Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 213 of 343
Found at i:70165747 original size:48 final size:48
Alignment explanation
Indices: 70165676--70166045 Score: 406
Period size: 48 Copynumber: 7.7 Consensus size: 48
70165666 TATGTGTGCT
70165676 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
*
70165724 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
* * * ** * * *
70165772 AATGTAAGACAATGTCTGGGACATGACATCGGCGTTGA-TATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-ATTATGAGAGCC
* * * *
70165820 AGTATAAGACCATGTCTGGGACATGGCATCGACCACATTATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
*
70165868 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCAATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-ATTATGAGAGCC
* * * ** * * *
70165916 AGTGTAAAACCATGTTTGGAACATGGCATC-GATATTGTTAT-ATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TATTATGA-GAGCC
* ** **
70165964 AGTGTAAGACCATGTTTGGGACATGGCATCAACACCGATGTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CATAT-TATGAGAGCC
*
70166014 AGTGTAAGACCATGTCCGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
70166046 TATTTTACCC
Statistics
Matches: 264, Mismatches: 48, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
47 3 0.01
48 223 0.84
49 3 0.01
50 34 0.13
51 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
Found at i:70165922 original size:144 final size:144
Alignment explanation
Indices: 70165661--70166045 Score: 542
Period size: 144 Copynumber: 2.7 Consensus size: 144
70165651 AAGACATTTG
* *
70165661 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAG
* *
70165726 TGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAATGTAAGACAATGTCTGG
66 TGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAAACAATGTCTGG
* *
70165791 GACATGACATCGGC
131 AACATGACATCGAC
* *
70165805 GTTGATATGTGTGCTAGTATAAGACCATGTCTGGGACATGGCATCGACCACATTATGTGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAG
* * * *
70165870 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGAGAGCCAGTGTAAAACCATGTTTGG
66 TGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAAACAATGTCTGG
* *
70165935 AACATGGCATCGAT
131 AACATGACATCGAC
* * *
70165949 ATTGTTATATGTGT-C-AGTGTAAGACCATGTTTGGGACATGGCATC-AACACCGATGTATGAGA
1 GTTG--ATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-C-AT-TATGAGA
*
70166011 GCCAGTGTAAGACCATGTCCGGGACATGGCATCGG
61 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
70166046 TATTTTACCC
Statistics
Matches: 216, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
143 3 0.01
144 162 0.75
145 3 0.01
146 48 0.22
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (144 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAG
TGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAAACAATGTCTGG
AACATGACATCGAC
Found at i:70184218 original size:21 final size:20
Alignment explanation
Indices: 70184179--70184219 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
70184169 CCCTGCATTT
**
70184179 TGAAAAATTTTTTATTTTTC
1 TGAAAAATTTCATATTTTTC
70184199 TGAAAAATTTCATATGTTTTC
1 TGAAAAATTTCATAT-TTTTC
70184220 GATTTAGTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (20 bp):
TGAAAAATTTCATATTTTTC
Found at i:70187801 original size:17 final size:17
Alignment explanation
Indices: 70187779--70187812 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
70187769 ATCCACTAAT
*
70187779 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
70187796 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
70187813 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:70192440 original size:17 final size:17
Alignment explanation
Indices: 70192418--70192451 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
70192408 ATCCACTAAT
*
70192418 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
70192435 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
70192452 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:70193567 original size:60 final size:60
Alignment explanation
Indices: 70193439--70193569 Score: 140
Period size: 60 Copynumber: 2.2 Consensus size: 60
70193429 ATGTTTTTGT
* * * *
70193439 TACTCTCACATTTTATGGTATCCACTCATCTTTTTTGGTTTGTCCTCATATTTATTGATA
1 TACTCTCATATTTTATGCTATCCACTCATCTTTTTTGGTTTGTCATCATATGTATTGATA
* * * * * *
70193499 -ACCCCTCATGTTTTATGCTATGCACTCATGCTTTTTT-GTTTGTCATTATGTGTGTTGATA
1 TA-CTCTCATATTTTATGCTATCCACTCAT-CTTTTTTGGTTTGTCATCATATGTATTGATA
70193559 TACTCTCATAT
1 TACTCTCATAT
70193570 ATTTTGGTAA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
59 1 0.02
60 47 0.84
61 8 0.14
ACGTcount: A:0.19, C:0.20, G:0.12, T:0.49
Consensus pattern (60 bp):
TACTCTCATATTTTATGCTATCCACTCATCTTTTTTGGTTTGTCATCATATGTATTGATA
Found at i:70193798 original size:19 final size:19
Alignment explanation
Indices: 70193770--70193839 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
70193760 TCTCATGTTT
*
70193770 TTTTTAGTATATTCTCATA
1 TTTTTGGTATATTCTCATA
* *
70193789 TTTTTGGTATACTCTCAGA
1 TTTTTGGTATATTCTCATA
*
70193808 TTTTTTG-ATATTCTCTCATA
1 TTTTTGGTATA-T-TCTCATA
70193828 TTTTTTGGTATA
1 -TTTTTGGTATA
70193840 CCCTCAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
18 3 0.08
19 22 0.55
20 6 0.15
21 6 0.15
22 3 0.08
ACGTcount: A:0.21, C:0.11, G:0.10, T:0.57
Consensus pattern (19 bp):
TTTTTGGTATATTCTCATA
Found at i:70193812 original size:20 final size:20
Alignment explanation
Indices: 70193769--70193845 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
70193759 ATCTCATGTT
* *
70193769 TTTTTTAGTATATTCTCATA
1 TTTTTTGGTATACTCTCATA
*
70193789 -TTTTTGGTATACTCTCAGA
1 TTTTTTGGTATACTCTCATA
* *
70193808 TTTTTTGATATTCTCTCATA
1 TTTTTTGGTATACTCTCATA
*
70193828 TTTTTTGGTATACCCTCA
1 TTTTTTGGTATACTCTCA
70193846 AAATTGTTGA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
19 16 0.34
20 31 0.66
ACGTcount: A:0.21, C:0.16, G:0.09, T:0.55
Consensus pattern (20 bp):
TTTTTTGGTATACTCTCATA
Found at i:70193856 original size:40 final size:39
Alignment explanation
Indices: 70193782--70193858 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 39
70193772 TTTAGTATAT
* * * *
70193782 TCTCATATTTTTGGTATACTCTCAGATTTTTTGATATTC
1 TCTCATATTTTTGGTATACCCTCAAAATTGTTGATATTC
70193821 TCTCATATTTTTTGGTATACCCTCAAAATTGTTGATAT
1 TCTCATA-TTTTTGGTATACCCTCAAAATTGTTGATAT
70193859 AGTTTCAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
39 7 0.21
40 26 0.79
ACGTcount: A:0.23, C:0.16, G:0.10, T:0.51
Consensus pattern (39 bp):
TCTCATATTTTTGGTATACCCTCAAAATTGTTGATATTC
Found at i:70194071 original size:237 final size:237
Alignment explanation
Indices: 70193608--70194077 Score: 551
Period size: 237 Copynumber: 2.0 Consensus size: 237
70193598 AAACTTTCAT
** * * *** *
70193608 AATTGTTAATATAGTTTCATTATTAGAATTTGGTAAGATATATAATTTTAAGCTAAAATTTTGTG
1 AATTGTTAATATAGTTTCAAAATTAGAATTTAGTAAGAGATAT-ATCAAAAACTAAAATTTTGT-
* * *
70193673 AGAGATAAACTAAATTTAATCATAATTTTTTAAAAATGAAATTTATATAAACTAACAAATTTCTT
64 AGAGATAAACTAAATTTAATCATAATTTTTTAAAAATAAAATTTAAATAAACTAACAAATTTCCT
* * *
70193738 AATATGAACCAAAATTGGTACATCTCATGTTTTTTTTAGTATATTCTCATATTTTTGGTATACTC
129 AATATGAACCAAAATTGGTACATATCATGTTTTTTATAGTATATTCTCAAATTTTTGGTATACTC
* *
70193803 TCAGATTTTTTGATATTCTCTCATATTTTTTGGTATACCCTCAA
194 TCAGATTTTTTGATATACTCTCATATTTTTTGATATACCCTCAA
*
70193847 AATTGTTGATATAGTTTCAAAATTAGAATTTAGTAAGAGATAT-TCAAAAACATAAAATTTTGT-
1 AATTGTTAATATAGTTTCAAAATTAGAATTTAGTAAGAGATATATCAAAAAC-TAAAATTTTGTA
* * * *
70193910 GAGATAAAGTAAATTTAATTATAAATTTTTTAAAAAATAAAATTTAAATAAATTAAGAAATTTCC
65 GAGATAAACTAAATTTAATCAT-AATTTTTT-AAAAATAAAATTTAAATAAACTAACAAATTTCC
*
70193975 TAATATGAACC-AAATTGGTGCATATCATG-TTTTTAT-G-ATATTCCCTCACAATTTTTGGTAT
128 TAATATGAACCAAAATTGGTACATATCATGTTTTTTATAGTATATT--CTCA-AATTTTTGGTAT
* * * * *
70194036 -TTGCTTATATTTTTTGGTA-ACTCTCATGTTTTTTTGATATAC
190 ACT-CTCAGATTTTTTGATATACTCTCAT-ATTTTTTGATATAC
70194078 TCAGATTTTT
Statistics
Matches: 196, Mismatches: 27, Indels: 18
0.81 0.11 0.07
Matches are distributed among these distances:
234 5 0.03
235 1 0.01
236 38 0.19
237 64 0.33
238 50 0.26
239 38 0.19
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (237 bp):
AATTGTTAATATAGTTTCAAAATTAGAATTTAGTAAGAGATATATCAAAAACTAAAATTTTGTAG
AGATAAACTAAATTTAATCATAATTTTTTAAAAATAAAATTTAAATAAACTAACAAATTTCCTAA
TATGAACCAAAATTGGTACATATCATGTTTTTTATAGTATATTCTCAAATTTTTGGTATACTCTC
AGATTTTTTGATATACTCTCATATTTTTTGATATACCCTCAA
Found at i:70194128 original size:40 final size:41
Alignment explanation
Indices: 70194042--70194174 Score: 107
Period size: 40 Copynumber: 3.3 Consensus size: 41
70194032 GTATTTGCTT
* * * * *
70194042 ATATTTTTTGGTA-ACTCTCATGTTTTTTTGATATACTCA-G
1 ATATTTTTTGGTAGTCTCTCAT-ATATTTTGATATACCCATC
* *
70194082 AT-TTTTTTGGTA-TCTTGTCATA-ATTTTTGATAT-CCCGTC
1 ATATTTTTTGGTAGTC-TCTCATATA-TTTTGATATACCCATC
* * *
70194121 ATGTTTTTAGGTAGTCTCTCATATATTTTGATATACCCATT
1 ATATTTTTTGGTAGTCTCTCATATATTTTGATATACCCATC
70194162 ATATTTTTTGGTA
1 ATATTTTTTGGTA
70194175 CACATTCATG
Statistics
Matches: 73, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
38 2 0.03
39 22 0.30
40 31 0.42
41 18 0.25
ACGTcount: A:0.22, C:0.13, G:0.13, T:0.53
Consensus pattern (41 bp):
ATATTTTTTGGTAGTCTCTCATATATTTTGATATACCCATC
Found at i:70201197 original size:20 final size:20
Alignment explanation
Indices: 70201148--70201223 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 20
70201138 TCGTATTTCT
* *
70201148 TCATGTTTTTTGGTCAC-CAC
1 TCATATTTTTTGGT-ACTCCC
70201168 TCATAATTTTTTGGTACTCGCC
1 TCAT-ATTTTTTGGTACTC-CC
* * *
70201190 -CATGTTTTTCGGTATTCCC
