Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 214 of 343
Found at i:70479151 original size:10 final size:10
Alignment explanation
Indices: 70479111--70479153 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
70479101 TAAATTTTAG
*
70479111 AAAAATTATT
1 AAAATTTATT
* *
70479121 AAATTTTAAT
1 AAAATTTATT
70479131 AAAATTT-TT
1 AAAATTTATT
70479140 AAAATTTATT
1 AAAATTTATT
70479150 AAAA
1 AAAA
70479154 ATTAGATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 8 0.30
10 19 0.70
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
AAAATTTATT
Found at i:70479211 original size:19 final size:19
Alignment explanation
Indices: 70479102--70479211 Score: 57
Period size: 19 Copynumber: 5.8 Consensus size: 19
70479092 AACAAATAAT
* * *
70479102 AAATTTTAGAAAAATTATT
1 AAATTTTATAAAAATTGTA
* *
70479121 AAATTTTAATAAAATTTTTA
1 AAATTTT-ATAAAAATTGTA
70479141 AAA-TTTATTAAAAATTAG-A
1 AAATTTTA-TAAAAATT-GTA
*** *
70479160 TTTTTTTTATAAAAATCGTA
1 -AAATTTTATAAAAATTGTA
**
70479180 AAA-AATA-AAAAATTGTA
1 AAATTTTATAAAAATTGTA
70479197 AAATTTTATAAAAAT
1 AAATTTTATAAAAAT
70479212 CATAAAAAAA
Statistics
Matches: 65, Mismatches: 18, Indels: 16
0.66 0.18 0.16
Matches are distributed among these distances:
17 12 0.18
18 5 0.08
19 25 0.38
20 19 0.29
21 4 0.06
ACGTcount: A:0.54, C:0.01, G:0.04, T:0.42
Consensus pattern (19 bp):
AAATTTTATAAAAATTGTA
Found at i:70482582 original size:132 final size:131
Alignment explanation
Indices: 70482336--70482706 Score: 449
Period size: 132 Copynumber: 2.8 Consensus size: 131
70482326 CAAGTATTCT
* * * *
70482336 TTTAAAAATTCTTTACAACGAAGACGAGATTCAATATTTGGCAATTCACGGAATAGTGCCCTAAC
1 TTTAAAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAAC
* *
70482401 GTATTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCACGC
66 GTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACGC
70482466 C
131 C
* * * *
70482467 TTTCAAAAATTCTTTAAAACGAAGACGAGGTTTGATGTTTGGCAATTCGCGGAAGCGTGCCCTAA
1 TTT-AAAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAA
* * * *
70482532 CGTGTTGGGTTGCAATTTCGCGTTTGCTCGAAATAATCGAATGTCACTTCAAAATTTCATTCATG
65 CGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACG
*
70482597 TC
130 CC
** * * * * *
70482599 TATT-AAAA-TCCCTAAAACGAAGGCGATATGCGATATTTGGCAATTTGTGGAATCGTGCCCTAA
1 T-TTAAAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAA
** * * * * *
70482662 CGTGTTGGGTCACAATTTCCCATTTGTTTAAAATAATCAAATATC
65 CGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATC
70482707 CCTCAGGTCT
Statistics
Matches: 203, Mismatches: 35, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
130 80 0.39
131 7 0.03
132 114 0.56
133 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32
Consensus pattern (131 bp):
TTTAAAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAAC
GTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACGC
C
Found at i:70483518 original size:19 final size:20
Alignment explanation
Indices: 70483489--70483540 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
70483479 ACACTATATA
70483489 TTTTATAATTTTTTAC-AATT
1 TTTTATAATTTTTT-CTAATT
70483509 TTTTAT-ATTTTTTCTAATT
1 TTTTATAATTTTTTCTAATT
*
70483528 TTTAATAAATTTT
1 TTTTAT-AATTTT
70483541 AATATTTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 1 0.04
19 16 0.57
20 6 0.21
21 5 0.18
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTATAATTTTTTCTAATT
Found at i:70483540 original size:29 final size:29
Alignment explanation
Indices: 70483483--70483547 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
70483473 GTTTCGACAC
* * *
70483483 TATATATTTTATAATTTTTTACAATTTTT
1 TATATTTTTTATAATTTTTAACAAATTTT
* *
70483512 TATATTTTTTCTAATTTTTAATAAATTTT
1 TATATTTTTTATAATTTTTAACAAATTTT
*
70483541 AATATTT
1 TATATTT
70483548 GAATTTTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (29 bp):
TATATTTTTTATAATTTTTAACAAATTTT
Found at i:70483839 original size:89 final size:90
Alignment explanation
Indices: 70483625--70483839 Score: 267
Period size: 88 Copynumber: 2.4 Consensus size: 90
70483615 AAAAGCATAG
* * * *
70483625 GCTTAATTGCTTCTTTTGAAAAAAATTTGA-GAGTTTTTTTAATGCATTTTGAAAGTTCAAGCAC
1 GCTTAATT-CTTTTTTTG-AAAAAGTTTGAGGACTTTTTTTAATGCATTTTAAAAGTTCAAGCAC
* *
70483689 CCAATTAAGTGCAAAAAAAAAGTACGA
64 CCAAATAAGTGCAAAAAAAAAGTAAGA
* * * * *
70483716 GCTTAATTGTTTTTTT-AAAAGGTTTGAGGGCTTTTTTT-ATGCATTTTAAAAGTTTAAGTACCC
1 GCTTAATTCTTTTTTTGAAAAAGTTTGAGGACTTTTTTTAATGCATTTTAAAAGTTCAAGCACCC
*
70483779 AAATGAGTGCAAAAAAAAAG-AAGA
66 AAATAAGTGCAAAAAAAAAGTAAGA
70483803 GCTTAATTACTTTTTTTGAAAAAGTTTGAGGACTTTT
1 GCTTAATT-CTTTTTTTGAAAAAGTTTGAGGACTTTT
70483840 GGCACCTTTA
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
87 11 0.10
88 56 0.53
89 25 0.24
90 6 0.06
91 8 0.08
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.38
Consensus pattern (90 bp):
GCTTAATTCTTTTTTTGAAAAAGTTTGAGGACTTTTTTTAATGCATTTTAAAAGTTCAAGCACCC
AAATAAGTGCAAAAAAAAAGTAAGA
Found at i:70487601 original size:23 final size:23
Alignment explanation
Indices: 70487559--70487616 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
70487549 ATCAAAAGAA
*
70487559 AGATCCAAAA-G-AAAAAAAATG
1 AGATCCAAAAGGTTAAAAAAATG
70487580 AGATCCAAAAGGTTAAAAAAATG
1 AGATCCAAAAGGTTAAAAAAATG
70487603 AGATCCAAAAGGTT
1 AGATCCAAAAGGTT
70487617 CACCTGGATC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
21 10 0.29
22 1 0.03
23 23 0.68
ACGTcount: A:0.57, C:0.10, G:0.17, T:0.16
Consensus pattern (23 bp):
AGATCCAAAAGGTTAAAAAAATG
Found at i:70490108 original size:46 final size:44
Alignment explanation
Indices: 70490058--70490182 Score: 171
Period size: 46 Copynumber: 2.8 Consensus size: 44
70490048 GTGAGACGAG
*
