTTGATTTTT----AAAAAACAGA--AAAAGGCTCAACTCACCTCT
64 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAAAAAATTAAAAGGCTCAACTCACCTCT
7354793 CGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAA
129 CGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAA
* *
7354829 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAAAAGGCTCAACT
1 AAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
7354894 CACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAATTAAAAGGCTCAACTCACCT
66 CACCTCTCGCAATATGAGTTGATTTTTGAAAAA-A-AAA--AAAATTAAAAGGCTCAACTCACCT
7354959 CTCGCAATATGAGTTGGTTTTTTTGAAAAACAGAAATTAA
127 CTCGCAATATGAGTTGG--TTTTTGAAAAACAGAAATTAA
*
7354999 AAGGCTCAACTCACATCTCGCAATATTAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
1 AAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
* *** *
7355064 CACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAAAAATTAAAAGGCTCAACTCACCTCTCG
66 CACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAAAAAATTAAAAGGCTCAACTCACCTCTCG
* *
7355129 CAATATGAGTTGATTATTGAAAAACAGAAATTGAA
131 CAATATGAGTTGGTTTTTGAAAAACAGAAATT-AA
7355164 AA
1 AA
7355166 AACAGAAATT
Statistics
Matches: 308, Mismatches: 15, Indels: 22
0.89 0.04 0.06
Matches are distributed among these distances:
158 40 0.13
159 37 0.12
160 11 0.04
162 2 0.01
163 1 0.00
164 21 0.07
165 4 0.01
166 42 0.14
168 37 0.12
169 1 0.00
170 112 0.36
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29
Consensus pattern (164 bp):
AAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAAAAAATTAAAAGGCTCAACTCACCTCTCG
CAATATGAGTTGGTTTTTGAAAAACAGAAATTAA
Found at i:7355128 original size:110 final size:109
Alignment explanation
Indices: 7354670--7355165 Score: 754
Period size: 110 Copynumber: 4.5 Consensus size: 109
7354660 CATGTGAGCC
* *
7354670 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAAGGCTCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AAAAGGCTCAA
* *
7354734 CTCACCTCTCGCAATATGAGTT-GATTTTTAAAAAACAG--A--AA
64 CTCACCTCTCGCAATATGAGTTGGTTTTTTGAAAAACAGAAATTAA
*
7354775 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAAAAGGCTCAACT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
7354840 CACCTCTCGCAATATGAGTTGG-TTTTTGAAAAACAGAAATTAA
66 CACCTCTCGCAATATGAGTTGGTTTTTTGAAAAACAGAAATTAA
*
7354883 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAATTAAAAGGC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG------AAATTAAAAGGC
7354948 TCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAGAAATTAA
60 TCAACTCACCTCTCGCAATATGAGTTGG-TTTTTTGAAAAACAGAAATTAA
* *
7354999 AAGGCTCAACTCACATCTCGCAATATTAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
*
7355064 CACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAAAAATTAA
66 CACCTCTCGCAATATGAGTTGG-TTTTTTGAAAAACAGAAATTAA
*
7355109 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTATTGAAAAACAGAAATTGAAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AAAA
7355166 AACAGAAATT
Statistics
Matches: 363, Mismatches: 13, Indels: 24
0.91 0.03 0.06
Matches are distributed among these distances:
104 46 0.13
105 38 0.10
106 12 0.03
108 47 0.13
110 111 0.31
111 4 0.01
114 40 0.11
116 65 0.18
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29
Consensus pattern (109 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
CACCTCTCGCAATATGAGTTGGTTTTTTGAAAAACAGAAATTAA
Found at i:7355168 original size:15 final size:14
Alignment explanation
Indices: 7355144--7355194 Score: 84
Period size: 14 Copynumber: 3.6 Consensus size: 14
7355134 TGAGTTGATT
7355144 ATTGAAAAACAGAA
1 ATTGAAAAACAGAA
7355158 ATTGAAAAAACAGAA
1 ATTG-AAAAACAGAA
*
7355173 ATTGAAAAGCAGAA
1 ATTGAAAAACAGAA
7355187 ATTGAAAA
1 ATTGAAAA
7355195 TACCTCAGCG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
14 21 0.60
15 14 0.40
ACGTcount: A:0.63, C:0.06, G:0.16, T:0.16
Consensus pattern (14 bp):
ATTGAAAAACAGAA
Found at i:7355421 original size:85 final size:86
Alignment explanation
Indices: 7355164--7355513 Score: 372
Period size: 87 Copynumber: 4.0 Consensus size: 86
7355154 AGAAATTGAA
* * *
7355164 AAAACAGAAATT-GAAAAGCAGAAATTGAAAATACCTCAGC-GTGCCCTGAGGCTCAACTCACCT
1 AAAACAG-AATTAGAAAAACAGAAATTGAAAATACCTCAGCTGTGGCCTGAGACTCAACTCACCT
* *
7355227 CTTGCAATATGAGCTGATTTTTTTTTG
65 CTCGCAATATGAGTTGA-----TTTTG
* * * *
7355254 AAACACAGAAATTAAAAAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCCGAGACTCAACTCAC
1 AAA-ACAG-AATTAGAAAAACAGAAATTGAAAATACCTCAGC-TGTGGCCTGAGACTCAACTCAC
7355319 CTCTCGCAATATGAGTTGA-TTTG
63 CTCTCGCAATATGAGTTGATTTTG
* * *
7355342 AAAAGCAGAATTAGTAAAGCAGAAATTGAAAATACCTCAGC-GT-GCCATAAGACTCAACTCACC
1 AAAA-CAGAATTAGAAAAACAGAAATTGAAAATACCTCAGCTGTGGCC-TGAGACTCAACTCACC
*
7355405 TCTCGCAATATAAGTTGATTTTG
64 TCTCGCAATATGAGTTGATTTTG
* * * *
7355428 GAAACATGAATT-GAAAAATAAAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCAC
1 AAAACA-GAATTAGAAAAACAGAAATTGAAAATACCTCAGC-TGTG-GCCTGAGACTCAACTCAC
7355491 CTCTCGCAATATGAGTTGATTTT
63 CTCTCGCAATATGAGTTGATTTT
7355514 TTTGAAAAGC
Statistics
Matches: 223, Mismatches: 25, Indels: 27
0.81 0.09 0.10
Matches are distributed among these distances:
84 3 0.01