1 TCATATTTTTTGGTACTCCC
70201209 TCATATTTTTTGGTA
1 TCATATTTTTTGGTA
70201224 AACTCTCAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
19 2 0.04
20 29 0.64
21 13 0.29
22 1 0.02
ACGTcount: A:0.16, C:0.21, G:0.14, T:0.49
Consensus pattern (20 bp):
TCATATTTTTTGGTACTCCC
Found at i:70201231 original size:20 final size:20
Alignment explanation
Indices: 70201208--70201283 Score: 64
Period size: 20 Copynumber: 3.8 Consensus size: 20
70201198 TCGGTATTCC
70201208 CTCATATTTTTTGGTAAACT
1 CTCATATTTTTTGGTAAACT
* * ** *
70201228 CTCAGATTATTTCATATA-T
1 CTCATATTTTTTGGTAAACT
* *
70201247 CCTCATATATTTTGGTAACCT
1 -CTCATATTTTTTGGTAAACT
*
70201268 CTCATGTTTTTTGGTA
1 CTCATATTTTTTGGTA
70201284 TCCTGTCACA
Statistics
Matches: 40, Mismatches: 14, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
19 1 0.03
20 38 0.95
21 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.11, T:0.49
Consensus pattern (20 bp):
CTCATATTTTTTGGTAAACT
Found at i:70203422 original size:26 final size:26
Alignment explanation
Indices: 70203393--70203453 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
70203383 TATACAGAGC
* *
70203393 TCCTAATTAAAGGCTCTTTGTCAGCT
1 TCCTAATTAAAAGCTCTTTGTCAACT
* *
70203419 TCCTAATTAAAAGTTCTTTGTGAACT
1 TCCTAATTAAAAGCTCTTTGTCAACT
*
70203445 TCCTGATTA
1 TCCTAATTA
70203454 TGGCTCTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (26 bp):
TCCTAATTAAAAGCTCTTTGTCAACT
Found at i:70206584 original size:36 final size:36
Alignment explanation
Indices: 70206544--70206651 Score: 112
Period size: 36 Copynumber: 2.9 Consensus size: 36
70206534 ATGGAAATAT
70206544 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
* *
70206580 AATC-TT-AGATATAATACAATCTTAGATATGATATGC
1 AATCTTTAAG-GAT-ATGCAATCTTAGATATGATATGC
* *
70206616 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT-TA-AGGATATGCAATCTT--AGATATGAT
70206652 CTTGTAATCT
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
34 2 0.03
35 4 0.07
36 30 0.52
37 1 0.02
38 9 0.16
39 2 0.03
40 10 0.17
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (36 bp):
AATCTTTAAGGATATGCAATCTTAGATATGATATGC
Found at i:70206601 original size:17 final size:19
Alignment explanation
Indices: 70206554--70206651 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
70206544 AATCTTTAAG
70206554 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
70206573 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
70206592 -A-ATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
70206609 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
70206628 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
70206649 GAT
1 GAT
70206652 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 15 0.21
18 2 0.03
19 47 0.64
21 9 0.12
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:70208851 original size:6 final size:6
Alignment explanation
Indices: 70208816--70208891 Score: 89
Period size: 6 Copynumber: 12.7 Consensus size: 6
70208806 ATATTGCAAG
* * * * *
70208816 TTTTCG TTTTCG TTTTCG TTTTCA TTTTCA TTTTCA TTTCCA TTTCCA
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA
* *
70208864 TTTTCA TTTCCA TTTTCA TTTCCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
70208892 TGGAAACCTA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 63 1.00
ACGTcount: A:0.12, C:0.21, G:0.04, T:0.63
Consensus pattern (6 bp):
TTTTCA
Found at i:70211097 original size:45 final size:44
Alignment explanation
Indices: 70210978--70211098 Score: 113
Period size: 43 Copynumber: 2.7 Consensus size: 44
70210968 CTGGTTTCAT
* * * *
70210978 AGATAAAATTTGCCACTGGGCTGTGGATACACAGAAAAAATTCGT
1 AGATAAAA-TTGTCACTGGGCTGTAGATGCACAGAAAAAATTCGC
* * * *
70211023 AGATGAAATTTTCCACT-GG-TCTAGATGCACAG-CAAAATATCGC
1 AGATAAAATTGT-CACTGGGCTGTAGATGCACAGAAAAAAT-TCGC
70211066 AGATAAAATCTGTCACTGGGCTGTAGATGCACA
1 AGATAAAAT-TGTCACTGGGCTGTAGATGCACA
70211099 ACATTATTGC
Statistics
Matches: 60, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
42 5 0.08
43 25 0.42
44 8 0.13
45 22 0.37
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (44 bp):
AGATAAAATTGTCACTGGGCTGTAGATGCACAGAAAAAATTCGC
Found at i:70211298 original size:138 final size:136
Alignment explanation
Indices: 70211050--70211336 Score: 348
Period size: 138 Copynumber: 2.1 Consensus size: 136
70211040 GGTCTAGATG
* * * *
70211050 CACAGCAAAATATCGCAGATAAAATCTGTCACTGGGCTGTAGATGCACAACATTATTGCAGGTAA
1 CACAGCAAAATATCGCAGATAAAATCTGACACTAGGCTGTAAATGCAAAACATTATTGCAGGTAA
* *
70211115 AATTTGTCAAAGGGTTATGGATGTATAGCAATTTTTTAGTTAAAGGATAAACACTACCACTA-GT
66 AATTTGT-AAA-GGTTATGGATGTACAGCAAATTTTTAGTTAAAGGATAAACACTACCACTATG-
*
70211179 CTGTAGGAA
128 CTATAGGAA
* *
70211188 CACAGCAAAATATCGTAGATAAAATTTGACACTAGGCTGTAAATGCAAAACATTATTGCAGGTAA
1 CACAGCAAAATATCGCAGATAAAATCTGACACTAGGCTGTAAATGCAAAACATTATTGCAGGTAA
* * *
70211253 AAGCTATTG-ATAA-GTTGTGGATGTACA-CTAAATTTTTATTTAAAGGATAAACACTGCCACTA
66 AA--T-TTGTA-AAGGTTATGGATGTACAGC-AAATTTTTAGTTAAAGGATAAACACTACCACTA
* *
70211315 TGCTATGGGTA
126 TGCTATAGGAA
70211326 CACAGCAAAAT
1 CACAGCAAAAT
70211337 GTGTAAATAA
Statistics
Matches: 129, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
137 1 0.01
138 120 0.93
139 2 0.02
140 3 0.02
141 3 0.02
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (136 bp):
CACAGCAAAATATCGCAGATAAAATCTGACACTAGGCTGTAAATGCAAAACATTATTGCAGGTAA
AATTTGTAAAGGTTATGGATGTACAGCAAATTTTTAGTTAAAGGATAAACACTACCACTATGCTA
TAGGAA
Found at i:70211858 original size:84 final size:85
Alignment explanation
Indices: 70211756--70211953 Score: 206
Period size: 84 Copynumber: 2.4 Consensus size: 85
70211746 CTTTAGGGTC
* * * * ** * *
70211756 AAAATTGTAAAGTTTGAAAAAATAAGGGCAAAACTATAGAATCTAA-AAATTAGGGGAAAATTGT
1 AAAATTGTAAAATCTGAAAAAATAAGGGAAAAACTATAAAATCTAAGAAACGAAGGCAAAATTGT
* *
70211820 AAAATTTGAGAAACCGAGGT
66 AAAATTTGAAAAACAGAGGT
* * *
70211840 AAAATTATAAAATCTG-AAAAAT-AGGAAAAAAACTATAAAATCTAAGAAACGAAGGCAAATTTG
1 AAAATTGTAAAATCTGAAAAAATAAGG-GAAAAACTATAAAATCTAAGAAACGAAGGCAAAATTG
* *
70211903 TAAAATTTGAAAAATAGGGGT
65 TAAAATTTGAAAAACAGAGGT
* *
70211924 AAAAATGTTAAATCT-AAAAAATAAGGGAAA
1 AAAATTGTAAAATCTGAAAAAATAAGGGAAA
70211954 TTTGTAAATT
Statistics
Matches: 91, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
82 3 0.03
83 22 0.24
84 63 0.69
85 3 0.03
ACGTcount: A:0.55, C:0.06, G:0.17, T:0.23
Consensus pattern (85 bp):
AAAATTGTAAAATCTGAAAAAATAAGGGAAAAACTATAAAATCTAAGAAACGAAGGCAAAATTGT
AAAATTTGAAAAACAGAGGT
Found at i:70211937 original size:56 final size:54
Alignment explanation
Indices: 70211875--70211999 Score: 153
Period size: 55 Copynumber: 2.3 Consensus size: 54
70211865 AAAAAAACTA
* *
70211875 TAAAATCTAAGAAACGAAGGCAAATTTGTAAAATTTGAA-AAATAGGGGTAAAAATG
1 TAAAATCTAA-AAAAGAAGGCAAATTTGT-AAATTTGAATAAATAAGGG-AAAAATG
* * * *
70211931 TTAAATCTAAAAAATAAGGGAAATTTGTAAATTTTAATTAAATAAGGGAAAAATG
1 TAAAATCTAAAAAAGAAGGCAAATTTGTAAATTTGAA-TAAATAAGGGAAAAATG
70211986 TAAAATCTAAAAAA
1 TAAAATCTAAAAAA
70212000 ATAAGGGACA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
54 8 0.13
55 35 0.58
56 17 0.28
ACGTcount: A:0.54, C:0.04, G:0.15, T:0.26
Consensus pattern (54 bp):
TAAAATCTAAAAAAGAAGGCAAATTTGTAAATTTGAATAAATAAGGGAAAAATG
Found at i:70211987 original size:28 final size:28
Alignment explanation
Indices: 70211912--70212007 Score: 104
Period size: 28 Copynumber: 3.4 Consensus size: 28
70211902 GTAAAATTTG
* *
70211912 AAAAATAGGGGTAAAAATGTTAAATCT-A
1 AAAAATAAGGG-AAAAATGTAAAATCTAA
** * *
70211940 AAAAATAAGGGAAATTTGTAAATTTTAA
1 AAAAATAAGGGAAAAATGTAAAATCTAA
**
70211968 TTAAATAAGGGAAAAATGTAAAATCTAA
1 AAAAATAAGGGAAAAATGTAAAATCTAA
70211996 AAAAATAAGGGA
1 AAAAATAAGGGA
70212008 CACACAATCG
Statistics
Matches: 53, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
27 10 0.19
28 43 0.81
ACGTcount: A:0.56, C:0.02, G:0.17, T:0.25
Consensus pattern (28 bp):
AAAAATAAGGGAAAAATGTAAAATCTAA
Found at i:70212006 original size:56 final size:56
Alignment explanation
Indices: 70211847--70212007 Score: 168
Period size: 56 Copynumber: 2.9 Consensus size: 56
70211837 GGTAAAATTA
* ** * * ** *
70211847 TAAAATCTGAAAAAT-AGGAAAAAAACTATAAAATCTAAGAAACGAAGGCAAATTTG
1 TAAAATTTGAAAAATAAGGGTAAAAA-TGTAAAATCTAAAAAAATAAGGGAAATTTG
* *
70211903 TAAAATTTGAAAAATAGGGGTAAAAATGTTAAATCT-AAAAAATAAGGGAAATTTG
1 TAAAATTTGAAAAATAAGGGTAAAAATGTAAAATCTAAAAAAATAAGGGAAATTTG
*
70211958 T-AAATTTTAATTAAATAAGGG-AAAAATGTAAAATCTAAAAAAATAAGGGA
1 TAAAATTTGAA--AAATAAGGGTAAAAATGTAAAATCTAAAAAAATAAGGGA
70212008 CACACAATCG
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
54 8 0.09
55 30 0.34
56 43 0.49
57 7 0.08
ACGTcount: A:0.56, C:0.04, G:0.16, T:0.24
Consensus pattern (56 bp):
TAAAATTTGAAAAATAAGGGTAAAAATGTAAAATCTAAAAAAATAAGGGAAATTTG
Found at i:70213169 original size:27 final size:26
Alignment explanation
Indices: 70213139--70213216 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 26
70213129 TTAAGAATGT
70213139 TATTAAATTATATATTTTTTTAAATA
1 TATTAAATTATATATTTTTTTAAATA
* * * *
70213165 GTATTTAATAATA-ATTATGTTAAAATA
1 -TATTAAATTATATATT-TTTTTAAATA
* *
70213192 TAATTAAAATATTTATTTTTTTAAA
1 T-ATTAAATTATATATTTTTTTAAA
70213217 ATTATATTTA
Statistics
Matches: 38, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
26 4 0.11
27 31 0.82
28 3 0.08
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (26 bp):
TATTAAATTATATATTTTTTTAAATA
Found at i:70213172 original size:55 final size:55
Alignment explanation
Indices: 70213107--70213250 Score: 175
Period size: 55 Copynumber: 2.6 Consensus size: 55
70213097 TTTTATTAAT