70490058 AGCTAGTGTAAGACTTGTCTGGGACATGCATCAGCCT-CGAGATGTA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATC-GCCTACGAG-T-TA
* *
70490104 AGCTAGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGTTA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGTTA
70490148 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
70490183 GTATCCTATC
Statistics
Matches: 72, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
44 15 0.21
45 17 0.24
46 40 0.56
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (44 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGTTA
Found at i:70493438 original size:7 final size:7
Alignment explanation
Indices: 70493428--70493634 Score: 51
Period size: 7 Copynumber: 29.1 Consensus size: 7
70493418 ATCCCCTATC
70493428 CCTTAAA
1 CCTTAAA
70493435 CCTTAAA
1 CCTTAAA
* *
70493442 TCATAAA
1 CCTTAAA
* *
70493449 ACATAAA
1 CCTTAAA
* *
70493456 ACATAAA
1 CCTTAAA
70493463 CCTTAAA
1 CCTTAAA
**
70493470 CCCTTACC
1 -CCTTAAA
*
70493478 CCTTAAC
1 CCTTAAA
* *
70493485 CCCTAAC
1 CCTTAAA
*
70493492 CCCTAACA
1 CCTTAA-A
70493500 CC-TAAA
1 CCTTAAA
70493506 CCTTAAA
1 CCTTAAA
** *
70493513 CCCCAAT
1 CCTTAAA
70493520 CCTTAAA
1 CCTTAAA
*
70493527 CCATAAA
1 CCTTAAA
* *
70493534 TCATAAA
1 CCTTAAA
* *
70493541 CCATAAT
1 CCTTAAA
*
70493548 CCCTAAA
1 CCTTAAA
* *
70493555 CCCATAAT
1 -CCTTAAA
*
70493563 CCATAAA
1 CCTTAAA
70493570 CCTTAAA
1 CCTTAAA
*
70493577 -ATAGTAATA
1 CCT--TAA-A
*
70493586 TC-TAAA
1 CCTTAAA
*
70493592 CATTAAA
1 CCTTAAA
*
70493599 CCCTAAA
1 CCTTAAA
* *
70493606 CCATATA
1 CCTTAAA
*
70493613 CCCTAAA
1 CCTTAAA
*
70493620 CCCTAAA
1 CCTTAAA
70493627 CCTTAAA
1 CCTTAAA
70493634 C
1 C
70493635 TATAATGATA
Statistics
Matches: 154, Mismatches: 37, Indels: 18
0.74 0.18 0.09
Matches are distributed among these distances:
6 5 0.03
7 133 0.86
8 15 0.10
9 1 0.01
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.23
Consensus pattern (7 bp):
CCTTAAA
Found at i:70493498 original size:14 final size:15
Alignment explanation
Indices: 70493463--70493504 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
70493453 AAAACATAAA
* *
70493463 CCTTAAACCCTTACC
1 CCTTAACCCCTAACC
70493478 CCTTAACCCCTAACC
1 CCTTAACCCCTAACC
*
70493493 CC-TAACACCTAA
1 CCTTAACCCCTAA
70493505 ACCTTAAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.31, C:0.48, G:0.00, T:0.21
Consensus pattern (15 bp):
CCTTAACCCCTAACC
Found at i:70493514 original size:22 final size:23
Alignment explanation
Indices: 70493459--70493533 Score: 61
Period size: 21 Copynumber: 3.5 Consensus size: 23
70493449 ACATAAAACA
* *
70493459 TAAACCTTAAA-CCCTTACCCCT
1 TAAACCTTAAACCCCTAACACCT
* *
70493481 TAACCCCT-AACCCCTAACACC-
1 TAAACCTTAAACCCCTAACACCT
*
70493502 TAAACCTTAAACCCC-AA-TCCT
1 TAAACCTTAAACCCCTAACACCT
*
70493523 TAAACCATAAA
1 TAAACCTTAAA
70493534 TCATAAACCA
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
20 2 0.05
21 20 0.48
22 20 0.48
ACGTcount: A:0.39, C:0.40, G:0.00, T:0.21
Consensus pattern (23 bp):
TAAACCTTAAACCCCTAACACCT
Found at i:70493533 original size:28 final size:29
Alignment explanation
Indices: 70493502--70493571 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 29
70493492 CCCTAACACC
* * *
70493502 TAAACCTTAAACCCCAATCCTTAAA-CCA
1 TAAACCATAAACCACAATCCCTAAACCCA
* *
70493530 TAAATCATAAACCATAATCCCTAAACCCA
1 TAAACCATAAACCACAATCCCTAAACCCA
*
70493559 TAATCCATAAACC
1 TAAACCATAAACC
70493572 TTAAAATAGT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 20 0.59
29 14 0.41
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (29 bp):
TAAACCATAAACCACAATCCCTAAACCCA
Found at i:70493540 original size:14 final size:14
Alignment explanation
Indices: 70493517--70493571 Score: 67
Period size: 14 Copynumber: 3.9 Consensus size: 14
70493507 CTTAAACCCC
*
70493517 AATCCTTAAACCAT
1 AATCCATAAACCAT
70493531 AAAT-CATAAACCAT
1 -AATCCATAAACCAT
*
70493545 AATCCCTAAACCCAT
1 AATCCATAAA-CCAT
70493560 AATCCATAAACC
1 AATCCATAAACC
70493572 TTAAAATAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
13 3 0.09
14 16 0.46
15 16 0.46
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (14 bp):
AATCCATAAACCAT
Found at i:70493561 original size:15 final size:15
Alignment explanation
Indices: 70493517--70493571 Score: 62
Period size: 15 Copynumber: 3.8 Consensus size: 15
70493507 CTTAAACCCC
*
70493517 AATCCTTAAA-CCAT
1 AATCCATAAACCCAT
70493531 AAAT-CATAAA-CCAT
1 -AATCCATAAACCCAT
*
70493545 AATCCCTAAACCCAT
1 AATCCATAAACCCAT
70493560 AATCCATAAACC
1 AATCCATAAACC
70493572 TTAAAATAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
13 3 0.09
14 14 0.40
15 18 0.51
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (15 bp):
AATCCATAAACCCAT
Found at i:70494094 original size:39 final size:40
Alignment explanation
Indices: 70494021--70494163 Score: 182
Period size: 39 Copynumber: 3.6 Consensus size: 40
70494011 TTTTTGTAGT
* * *
70494021 GTTTTCCAAAAAGCGCCGCTAATGGTCGACCTATAGCGGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
* *
70494061 GTTTTTCAAAAAGC-ACGCTAATGCTTGATCTATAGCGGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
* * * *
70494100 ATTTTTCAAAAAGCGCCGCTAATTCTCAATCTATAGTGGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
*
70494140 -TTTTTTAAAAAGCGCCGCTAATGC
1 GTTTTTCAAAAAGCGCCGCTAATGC
70494164 CACTAAAGCT
Statistics
Matches: 89, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 56 0.63
40 33 0.37
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (40 bp):
GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
Found at i:70494854 original size:17 final size:16
Alignment explanation
Indices: 70494826--70494878 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