85 59 0.26
86 12 0.05
87 65 0.29
88 10 0.04
89 3 0.01
90 3 0.01
91 9 0.04
92 24 0.11
94 35 0.16
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (86 bp):
AAAACAGAATTAGAAAAACAGAAATTGAAAATACCTCAGCTGTGGCCTGAGACTCAACTCACCTC
TCGCAATATGAGTTGATTTTG
Found at i:7355723 original size:73 final size:74
Alignment explanation
Indices: 7355438--7355765 Score: 401
Period size: 73 Copynumber: 4.3 Consensus size: 74
7355428 GAAACATGAA
* * *
7355438 TTGAAAAATAAAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
7355502 TGAGTTGATTTTT
63 TGAGTTGA-TTTT
* * *
7355515 TTGAAAAGCAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7355580 GTTGA-TTT
66 GTTGATTTT
* * *
7355588 TTGAAAAGCATAAACGGAAATTGAAAATACCTCGGCGTGCCCTGAGGCTCAACTCACCTCTCGCA
1 TTG---A--A-AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
7355653 ATATGAGTTGA-TTT
60 ATATGAGTTGATTTT
**
7355667 TTGAAAAACAGAAATTGAAGTTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7355732 GTTGAATTTTTTT
66 GTTG-A---TTTT
*
7355745 TTGAAAGACAGAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
7355766 ACAGAAATTG
Statistics
Matches: 220, Mismatches: 19, Indels: 23
0.84 0.07 0.09
Matches are distributed among these distances:
73 65 0.30
74 4 0.02
75 36 0.16
76 2 0.01
77 26 0.12
78 22 0.10
79 65 0.30
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:7355764 original size:14 final size:14
Alignment explanation
Indices: 7355745--7355779 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
7355735 GAATTTTTTT
*
7355745 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
7355759 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
7355773 TTGAAAA
1 TTGAAAA
7355780 TACCTCAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:7355828 original size:94 final size:92
Alignment explanation
Indices: 7355667--7355942 Score: 372
Period size: 86 Copynumber: 3.1 Consensus size: 92
7355657 GAGTTGATTT
** **
7355667 TTGAAAAACAGAAATTGAAGTTACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATAT
7355730 GAGTTGAATTTTTTTTTGAAAGACAGAAA
66 GAGTTG-A-TTTTTTTTGAAAGACAGAAA
*
7355759 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCTGATGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATAT
*
7355824 GAGTTGA----TTTTGGAA-ACAGAAA
66 GAGTTGATTTTTTTTGAAAGACAGAAA
*** *
7355846 TTG-AAGTTAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATAT
*
7355910 GAGTTGATTTTTTTTAAAAG-CAGAAA
66 GAGTTGATTTTTTTTGAAAGACAGAAA
7355936 TTGAAAA
1 TTGAAAA
7355943 TACCTCAGCG
Statistics
Matches: 162, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
86 63 0.39
87 10 0.06
88 7 0.04
90 15 0.09
91 2 0.01
92 28 0.17
93 1 0.01
94 36 0.22
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (92 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTTTGAAAGACAGAAA
Found at i:7355952 original size:407 final size:393
Alignment explanation
Indices: 7355269--7357013 Score: 1506
Period size: 407 Copynumber: 4.4 Consensus size: 393
7355259 CAGAAATTAA
* * * *
7355269 AAAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGT-GCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
7355334 TTGA-TTTGAAAAGCAGAATTAGTAAAGCAGAAATTGAAAATACCTCAGCGTG-CCATAAGACTC
65 TTGATTTTTAAAA-CAGAA-T--TAAA-CAGAAATTGAAAATACCTCAGCGTGACC-TGAGGCTC
* * * *
7355397 AACTCACCTCTCGCAATATAAGTTGATTTTGGAAACATG-AATTGAAAAATAAAAATTGAAAATA
124 AACTCACCTCTCGCAATATGAGTTGATTTTGGAAACA-GAAATTGAAAGATAGAAATTGAAAAAA
*
7355461 CCTCAGCATGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCA
188 CCTCA--ACGTG-GCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCA
*
7355525 GAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
250 GAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
7355590 GAAAAGCATAAACGGAAATTGAAAATACCTCGGCGTGCCCTGAGGCTCAACTCACCTCTCGCAAT
315 GAAAAG-ATAAACAGAAATTGAAAATACCTC-GCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
7355655 ATGAGTTGA-TTTTTG
378 ATGAGTTGATTTTTTG
**
7355670 AAAAACAGAAATTGAAGTTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
7355734 TGAATTTTTTTTTGAAAGACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCTG
66 TG-A----TTTTT-AAA-ACAG-AATT---AAACAGAAATTGAAAATACCTCAGC--GTGACCTG
* *
7355799 ATGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGGAAACAGAAATTG-AAGTTAGAAATTGA
118 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGGAAACAGAAATTGAAAGATAGAAATTGA
* * *
7355863 AAATACCTCAGCATGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAA
183 AAAAACCTCA--ACGTG-GCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* *
7355927 AAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGA
245 AAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
7355992 TTTTTG---A-A-AAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCG
310 TTTTTGAAAAGATAAACAGAAATTGAAAATACCTC-GCGTGTCCTGAGGCTCAACTCACCTCTCG
7356052 CAATATGAGTTGATTTTTTTG
374 CAATATGAGTTGA-TTTTTTG
* * * * * * * * * *
7356073 AAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCATCTATCACAAAACG
1 AAAAACAGAAATTG--AAAATACCTCAGCGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATG
* *
7356138 AGTTGATTTTT------G-A-CAAACAGAAATTGAAATTACCTCAGCGTGTAACCTGAGGCTCAA