* * *
70213107 TTATATTTTAATAATAATTATATTAAGAATGTTATTAAATTATATATTTTTTT-AAA
1 TTATA-TTTAATAATAATTATATTAA-AATATAATTAAAATATATATTTTTTTAAAA
* *
70213163 -TAGTATTTAATAATAATTATGTTAAAATATAATTAAAATATTTATTTTTTTAAAA
1 TTA-TATTTAATAATAATTATATTAAAATATAATTAAAATATATATTTTTTTAAAA
** *
70213218 TTATATTTAATAATAATCCTATTAAAATTTAAT
1 TTATATTTAATAATAATTATATTAAAATATAAT
70213251 AATAATAACA
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
54 22 0.29
55 50 0.66
56 4 0.05
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (55 bp):
TTATATTTAATAATAATTATATTAAAATATAATTAAAATATATATTTTTTTAAAA
Found at i:70219794 original size:17 final size:18
Alignment explanation
Indices: 70219774--70219809 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
70219764 CAGAGCAGGG
70219774 AAAGAAAAA-AAAAGAAA
1 AAAGAAAAAGAAAAGAAA
*
70219791 AAAGAAAAAGAAAGGAAA
1 AAAGAAAAAGAAAAGAAA
70219809 A
1 A
70219810 TAGGGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAGAAAAGAAA
Found at i:70222472 original size:12 final size:13
Alignment explanation
Indices: 70222450--70222474 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70222440 TTAGAAATAA
70222450 TTAGAAAAAAAAG
1 TTAGAAAAAAAAG
70222463 TTAGAAAAAAAA
1 TTAGAAAAAAAA
70222475 TTAAATTGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
TTAGAAAAAAAAG
Found at i:70224418 original size:22 final size:21
Alignment explanation
Indices: 70224370--70224418 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
70224360 ATGTCAATTT
*
70224370 TTTAAATTTAAAAATAAAGAG
1 TTTAAATTTAAAAATAAAGAA
*
70224391 TCTAAATTCTAAAAATAAA-AA
1 TTTAAATT-TAAAAATAAAGAA
70224412 TATTAAA
1 T-TTAAA
70224419 CTAAATTGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (21 bp):
TTTAAATTTAAAAATAAAGAA
Found at i:70226157 original size:19 final size:16
Alignment explanation
Indices: 70226115--70226165 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
70226105 TTTACTAATT
70226115 AAAAAATAATTATAAA
1 AAAAAATAATTATAAA
*
70226131 AAAGAATAATTATATTAA
1 AAAAAATAATTATA--AA
70226149 AAATAAATAA-TATAAA
1 AAA-AAATAATTATAAA
70226165 A
1 A
70226166 TATTCAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
16 16 0.53
18 9 0.30
19 5 0.17
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (16 bp):
AAAAAATAATTATAAA
Found at i:70226211 original size:18 final size:18
Alignment explanation
Indices: 70226188--70226231 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
70226178 ATATAATTGT
*
70226188 AATTTTAAAATTTATTAA
1 AATTTTAAAATTTAATAA
*
70226206 AATTTT-TAATTTAATAA
1 AATTTTAAAATTTAATAA
70226223 AATTTTAAA
1 AATTTTAAA
70226232 TATATATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTTTAAAATTTAATAA
Found at i:70226525 original size:19 final size:19
Alignment explanation
Indices: 70226501--70226561 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
70226491 GTTTAGAACA
70226501 TTTATAACTATAATTAGAT
1 TTTATAACTATAATTAGAT
* * *
70226520 TTTATAA-TTTAA-AACA-
1 TTTATAACTATAATTAGAT
70226536 TTTATAACTATAATTAGAT
1 TTTATAACTATAATTAGAT
70226555 TTTATAA
1 TTTATAA
70226562 TTTAAATATA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
16 7 0.21
17 6 0.18
18 6 0.18
19 14 0.42
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (19 bp):
TTTATAACTATAATTAGAT
Found at i:70226536 original size:35 final size:35
Alignment explanation
Indices: 70226486--70226567 Score: 146
Period size: 35 Copynumber: 2.3 Consensus size: 35
70226476 GATAATTTAA
* *
70226486 TTATAGTTTAGAACATTTATAACTATAATTAGATT
1 TTATAATTTAAAACATTTATAACTATAATTAGATT
70226521 TTATAATTTAAAACATTTATAACTATAATTAGATT
1 TTATAATTTAAAACATTTATAACTATAATTAGATT
70226556 TTATAATTTAAA
1 TTATAATTTAAA
70226568 TATATTTTTA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 45 1.00
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (35 bp):
TTATAATTTAAAACATTTATAACTATAATTAGATT
Found at i:70226574 original size:18 final size:18
Alignment explanation
Indices: 70226518--70226575 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
70226508 CTATAATTAG
70226518 ATTTTATAATTTAAA-AC
1 ATTTTATAATTTAAATAC
* * *
70226535 A-TTTATAACTATAATTAG
1 ATTTTATAA-TTTAAATAC
*
70226553 ATTTTATAATTTAAATAT
1 ATTTTATAATTTAAATAC
70226571 ATTTT
1 ATTTT
70226576 TATATTTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
16 7 0.22
17 5 0.16
18 13 0.41
19 7 0.22
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (18 bp):
ATTTTATAATTTAAATAC
Found at i:70226797 original size:12 final size:12
Alignment explanation
Indices: 70226780--70226804 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70226770 TATTAAACCT
70226780 ATATATATACAC
1 ATATATATACAC
70226792 ATATATATACAC
1 ATATATATACAC
70226804 A
1 A
70226805 CATTTTGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (12 bp):
ATATATATACAC
Found at i:70235146 original size:20 final size:20
Alignment explanation
Indices: 70235108--70235146 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
70235098 TTGCACCTCC
*
70235108 TTTTCTTTTATTCTTTTTCT
1 TTTTCTTTTATTCTATTTCT
70235128 TTTTCTTTT-TTCTGATTTC
1 TTTTCTTTTATTCT-ATTTC
70235147 ATCGTTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.77
Consensus pattern (20 bp):
TTTTCTTTTATTCTATTTCT
Found at i:70238800 original size:17 final size:18
Alignment explanation
Indices: 70238763--70238798 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
70238753 CTCACATTTT
70238763 CAACCCTAATCCTAAACC
1 CAACCCTAATCCTAAACC
70238781 CAACCCT-ATCCTTAAACC
1 CAACCCTAATCC-TAAACC
70238799 AAATATCCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.36, C:0.44, G:0.00, T:0.19
Consensus pattern (18 bp):
CAACCCTAATCCTAAACC
Found at i:70241098 original size:16 final size:16
Alignment explanation
Indices: 70241073--70241112 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
70241063 ATAAGCACCA
*
70241073 GCACAAAGCCTGCTAG
1 GCACATAGCCTGCTAG
*
70241089 GCACATAGCCTGTTAG
1 GCACATAGCCTGCTAG
70241105 GCACATAG
1 GCACATAG
70241113 TCTGAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.25, T:0.17
Consensus pattern (16 bp):
GCACATAGCCTGCTAG
Found at i:70241099 original size:39 final size:39
Alignment explanation
Indices: 70241004--70241100 Score: 124
Period size: 39 Copynumber: 2.5 Consensus size: 39
70240994 AGTATATAGT
* * *
70241004 CTGCTAGGCACATAGCCCGAATAGTCACCGGCATAAAGC
1 CTGCTAGGCACATAGCCTGAATAGTCACCAGCACAAAGC
* * *
70241043 TTGCTAAGTACATAGCCTGAATAAG-CACCAGCACAAAGC
1 CTGCTAGGCACATAGCCTGAAT-AGTCACCAGCACAAAGC
70241082 CTGCTAGGCACATAGCCTG
1 CTGCTAGGCACATAGCCTG
70241101 TTAGGCACAT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
39 46 0.96
40 2 0.04
ACGTcount: A:0.32, C:0.29, G:0.22, T:0.18
Consensus pattern (39 bp):
CTGCTAGGCACATAGCCTGAATAGTCACCAGCACAAAGC
Found at i:70241131 original size:39 final size:39
Alignment explanation
Indices: 70241088--70241204 Score: 162
Period size: 39 Copynumber: 3.0 Consensus size: 39
70241078 AAGCCTGCTA
* * * * *
70241088 GGCACATAGCCTGTTAGGCACATAGTCTGAATAATCATC
1 GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
*
70241127 GGCACAAAGCCTACTAGGCACATAGCCCGAATAATCACC
1 GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
* *
70241166 GGCACAAAGCCTGCTAGGCACATAGCCCAAATAGTCACC
1 GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
70241205 ATATTTTTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.17
Consensus pattern (39 bp):
GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
Found at i:70241171 original size:94 final size:94
Alignment explanation
Indices: 70240999--70241192 Score: 262
Period size: 94 Copynumber: 2.1 Consensus size: 94
70240989 ACACCAGTAT
* * * * * * *
70240999 ATAGTCTGCTAGGCACATAGCCCGAATAGTCACCGGCATAAAGCTTGCTAAGTACATAGCCTGAA
1 ATAGCCTGCTAGGCACATAGCCCGAATAATCACCGGCACAAAGCCTACTAAGCACATAGCCCGAA
70241064 TAAGCACCAGCACAAAGCCTGCTAGGCAC
66 TAAGCACCAGCACAAAGCCTGCTAGGCAC
* * * * *
70241093 ATAGCCTGTTAGGCACATAGTCTGAATAATCATCGGCACAAAGCCTACTAGGCACATAGCCCGAA
1 ATAGCCTGCTAGGCACATAGCCCGAATAATCACCGGCACAAAGCCTACTAAGCACATAGCCCGAA
* *
70241158 TAATCACCGGCACAAAGCCTGCTAGGCAC
66 TAAGCACCAGCACAAAGCCTGCTAGGCAC
70241187 ATAGCC
1 ATAGCC
70241193 CAAATAGTCA
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
94 86 1.00
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.18
Consensus pattern (94 bp):
ATAGCCTGCTAGGCACATAGCCCGAATAATCACCGGCACAAAGCCTACTAAGCACATAGCCCGAA
TAAGCACCAGCACAAAGCCTGCTAGGCAC
Found at i:70246938 original size:12 final size:12
Alignment explanation
Indices: 70246921--70246946 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70246911 GAGTATGTAC
70246921 CATTAATATTAT
1 CATTAATATTAT
70246933 CATTAATATTAT
1 CATTAATATTAT
70246945 CA
1 CA
70246947 AAATCTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (12 bp):
CATTAATATTAT
Found at i:70251139 original size:27 final size:27
Alignment explanation
Indices: 70251104--70251158 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
70251094 TTTTATTGTC
70251104 TAAGCCGCATTTATCATATAGGTTTTG
1 TAAGCCGCATTTATCATATAGGTTTTG
70251131 TAAGCCGCATTTATCATATAGGTTTTG
1 TAAGCCGCATTTATCATATAGGTTTTG
70251158 T
1 T
70251159 GCATCGGTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (27 bp):
TAAGCCGCATTTATCATATAGGTTTTG
Found at i:70254239 original size:3 final size:3
Alignment explanation
Indices: 70254231--70254258 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
70254221 CCTATCATCC
70254231 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
70254259 ATTTCCTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:70254473 original size:22 final size:23