70494816 TTTGGTTCGC
70494826 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
70494842 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
70494859 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
70494875 TGTA
1 TGTA
70494879 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:70494943 original size:44 final size:45
Alignment explanation
Indices: 70494859--70494949 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
70494849 GGATTAGAGG
* * *
70494859 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
70494904 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
70494948 TG
1 TG
70494950 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:70495134 original size:18 final size:17
Alignment explanation
Indices: 70495113--70495147 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
70495103 TTATTATTAA
*
70495113 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
70495131 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
70495148 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:70495231 original size:120 final size:120
Alignment explanation
Indices: 70495091--70495357 Score: 453
Period size: 120 Copynumber: 2.2 Consensus size: 120
70495081 ATTTAATCAT
70495091 ATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
* * *
70495156 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
65 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
* *
70495212 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
* *
70495277 TAAATATTCTTATATGAATTTACTAAAATTATAATATATAATAGTATAAAATATA
66 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
*
70495332 ATATAACATAATTATTATTAAATATA
1 ATTTAACATAATTATTATTAAATATA
70495358 ATCAATTTTT
Statistics
Matches: 138, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
120 134 0.97
121 4 0.03
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
Found at i:70495254 original size:18 final size:17
Alignment explanation
Indices: 70495231--70495267 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
70495221 AATTATTATT
70495231 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
70495247 AAATATATGATTTAATA
1 AAATATATGATTTAATA
70495264 AAAT
1 AAAT
70495268 TCTTAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:70495326 original size:61 final size:61
Alignment explanation
Indices: 70495122--70495318 Score: 188
Period size: 61 Copynumber: 3.3 Consensus size: 61
70495112 AATATATTTT
* * *
70495122 AATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCA
1 AATTAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAA
* * * * * * * * * **
70495183 AATCATAATATATGATACT-ATAAAA-T-ATAAT-TTAACATAATTATTAT-TAAATATATTTT
1 AATTAAAATATATAAT-TTAATAAAATTCTTAATATTAA-AT-ATTCTTATATGAATTTACTAA
*
70495242 AATTAAAATATATGATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAA
1 AATTAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAA
*
70495303 AATTATAATATATAAT
1 AATTAAAATATATAAT
70495319 AGTATAAAAT
Statistics
Matches: 103, Mismatches: 25, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
58 3 0.03
59 33 0.32
60 16 0.16
61 46 0.45
62 5 0.05
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.44
Consensus pattern (61 bp):
AATTAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAA
Found at i:70497820 original size:18 final size:18
Alignment explanation
Indices: 70497797--70497831 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
70497787 GTTTCAGACG
70497797 TGAGAAAGAAATGAGAAA
1 TGAGAAAGAAATGAGAAA
70497815 TGAGAAAGAAATGAGAA
1 TGAGAAAGAAATGAGAA
70497832 GACGGCTGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.29, T:0.11
Consensus pattern (18 bp):
TGAGAAAGAAATGAGAAA
Found at i:70499940 original size:20 final size:20
Alignment explanation
Indices: 70499915--70499953 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
70499905 TGTTTTTATA
70499915 AAAATATAC-AAGAAAACTTC
1 AAAATA-ACTAAGAAAACTTC
*
70499935 AAAATACCTAAGAAAACTT
1 AAAATAACTAAGAAAACTT
70499954 TAAATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.59, C:0.15, G:0.05, T:0.21
Consensus pattern (20 bp):
AAAATAACTAAGAAAACTTC
Found at i:70502063 original size:24 final size:24
Alignment explanation
Indices: 70502036--70502105 Score: 61
Period size: 25 Copynumber: 2.8 Consensus size: 24
70502026 ATAAACATAA
*
70502036 AAAAATGTTAAAATAATTATATAT
1 AAAAATGTTAAAATAAATATATAT
* *
70502060 -AAAATGTAATAAATAAAAATATGTAT
1 AAAAATGT--TAAA-ATAAATATATAT
*
70502086 AAAAATATTAAAATTAAATA
1 AAAAATGTTAAAA-TAAATA
70502106 ATTTAAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
23 7 0.19
24 1 0.03
25 13 0.36
26 9 0.25
27 6 0.17
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (24 bp):
AAAAATGTTAAAATAAATATATAT
Found at i:70508924 original size:85 final size:85
Alignment explanation
Indices: 70508759--70508924 Score: 210
Period size: 85 Copynumber: 2.0 Consensus size: 85
70508749 ATGTATTAAT
* * * * *
70508759 AGGAAACGCTAATGGAAAGGTGCAGTGATACAAAGTCTCAAAAGATGGAGGAATCATAGGATAAT
1 AGGAAACGCTAATGCAAAGGTGAAGTGACACAAAGTCTCAAAAGATGGAGAAATCAAAGGATAAT
* *
70508824 ACAAAGAGTACTGAGTGAGG
66 ACAAAAACTACTGAGTGAGG
* *
70508844 AGGAAATGCTAATGCAAAGGTGAAGTGACGCAACA-TCTCAAAAGATGGAGAAATCAAAGGATAA
1 AGGAAACGCTAATGCAAAGGTGAAGTGACACAA-AGTCTCAAAAGATGGAGAAATCAAAGGATAA
*
70508908 TA-AAGAAACTATTGAGT
65 TACAA-AAACTACTGAGT
70508925 TTGAAAAATA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
84 2 0.03
85 66 0.96
86 1 0.01
ACGTcount: A:0.45, C:0.11, G:0.27, T:0.18
Consensus pattern (85 bp):
AGGAAACGCTAATGCAAAGGTGAAGTGACACAAAGTCTCAAAAGATGGAGAAATCAAAGGATAAT
ACAAAAACTACTGAGTGAGG
Found at i:70516301 original size:6 final size:6