63 AGTTGATTTTTAAAACAGAATTAAACAGAAATTGAAAATACCTCAGCGTG--ACCTGAGGCTCAA
* ******* *
7356195 CTCACCTCTCGCAATATGAGTTGATCTTTTTG-ATTTTTTTTTGAAAGACAGAAATTGAAAAAAC
126 CTCACCTCTCGCAATATGAGTTGA--TTTTGGAAACAGAAATTGAAAGATAGAAATTGAAAAAAC
* * *
7356259 CTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAA--ATAAA
189 CTCAACGTGGCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAA
*
7356320 TTGAAAATACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTG
254 TTGAAAATACCTCAGCGTGTCCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG
* * * * * *
7356384 AAAAACAGAAATTGAAGAACAGAAATGGAAAACATCTC-AGTGTCTTGAGGTTCAACTCACCTCT
316 --AAA-AG--A-T--A-AACAGAAATTGAAAATACCTCGCGTGTCCTGAGGCTCAACTCACCTCT
*
7356448 CGCAATATGAATTGATTTTTTTTG
372 CGCAATATGAGTTGA--TTTTTTG
* * *
7356472 AAAGACAGAAATTGAAAATACCTCAACGTGT-CTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * *
7356536 TGATTTTT--TAC------AAACAAAAATTGAAATTATCTCAGCGTGTCCTGAGGCTCAACTCAC
66 TGATTTTTAAAACAGAATTAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
***
7356593 CTCTCGCAATATGAGTTGATTTT--------TTTTTGAAAGATAGAAATTGAAAAAACCTCAACG
131 CTCTCGCAATATGAGTTGATTTTGGAAACAGAAATTGAAAGATAGAAATTGAAAAAACCTCAACG
* * *
7356650 TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAACAGAAATT-A
196 TGGCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAAGCAGAAATTGA
**
7356714 AAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGC---A--A--TG-----TG---AG-
258 AAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGA
* *
7356763 ----CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
322 TAAACAGAAATTGAAAATACCTC-GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
7356824 A-TTTTTG
386 ATTTTTTG
*
7356831 AAAAATAAATTGACAAACGAAAATTGAAAATACCTCAGC--GT-CTTGAGGCTCAACTCACCTCT
1 ----A-AAA---AC--A-G-AAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCT
* ******* * *
7356893 CGCAATATGAGTTGATTTTTTTGATTTTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTC
54 CGCAATATGAGTTGA--TTTTTAAAACAGAATT-AA-ACAGAAATTGAAAATACCTCAGCGTGAC
* * * * * *
7356958 TTGAGGCTCAACTCACCTCTCGCACTATGAGTTTATTTTTGAAAAATAAATTGAAA
115 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGGAAACAGAAATTGAAA
7357014 ATACCTCAGC
Statistics
Matches: 1146, Mismatches: 106, Indels: 196
0.79 0.07 0.14
Matches are distributed among these distances:
359 6 0.01
360 16 0.01
362 38 0.03
363 1 0.00
364 2 0.00
367 2 0.00
369 39 0.03
370 1 0.00
371 25 0.02
373 1 0.00
377 2 0.00
380 2 0.00
381 60 0.05
383 2 0.00
384 128 0.11
386 19 0.02
387 1 0.00
388 97 0.08
389 20 0.02
390 30 0.03
391 43 0.04
392 3 0.00
393 36 0.03
394 1 0.00
395 60 0.05
397 15 0.01
398 36 0.03
399 53 0.05
400 19 0.02
401 88 0.08
402 6 0.01
403 18 0.02
404 2 0.00
405 17 0.01
406 30 0.03
407 177 0.15
408 49 0.04
409 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (393 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTAAAACAGAATTAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTTTGGAAACAGAAATTGAAAGATAGAAATTGAAAAAACCTCAACG
TGGCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAA
TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGATAAA
CAGAAATTGAAAATACCTCGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTG
Found at i:7356018 original size:73 final size:74
Alignment explanation
Indices: 7355854--7357086 Score: 964
Period size: 73 Copynumber: 16.1 Consensus size: 74
7355844 AATTGAAGTT
*
7355854 AGAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* *
7355918 TTTTTTTAAAAGC
62 TTTTTTGAAAAAC
*
7355931 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGA-TTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
7355995 TTGAAAAAC
66 TTGAAAAAC
*
7356004 AGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
*
7356069 TTTGAAAAAT
65 TTTGAAAAAC
* * * * * * * * *
7356079 ATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCATCTATCACAAAACGAGTTGA
1 AGAAATTG--AAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
7356144 -TTTTTGACAAAC
62 TTTTTTGAAAAAC
*
7356156 AGAAATTGAAATTACCTCAGCGTGTAACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATC
1 AGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-
7356221 TTTTTGATTTTTTTTTGAAAGAC
63 TTTTTGA----------AAA-AC
* * *
7356244 AGAAATTGAAAAAACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
7356308 TTG-AAAA-
66 TTGAAAAAC
* * *
7356315 ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
7356380 TTTGAAAAAC
65 TTTGAAAAAC
* * * *
7356390 AGAAATTGAAGAACAGAAATGGAAAACATC-TCAGTGTCTTGAGGTTCAACTCACCTCTCGCAAT
1 AGAAATT---G---A-AAAT-----ACCTCAGC-GTGTCCTGAGGCTCAACTCACCTCTCGCAAT
* *
7356454 ATGAATTGATTTTTTTTGAAAGAC
53 ATGAGTTGA--TTTTTTGAAAAAC
* *
7356478 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
7356543 TT-ACAAAC
66 TTGAAAAAC
* * *
7356551 AAAAATTGAAATTATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---T
* *
7356616 TTTTTGAAAGAT
63 TTTTTGAAAAAC
* * *
7356628 AGAAATTGAAAAAACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----
7356693 TTTTTTGAAAAAC
62 TTTTTTGAAAAAC
* * ** *
7356706 AGAAATT-AAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGCAGA--A