Alignment explanation
Indices: 70254430--70254482 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
70254420 GACCATTGTT
** *
70254430 TTTTTTTTCCCCCATTTTTTCCC
1 TTTTTTTTCCCCCATTAATTCCA
70254453 TTTTTTTT-CCCCATTAATTCCA
1 TTTTTTTTCCCCCATTAATTCCA
*
70254475 TTATTTTT
1 TTTTTTTT
70254483 ACTAGTGATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 18 0.69
23 8 0.31
ACGTcount: A:0.11, C:0.26, G:0.00, T:0.62
Consensus pattern (23 bp):
TTTTTTTTCCCCCATTAATTCCA
Found at i:70257764 original size:41 final size:41
Alignment explanation
Indices: 70257719--70257800 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
70257709 TCAGCTACTG
70257719 TTATGAAATTTCATTTTGTTTGTTTTAGGTCAGATTTTATA
1 TTATGAAATTTCATTTTGTTTGTTTTAGGTCAGATTTTATA
*
70257760 TTATGAAATTTCATTTTGTTTGTTTTAGGTCGGATTTTATA
1 TTATGAAATTTCATTTTGTTTGTTTTAGGTCAGATTTTATA
70257801 CAAGGAAAGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.23, C:0.05, G:0.16, T:0.56
Consensus pattern (41 bp):
TTATGAAATTTCATTTTGTTTGTTTTAGGTCAGATTTTATA
Found at i:70261363 original size:105 final size:105
Alignment explanation
Indices: 70261217--70261637 Score: 440
Period size: 104 Copynumber: 4.0 Consensus size: 105
70261207 ATATTTTTAT
* * * * * *
70261217 ATATAATATATTGATTGATGCACACTT-CAAGGAGGGAATGATTTTTGAAGTTCTAGATATTGTT
1 ATATAATATATTGGTAGATGCACA-TTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTT
* * * *
70261281 AACACAATGGGAAATCAAGGCATCGAGCCTGATGTTGTCAC
65 GACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC
* * * *
70261322 ATATAGTATATTGGTAGATGCATATTGCAAGAAGGGAATGATTTCTAAAGCTGAAGATATTGTTG
1 ATATAATATATTGGTAGATGCACATTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTTG
** * *
70261387 ACAGTATGAAAAAGCTAGGCATTGAGCCTGATGTTGTCAC
66 ACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC
* * * * * *
70261427 ATATAACATATTGGTTA-ATGCGCATTGCAAGGAGGGAATGGTTCCT-AAGCTGAAGATATTGTT
1 ATATAATATATTGG-TAGATGCACATTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTT
* * *
70261490 GACACGATGAGAAAGCAAGGTATTGAGCCTG-TCGTTGACAC
65 GACACAATGAGAAAGCAAGGCATTGAGCCTGAT-GTTGTCAC
* * * * * * *
70261531 -TCATAGTATATTGGTTGATGCACATTGAAAGAAGGGGATGGTTT-TGAAGCACCAGATATTGTT
1 AT-ATAATATATTGGTAGATGCACATTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTT
* *
70261594 GACACAATGAGAAAGCAAGGCATTGAGCCTAAAGTTGTCAC
65 GACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC
70261635 ATA
1 ATA
70261638 CAACACTCTT
Statistics
Matches: 261, Mismatches: 47, Indels: 17
0.80 0.14 0.05
Matches are distributed among these distances:
103 4 0.02
104 134 0.51
105 121 0.46
106 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (105 bp):
ATATAATATATTGGTAGATGCACATTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTTG
ACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC
Found at i:70269374 original size:48 final size:48
Alignment explanation
Indices: 70269256--70269480 Score: 308
Period size: 48 Copynumber: 4.7 Consensus size: 48
70269246 ATGTGTAACC
* * * * *
70269256 GTGTAAGACCATATTTGGGATATGACATCGGCATTGTTATGTG-GCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
* * *
70269303 GTGTAAGACCATGTTTGGGACATGGCATTGACATTGTTACGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
* *
70269351 ATGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTACGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
* * *
70269399 GTGTAATACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
* *
70269447 GTGAAAGACCATGTCTAGGACATGGCATCGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAT
70269481 GAGGCATCGT
Statistics
Matches: 158, Mismatches: 19, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
47 37 0.23
48 121 0.77
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
Found at i:70273090 original size:19 final size:20
Alignment explanation
Indices: 70273058--70273097 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
70273048 ATCTTTTCTG
70273058 AGTATTCTGAGTATATATTC
1 AGTATTCTGAGTATATATTC
70273078 AGTATTC-GAGTATATATTC
1 AGTATTCTGAGTATATATTC
70273097 A
1 A
70273098 TTCATCCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (20 bp):
AGTATTCTGAGTATATATTC
Found at i:70273362 original size:44 final size:44
Alignment explanation
Indices: 70273299--70273387 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
70273289 ATTTTACTAG
70273299 ATGTTGTTCTATCTATATAAATAATTGGAATGTGTCTTAATACA
1 ATGTTGTTCTATCTATATAAATAATTGGAATGTGTCTTAATACA
*
70273343 ATGTTGTTCTGTCTATATAAATAATTGGAATGTGTCTTAATACA
1 ATGTTGTTCTATCTATATAAATAATTGGAATGTGTCTTAATACA
70273387 A
1 A
70273388 GAATGTAAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.43
Consensus pattern (44 bp):
ATGTTGTTCTATCTATATAAATAATTGGAATGTGTCTTAATACA
Found at i:70273378 original size:23 final size:23
Alignment explanation
Indices: 70273310--70273379 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
70273300 TGTTGTTCTA
70273310 TCTATATAAATAATTGGAATGTG
1 TCTATATAAATAATTGGAATGTG
* * *
70273333 TCT-TAATACAAT-GTT-G-TTCTG
1 TCTAT-ATA-AATAATTGGAATGTG
70273354 TCTATATAAATAATTGGAATGTG
1 TCTATATAAATAATTGGAATGTG
70273377 TCT
1 TCT
70273380 TAATACAAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
20 3 0.09
21 11 0.31
22 4 0.11
23 14 0.40
24 3 0.09
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.43
Consensus pattern (23 bp):
TCTATATAAATAATTGGAATGTG
Found at i:70275383 original size:48 final size:48
Alignment explanation
Indices: 70275318--70275587 Score: 387
Period size: 48 Copynumber: 5.6 Consensus size: 48
70275308 ATGTGTAACT
* * * *
70275318 GTGTAAGACCATATCTGGGATATGGCATCAGCTTTGCTATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
70275366 GTGTAAGACCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
* * * * *
70275414 GTGTAACACCCATGTCTAGGACATGGTATCGGCATTGTTACGTGAGCCA
1 GTGTAAGA-CCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
* * * *
70275463 GTGTAATACCATGTCTGGGACATGGCATCGGCATCGTTACGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
* *
70275511 GTGTAAGACCATATCTGGGACATGGCATCAGCATCGTTATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
*
70275559 GAGTAAGACCATGTCTGGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
70275588 GGATGAGGCA
Statistics
Matches: 202, Mismatches: 19, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
48 159 0.79
49 43 0.21
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
Found at i:70275474 original size:97 final size:96
Alignment explanation
Indices: 70275318--70275587 Score: 360
Period size: 97 Copynumber: 2.8 Consensus size: 96
70275308 ATGTGTAACT
* * * * * * *
70275318 GTGTAAGACCATATCTGGGATATGGCATCAGCTTTGCTATGTGAGCCAGTGTAAGACCATGTCTG
1 GTGTAACACCATATCTAGGACATGGCATCAGCATCGTTACGTGAGCCAGTGTAAGACCATGTCTG
* *
70275383 GGACATGGCATCAGCATTGTTATGTGAGCCA
66 GGACATGGCATCAGCATCGTTACGTGAGCCA
* * * * *
70275414 GTGTAACACCCATGTCTAGGACATGGTATCGGCATTGTTACGTGAGCCAGTGTAATACCATGTCT
1 GTGTAACA-CCATATCTAGGACATGGCATCAGCATCGTTACGTGAGCCAGTGTAAGACCATGTCT
*
70275479 GGGACATGGCATCGGCATCGTTACGTGAGCCA
65 GGGACATGGCATCAGCATCGTTACGTGAGCCA
* * * *
70275511 GTGTAAGACCATATCTGGGACATGGCATCAGCATCGTTATGTGAGCCAGAGTAAGACCATGTCTG
1 GTGTAACACCATATCTAGGACATGGCATCAGCATCGTTACGTGAGCCAGTGTAAGACCATGTCTG
70275576 GGACATGGCATC
66 GGACATGGCATC
70275588 GGATGAGGCA
Statistics
Matches: 151, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
96 68 0.45
97 83 0.55
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (96 bp):
GTGTAACACCATATCTAGGACATGGCATCAGCATCGTTACGTGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCAGCATCGTTACGTGAGCCA
Found at i:70275520 original size:145 final size:144
Alignment explanation
Indices: 70275318--70275589 Score: 409
Period size: 145 Copynumber: 1.9 Consensus size: 144
70275308 ATGTGTAACT
* * * * *
70275318 GTGTAAGACCATATCTGGGATATGGCATCAGCTTTGCTATGTGAGCCAGTGTAAGACCATGTCTG
1 GTGTAAGACCATATCTGGGACATGGCATCAGCATCGCTACGTGAGCCAGTGTAAGACCATATCTG
* * *
70275383 GGACATGGCATCAGCATTGTTATGTGAGCCAGTGTAACACCCATGTCTAGGACATGGTATCGGCA
66 GGACATGGCATCAGCATCGTTATGTGAGCCAGAGTAACA-CCATGTCTAGGACATGGCATCGGCA
70275448 TTGTTACGTGAGCCA
130 TTGTTACGTGAGCCA
* * * *
70275463 GTGTAATACCATGTCTGGGACATGGCATCGGCATCGTTACGTGAGCCAGTGTAAGACCATATCTG
1 GTGTAAGACCATATCTGGGACATGGCATCAGCATCGCTACGTGAGCCAGTGTAAGACCATATCTG
* *
70275528 GGACATGGCATCAGCATCGTTATGTGAGCCAGAGTAAGACCATGTCTGGGACATGGCATCGG
66 GGACATGGCATCAGCATCGTTATGTGAGCCAGAGTAACACCATGTCTAGGACATGGCATCGG
70275590 ATGAGGCATC
Statistics
Matches: 113, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
144 21 0.19
145 92 0.81
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (144 bp):
GTGTAAGACCATATCTGGGACATGGCATCAGCATCGCTACGTGAGCCAGTGTAAGACCATATCTG
GGACATGGCATCAGCATCGTTATGTGAGCCAGAGTAACACCATGTCTAGGACATGGCATCGGCAT
TGTTACGTGAGCCA
Found at i:70275618 original size:41 final size:43
Alignment explanation
Indices: 70275561--70275671 Score: 104
Period size: 44 Copynumber: 2.6 Consensus size: 43
70275551 GTGAGCCAGA
*
70275561 GTAAGACCAT-GTCTGGGACATGGCATCG-GATGAG-GCATCGT
1 GTAAGACCATAG-CTGGGACATGGCATCGAGATGAGAGCATCAT
* ***
70275602 GTAAGACCATAGCTGGG-CTATTGGCATCGATATGAGATTTTCAT
1 GTAAGACCATAGCTGGGAC-A-TGGCATCGAGATGAGAGCATCAT
* *
70275646 GTAAGACCATATCTGGGACATCGCAT
1 GTAAGACCATAGCTGGGACATGGCAT
70275672 TGGTACGATA
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
40 1 0.02
41 16 0.28
42 9 0.16
43 10 0.18
44 20 0.35
45 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (43 bp):
GTAAGACCATAGCTGGGACATGGCATCGAGATGAGAGCATCAT
Found at i:70279456 original size:131 final size:131