Alignment explanation
Indices: 70516290--70516326 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
70516280 ATTGACATAA
* *
70516290 GATTAG GATTAG GATTAG GATTAG GACTAG GAGTAG G
1 GATTAG GATTAG GATTAG GATTAG GATTAG GATTAG G
70516327 TATAGAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.32, C:0.03, G:0.38, T:0.27
Consensus pattern (6 bp):
GATTAG
Found at i:70516812 original size:17 final size:18
Alignment explanation
Indices: 70516780--70516813 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70516770 TTATTGCACA
*
70516780 TTTTGTTTTTGGTATGTT
1 TTTTGTTTTTGCTATGTT
70516798 TTTTGTTTTT-CTATGT
1 TTTTGTTTTTGCTATGT
70516814 AGGCCACTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.06, C:0.03, G:0.18, T:0.74
Consensus pattern (18 bp):
TTTTGTTTTTGCTATGTT
Found at i:70518114 original size:21 final size:22
Alignment explanation
Indices: 70518070--70518121 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
70518060 ATTGAATAAA
**
70518070 ATTATAATAAGATGTTATTTGT
1 ATTATAATAAGATGTTATAAGT
*
70518092 ATTA-AATAAGCTGTTATAAGT
1 ATTATAATAAGATGTTATAAGT
70518113 ATGTATAAT
1 AT-TATAAT
70518122 TGATAATTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 16 0.64
22 6 0.24
23 3 0.12
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.44
Consensus pattern (22 bp):
ATTATAATAAGATGTTATAAGT
Found at i:70518522 original size:42 final size:43
Alignment explanation
Indices: 70518454--70518534 Score: 114
Period size: 42 Copynumber: 1.9 Consensus size: 43
70518444 CTCTCTGTTG
70518454 TGTAGGTTAACTCGGACAAGTAACCAGACACTA-TATGTCTCA
1 TGTAGGTTAACTCGGACAAGTAACCAGACACTATTATGTCTCA
*
70518496 TGTAGGTTAACTC-GA-AAGGGTGACCAGACACTATTATGT
1 TGTAGGTTAACTCGGACAA--GTAACCAGACACTATTATGT
70518535 GATTCACGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
40 2 0.06
41 2 0.06
42 26 0.74
43 5 0.14
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (43 bp):
TGTAGGTTAACTCGGACAAGTAACCAGACACTATTATGTCTCA
Found at i:70518576 original size:46 final size:46
Alignment explanation
Indices: 70518513--70518945 Score: 445
Period size: 46 Copynumber: 9.4 Consensus size: 46
70518503 TAACTCGAAA
* * *
70518513 GGGTGACCAGACACTATTATGTGATTCACGTAGGTTCAACCCTAAC
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
* * * * *
70518559 GAGTGACCAGGCGCTATTATCTGATTCCCTTAGGTTAAACCCTAAC
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
** ** * *
70518605 GAATGACCAGGCGTTATTATCTGATTTGCGTAGATTCAACCCTAAC
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
* * * * * *
70518651 GGGTGACTATGCACTATTATTTGATTCACGTAGGTTAAACCCTAAA
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
* ** * * * *
70518697 GGGTGACTAAACACTATTATCTGATTCACATAGGCTCAACCCTAAT
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
*
70518743 GGGTGA-CTGGACACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
1 GGGTGACCAGG-CACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
* * * * *
70518789 GGGTGACCAAGCACTATTATTTGATTTGCATAGGTTCAACCTTAAC
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
* ** * * *
70518835 GGTTGACCAGAAACTATTATCTGATTTGCATAGGTTCAACCCTAAT
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
* * * * *
70518881 GGGTGACCAGGCGCTATTATCTAATTCGTGTAGGTTTAACCCTAAT
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
*
70518927 GGGTGACCAGACACTATTA
1 GGGTGACCAGGCACTATTA
70518946 CTTTCACCTG
Statistics
Matches: 320, Mismatches: 65, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
46 318 0.99
47 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (46 bp):
GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
Found at i:70518761 original size:138 final size:138
Alignment explanation
Indices: 70518513--70518945 Score: 505
Period size: 138 Copynumber: 3.1 Consensus size: 138
70518503 TAACTCGAAA
* * ** *
70518513 GGGTGACC-AGACACTATTATGTGATTCACGTAGGTTCAACCCTAACGAGTGACCAGGCGCTATT
1 GGGTGACCAAG-CACTATTATTTGATTCACGTAGGTTCAACCCTAACGGGTGACCAAACACTATT
* * * * ** * * *
70518577 ATCTGATTCCCTTAGGTTAAACCCTAACGAATGACCAGGCGTTATTATCTGATTTGCGTAGATTC
65 ATCTGATTCACATAGGTTCAACCCTAATGGGTGACCAGGCGCTATTATCTGATTCGCGTAGGTTC
70518642 AACCCTAAC
130 AACCCTAAC
* * * * *
70518651 GGGTGACTATGCACTATTATTTGATTCACGTAGGTTAAACCCTAAAGGGTGACTAAACACTATTA
1 GGGTGACCAAGCACTATTATTTGATTCACGTAGGTTCAACCCTAACGGGTGACCAAACACTATTA
* * *
70518716 TCTGATTCACATAGGCTCAACCCTAATGGGTGA-CTGGACACTATTATCTGATTCGCGTAGGTTC
66 TCTGATTCACATAGGTTCAACCCTAATGGGTGACCAGG-CGCTATTATCTGATTCGCGTAGGTTC
70518780 AACCCTAAC
130 AACCCTAAC
** * * *
70518789 GGGTGACCAAGCACTATTATTTGATTTGCATAGGTTCAACCTTAACGGTTGACCAGAA-ACTATT
1 GGGTGACCAAGCACTATTATTTGATTCACGTAGGTTCAACCCTAACGGGTGACCA-AACACTATT
** * * *
70518853 ATCTGATTTGCATAGGTTCAACCCTAATGGGTGACCAGGCGCTATTATCTAATTCGTGTAGGTTT
65 ATCTGATTCACATAGGTTCAACCCTAATGGGTGACCAGGCGCTATTATCTGATTCGCGTAGGTTC
*
70518918 AACCCTAAT
130 AACCCTAAC
70518927 GGGTGACC-AGACACTATTA
1 GGGTGACCAAG-CACTATTA
70518946 CTTTCACCTG
Statistics
Matches: 249, Mismatches: 41, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
137 5 0.02
138 238 0.96
139 6 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (138 bp):
GGGTGACCAAGCACTATTATTTGATTCACGTAGGTTCAACCCTAACGGGTGACCAAACACTATTA
TCTGATTCACATAGGTTCAACCCTAATGGGTGACCAGGCGCTATTATCTGATTCGCGTAGGTTCA
ACCCTAAC
Found at i:70526610 original size:26 final size:25
Alignment explanation
Indices: 70526556--70526611 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
70526546 TTTTCCCGGG
* *
70526556 TTTAAACCCAAACCCATTTACCCCT
1 TTTAAACCCAAACCCATTGACCCCA
*
70526581 TTTACAACCCAAACCCGGTTGA-CCCA
1 TTTA-AACCCAAACCC-ATTGACCCCA
70526607 TTTAA
1 TTTAA