1 AGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
7356768 ATTGAAAATACC
65 TTTGAAAA-A-C
** ** * * * * * * * * *
7356780 TCAACGTG----T--CT-TGAG-G--CTCA-ACTCACCTCTCGCAATAT-G-AGT-TGATTTTTG
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC-C--TCTCGCAATATGA--GTTG
*** *
7356831 AAAAATAAATTGACAAAC
61 ----ATTTTTTGAAAAAC
*
7356849 -GAAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AG-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
7356911 TTTTGATTTTTTTTTAAAGAC
64 TTTTGA---------AAA-AC
* * * *
7356932 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCACTATGAGTTTA-TTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
7356996 TTG-AAAA-
66 TTGAAAAAC
* *
7357003 ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
**
7357067 TTGGCAAAC
66 TTGAAAAAC
7357076 AGAAATTGAAA
1 AGAAATTGAAA
7357087 CATCAAAATA
Statistics
Matches: 945, Mismatches: 122, Indels: 182
0.76 0.10 0.15
Matches are distributed among these distances:
63 11 0.01
64 5 0.01
65 2 0.00
66 3 0.00
67 2 0.00
68 2 0.00
69 6 0.01
70 2 0.00
71 124 0.13
72 13 0.01
73 158 0.17
74 16 0.02
75 109 0.12
76 53 0.06
77 128 0.14
78 77 0.08
79 29 0.03
81 5 0.01
82 7 0.01
83 26 0.03
84 7 0.01
85 37 0.04
86 36 0.04
87 43 0.05
88 44 0.05
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTGAAAAAC
Found at i:7356296 original size:86 final size:86
Alignment explanation
Indices: 7356144--7356309 Score: 255
Period size: 86 Copynumber: 1.9 Consensus size: 86
7356134 AACGAGTTGA
** *
7356144 TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTAACCTGAGGCTCAACTCACCTCTCGCAA
1 TTTTTGACAAACAGAAATTGAAAAAACCTCAACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAA
7356209 TATGAGTTGATCTTTTTGATTTT
65 TATGAGTTGAT-TTTTTGATTTT
*
7356232 TTTTTGA-AAGACAGAAATTGAAAAAACCTCAACGTGT-CTTGAGGCTCAACTCACCTCTCGCAA
1 TTTTTGACAA-ACAGAAATTGAAAAAACCTCAACGTGTACCTGAGGCTCAACTCACCTCTCGCAA
7356295 TATGAGTTGATTTTT
65 TATGAGTTGATTTTT
7356310 GAAAAATAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
85 4 0.05
86 36 0.49
87 2 0.03
88 31 0.42
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (86 bp):
TTTTTGACAAACAGAAATTGAAAAAACCTCAACGTGTACCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTTGATTTT
Found at i:7356398 original size:14 final size:14
Alignment explanation
Indices: 7356381--7356415 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7356371 ATTGATTTTT
7356381 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
7356395 TTGAAGAACAGAAA
1 TTGAAAAACAGAAA
*
7356409 TGGAAAA
1 TTGAAAA
7356416 CATCTCAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.06, G:0.20, T:0.14
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:7356482 original size:234 final size:230
Alignment explanation
Indices: 7356224--7357086 Score: 1044
Period size: 226 Copynumber: 3.8 Consensus size: 230
7356214 GTTGATCTTT
*
7356224 TTGATTTTTTTTTGAAAGACAGAAATTGAAAAAACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
7356289 TCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACT
66 TCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACT
*
7356354 CACCTCTCGCAATATGAATTGATTTTTTTGAAAAACAGAAATTGAAGAACAGAAATGGAAAACAT
131 CACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAA-AACAGAAAT-GAAAACA-
*
7356419 CTCAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAA
191 CTCAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAA
7356459 TTGA-TTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* * * * *
7356523 TCGCAATATGAGTTGATTTTTTACAAACAAAAATTGAAATTATCTCAGCGTGTCCTGAGGCTCAA
66 TCGCAATATGAGTTGATTTTTGA-AAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAA
* * **
7356588 CTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGATAGAAATTGAAAA-A-ACCT-----C
129 CTCACCTCTCGCAATATGAGTTGA----TTTTTGAAAAACAGAAATTGAAAACAGAAATGAAAAC
* *
7356646 A-AC-GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
190 ACTCAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAA
* *
7356685 TTGATTTTTTTTTTGAAAAACAGAAATT-AAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACC
1 TTGA-TTTTTTTTTGAAAGACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACC
* * * * *
7356749 TCTCGC-A-AT--G-TGA-----G---CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAA
64 TCTCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAA
* *
7356801 CTCACCTCTCGCAATATGAGTTGATTTTTG-AAAA-ATAAATTGACAAAC-GAAAATTGAAAATA
129 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGA-AAACAG-AAA-TGAAAACA
*
7356863 CCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
191 -CTCAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA----A
7356908 TTTTTTTGATTTTTTTTT-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTC
1 -----TTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTC
* *
7356972 ACCTCTCGCACTATGAGTTTATTTTTGAAAAATAAATTGAAAATACCTCAGCGTGCCCTGAGGCT
61 ACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAAATACCTCAGCGTGCCCTGAGGCT
**
7357037 CAACTCACCTCTCGCAATATGAGTTGATTTTTGGCAAACAGAAATTGAAA
126 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAA
7357087 CATCAAAATA
Statistics
Matches: 541, Mismatches: 42, Indels: 85