Alignment explanation
Indices: 70279222--70279523 Score: 347
Period size: 131 Copynumber: 2.3 Consensus size: 131
70279212 AATGATTGGA
* * * * * *
70279222 AAATCAGGTAACACAAATGAGATTGTTCATGATATTGAATAGAATGAACTTAGGTTGTGATATTA
1 AAATCAGCTAACTCAAATAAGATTGTTCATGATATTAAATAGAATGAACTTAGGTTGTCAAATTA
* * * * * ** **
70279287 AATTAATGAACTTTAATGATATCAGCTGCGATATTAAATTAGTGAGCTGTTTGGTGTAGCGATAT
66 AATTAATGAACCTTAACGATATCAACTACGATATTAAATCAACGAGCTGTTTGAAGTAGCGATAT
70279352 T
131 T
* *
70279353 AAATCAGCTAACTCAAATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTG-CAAATTT
1 AAATCAGCTAACTCAAATAAGATTGTTCATGATATTAAATAGAATGAACTTAGGTTGTCAAATTA
* ** * *
70279417 AATTCA-GCAAACCTTGCCGATATCAACTACGATCTTAAATCAACGAGCTGTTTGAAGTAGTGAT
66 AATTAATG--AACCTTAACGATATCAACTACGATATTAAATCAACGAGCTGTTTGAAGTAGCGAT
*
70279481 CTT
129 ATT
*
70279484 AAATCATCTAACTCAAATAAGATTGTTCATGATATATAAA
1 AAATCAGCTAACTCAAATAAGATTGTTCATGATAT-TAAA
70279524 GTAAAATATA
Statistics
Matches: 144, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
129 1 0.01
130 9 0.06
131 130 0.90
132 4 0.03
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.33
Consensus pattern (131 bp):
AAATCAGCTAACTCAAATAAGATTGTTCATGATATTAAATAGAATGAACTTAGGTTGTCAAATTA
AATTAATGAACCTTAACGATATCAACTACGATATTAAATCAACGAGCTGTTTGAAGTAGCGATAT
T
Found at i:70283026 original size:39 final size:40
Alignment explanation
Indices: 70282973--70283063 Score: 103
Period size: 39 Copynumber: 2.2 Consensus size: 40
70282963 AAAATTTATA
* * *
70282973 TTTAATACAATAAAATATATATTATATATAT-TTGTGTTT
1 TTTAATATAATAAAACATATATTATATATATGTAGTGTTT
* * *
70283012 TTTAATATAGTAAAACATTTATTATATTTATGGTAGTGTTT
1 TTTAATATAATAAAACATATATTATATATAT-GTAGTGTTT
70283053 TATTAATATAA
1 T-TTAATATAA
70283064 ATACTTTTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
39 26 0.62
41 8 0.19
42 8 0.19
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.51
Consensus pattern (40 bp):
TTTAATATAATAAAACATATATTATATATATGTAGTGTTT
Found at i:70300813 original size:105 final size:105
Alignment explanation
Indices: 70300642--70300847 Score: 290
Period size: 105 Copynumber: 2.0 Consensus size: 105
70300632 TCACGTATAA
* * *
70300642 TATATTGATAGATGCACATTGCAAGAAGAGGATGATTTCTGAAGCTGTAGATACTGTTGATGCAA
1 TATATTGATAGATGCACATTGCAAGAAGAGGATGATTTCTAAAGCTGAAGATACTGTTGATACAA
*
70300707 TGAGAAAGCAAGGCATTGAACCTAATGTTGTCACATTCAG
66 TGAGAAAGAAAGGCATTGAACCTAATGTTGTCACATTCAG
* * * *
70300747 TATATTGGTTGATGCACATTGC-A-AAGAGGGAATGGTTTCTAAAGCTGAAGATATTGTTGATAC
1 TATATTGATAGATGCACATTGCAAGAAGA-GG-ATGATTTCTAAAGCTGAAGATACTGTTGATAC
* *
70300810 AATGAGAAAGAAAGGCATTGAGCCTGATGTTGTCACAT
64 AATGAGAAAGAAAGGCATTGAACCTAATGTTGTCACAT
70300848 ATAATGCATT
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
103 4 0.04
104 3 0.03
105 82 0.92
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (105 bp):
TATATTGATAGATGCACATTGCAAGAAGAGGATGATTTCTAAAGCTGAAGATACTGTTGATACAA
TGAGAAAGAAAGGCATTGAACCTAATGTTGTCACATTCAG
Found at i:70310347 original size:41 final size:41
Alignment explanation
Indices: 70310290--70310367 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 41
70310280 ATAGTGATAT
*
70310290 TCGGGCTTTGAGCCTAGCAAGCTT-TATGCTGGTGAATGTAA
1 TCGGGCTTTGAGCCTAGCAAGCTTAT-TGCCGGTGAATGTAA
*
70310331 TCGGGCTTT-ATGCCTAGCAGGCTTATTGCCGGTGAAT
1 TCGGGCTTTGA-GCCTAGCAAGCTTATTGCCGGTGAAT
70310368 AGTATCAGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 1 0.03
41 31 0.94
42 1 0.03
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.32
Consensus pattern (41 bp):
TCGGGCTTTGAGCCTAGCAAGCTTATTGCCGGTGAATGTAA
Found at i:70310607 original size:50 final size:50
Alignment explanation
Indices: 70310539--70310724 Score: 205
Period size: 50 Copynumber: 3.7 Consensus size: 50
70310529 ATTCGACCAC
* * *
70310539 ATAGGTATGTACATATGTGATGTTATATTGGATTTTGAATATTCGGCCAT
1 ATAGGTATGCACATATGTGATGTTATATTTGATTTTGAATATTCCGCCAT
* * * *
70310589 GA-AGGTATGCACAAATGTGATATTATATTTGAATTTGTATATTCCGCCAT
1 -ATAGGTATGCACATATGTGATGTTATATTTGATTTTGAATATTCCGCCAT
* * * * * * *
70310639 ATAAGTAAT-TACATATTTGATGTTAAATTTGATCTTGCATATTCTGCCAT
1 ATAGGT-ATGCACATATGTGATGTTATATTTGATTTTGAATATTCCGCCAT
*
70310689 ATAGGTATGCACATATGTGATCTTATATTTGATTTT
1 ATAGGTATGCACATATGTGATGTTATATTTGATTTT
70310725 CTATAATCGA
Statistics
Matches: 109, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
49 3 0.03
50 103 0.94
51 3 0.03
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.42
Consensus pattern (50 bp):
ATAGGTATGCACATATGTGATGTTATATTTGATTTTGAATATTCCGCCAT
Found at i:70310699 original size:100 final size:100
Alignment explanation
Indices: 70310548--70310729 Score: 258
Period size: 100 Copynumber: 1.8 Consensus size: 100
70310538 CATAGGTATG
* *
70310548 TACATATGTGATGTTATATTGGATTTTGAATATTCGGCCATGAAGGTATGCACAAATGTGATATT
1 TACATATGTGATGTTAAATTGGATCTTGAATATTCGGCCATGAAGGTATGCACAAATGTGATATT
*
70310613 ATATTTGAATTTGTATATTCCGCCATATAAGTAAT
66 ATATTTGAATTTCTATATTCCGCCATATAAGTAAT
* * * * * *
70310648 TACATATTTGATGTTAAATTTGATCTTGCATATTCTGCCAT-ATAGGTATGCACATATGTGATCT
1 TACATATGTGATGTTAAATTGGATCTTGAATATTCGGCCATGA-AGGTATGCACAAATGTGATAT
*
70310712 TATATTTGATTTTCTATA
65 TATATTTGAATTTCTATA
70310730 ATCGACCAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 1 0.01
100 70 0.99
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (100 bp):
TACATATGTGATGTTAAATTGGATCTTGAATATTCGGCCATGAAGGTATGCACAAATGTGATATT
ATATTTGAATTTCTATATTCCGCCATATAAGTAAT
Found at i:70313440 original size:13 final size:11
Alignment explanation
Indices: 70313404--70313434 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
70313394 CCGCCCGTAT
70313404 TAATTTTTATA
1 TAATTTTTATA
*
70313415 TTATTTTTATA
1 TAATTTTTATA
70313426 TAATTTTTA
1 TAATTTTTA
70313435 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:70313590 original size:30 final size:30
Alignment explanation
Indices: 70313556--70313618 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
70313546 ACTTAACAAG
* *
70313556 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAAAAAAATTAA
*
70313586 CAAATACCTTTAAAATAATAAAAAAATTAA
1 CAAATACCTCTAAAATAATAAAAAAATTAA
70313616 CAA
1 CAA
70313619 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.60, C:0.14, G:0.02, T:0.24
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAAAAAAATTAA
Found at i:70319497 original size:31 final size:31
Alignment explanation
Indices: 70319430--70319497 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
70319420 TAATGCCTTG
* * *
70319430 ATTATTAATACCATTATTATTTAGTTTAATT
1 ATTATTAATACAATTATTAATTAGATTAATT
*
70319461 ATTATTATTACAATTATTAATTA-ATTAAGTT
1 ATTATTAATACAATTATTAATTAGATTAA-TT
*
70319492 TTTATT
1 ATTATT
70319498 CTATCTTAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.37, C:0.04, G:0.03, T:0.56
Consensus pattern (31 bp):
ATTATTAATACAATTATTAATTAGATTAATT
Found at i:70320389 original size:18 final size:18
Alignment explanation
Indices: 70320366--70320401 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
70320356 CTATATTAAG
70320366 AAAACAAAAAATTTGAGA
1 AAAACAAAAAATTTGAGA
70320384 AAAACAAAAAATTTGAGA
1 AAAACAAAAAATTTGAGA
70320402 TTATTCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.06, G:0.11, T:0.17
Consensus pattern (18 bp):
AAAACAAAAAATTTGAGA
Found at i:70322143 original size:32 final size:32
Alignment explanation
Indices: 70322106--70322196 Score: 94
Period size: 33 Copynumber: 2.8 Consensus size: 32
70322096 ACAACTTGAA
*
70322106 AAAGGTTATGTACACTTTGTGTGTACAGT-TGG
1 AAAGGTTATGTATACTTTGTGTGTACA-TATGG
* * * *
70322138 TAAGGTTAGGTATATTTTGTGTATACCATATGG
1 AAAGGTTATGTATACTTTGTGTGTA-CATATGG
**
70322171 AAAGGAAATGTATACTTTGTGTGTAC
1 AAAGGTTATGTATACTTTGTGTGTAC
70322197 CACTTGAAAA
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
32 22 0.48
33 24 0.52
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (32 bp):
AAAGGTTATGTATACTTTGTGTGTACATATGG
Found at i:70322190 original size:33 final size:32
Alignment explanation
Indices: 70322147--70322214 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
70322137 GTAAGGTTAG
* *
70322147 GTATATTTTGTGTATACCA-TATGGAAAGGAAAT
1 GTATACTTTGTGTATACCACT-TGAAAAGG-AAT
*
70322180 GTATACTTTGTGTGTACCACTTGAAAAGGAAT
1 GTATACTTTGTGTATACCACTTGAAAAGGAAT
70322212 GTA
1 GTA
70322215 CACCTCAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 6 0.19
33 24 0.77
34 1 0.03
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (32 bp):
GTATACTTTGTGTATACCACTTGAAAAGGAAT
Found at i:70323306 original size:15 final size:15
Alignment explanation
Indices: 70323286--70323316 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
70323276 AAAAGGAAAG
70323286 AATTTCTAGAATTAA
1 AATTTCTAGAATTAA
70323301 AATTTCTAGAATTAA
1 AATTTCTAGAATTAA
70323316 A
1 A
70323317 GTAGGGGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTTCTAGAATTAA
Found at i:70328803 original size:33 final size:33
Alignment explanation
Indices: 70328764--70328829 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
70328754 TGGTAAGGTT
* *
70328764 AGGTATATTTTGTGTATACCA-TATGAAAAGGAA
1 AGGTATACTTTGTGCATACCACT-TGAAAAGGAA
*
70328797 AGGTATACTTTGTGCGTACCACTTGAAAAGGAA
1 AGGTATACTTTGTGCATACCACTTGAAAAGGAA
70328830 TGTACACCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (33 bp):
AGGTATACTTTGTGCATACCACTTGAAAAGGAA
Found at i:70335236 original size:22 final size:21
Alignment explanation
Indices: 70335196--70335256 Score: 54
Period size: 22 Copynumber: 3.0 Consensus size: 21
70335186 TTAGTCATAT
* * *
70335196 AATAAATTATTAATATAATTA