70526612 TAACCCCTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 5 0.19
26 18 0.69
27 3 0.12
ACGTcount: A:0.32, C:0.36, G:0.05, T:0.27
Consensus pattern (25 bp):
TTTAAACCCAAACCCATTGACCCCA
Found at i:70526616 original size:27 final size:26
Alignment explanation
Indices: 70526560--70526617 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
70526550 CCCGGGTTTA
* * *
70526560 AACCCAAACCCATTTACCCCTTTTAC
1 AACCCAAACCCATTGACCCATTTAAC
* *
70526586 AACCCAAACCCGGTTGACCCATTTAAT
1 AACCCAAACCC-ATTGACCCATTTAAC
70526613 AACCC
1 AACCC
70526618 CTGAACCTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.33, C:0.40, G:0.05, T:0.22
Consensus pattern (26 bp):
AACCCAAACCCATTGACCCATTTAAC
Found at i:70528508 original size:3 final size:3
Alignment explanation
Indices: 70528500--70528566 Score: 91
Period size: 3 Copynumber: 22.3 Consensus size: 3
70528490 GTCACTTTGC
* * *
70528500 TTA TTA TTA TTA TTC TTA TTA TTC TTA TTA TTA -TA TTTA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
70528545 TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T
70528567 CAGTATCATT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
2 2 0.04
3 52 0.93
4 2 0.04
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:70530655 original size:25 final size:23
Alignment explanation
Indices: 70530603--70530659 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 23
70530593 ATAGCTTGGA
*
70530603 CGAGCAATCCTGTTATAGTCCTCT
1 CGAGC-ATCCTGTTATAGTCCTCG
70530627 CGAGCATCCTGTTATATAGCTCCT-G
1 CGAGCATCCTG-T-TATAG-TCCTCG
70530652 CGAGCATC
1 CGAGCATC
70530660 TTAATCGGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 6 0.21
24 6 0.21
25 13 0.45
26 4 0.14
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (23 bp):
CGAGCATCCTGTTATAGTCCTCG
Found at i:70530916 original size:24 final size:22
Alignment explanation
Indices: 70530887--70530932 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
70530877 CTGATACGCT
70530887 TTATGAGCTTCCTGATTTATACTC
1 TTATGAGCTTCCTG-TTTA-ACTC
*
70530911 TTATGAGTTTCCTGTTTAACTC
1 TTATGAGCTTCCTGTTTAACTC
70530933 GGATAAGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.19
23 4 0.19
24 13 0.62
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.48
Consensus pattern (22 bp):
TTATGAGCTTCCTGTTTAACTC
Found at i:70532278 original size:22 final size:23
Alignment explanation
Indices: 70532253--70532298 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
70532243 CAACCAAACC
70532253 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
70532275 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
70532298 A
1 A
70532299 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:70532304 original size:23 final size:23
Alignment explanation
Indices: 70532260--70532304 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
70532250 ACCAATTCAA
*
70532260 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
70532283 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
70532305 CACATACGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:70542688 original size:12 final size:12
Alignment explanation
Indices: 70542671--70542699 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
70542661 TATTTTACCC
70542671 AATTTCTTCAAT
1 AATTTCTTCAAT
70542683 AATTTCTTCAAT
1 AATTTCTTCAAT
70542695 AATTT
1 AATTT
70542700 TATTTTTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (12 bp):
AATTTCTTCAAT
Found at i:70545570 original size:40 final size:40
Alignment explanation
Indices: 70545515--70545598 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
70545505 TGTATTTTCG
70545515 AAGATTGATCTTCATTCCGGTCACTATCAGTTATGGGTAA
1 AAGATTGATCTTCATTCCGGTCACTATCAGTTATGGGTAA
70545555 AAGATTGATCTTCATTCCGGTCACTATCAGTTATGGGTAA
1 AAGATTGATCTTCATTCCGGTCACTATCAGTTATGGGTAA
70545595 AAGA
1 AAGA
70545599 ATCAGATGTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (40 bp):
AAGATTGATCTTCATTCCGGTCACTATCAGTTATGGGTAA
Found at i:70547180 original size:17 final size:17
Alignment explanation
Indices: 70547150--70547183 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
70547140 TCTGAGATTC
**
70547150 TTAGATTGCGTGGAGTG
1 TTAGATTGAATGGAGTG
70547167 TTAGATTGAATGGAGTG
1 TTAGATTGAATGGAGTG
70547184 CCTGTCTCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.03, G:0.38, T:0.35
Consensus pattern (17 bp):
TTAGATTGAATGGAGTG
Found at i:70554750 original size:17 final size:19
Alignment explanation
Indices: 70554719--70554758 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
70554709 ATAAAAAATA
*
70554719 ATAAAAATATTAATTTA-G
1 ATAAAAATATGAATTTATG
70554737 ATAAAAATA-GAATTTATG
1 ATAAAAATATGAATTTATG
70554755 ATAA
1 ATAA
70554759 TAATTTGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (19 bp):
ATAAAAATATGAATTTATG
Found at i:70566732 original size:90 final size:92
Alignment explanation
Indices: 70566616--70566801 Score: 286
Period size: 90 Copynumber: 2.0 Consensus size: 92
70566606 TAAATGCAGT
* * * * *
70566616 AATTCGCGGAGTGGGGGTATCCTATAGTTATAGTAGATTAATACACAATCTGTACAAGACATAGT
1 AATTCGCAGAGTGAGGGTATCCTATAGTTATAGTAGATTAATACACAATCTGTACAAGAAAAAAT
70566681 TGCTTCTGAATCAC-AA-ACTTGCACA
66 TGCTTCTGAATCACAAATACTTGCACA
* *
70566706 AATTCGCAGAGTGATGGTATCTTATAGTTATAGTAGATTAATACACAATCTGTACAAGAAAAAAT
1 AATTCGCAGAGTGAGGGTATCCTATAGTTATAGTAGATTAATACACAATCTGTACAAGAAAAAAT
70566771 TGCTTCTGAATCACAAAATACTTGCACA
66 TGCTTCTGAATCAC-AAATACTTGCACA
70566799 AAT
1 AAT
70566802 AGCTATCTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
90 72 0.84
92 2 0.02
93 12 0.14
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (92 bp):
AATTCGCAGAGTGAGGGTATCCTATAGTTATAGTAGATTAATACACAATCTGTACAAGAAAAAAT
TGCTTCTGAATCACAAATACTTGCACA