0.81 0.06 0.13
Matches are distributed among these distances:
207 8 0.01
208 6 0.01
209 6 0.01
210 1 0.00
211 1 0.00
213 56 0.10
216 1 0.00
218 1 0.00
219 34 0.06
223 3 0.01
224 1 0.00
226 88 0.16
227 19 0.04
228 63 0.12
229 2 0.00
230 1 0.00
231 2 0.00
234 81 0.15
235 9 0.02
236 58 0.11
237 2 0.00
238 22 0.04
239 63 0.12
240 5 0.01
241 8 0.01
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (230 bp):
TTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAACAGAAATGAAAACACTCAG
TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAA
Found at i:7356614 original size:384 final size:393
Alignment explanation
Indices: 7355995--7356757 Score: 1071
Period size: 384 Copynumber: 1.9 Consensus size: 393
7355985 GAGTTGATTT
* *
7355995 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATGGAAAACACCTCAG-ATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * ** *
7356060 GTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCAT
65 ATTGATTTTTTTGAAAAACAGAAATTG-AAAAATACCTCAACGTGTGATCTGAAGCTCAACTCAC
*
7356125 CTATCACAAAACGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTAACCTGAGG
129 CTATCACAAAACGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGT-ACCTGAGG
7356190 CTCAACTCACCTCTCGCAATATGAGTTGATCTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAA
193 CTCAACTCACCTCTCGCAATATGA--TG-----TTTGATTTTTTTTTGAAAGACAGAAATTGAAA
*
7356255 AAACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-AAAA-AT
251 AAACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAG
7356317 AAATTGAAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTT
316 AAATT-AAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTT
7356381 TTGAAAAACAGAAA
380 TTGAAAAACAGAAA
* * * *
7356395 TTGAAGAACAGAAATGGAAAACATCTCAG-TGTCTTGAGGTTCAACTCACCTCTCGCAATATGAA
1 TTGAAAAACAGAAATGGAAAACACCTCAGATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAA
* * *
7356459 TTGATTTTTTTTGAAAGACAGAAATTG-AAAATACCTCAACGTGT-CT-TGAGGCTCAACTCACC
66 TTGA-TTTTTTTGAAAAACAGAAATTGAAAAATACCTCAACGTGTGATCTGAAGCTCAACTCACC
* * * * * *
7356521 TCTCGCAATATGAGTTGATTTTTTACAAACAAAAATTGAAATTATCTCAGCGTGT-CCTGAGGCT
130 TATCACAAAACGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTACCTGAGGCT
*
7356585 CAACTCACCTCTCGCAATATGA-G-TTGATTTTTTTTTGAAAGATAGAAATTGAAAAAACCTCAA
195 CAACTCACCTCTCGCAATATGATGTTTGATTTTTTTTTGAAAGACAGAAATTGAAAAAACCTCAA
7356648 CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAACAGAAATT
260 CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGAAAAACAGAAATT
* *
7356713 AAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
321 AAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAAT
7356758 GTGAGCAGAA
Statistics
Matches: 328, Mismatches: 26, Indels: 27
0.86 0.07 0.07
Matches are distributed among these distances:
384 80 0.24
389 6 0.02
390 9 0.03
391 44 0.13
393 31 0.09
395 62 0.19
396 1 0.00
397 15 0.05
398 36 0.11
399 19 0.06
400 25 0.08
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (393 bp):
TTGAAAAACAGAAATGGAAAACACCTCAGATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAA
TTGATTTTTTTGAAAAACAGAAATTGAAAAATACCTCAACGTGTGATCTGAAGCTCAACTCACCT
ATCACAAAACGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTACCTGAGGCTC
AACTCACCTCTCGCAATATGATGTTTGATTTTTTTTTGAAAGACAGAAATTGAAAAAACCTCAAC
GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAT
TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTTGAAAAACAG
AAA
Found at i:7356741 original size:78 final size:76
Alignment explanation
Indices: 7356395--7356762 Score: 496
Period size: 78 Copynumber: 4.9 Consensus size: 76
7356385 AAAACAGAAA
* * * * *
7356395 TTGAAGAACAGAAATGGAAAACATCTC-A-GTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7356458 ATTGATTTTTT
66 GTTGATTTTTT
*
7356469 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7356534 GTTGA--TTTT
66 GTTGATTTTTT
* * * * * *
7356543 TT-ACAAACAAAAATTGAAATTATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7356607 GTTGATTTTTTT
66 GTTGA-TTTTTT
* * *
7356619 TTGAAAGATAGAAATTGAAAAAACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7356684 GTTGATTTTTTTT
66 GTTGA--TTTTTT
* *
7356697 TTGAAAAACAGAAATT-AAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTG
1 TTGAAAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
7356761 AG
65 AG
7356763 CAGAAATTGA
Statistics
Matches: 258, Mismatches: 28, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
73 60 0.23
74 28 0.11
75 1 0.00
76 44 0.17
77 62 0.24
78 63 0.24
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (76 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTT
Found at i:7356773 original size:150 final size:150
Alignment explanation
Indices: 7356395--7357086 Score: 611
Period size: 150 Copynumber: 4.6 Consensus size: 150
7356385 AAAACAGAAA
* * * * * *
7356395 TTGAAGAACAGAAATGGAAAACATCTCA--GTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
***
7356458 ATTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
66 GCAGA---TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
7356523 TCGCAATATGAGTTGA---TTTT
128 TCGCAATATGAGTTGATTTTTTT
* * * *