1 AATAATTTATTATTTTAATTA
70335217 ACATAATTTATTATTTTAA-TA
1 A-ATAATTTATTATTTTAATTA
* *
70335238 AAT-ATTTAATATTTCAATT
1 AATAATTTATTATTTTAATT
70335257 TTATTTTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
19 12 0.36
20 3 0.09
21 4 0.12
22 14 0.42
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (21 bp):
AATAATTTATTATTTTAATTA
Found at i:70335275 original size:13 final size:14
Alignment explanation
Indices: 70335259--70335300 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
70335249 TTTCAATTTT
70335259 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
70335272 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
70335287 ATTTTAAATAATAT
1 ATTTT-AATAATAT
70335301 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:70335285 original size:16 final size:16
Alignment explanation
Indices: 70335263--70335299 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
70335253 AATTTTATTT
70335263 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
70335280 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
70335295 TAATA
1 TAATA
70335300 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:70335352 original size:15 final size:15
Alignment explanation
Indices: 70335332--70335388 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
70335322 ATTCAATATT
70335332 AATATTTTAATAATA
1 AATATTTTAATAATA
*
70335347 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
70335366 AATATATTAATAATA
1 AATATTTTAATAATA
70335381 AATATTTT
1 AATATTTT
70335389 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:70338553 original size:20 final size:21
Alignment explanation
Indices: 70338514--70338555 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
70338504 AGATGAATTC
* *
70338514 ATTATGTTATTTTTCTTTTAA
1 ATTATGTAATTTTTCATTTAA
70338535 ATTATGTAATTTTT-ATTTAA
1 ATTATGTAATTTTTCATTTAA
70338555 A
1 A
70338556 AGGTTTAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (21 bp):
ATTATGTAATTTTTCATTTAA
Found at i:70340214 original size:31 final size:31
Alignment explanation
Indices: 70340137--70340219 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 31
70340127 CAAGAATTGA
* *
70340137 ATTAAATCAAAATTTCATGTATACAGTTGCAC
1 ATTAAATC-AAAGTTCATGTATACAATTGCAC
* *
70340169 A--AAATCAAAGTTCATGTATACAATTGTAT
1 ATTAAATCAAAGTTCATGTATACAATTGCAC
70340198 ATTAAATCATAA-TTCATGTATA
1 ATTAAATCA-AAGTTCATGTATA
70340220 ATTTTGAGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
29 20 0.45
30 5 0.11
31 16 0.36
32 3 0.07
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.36
Consensus pattern (31 bp):
ATTAAATCAAAGTTCATGTATACAATTGCAC
Found at i:70343974 original size:25 final size:26
Alignment explanation
Indices: 70343937--70343990 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
70343927 ATACCCCTTT
70343937 TCACCTATTCATTCAACACAACTCTC
1 TCACCTATTCATTCAACACAACTCTC
* **
70343963 TCACCT-TTCATTCCACACTTCTCTC
1 TCACCTATTCATTCAACACAACTCTC
70343988 TCA
1 TCA
70343991 TTTTCTCTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.35
Consensus pattern (26 bp):
TCACCTATTCATTCAACACAACTCTC
Found at i:70348565 original size:24 final size:24
Alignment explanation
Indices: 70348518--70348608 Score: 107
Period size: 24 Copynumber: 3.8 Consensus size: 24
70348508 CTATATAATG
*
70348518 GGAAGCTCA-TAAGAGCCATAATCA
1 GGAAGCTCACAAAGAGCCAT-ATCA
* *
70348542 GGAAGTTCACAAAGAACCATATCA
1 GGAAGCTCACAAAGAGCCATATCA
*
70348566 GGAAGCTCACGAAGAGCC-TATC-
1 GGAAGCTCACAAAGAGCCATATCA
70348588 GAGAAGCTCACAAAGAGCCAT
1 G-GAAGCTCACAAAGAGCCAT
70348609 GTAACAGGAA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
22 1 0.02
23 20 0.35
24 28 0.49
25 8 0.14
ACGTcount: A:0.41, C:0.23, G:0.22, T:0.14
Consensus pattern (24 bp):
GGAAGCTCACAAAGAGCCATATCA
Found at i:70348603 original size:47 final size:48
Alignment explanation
Indices: 70348518--70348608 Score: 116
Period size: 47 Copynumber: 1.9 Consensus size: 48
70348508 CTATATAATG
* *
70348518 GGAAGCTCATAAGAGCCATAATCAGGAAGTTCACAAAGAACCATATCA
1 GGAAGCTCAGAAGAGCCATAATCAGGAAGCTCACAAAGAACCATATCA
*
70348566 GGAAGCTCACGAAGAGCC-T-ATC-GAGAAGCTCACAAAGAGCCAT
1 GGAAGCTCA-GAAGAGCCATAATCAG-GAAGCTCACAAAGAACCAT
70348609 GTAACAGGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
46 1 0.03
47 20 0.53
48 10 0.26
49 7 0.18
ACGTcount: A:0.41, C:0.23, G:0.22, T:0.14
Consensus pattern (48 bp):
GGAAGCTCAGAAGAGCCATAATCAGGAAGCTCACAAAGAACCATATCA
Found at i:70348617 original size:49 final size:48
Alignment explanation
Indices: 70348518--70348621 Score: 115
Period size: 47 Copynumber: 2.1 Consensus size: 48
70348508 CTATATAATG
* * *
70348518 GGAAGCTCATAAGAGCCATAATCAGGAAGTTCACAAAGAACCATATCA
1 GGAAGCTCAGAAGAGCCATAATCAGGAAGCTCACAAAGAACCATAACA
*
70348566 GGAAGCTCACGAAGAGCC-T-ATC-GAGAAGCTCACAAAGAGCCATGTAACA
1 GGAAGCTCA-GAAGAGCCATAATCAG-GAAGCTCACAAAGAACCA--TAACA
70348615 GGAAGCT
1 GGAAGCT
70348622 TCGGATAGCA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.40
48 10 0.21
49 18 0.38
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.14
Consensus pattern (48 bp):
GGAAGCTCAGAAGAGCCATAATCAGGAAGCTCACAAAGAACCATAACA
Found at i:70351380 original size:24 final size:24
Alignment explanation
Indices: 70351353--70351403 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 24
70351343 TTTACGACAT
70351353 AGACAACTTCAAAGCT-TTCCAAAG
1 AGACAACTTCAAAG-TGTTCCAAAG
70351377 AGACAACTTCAAAGTGTTCCAAAG
1 AGACAACTTCAAAGTGTTCCAAAG
70351401 AGA
1 AGA
70351404 TCTTCACTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.20
Consensus pattern (24 bp):
AGACAACTTCAAAGTGTTCCAAAG
Found at i:70360445 original size:37 final size:37
Alignment explanation
Indices: 70360386--70360531 Score: 202
Period size: 37 Copynumber: 3.9 Consensus size: 37
70360376 AGCTCGGATG
* *
70360386 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
*
70360423 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
* * * * *
70360460 TAATCTCCACACGTAGTCATCGAGTCTGAGCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
* *
70360497 TAATCTCCACACATAGTCATCGGGTCTTACCCAGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGA
70360532 ATATATTTCC
Statistics
Matches: 97, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
Found at i:70360793 original size:98 final size:96
Alignment explanation
Indices: 70360677--70360873 Score: 299
Period size: 98 Copynumber: 2.0 Consensus size: 96
70360667 GCACATCGCC
*
70360677 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
70360742 -GACCATTCAGCTTTACCAC-ATATGCATATCTCA
64 AG-CCATTCAGCTTTACCACAATATGCATAT-TCA
*
70360775 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
**
70360840 CCATTTGGCTTTACCACATATATGCATATTCA
66 CCATTCAGCTTTACCACA-ATATGCATATTCA
70360872 TA
1 TA
70360874 TTCACCACAT
Statistics
Matches: 92, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
96 30 0.33
97 6 0.07
98 56 0.61
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCAGCTTTACCACAATATGCATATTCA
Found at i:70360803 original size:48 final size:48
Alignment explanation
Indices: 70360677--70360861 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
70360667 GCACATCGCC
*
70360677 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
70360727 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
70360775 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
70360823 TACATATTTCACATTAGCCATTTGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
70360862 TGCATATTCA
Statistics
Matches: 125, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
48 82 0.66
49 2 0.02
50 41 0.33
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:70360911 original size:47 final size:47
Alignment explanation
Indices: 70360831--70361071 Score: 347
Period size: 47 Copynumber: 5.1 Consensus size: 47
70360821 CATACATATT
* * * * * *
70360831 TCACATTAGCCATTTGGCTTTACCACATATATGCATATTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
70360878 CCACATTGGCTATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
70360925 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
70360972 TCACATTGGCCATTCGGCCTTATCACATAGATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
70361019 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
70361066 TCACAT
1 TCACAT
70361072 AAAATCCTAA
Statistics
Matches: 174, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 174 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:70360951 original size:22 final size:22
Alignment explanation
Indices: 70360924--70361042 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
70360914 GCTCACATTC
70360924 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
70360946 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
70360970 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
70360993 ATCACATAGATG-CATGTTC-ACATT
1 ATCACATTG--GCCA--TTCGGCCTT
70361017 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
70361040 ATC
1 ATC
70361043 TCATATATAC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 24 0.34
23 13 0.18
24 13 0.18
25 21 0.30
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:70369794 original size:39 final size:39
Alignment explanation
Indices: 70369738--70370008 Score: 422
Period size: 39 Copynumber: 7.0 Consensus size: 39
70369728 AATTATATTA
* * **
70369738 CCAGCACAAAGCTTGCGGGACTTTAGCTTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
70369777 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
70369816 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
70369855 CCAGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