Found at i:70567436 original size:21 final size:20
Alignment explanation
Indices: 70567407--70567445 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
70567397 ACGCCCACGA
70567407 AAAGATCGCTTGGATTTAAG
1 AAAGATCGCTTGGATTTAAG
70567427 AAAGAGTCGCTTGGATTTA
1 AAAGA-TCGCTTGGATTTA
70567446 TCCATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (20 bp):
AAAGATCGCTTGGATTTAAG
Found at i:70567610 original size:15 final size:14
Alignment explanation
Indices: 70567588--70567624 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
70567578 TTTATCATAT
*
70567588 AAATATATAATTTA
1 AAATATATAAATTA
70567602 AATATATATAAATTA
1 AA-ATATATAAATTA
70567617 AAATATAT
1 AAATATAT
70567625 TAATAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATATATAAATTA
Found at i:70567620 original size:16 final size:16
Alignment explanation
Indices: 70567590--70567656 Score: 59
Period size: 16 Copynumber: 4.1 Consensus size: 16
70567580 TATCATATAA
*
70567590 ATATAT-AATTTAAAT
1 ATATATAAATTAAAAT
70567605 ATATATAAATTAAAAT
1 ATATATAAATTAAAAT
*
70567621 ATAT-TAATAATATAGAAT
1 ATATAT-A-AAT-TAAAAT
70567639 AATATATAAA-TAAAAT
1 -ATATATAAATTAAAAT
70567655 AT
1 AT
70567657 GCGTTATATG
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
15 9 0.21
16 18 0.42
17 3 0.07
18 7 0.16
19 5 0.12
20 1 0.02
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (16 bp):
ATATATAAATTAAAAT
Found at i:70571239 original size:30 final size:29
Alignment explanation
Indices: 70571180--70571240 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
70571170 AAGTACGATG
* *
70571180 TTATACATGAATTTTAATTTTATGTAATT
1 TTATACATGAATATTAATTTAATGTAATT
70571209 TTATACATGAAATATTAATTTAAT-TCAATT
1 TTATACATG-AATATTAATTTAATGT-AATT
70571239 TT
1 TT
70571241 TGCAAATCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 10 0.36
30 18 0.64
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (29 bp):
TTATACATGAATATTAATTTAATGTAATT
Found at i:70574101 original size:90 final size:89
Alignment explanation
Indices: 70573973--70574142 Score: 252
Period size: 90 Copynumber: 1.9 Consensus size: 89
70573963 TGGCAACACT
* * *
70573973 ATATCCCAGATATGGTCTTACATGGGATCACCACTCGATGCCAATGCCATGTCCCAGACATGGTC
1 ATATCCCAGATATGGTCTTACAT-GGATAACCAATCGATGCCAATGCCATATCCCAGACATGGTC
70574038 TTACATGGGATCTCAAATTAACGCC
65 TTACATGGGATCTCAAATTAACGCC
* *
70574063 ATATCCCAGATATGGTCTTACAT-GATAACACATATCGATGCCGATGCCATATCCCAGATATGGT
1 ATATCCCAGATATGGTCTTACATGGATAAC-CA-ATCGATGCCAATGCCATATCCCAGACATGGT
*
70574127 CTTATATGGGATCTCA
64 CTTACATGGGATCTCA
70574143 TTAACCTGAA
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
88 5 0.07
89 2 0.03
90 65 0.90
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (89 bp):
ATATCCCAGATATGGTCTTACATGGATAACCAATCGATGCCAATGCCATATCCCAGACATGGTCT
TACATGGGATCTCAAATTAACGCC
Found at i:70576366 original size:66 final size:66
Alignment explanation
Indices: 70576260--70576392 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
70576250 TCATCGATCA
70576260 CAATCATTTGTGCTAATCCTTTCCTACATACTTCTTGATCAAATCTCCAAGTTGAAAGATGCCTT
1 CAATCATTTGTGCTAATCCTTTCCTACATACTTCTTGATCAAATCTCCAAGTTGAAAGATGCCTT
70576325 C
66 C
* *
70576326 CAATCATTTGTGCTAATCCTTTTCTACATGCTTCTTGATCAAATCTCCAAGTTGAAAGATGCCTT
1 CAATCATTTGTGCTAATCCTTTCCTACATACTTCTTGATCAAATCTCCAAGTTGAAAGATGCCTT
70576391 C
66 C
70576392 C
1 C
70576393 CCCTTTCAAC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (66 bp):
CAATCATTTGTGCTAATCCTTTCCTACATACTTCTTGATCAAATCTCCAAGTTGAAAGATGCCTT
C
Found at i:70581393 original size:16 final size:16
Alignment explanation
Indices: 70581372--70581405 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
70581362 ATTGCTATGT
70581372 TCTTTTTAATTTAGAA
1 TCTTTTTAATTTAGAA
70581388 TCTTTTTAATTTAGAA
1 TCTTTTTAATTTAGAA
70581404 TC
1 TC
70581406 CTTAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.56
Consensus pattern (16 bp):
TCTTTTTAATTTAGAA
Found at i:70582538 original size:43 final size:43
Alignment explanation
Indices: 70582401--70582572 Score: 179
Period size: 43 Copynumber: 4.0 Consensus size: 43
70582391 CATATGATTC
* * * * *
70582401 CGATATGTGATTTCGTGAAAGACCACGTCTGAGACGTTGGCAT
1 CGATATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
*
70582444 CGATTTGA-GATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGATAT-ATGATTT-CGTGTAAGACCATGTCTGGGACATTGGCAT
* * *
70582488 C-TTATATGATTTCGTGTAAGACCGTGTCTGGGACAATGGCAT
1 CGATATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
* * * *
70582530 CGATATATGATTACATGTAAAACC-TCGTCTAGGACATTGGCAT
1 CGATATATGATTTCGTGTAAGACCAT-GTCTGGGACATTGGCAT
70582573 TGTACAAACT
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
42 31 0.29
43 50 0.46
44 27 0.25
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
CGATATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
Found at i:70590590 original size:20 final size:19
Alignment explanation
Indices: 70590561--70590598 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
70590551 TTGTTCAGTG
70590561 TTGAAATTTTTGGAGGGAA
1 TTGAAATTTTTGGAGGGAA
70590580 TTGAAATTTTTGGAGGGAA
1 TTGAAATTTTTGGAGGGAA
70590599 AGATTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.37
Consensus pattern (19 bp):
TTGAAATTTTTGGAGGGAA
Found at i:70590826 original size:49 final size:49
Alignment explanation
Indices: 70590764--70590905 Score: 158
Period size: 49 Copynumber: 2.9 Consensus size: 49
70590754 ATCGTATTGC
* *
70590764 AACTCGGGCTCCCAGTTTACGGTGGTTATACAATCATGGGTTCAAGTAT
1 AACTCGGGCTCCCAGTTGACGGTGGTTATACAATCACGGGTTCAAGTAT
* * ** * * *
70590813 AACTAGGGCTCCCAGCTGACGGCAGTTATGCAGTCACGGGTTGAAGTAT
1 AACTCGGGCTCCCAGTTGACGGTGGTTATACAATCACGGGTTCAAGTAT
* * ** *