7356543 TT-ACAAACAAAAATTGAAATTATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
** * *
7356607 GTTGATTTTTTTTTGAAAGATAGAAATTGAAAAAACCTCAACGTGTCTTGAGGCTCAACTCACCT
66 GCAGA----TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
7356672 CTCGCAATATGAGTTGATTTTTTTT
127 CTCGCAATATGAGTTGA-TTTTTTT
*
7356697 TTGAAAAACAGAAATT-AAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGC-A-AT-
1 TTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
7356758 ----G-----TG--AG-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
65 AGCAGATTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
*
7356811 GCAATATGAGTTGATTTTTGAAAAATAAA
130 GCAATATGAGTTGATTTTT------T--T
* *
7356840 TTGACAAAC-GAAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAG-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
7356902 AGTTGATTTTTTTGATTTTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTC
65 AG--CA-------GA---TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTC
* *
7356967 AACTCACCTCTCGCACTATGA---G-TTTATTT
118 AACTCACCTCTCGCAATATGAGTTGATTTTTTT
* *
7356996 TTG-AAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
** *
7357059 GTTGATTTTTGGCAA-ACAGAAATTGAAA
66 GCAGATTTTT-GAAAGACAGAAATTGAAA
7357087 CATCAAAATA
Statistics
Matches: 462, Mismatches: 32, Indels: 104
0.77 0.05 0.17
Matches are distributed among these distances:
135 5 0.01
136 60 0.13
137 2 0.00
139 2 0.00
141 27 0.06
142 2 0.00
143 24 0.05
144 22 0.05
145 2 0.00
147 21 0.05
148 3 0.01
149 37 0.08
150 74 0.16
153 2 0.00
154 29 0.06
155 49 0.11
156 35 0.08
157 1 0.00
158 1 0.00
164 4 0.01
165 2 0.00
167 2 0.00
168 56 0.12
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (150 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GCAGATTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTT
Found at i:7356795 original size:58 final size:58
Alignment explanation
Indices: 7356705--7356820 Score: 198
Period size: 58 Copynumber: 2.0 Consensus size: 58
7356695 TTTTGAAAAA
* *
7356705 CAGAAATTAAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAG
1 CAGAAATTAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
7356763 CAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 CAGAAATT-AAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
7356821 TTGATTTTTG
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
58 51 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (58 bp):
CAGAAATTAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
Found at i:7356891 original size:83 final size:85
Alignment explanation
Indices: 7356763--7357013 Score: 348
Period size: 83 Copynumber: 3.0 Consensus size: 85
7356753 GCAATGTGAG
7356763 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
7356828 TTGAAAAATAAATTGACAA-A
66 TTGAAAAATAAATTGA-AAGA
*
7356848 C-GAAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 CAG-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*** ** *** *
7356910 TTTTTGATTTTTTTTTAAAGA
65 TTTGAAAAATAAATTGAAAGA
* *
7356931 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCACTATGAGTTTATTT
1 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
7356996 TTGAAAAATAAATTGAAA
66 TTGAAAAATAAATTGAAA
7357014 ATACCTCAGC
Statistics
Matches: 139, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
82 2 0.01
83 67 0.48
84 4 0.03
85 66 0.47
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (85 bp):
CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTGAAAAATAAATTGAAAGA
Found at i:7357012 original size:71 final size:71
Alignment explanation
Indices: 7356934--7357069 Score: 227
Period size: 71 Copynumber: 1.9 Consensus size: 71
7356924 TTAAAGACAG
* * * *
7356934 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCACTATGAGTTTATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
7356999 AAAAAT
66 AAAAAT
*
7357005 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
7357070 GCAAACAGAA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 60 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAAT
Found at i:7363588 original size:3 final size:3
Alignment explanation
Indices: 7363580--7363616 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
7363570 ACTAATTTAA
7363580 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7363617 CAAACCAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7368348 original size:29 final size:29
Alignment explanation
Indices: 7368297--7368394 Score: 87
Period size: 29 Copynumber: 3.4 Consensus size: 29
7368287 TTCTGGGGCT
*
7368297 AAATGTAATTTTTAGAAAA-TTTAGGGTTA
1 AAATGTAA-TTTAAGAAAAGTTTAGGGTTA
7368326 AAATGTAATTTAAGAAAAGTTTAGGGATCT-
1 AAATGTAATTTAAGAAAAGTTTAGGG-T-TA
* * * *
7368356 AAGTGAAATTAAAG-AAAGTTTAAGGGTCA
1 AAATGTAATTTAAGAAAAGTTT-AGGGTTA
7368385 AAATG-AATTT
1 AAATGTAATTT
7368395 TTTATTTTAT
Statistics
Matches: 57, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
28 13 0.23
29 27 0.47
30 16 0.28
31 1 0.02
ACGTcount: A:0.45, C:0.02, G:0.19, T:0.34
Consensus pattern (29 bp):
AAATGTAATTTAAGAAAAGTTTAGGGTTA
Found at i:7373201 original size:79 final size:79
Alignment explanation
Indices: 7373106--7373256 Score: 205
Period size: 78 Copynumber: 1.9 Consensus size: 79