** *
70369894 CCAAAACGAAG-C--CAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
70369930 CCAGCACGAAGCCTGCAGGACTTTAGGCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
70369969 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
70370008 C
1 C
70370009 TAATGTCTTG
Statistics
Matches: 213, Mismatches: 16, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
36 31 0.15
37 1 0.00
38 1 0.00
39 180 0.85
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:70380001 original size:27 final size:26
Alignment explanation
Indices: 70379971--70380023 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 26
70379961 GAAAAAAGTC
70379971 TTTCTTAAAGAACCTCTTAAGCATTTT
1 TTTCTTAAAGAACCTCTTAAGC-TTTT
70379998 TTTCTTAAAGAACCTCTTAAGCTTTT
1 TTTCTTAAAGAACCTCTTAAGCTTTT
70380024 CTTCAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.28, C:0.19, G:0.08, T:0.45
Consensus pattern (26 bp):
TTTCTTAAAGAACCTCTTAAGCTTTT
Found at i:70380033 original size:27 final size:27
Alignment explanation
Indices: 70379976--70380033 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
70379966 AAGTCTTTCT
* *
70379976 TAAAGAACCTCTTAAGCATTTTTTTCT
1 TAAAGAACCTCTTAAGCATTTTCTTCA
70380003 TAAAGAACCTCTTAAGC-TTTTCTTCAA
1 TAAAGAACCTCTTAAGCATTTTCTTC-A
70380030 TAAA
1 TAAA
70380034 ACTCTCATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.40
Consensus pattern (27 bp):
TAAAGAACCTCTTAAGCATTTTCTTCA
Found at i:70382353 original size:19 final size:19
Alignment explanation
Indices: 70382326--70382363 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
70382316 ACTAATCTCG
*
70382326 ATACGTATTTCTATACTCA
1 ATACATATTTCTATACTCA
70382345 ATACATATTTCTATACTCA
1 ATACATATTTCTATACTCA
70382364 GTAGTGCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (19 bp):
ATACATATTTCTATACTCA
Found at i:70389542 original size:16 final size:15
Alignment explanation
Indices: 70389518--70389547 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
70389508 AACTGTTTTA
70389518 TTACAAATTTCACTC
1 TTACAAATTTCACTC
70389533 TTACATAATTTCACT
1 TTACA-AATTTCACT
70389548 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:70389875 original size:50 final size:50
Alignment explanation
Indices: 70389757--70390034 Score: 294
Period size: 50 Copynumber: 5.6 Consensus size: 50
70389747 ATCTAGTACG
* * * * *
70389757 CATAGTAGCTTGCACTTAGTACTACACATGCGACC-AACAATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
70389806 C--AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
* * ** * * * *
70389854 CGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAACTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACCATCTGATACA
* * * * *
70389905 CATAATAGCCTGCACTTAGTACTACATATGCT-ACCTAACCATCTGGTATA
1 CATAGTAGCCTGCACTTAGTACTACACACG-TGACCTAACCATCTGATACA
* * *
70389955 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATCTGATACA
*
70390007 CATAGTAGCCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
70390035 TGTGTTCTCA
Statistics
Matches: 189, Mismatches: 32, Indels: 13
0.81 0.14 0.06
Matches are distributed among these distances:
47 29 0.15
48 13 0.07
49 2 0.01
50 71 0.38
51 37 0.20
52 37 0.20
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
Found at i:70391180 original size:10 final size:11
Alignment explanation
Indices: 70391156--70391184 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
70391146 AAAAATTGGC
70391156 TTTTAATTTAT
1 TTTTAATTTAT
70391167 TTTTAATTTA-
1 TTTTAATTTAT
70391177 TTTTAATT
1 TTTTAATT
70391185 AGTAGATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.44
11 10 0.56
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTTAATTTAT
Found at i:70398567 original size:15 final size:15
Alignment explanation
Indices: 70398524--70398567 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
70398514 TGGTGAAAGG
* *
70398524 AAAATTCAATATCAA
1 AAAAATCAATATTAA
*
70398539 AAAAAT-AATTTTAA
1 AAAAATCAATATTAA
70398553 AAAAATCAATATTAA
1 AAAAATCAATATTAA
70398568 GTTTACTTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAATCAATATTAA
Found at i:70400440 original size:6 final size:6
Alignment explanation
Indices: 70400405--70400437 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
70400395 TATTTCTTTA
*
70400405 TTTCTT TTTCTT TTTCTT TTTCTT TTTATT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
70400438 ATTAAAAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:70401179 original size:19 final size:18
Alignment explanation
Indices: 70401141--70401179 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
70401131 TCACCAATCC
*
70401141 TACTTTGTACACGATATT
1 TACTTTGTACACCATATT
*
70401159 TACTTTGTACAACCTTATT
1 TACTTTGTAC-ACCATATT
70401178 TA
1 TA
70401180 ACAGATACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.28, C:0.18, G:0.08, T:0.46
Consensus pattern (18 bp):
TACTTTGTACACCATATT
Found at i:70401322 original size:80 final size:80
Alignment explanation
Indices: 70401219--70401380 Score: 306
Period size: 80 Copynumber: 2.0 Consensus size: 80
70401209 CTAATACATT
*
70401219 CACTTACCCCAAGTCCTCACTCACAAATCACAATAACTCTCCAATAAAGTGCCTAAAATAAAAGT
1 CACTTACCCCAAATCCTCACTCACAAATCACAATAACTCTCCAATAAAGTGCCTAAAATAAAAGT
70401284 GCAAAAATATTCACA
66 GCAAAAATATTCACA
*
70401299 CACTTACCCCAAATCCTCACTCACAAATCACAATAACTCTCCAATAAAGTGCCTAATATAAAAGT
1 CACTTACCCCAAATCCTCACTCACAAATCACAATAACTCTCCAATAAAGTGCCTAAAATAAAAGT
70401364 GCAAAAATATTCACA
66 GCAAAAATATTCACA
70401379 CA
1 CA
70401381 TTTAAGCGTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.44, C:0.29, G:0.06, T:0.22
Consensus pattern (80 bp):
CACTTACCCCAAATCCTCACTCACAAATCACAATAACTCTCCAATAAAGTGCCTAAAATAAAAGT
GCAAAAATATTCACA
Found at i:70402393 original size:109 final size:109
Alignment explanation
Indices: 70402194--70402410 Score: 355
Period size: 108 Copynumber: 2.0 Consensus size: 109
70402184 AACTCATGCA
* *
70402194 TTGAAATTTTAAAAGGTTATTCGGTCATTTGGGTCAAACGAAACAAATCGAAACCCAGTACGTAG
1 TTGAAATTTTAAAAGGTTATTCGGTCATTTGGGTCAAACGAAACAAATCGAAACCCAGCACGTAA
* * *
70402259 GGCACAATCTTTCGAATCTCCAAAAAAGGGAATATTGCCTTTAT
66 GGCACAATCTTTCGAATCCCCAAAAAACGAAATATTGCCTTTAT
* *
70402303 TTGAAATTTTAAAAGGTTGTTCGGTTATTTGGGTCAAACGAAA-AAATCGAAACCCAGCACGTAA
1 TTGAAATTTTAAAAGGTTATTCGGTCATTTGGGTCAAACGAAACAAATCGAAACCCAGCACGTAA
*
70402367 GGCACGATCTTTCGAATCCCCAAAAAACGAAATATTGCCTTTAT
66 GGCACAATCTTTCGAATCCCCAAAAAACGAAATATTGCCTTTAT
70402411 GTTTAAAAAT
Statistics
Matches: 100, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
108 59 0.59
109 41 0.41
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (109 bp):
TTGAAATTTTAAAAGGTTATTCGGTCATTTGGGTCAAACGAAACAAATCGAAACCCAGCACGTAA
GGCACAATCTTTCGAATCCCCAAAAAACGAAATATTGCCTTTAT
Found at i:70404585 original size:22 final size:21
Alignment explanation
Indices: 70404560--70404607 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
70404550 TGTTCAATCA
70404560 CTGTTCTATATTGTTTCTGCCT
1 CTGTTCTATATTGTTT-TGCCT
* *
70404582 CTGTTCTGTATTGTTTTGCTT
1 CTGTTCTATATTGTTTTGCCT
70404603 CTGTT
1 CTGTT
70404608 TCGCCTCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.06, C:0.19, G:0.17, T:0.58
Consensus pattern (21 bp):
CTGTTCTATATTGTTTTGCCT
Found at i:70410645 original size:5 final size:5
Alignment explanation
Indices: 70410635--70410660 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
70410625 CTGTGTGTTC
70410635 TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T
70410661 ACAAAAACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:70433159 original size:64 final size:64
Alignment explanation
Indices: 70433085--70433218 Score: 196
Period size: 64 Copynumber: 2.1 Consensus size: 64
70433075 TTATTGTTTA
* *
70433085 GTCTGGTTCATCTGATGACAAAGATTTGTATATTTCTATAGATGAAACCAAGTTTTGTTTGAAT
1 GTCTGGTTCATCTAATGACAAAGATTTGTATATTTCAATAGATGAAACCAAGTTTTGTTTGAAT
* * * * * *
70433149 GTCTGGTTCATCTAATGACAAAGATTTTTATGTTTCAATTGATTAAACTAAGTTTTGTTTGATT
1 GTCTGGTTCATCTAATGACAAAGATTTGTATATTTCAATAGATGAAACCAAGTTTTGTTTGAAT
70433213 GTCTGG
1 GTCTGG
70433219 ATTGTAGCAG
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (64 bp):
GTCTGGTTCATCTAATGACAAAGATTTGTATATTTCAATAGATGAAACCAAGTTTTGTTTGAAT
Found at i:70434287 original size:153 final size:150
Alignment explanation
Indices: 70434007--70434288 Score: 381
Period size: 153 Copynumber: 1.9 Consensus size: 150
70433997 TCTGAGTAAA
* *
70434007 ATAGCTTGTGTGTGCTTGCAGCTGCTAGCTTTCAGTTGACTGGATAGGCAATTCTAATCCTGTAA
1 ATAGCTTGTGTGTACATGCAGCTGCTAGCTTTCAGTTGACTGGATAGGCAATTCTAATCCTGTAA
*
70434072 AAAAAGAGCCAAATCTTGTGTTTGCAAAAGGTGCACAAGGGGAGCAATTAGGGGATTGGGAGGGG
66 AAAAAGAGCAAAATCTTGTGTTTGCAAAAGGTGCACAAGGGGAGCAATTAGGGGATTGGGAGGGG
70434137 CCCCATGTCCCCTAAACATG
131 CCCCATGTCCCCTAAACATG
* * * * * *
70434157 ATAGCTTGTGTGTACATGCAGTTGCTAGGTTTTAGTTGATTGGGATAGGCGATTCTAATCCCTCT
1 ATAGCTTGTGTGTACATGCAGCTGCTAGCTTTCAGTTGACT-GGATAGGCAATTCTAAT-CCT-G
* * *
70434222 TAAAAGAAA-AGGAAAAT-TTGGTGTTTGCAAAAGGTGCAGAAGGGGAGCAATT-GGGTGATTTG
63 TAAAA-AAAGAGCAAAATCTT-GTGTTTGCAAAAGGTGCACAAGGGGAGCAATTAGGG-GATTGG
70434284 GAGGG
125 GAGGG
70434289 CTTATATTTC
Statistics
Matches: 114, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
150 35 0.31
151 16 0.14
152 8 0.07
153 52 0.46
154 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (150 bp):
ATAGCTTGTGTGTACATGCAGCTGCTAGCTTTCAGTTGACTGGATAGGCAATTCTAATCCTGTAA
AAAAAGAGCAAAATCTTGTGTTTGCAAAAGGTGCACAAGGGGAGCAATTAGGGGATTGGGAGGGG
CCCCATGTCCCCTAAACATG
Found at i:70437728 original size:16 final size:16
Alignment explanation