70590862 AACTCGAGCTCCCAGTTGATGGTGGTTATGTAGTCACGGGTTCA
1 AACTCGGGCTCCCAGTTGACGGTGGTTATACAATCACGGGTTCA
70590906 CATTACATGC
Statistics
Matches: 76, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 76 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (49 bp):
AACTCGGGCTCCCAGTTGACGGTGGTTATACAATCACGGGTTCAAGTAT
Found at i:70593761 original size:40 final size:40
Alignment explanation
Indices: 70593706--70593890 Score: 309
Period size: 40 Copynumber: 4.6 Consensus size: 40
70593696 CGGATGATAA
* * *
70593706 CCGGGCTAAGTCCCGAAGGAATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
70593746 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70593786 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70593826 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70593866 CCGGGCTAAGTCTCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70593891 AGTGAGTAGC
Statistics
Matches: 139, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
40 138 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70598525 original size:15 final size:15
Alignment explanation
Indices: 70598488--70598526 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
70598478 AAATTTCACA
70598488 TTTCATA-TTATGTC
1 TTTCATATTTATGTC
**
70598502 TTTTGTATTTATGTC
1 TTTCATATTTATGTC
70598517 TTTCATATTT
1 TTTCATATTT
70598527 TGCATGCATA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.18, C:0.10, G:0.08, T:0.64
Consensus pattern (15 bp):
TTTCATATTTATGTC
Found at i:70612814 original size:36 final size:37
Alignment explanation
Indices: 70612747--70612818 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 37
70612737 TAATTAAACT
70612747 TAATCACTTTAATATCAAATTTAATCTAATATTAAAA
1 TAATCACTTTAATATCAAATTTAATCTAATATTAAAA
* * * *
70612784 TAATCACTTTATTATTATA-TTAATTTAATATTAAA
1 TAATCACTTTAATATCAAATTTAATCTAATATTAAA
70612819 TCTTATTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 15 0.48
37 16 0.52
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (37 bp):
TAATCACTTTAATATCAAATTTAATCTAATATTAAAA
Found at i:70612905 original size:20 final size:18
Alignment explanation
Indices: 70612858--70612964 Score: 60
Period size: 20 Copynumber: 5.8 Consensus size: 18
70612848 CAAGATAAAC
70612858 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
70612875 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
* *
70612895 ATTAAATTAATATAATAGT
1 ATTAAATTAATAT-TTAAT
* *
70612914 ATGAACATAAATA-TTAA-
1 ATTAA-ATTAATATTTAAT
* *
70612931 ATCAAATTTAATATTAAACT
1 ATTAAA-TTAATATTTAA-T
*
70612951 ATTAAAATAATATT
1 ATTAAATTAATATT
70612965 ATTTTTGGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 20
0.69 0.11 0.20
Matches are distributed among these distances:
16 1 0.01
17 17 0.25
18 7 0.10
19 17 0.25
20 26 0.38
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:70615205 original size:42 final size:42
Alignment explanation
Indices: 70615149--70615246 Score: 151
Period size: 42 Copynumber: 2.3 Consensus size: 42
70615139 ACGGTCAATC
* *
70615149 ACACGCCCATGTGTGAATCCGTGTGACACACACGACCAATAG
1 ACACGCCCGTGTGTGAACCCGTGTGACACACACGACCAATAG
* * *
70615191 ACATGCTCGTGTGTGAACCCGTGTGACACACACGGCCAATAG
1 ACACGCCCGTGTGTGAACCCGTGTGACACACACGACCAATAG
70615233 ACACGCCCGTGTGT
1 ACACGCCCGTGTGT
70615247 CTAAGCCGTG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.27, C:0.31, G:0.24, T:0.18
Consensus pattern (42 bp):
ACACGCCCGTGTGTGAACCCGTGTGACACACACGACCAATAG
Found at i:70616275 original size:23 final size:22
Alignment explanation
Indices: 70616200--70616302 Score: 100
Period size: 23 Copynumber: 4.5 Consensus size: 22
70616190 GCTAATAAAT
* *
70616200 AGTAAGCTCTATTAAGCTAAAAAC
1 AGTAAGCTCT-TTGAGCT-GAAAC
*
70616224 GGTAAGCTCTATTGAGCT-AAAC
1 AGTAAGCTCT-TTGAGCTGAAAC
*
70616246 AGTAAGCTCTTTCGAGCTGAATC
1 AGTAAGCTCTTT-GAGCTGAAAC
**
70616269 AGTAAGCTCCAATGAGCTGAAAC
1 AGTAAGCT-CTTTGAGCTGAAAC
70616292 AGTAAGCTCTT
1 AGTAAGCTCTT
70616303 ACGAGCTGTG
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
21 2 0.03
22 19 0.28
23 28 0.42
24 18 0.27
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (22 bp):
AGTAAGCTCTTTGAGCTGAAAC
Found at i:70621419 original size:105 final size:105
Alignment explanation
Indices: 70621229--70621548 Score: 379
Period size: 105 Copynumber: 3.0 Consensus size: 105
70621219 ATCAATGCAT
* * * * *
70621229 TATAGGTAACAACATCAGGCTCAATGCCTTGATTGCTCATTTTGTCAACAATATCTTCAGCTTCA
1 TATACGTAACAACATTAGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATATCTTCAGCTTCA
*
70621294 AAAACCATCCCCTCCTTACAAAGTGCATCGACCAATATAC
66 AAAACCATCCCCTCCTTACAAAGTGCATCAACCAATATAC
* * * *
70621334 TATACGTGACAACATTAGGCTCAATGCCTTGCTTTATCATTGTCTCAACAATATCTTTAGCTTCA
1 TATACGTAACAACATTAGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATATCTTCAGCTTCA
** * * *
70621399 GGAATCATCCCTTCCTTACAATGTGCATCAACCAATATAC
66 AAAACCATCCCCTCCTTACAAAGTGCATCAACCAATATAC
* *** *
70621439 TATATGTAACAACATTAGGCTCAATGCCTTGCTTTCTCATTGTGTCAATGGTATCTACAGCTTCA
1 TATACGTAACAACATTAGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATATCTTCAGCTTCA
* *** * * * * *
70621504 GAAATTGTCCCCTCCTTGCAATGTGCATCAATCAACATAT
66 AAAACCATCCCCTCCTTACAAAGTGCATCAACCAATATAC
70621544 TATAC
1 TATAC
70621549 ATGAAAATAT
Statistics
Matches: 182, Mismatches: 33, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
105 182 1.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (105 bp):
TATACGTAACAACATTAGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATATCTTCAGCTTCA
AAAACCATCCCCTCCTTACAAAGTGCATCAACCAATATAC
Found at i:70623851 original size:10 final size:10
Alignment explanation
Indices: 70623836--70623865 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