7373096 TGGGTTAGTC
* * * * *
7373106 CAAAGACAACATAAAAAAAAGGTTGGGTTAGGTCAAACATTTGCCAATGAAAAA-AAAGGTTGAG
1 CAAAGACAACA-CAAAAAAAGGTTGGGTTAGATAAAACATTTGCCAACGAAAAATAAAAGTTGAG
7373170 ATAAGTTATGAGCAA
65 ATAAGTTATGAGCAA
* * *
7373185 CAAAGGCAACACAAAAAAAGGTTGGGTTAGATAAAATATTTGCCAACGAAAAATAAAAGTTGTGA
1 CAAAGACAACACAAAAAAAGGTTGGGTTAGATAAAACATTTGCCAACGAAAAATAAAAGTTGAGA
*
7373250 TAGGTTA
66 TAAGTTA
7373257 ATATTTTCCC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
78 37 0.60
79 25 0.40
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.21
Consensus pattern (79 bp):
CAAAGACAACACAAAAAAAGGTTGGGTTAGATAAAACATTTGCCAACGAAAAATAAAAGTTGAGA
TAAGTTATGAGCAA
Found at i:7379713 original size:31 final size:29
Alignment explanation
Indices: 7379644--7379717 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
7379634 ACAAAATAAT
**
7379644 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATGGCA
*
7379673 AACATAAGTGACTAAAATGTAACATGAGGCA
1 AACATAAGTGACTAAAACGTAACAT--GGCA
*
7379704 AACAAAAGTGACTA
1 AACATAAGTGACTA
7379718 TTTTTGTAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
31 15 0.38
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATGGCA
Found at i:7393445 original size:24 final size:25
Alignment explanation
Indices: 7393411--7393472 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
7393401 GTTCATATAT
*
7393411 GCTCATACAAGCTGTA-AACGGAAA
1 GCTCATACAAGCTGAATAACGGAAA
*
7393435 GCTCATGCAAGCTGAATAACGGAAA
1 GCTCATACAAGCTGAATAACGGAAA
*
7393460 GCTCATACGAGCT
1 GCTCATACAAGCT
7393473 AAGTATTGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
24 14 0.42
25 19 0.58
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.18
Consensus pattern (25 bp):
GCTCATACAAGCTGAATAACGGAAA
Found at i:7396956 original size:16 final size:16
Alignment explanation
Indices: 7396937--7396988 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
7396927 TTGTTTTTCA
7396937 AAAATATTTTTGAGAT
1 AAAATATTTTTGAGAT
* *
7396953 AAAAATATTATT-AAAT
1 -AAAATATTTTTGAGAT
*
7396969 AAAATACTTTTGAGAT
1 AAAATATTTTTGAGAT
7396985 AAAA
1 AAAA
7396989 AATATTTTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
15 9 0.31
16 10 0.34
17 10 0.34
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.37
Consensus pattern (16 bp):
AAAATATTTTTGAGAT
Found at i:7396958 original size:17 final size:17
Alignment explanation
Indices: 7396936--7396996 Score: 72
Period size: 17 Copynumber: 3.6 Consensus size: 17
7396926 ATTGTTTTTC
7396936 AAAAATATTTTTGAGAT
1 AAAAATATTTTTGAGAT
* *
7396953 AAAAATATTATT-AAAT
1 AAAAATATTTTTGAGAT
*
7396969 -AAAATACTTTTGAGAT
1 AAAAATATTTTTGAGAT
7396985 AAAAAATATTTT
1 -AAAAATATTTT
7396997 GTAAAAACAT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
15 9 0.26
16 6 0.17
17 11 0.31
18 9 0.26
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.39
Consensus pattern (17 bp):
AAAAATATTTTTGAGAT
Found at i:7405475 original size:12 final size:12
Alignment explanation
Indices: 7405452--7405485 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7405442 TATATATTTT
*
7405452 AAAATTATATAA
1 AAAATAATATAA
*
7405464 AAACTAATATAA
1 AAAATAATATAA
7405476 AAAATAATAT
1 AAAATAATAT
7405486 GGGCGGGCCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:7407784 original size:40 final size:41
Alignment explanation
Indices: 7407719--7407863 Score: 118
Period size: 41 Copynumber: 3.5 Consensus size: 41
7407709 CAGCGTTAGT
*
7407719 GCATTTTTCCCATAAACGCCATAAAAGGTAAAGCAATAGCG
1 GCATTTTTCCCATAAACGCCGTAAAAGGTAAAGCAATAGCG
* * * * * *
7407760 GCATTTTT-GCATAAATGCCGTAAAAAGTTAAA-AATTATAACA
1 GCATTTTTCCCATAAACGCCGT-AAAAGGTAAAGCA--ATAGCG
* * * *
7407802 GCGTTTTTCTCATAAATGCCACT-AAAGGTAAAGCAATAGCG
1 GCATTTTTCCCATAAACGCC-GTAAAAGGTAAAGCAATAGCG
7407843 GCATTTTAT-CCATAAACGCCG
1 GCATTTT-TCCCATAAACGCCG
7407864 CAAATATTTT
Statistics
Matches: 79, Mismatches: 18, Indels: 15
0.71 0.16 0.13
Matches are distributed among these distances:
40 11 0.14
41 36 0.46
42 20 0.25
43 11 0.14
44 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (41 bp):
GCATTTTTCCCATAAACGCCGTAAAAGGTAAAGCAATAGCG
Found at i:7412222 original size:26 final size:26
Alignment explanation
Indices: 7412186--7412237 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
7412176 CCCCAGAGAA
7412186 AAAGGTCCCGAGAATGATACTGACAT
1 AAAGGTCCCGAGAATGATACTGACAT
*
7412212 AAAGGTCCCGAGAATGATATTGACAT
1 AAAGGTCCCGAGAATGATACTGACAT
7412238 TTATATGCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (26 bp):
AAAGGTCCCGAGAATGATACTGACAT
Found at i:7423324 original size:8 final size:8
Alignment explanation
Indices: 7423311--7423339 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7423301 AATAAATAAA
7423311 AAATTATT
1 AAATTATT
7423319 AAATTATT
1 AAATTATT
7423327 AAA-TATT
1 AAATTATT
7423334 AAATTA
1 AAATTA
7423340 AAATAATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
AAATTATT
Found at i:7423966 original size:17 final size:17
Alignment explanation
Indices: 7423941--7423975 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7423931 GTATTTTTAA
*
7423941 TGGATTAACTATGTAAT
1 TGGAATAACTATGTAAT
*