Indices: 70437707--70437741 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
70437697 CCCTTTTTTT
70437707 TTTTATCTTATTTCAA
1 TTTTATCTTATTTCAA
* *
70437723 TTTTATTTTATTTTAA
1 TTTTATCTTATTTCAA
70437739 TTT
1 TTT
70437742 ATAAATAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTATCTTATTTCAA
Found at i:70438054 original size:15 final size:16
Alignment explanation
Indices: 70438030--70438074 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
70438020 TACGAATAAT
*
70438030 AATTTGAATATTA-TA
1 AATTTAAATATTATTA
70438045 AATTTAAATATTATTTA
1 AATTTAAATATTA-TTA
70438062 AATTTATAATATT
1 AATTTA-AATATT
70438075 CAAATTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
AATTTAAATATTATTA
Found at i:70438072 original size:18 final size:18
Alignment explanation
Indices: 70438038--70438074 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
70438028 ATAATTTGAA
70438038 TATTATAAATTTAAATAT
1 TATTATAAATTTAAATAT
70438056 TATT-TAAATTTATAATAT
1 TATTATAAATTTA-AATAT
70438074 T
1 T
70438075 CAAATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TATTATAAATTTAAATAT
Found at i:70441243 original size:25 final size:25
Alignment explanation
Indices: 70441209--70441259 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
70441199 CAAGTGATTG
70441209 TCCATAAGTTGAATGTGTTCCCAGA
1 TCCATAAGTTGAATGTGTTCCCAGA
70441234 TCCATAAGTTGAATGTGTTCCCAGA
1 TCCATAAGTTGAATGTGTTCCCAGA
70441259 T
1 T
70441260 ACAAAACTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (25 bp):
TCCATAAGTTGAATGTGTTCCCAGA
Found at i:70445183 original size:16 final size:19
Alignment explanation
Indices: 70445164--70445202 Score: 57
Period size: 16 Copynumber: 2.2 Consensus size: 19
70445154 TTACAAAGAT
70445164 AAAAAATC-T-GTG-AGGA
1 AAAAAATCTTAGTGAAGGA
70445180 AAAAAATCTTAGTGAAGGA
1 AAAAAATCTTAGTGAAGGA
70445199 AAAA
1 AAAA
70445203 GAATACACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 8 0.40
17 1 0.05
18 3 0.15
19 8 0.40
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.18
Consensus pattern (19 bp):
AAAAAATCTTAGTGAAGGA
Found at i:70455780 original size:3 final size:3
Alignment explanation
Indices: 70455772--70455801 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
70455762 ACCGGACTGC
70455772 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
70455802 TATTTGTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:70457198 original size:18 final size:18
Alignment explanation
Indices: 70457175--70457210 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
70457165 TCCAGTAGCA
70457175 GCATCAATTGGGGGAAAT
1 GCATCAATTGGGGGAAAT
70457193 GCATCAATTGGGGGAAAT
1 GCATCAATTGGGGGAAAT
70457211 AGTCAACACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.33, T:0.22
Consensus pattern (18 bp):
GCATCAATTGGGGGAAAT
Found at i:70461680 original size:15 final size:15
Alignment explanation
Indices: 70461643--70461681 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
70461633 AAATATTATA
70461643 AAAGAG-GAAAAAAT
1 AAAGAGAGAAAAAAT
*
70461657 AAA-ATAGAAAAAAT
1 AAAGAGAGAAAAAAT
70461671 AAAGAGAGAAA
1 AAAGAGAGAAA
70461682 TAATGTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 1 0.05
14 14 0.67
15 6 0.29
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (15 bp):
AAAGAGAGAAAAAAT
Found at i:70463660 original size:15 final size:17
Alignment explanation
Indices: 70463630--70463661 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
70463620 TAAAAAGGAA
70463630 AAAACTAATATTTTTAT
1 AAAACTAATATTTTTAT
70463647 AAAA-TAAT-TTTTTAT
1 AAAACTAATATTTTTAT
70463662 TTTTTTGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
AAAACTAATATTTTTAT
Found at i:70463767 original size:66 final size:64
Alignment explanation
Indices: 70463692--70463818 Score: 157
Period size: 64 Copynumber: 2.0 Consensus size: 64
70463682 AGTGACCGAT
* *
70463692 ACCACTTC-AAAGTTTAAAAAAAAATGATTTTTTGCATTTTTGGGTGTCGATGTTGAAGTGGCCA
1 ACCACTTCAAAACTTT--AAAAAAATGATCTTTTG-ATTTTTGGGTGTCGATGTTGAAGTGGCCA
70463756 GC
63 GC
* * * * *
70463758 ACCAGTTCAAAACTTTAAAAAAATGATCTTTTGTTTTTTTGGTGTTGGTGTTGAAGTGGCC
1 ACCACTTCAAAACTTTAAAAAAATGATCTTTTGATTTTTGGGTGTCGATGTTGAAGTGGCC
70463819 GGTATCGGTT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
64 24 0.45
65 16 0.30
66 7 0.13
67 6 0.11
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (64 bp):
ACCACTTCAAAACTTTAAAAAAATGATCTTTTGATTTTTGGGTGTCGATGTTGAAGTGGCCAGC
Found at i:70463842 original size:64 final size:65
Alignment explanation
Indices: 70463706--70463842 Score: 161
Period size: 64 Copynumber: 2.1 Consensus size: 65
70463696 CTTCAAAGTT
*
70463706 TAAAAAAAAATGATTTTTTGCATTTTTGGGTGTCGATGTTGAAGTGGCCAGCACCAGTTCAAAAC
1 TAAAAAAAAATGATCTTTTGCATTTTTGGGTGTCGATGTTGAAGTGGCCAGCACCAGTTCAAAAC
** * * * * * * * *
70463771 TTTAAAAAAATGATCTTTTG-TTTTTTTGGTGTTGGTGTTGAAGTGGCCGGTATCGGTTCAAAA-
1 TAAAAAAAAATGATCTTTTGCATTTTTGGGTGTCGATGTTGAAGTGGCCAGCACCAGTTCAAAAC
70463834 TAAAAAAAA
1 TAAAAAAAA
70463843 TGGATTGAGG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
63 7 0.12
64 35 0.59
65 17 0.29
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.36
Consensus pattern (65 bp):
TAAAAAAAAATGATCTTTTGCATTTTTGGGTGTCGATGTTGAAGTGGCCAGCACCAGTTCAAAAC
Found at i:70464420 original size:18 final size:17
Alignment explanation
Indices: 70464397--70464444 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
70464387 AATTAATTAT
70464397 ATTAAAATTAAAATTAAA
1 ATTAAAATTAAAA-TAAA
*
70464415 ATTAAAATTAAAATATA
1 ATTAAAATTAAAATAAA
*
70464432 ATTAAAAATAAAA
1 ATTAAAATTAAAA
70464445 AATATATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
ATTAAAATTAAAATAAA
Found at i:70464445 original size:6 final size:6
Alignment explanation
Indices: 70464397--70464444 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
70464387 AATTAATTAT
* *
70464397 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA A-TATA ATTAAA AATAAA
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA
70464444 A
1 A
70464445 AATATATATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
5 4 0.11
6 34 0.89
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
ATTAAA
Found at i:70464445 original size:18 final size:18
Alignment explanation
Indices: 70464373--70464450 Score: 65
Period size: 17 Copynumber: 4.5 Consensus size: 18
70464363 ACACAATTTG
70464373 AAAAATATAA-TAAAAAT
1 AAAAATATAATTAAAAAT
* * *
70464390 -TAATTAT-ATTAAAATT
1 AAAAATATAATTAAAAAT
* *
70464406 AAAATTAAAATT-AAAAT
1 AAAAATATAATTAAAAAT
*
70464423 TAAAATATAATTAAAAAT
1 AAAAATATAATTAAAAAT
70464441 AAAAAATATA
1 -AAAAATATA
70464451 TATTTATTAT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
15 1 0.02
16 11 0.24
17 18 0.39
18 8 0.17
19 8 0.17
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAATATAATTAAAAAT
Found at i:70465167 original size:23 final size:21
Alignment explanation
Indices: 70465141--70465202 Score: 52
Period size: 23 Copynumber: 2.7 Consensus size: 21
70465131 ACTTTTTAAC
70465141 TTTTAATTTTTTTACTAATAAT
1 TTTTAATTTTTTTACTAAT-AT
* *
70465163 ATTTTTATTTGTGTTTGAGTAATAT
1 -TTTTAATTT-T-TTT-ACTAATAT
70465188 TTTTATATTTTTTTA
1 TTTTA-ATTTTTTTA
70465203 ATCTCAAAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
22 1 0.03
23 11 0.34
24 6 0.19
25 9 0.28
26 5 0.16
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (21 bp):
TTTTAATTTTTTTACTAATAT
Found at i:70466075 original size:17 final size:16
Alignment explanation
Indices: 70466037--70466078 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
70466027 ATTATCACTT
* *
70466037 TAAAATTAAAAAAATT
1 TAAAATTTAAAAAATA
70466053 TAAAATTTAAAAAATA
1 TAAAATTTAAAAAATA
70466069 TATAAATTTA
1 TA-AAATTTA
70466079 TTAAAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TAAAATTTAAAAAATA
Found at i:70468554 original size:17 final size:18
Alignment explanation
Indices: 70468518--70468555 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
70468508 ATATTAATTT
*
70468518 ATTATTTGAGTAATTAAA
1 ATTATTTAAGTAATTAAA
*
70468536 ATTATTTAAGTTA-TAAA
1 ATTATTTAAGTAATTAAA
70468553 ATT
1 ATT
70468556 TAACTGGACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (18 bp):
ATTATTTAAGTAATTAAA
Found at i:70468755 original size:18 final size:18
Alignment explanation
Indices: 70468732--70468767 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
70468722 CGCCACTTGG
70468732 CTAGTTCAACCAATTCAA
1 CTAGTTCAACCAATTCAA
*
70468750 CTAGTTCAATCAATTCAA
1 CTAGTTCAACCAATTCAA
70468768 TAAAAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.31
Consensus pattern (18 bp):
CTAGTTCAACCAATTCAA
Found at i:70473151 original size:22 final size:23
Alignment explanation
Indices: 70473109--70473151 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
70473099 GGAAGATACC
70473109 AACAACATGAATGTCATAAATAT
1 AACAACATGAATGTCATAAATAT
70473132 AACAACA-GAACTG-CATAAAT
1 AACAACATGAA-TGTCATAAAT
70473152 TAAAGTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.53, C:0.16, G:0.09, T:0.21
Consensus pattern (23 bp):
AACAACATGAATGTCATAAATAT
Found at i:70479125 original size:19 final size:18
Alignment explanation
Indices: 70479101--70479157 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 18
70479091 TAACAAATAA
70479101 TAAATTTTAGAAAAATTAT
1 TAAATTTTA-AAAAATTAT
*
70479120 TAAATTTTAATAAAATTTT
1 TAAATTTTAA-AAAATTAT
*
70479139 TAAAATTTATTAAAAATTA
1 T-AAATTT-TAAAAAATTA
70479158 GATTTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
18 1 0.03
19 17 0.53
20 12 0.38
21 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
TAAATTTTAAAAAATTAT
Done.