7423958 TGGAATAACTTTGTAAT
1 TGGAATAACTATGTAAT
7423975 T
1 T
7423976 AATAGATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.43
Consensus pattern (17 bp):
TGGAATAACTATGTAAT
Found at i:7424396 original size:12 final size:13
Alignment explanation
Indices: 7424368--7424399 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
7424358 ATTAATTAAT
7424368 TTTAAAATAATCA
1 TTTAAAATAATCA
7424381 TTTAAAATAA-CA
1 TTTAAAATAATCA
7424393 TTTAAAA
1 TTTAAAA
7424400 GTTAGATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (13 bp):
TTTAAAATAATCA
Found at i:7433416 original size:5 final size:5
Alignment explanation
Indices: 7433402--7433468 Score: 68
Period size: 5 Copynumber: 13.4 Consensus size: 5
7433392 GCAACCCAAT
* *
7433402 TTTTA TTTTTA TTTTTA TTTTA TTTTA ATTTA TTTTA TTTTA ATTTA TTTT-
1 TTTTA -TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
7433453 TTCTTA --TTA TTTTA TT
1 TT-TTA TTTTA TTTTA TT
7433469 ATTTATTATT
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
3 3 0.06
4 2 0.04
5 37 0.70
6 11 0.21
ACGTcount: A:0.21, C:0.01, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:7433435 original size:15 final size:15
Alignment explanation
Indices: 7433415--7433468 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
7433405 TATTTTTATT
7433415 TTTATTTTATTTTAA
1 TTTATTTTATTTTAA
7433430 TTTATTTTATTTTAA
1 TTTATTTTATTTTAA
7433445 TTTATTTT-TTCTT-A
1 TTTATTTTATT-TTAA
7433459 -TTATTTTATT
1 TTTATTTTATT
7433469 ATTTATTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.19
14 5 0.14
15 25 0.68
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTATTTTATTTTAA
Found at i:7433476 original size:15 final size:14
Alignment explanation
Indices: 7433402--7433480 Score: 70
Period size: 15 Copynumber: 5.3 Consensus size: 14
7433392 GCAACCCAAT
7433402 TTTTATTTTTATTTTTA
1 TTTTATTTTTA---TTA
*
7433419 TTTTATTTTAATTTA
1 TTTTATTTTTA-TTA
*
7433434 TTTTATTTTAATTTA
1 TTTTATTTTTA-TTA
*
7433449 TTTT-TTCTTATTA
1 TTTTATTTTTATTA
7433462 TTTTATTATTTATTA
1 TTTTATT-TTTATTA
7433477 TTTT
1 TTTT
7433481 CAGATATTAA
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
13 7 0.12
14 6 0.11
15 33 0.59
17 10 0.18
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTATTTTTATTA
Found at i:7434381 original size:96 final size:96
Alignment explanation
Indices: 7434206--7434385 Score: 254
Period size: 96 Copynumber: 1.9 Consensus size: 96
7434196 TCTAAGAATG
* **
7434206 TTTGGGTTGAGTAACCGGGGTGAGGTGCCTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCGATA
1 TTTGGGCTGAGTAACCGGGGTGAGGTGCCTGGCTGTCATCTCTCTTCGCATCAAAAGGTTAAATA
* * *
7434271 TGTTTTTAGGAAAAATAAAAATTAGGAATAT
66 TATTCTAAGGAAAAATAAAAATTAGGAATAT
* * *
7434302 TTTGGGCTGAGTAACCGGGGTGGGGTGCTTGGCTGTCATCTCTCTTCG-TTCAAAAGGTTAAATA
1 TTTGGGCTGAGTAACCGGGGTGAGGTGCCTGGCTGTCATCTCTCTTCGCATCAAAAGGTTAAATA
*
7434366 TATTCCTAAGTAAAAATAAA
66 TATT-CTAAGGAAAAATAAA
7434386 TAAATTAAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
95 16 0.22
96 57 0.78
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (96 bp):
TTTGGGCTGAGTAACCGGGGTGAGGTGCCTGGCTGTCATCTCTCTTCGCATCAAAAGGTTAAATA
TATTCTAAGGAAAAATAAAAATTAGGAATAT
Found at i:7434421 original size:7 final size:7
Alignment explanation
Indices: 7434409--7434441 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
7434399 AATTCTATAA
7434409 AAAAAAG
1 AAAAAAG
7434416 AAAAAA-
1 AAAAAAG
7434422 AAAAAAG
1 AAAAAAG
7434429 AAAAAAG
1 AAAAAAG
7434436 AAAAAA
1 AAAAAA
7434442 AGTCATTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:7434423 original size:13 final size:13
Alignment explanation
Indices: 7434407--7434441 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
7434397 AAAATTCTAT
7434407 AAAAAAAAGAAAA
1 AAAAAAAAGAAAA
7434420 AAAAAAAAGAAAA
1 AAAAAAAAGAAAA
7434433 AAGAAAAAA
1 AA-AAAAAA
7434442 AGTCATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGAAAA
Found at i:7435022 original size:15 final size:15
Alignment explanation
Indices: 7435002--7435034 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
7434992 ACTCCATTTT
7435002 ATTTATATTAGGATA
1 ATTTATATTAGGATA
7435017 ATTTATATTAGGATA
1 ATTTATATTAGGATA
7435032 ATT
1 ATT
7435035 ATTAGGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (15 bp):
ATTTATATTAGGATA
Found at i:7435849 original size:17 final size:18
Alignment explanation
Indices: 7435816--7435849 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7435806 TATTCCTCAT
*
7435816 TTTAATTTCTGCAATTTA
1 TTTAATTTCTACAATTTA
7435834 TTTAATTTC-ACAATTT
1 TTTAATTTCTACAATTT
7435850 CAATTCACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.12, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTAATTTCTACAATTTA
Found at i:7437159 original size:27 final size:27
Alignment explanation
Indices: 7437120--7437181 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
7437110 GTGTACCGAG
7437120 ACCCCTTAGTTGATAAAATGACTATTAT
1 ACCCC-TAGTTGATAAAATGACTATTAT
* *
7437148 ACCCCTAGTTGATAAAATGATTGTTAT
1 ACCCCTAGTTGATAAAATGACTATTAT
*
7437175 GCCCCTA
1 ACCCCTA
7437182 TGAGATGTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (27 bp):
ACCCCTAGTTGATAAAATGACTATTAT
Done.