70623826 TATGAAAATG
70623836 CAAATATAGA
1 CAAATATAGA
70623846 CAAATATAGA
1 CAAATATAGA
*
70623856 CAAATTTAGA
1 CAAATATAGA
70623866 GTTTATAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.23
Consensus pattern (10 bp):
CAAATATAGA
Found at i:70629101 original size:65 final size:66
Alignment explanation
Indices: 70629006--70629163 Score: 176
Period size: 65 Copynumber: 2.4 Consensus size: 66
70628996 TTGACTATGT
* * *
70629006 AGGTTGGGCATATGGATTAGCACTTAGCTGTACAGGTTG-GCCATATGCATTAGCAT-TGGCTGA
1 AGGTTGGCCATATGGATTAGCATTTGGCTGTACAGGTTGAGCC-TATGCATTAGCATGTGGCTGA
70629069 GA
65 GA
* * * * * * * *
70629071 AGTTTGGCCGTGTGGATTAGCATTTGGCTGTGCAGTTTGAGCCTATGGATTAGCATGTTGCTGTG
1 AGGTTGGCCATATGGATTAGCATTTGGCTGTACAGGTTGAGCCTATGCATTAGCATGTGGCTGAG
*
70629136 C
66 A
*
70629137 AGGTTGGTCATATGGATTAGCATTTGG
1 AGGTTGGCCATATGGATTAGCATTTGG
70629164 TCGTGCAGGT
Statistics
Matches: 75, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
65 43 0.57
66 32 0.43
ACGTcount: A:0.20, C:0.14, G:0.32, T:0.34
Consensus pattern (66 bp):
AGGTTGGCCATATGGATTAGCATTTGGCTGTACAGGTTGAGCCTATGCATTAGCATGTGGCTGAG
A
Found at i:70629170 original size:33 final size:33
Alignment explanation
Indices: 70629006--70629174 Score: 175
Period size: 33 Copynumber: 5.2 Consensus size: 33
70628996 TTGACTATGT
* * * *
70629006 AGGTTGGGCATATGGATTAGCACTTAGCTGTAC
1 AGGTTGGCCATATGGATTAGCATTTGGCTGTGC
* * *
70629039 AGGTTGGCCATATGCATTAGCA-TTGGCTGAGA
1 AGGTTGGCCATATGGATTAGCATTTGGCTGTGC
* * *
70629071 AGTTTGGCCGTGTGGATTAGCATTTGGCTGTGC
1 AGGTTGGCCATATGGATTAGCATTTGGCTGTGC
*
70629104 AGTTTGAGCC-TATGGATTAGCATGTT-GCTGTGC
1 AGGTTG-GCCATATGGATTAGCAT-TTGGCTGTGC
*
70629137 AGGTTGGTCATATGGATTAGCATTTGG-TCGTGC
1 AGGTTGGCCATATGGATTAGCATTTGGCT-GTGC
70629170 AGGTT
1 AGGTT
70629175 CTGTACGGAC
Statistics
Matches: 115, Mismatches: 15, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
32 29 0.25
33 81 0.70
34 5 0.04
ACGTcount: A:0.20, C:0.14, G:0.33, T:0.34
Consensus pattern (33 bp):
AGGTTGGCCATATGGATTAGCATTTGGCTGTGC
Found at i:70631288 original size:22 final size:21
Alignment explanation
Indices: 70631262--70631305 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
70631252 CCAGCCAATT
70631262 GCTTC-AGCTTTTAGCAAGTGAA
1 GCTTCGAGCTTTT-GCAA-TGAA
70631284 GCTTCGAGCTTTTGCAATGAA
1 GCTTCGAGCTTTTGCAATGAA
70631305 G
1 G
70631306 TGTTGAGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 9 0.43
23 7 0.33
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (21 bp):
GCTTCGAGCTTTTGCAATGAA
Found at i:70632371 original size:105 final size:103
Alignment explanation
Indices: 70632209--70632663 Score: 353
Period size: 105 Copynumber: 4.3 Consensus size: 103
70632199 AGTTCTGTAT
* * * * * * *
70632209 GTGACAAAATTAGGCTCAATGCATTGTTTTCTCATTGTGTCGACAATA-CATTCAGCTTCAGAAA
1 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGGCAACAATATC-TACAGCTTCAGAAA
* * ** *
70632273 CCATCCCATTCTTGCAAAGTGCATTGATAAATATATTATAG
65 CCATCCC-TCCTTGCAAAGCGCATCAAT-AATATATTATAC
* ** * * *
70632314 GTGACAACATCAGGCTCCACACCTTGCTTTCTCATTGTGGCAATAGTATCTACAGCTTTAGAAA-
1 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGGCAACAATATCTACAGCTTCAGAAAC
* *
70632378 TACTCCTCTCCTTGCAATA-CGCATCAACCAATATATTATAC
66 CA-TCC-CTCCTTGCAA-AGCGCATCAA-TAATATATTATAC
* * * * * *
70632419 GTCACAACATCGGGCTCAATGCCTTCCTTTCTCATTGTGTCAACAATATCTTCGGCTTCAGAAAC
1 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGGCAACAATATCTACAGCTTCAGAAAC
* * * *
70632484 CCTCCCCTCCTTGCAATGCGCATCAACTAATGTACTATAC
66 CAT-CCCTCCTTGCAAAGCGCATCAA-TAATATATTATAC
* * * * *
70632524 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGTG-AACTACATCCAAAGATTCAGAAA
1 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTG-GCAACAATATCTACAGCTTCAGAAA
** * * * * *
70632588 TTAGCCTCTCCTTGCACCA-TGCATCAACCAATATATTATAG
65 CCATCC-CTCCTTGCA-AAGCGCATCAA-TAATATATTATAC
** *
70632629 GTGACAACATCAGGCTTGATTCCTTGCTTTCTCAT
1 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCAT
70632664 CGCATTAAAG
Statistics
Matches: 276, Mismatches: 63, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
104 3 0.01
105 268 0.97
106 5 0.02
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (103 bp):
GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGGCAACAATATCTACAGCTTCAGAAAC
CATCCCTCCTTGCAAAGCGCATCAATAATATATTATAC
Found at i:70632598 original size:210 final size:210
Alignment explanation
Indices: 70632220--70632663 Score: 511
Period size: 210 Copynumber: 2.1 Consensus size: 210
70632210 TGACAAAATT
* * * *
70632220 AGGCTCAATGCATTGTTTTCTCATTGTGTCGACAATACATTCAGCTTCAGAAACCATCCCATTCT
1 AGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATACATTCAGCTTCAGAAACCATCCCATCCT
* ** * * *
70632285 TGCAAAGTGCATTGATAAATATATTATAGGTGACAACATCAGGCTCCACACCTTGCTTTCTCATT
66 TGCAAAGCGCATCAATAAATATACTATACGTGACAACATCAGGCTCAACACCTTGCTTTCTCATT
* * * * * * *
70632350 GTGGCAATAGTATCTACAGCTTTAGAAATACTCCTCTCCTTGCAATACGCATCAACCAATATATT
131 GTGGCAATAGCATCCAAAGATTCAGAAATACGCCTCTCCTTGCAACACGCATCAACCAATATATT
70632415 ATACGTCACAACATC
196 ATACGTCACAACATC
* * * * *
70632430 GGGCTCAATGCCTTCCTTTCTCATTGTGTCAACAATATC-TTCGGCTTCAGAAACCCTCCCCTCC
1 AGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATA-CATTCAGCTTCAGAAACCATCCCATCC
* * **
70632494 TTGCAATGCGCATCAACT-AATGTACTATACGTGACAACATCAGGCTCAATGCCTTGCTTTCTCA
65 TTGCAAAGCGCATCAA-TAAATATACTATACGTGACAACATCAGGCTCAACACCTTGCTTTCTCA
* *
70632558 TTGTGTG-AACTA-CATCCAAAGATTCAGAAATTA-GCCTCTCCTTGCACCATGCATCAACCAAT
129 TTGTG-GCAA-TAGCATCCAAAGATTCAGAAA-TACGCCTCTCCTTGCAACACGCATCAACCAAT
* *
70632620 ATATTATAGGTGACAACATC
191 ATATTATACGTCACAACATC
** *
70632640 AGGCTTGATTCCTTGCTTTCTCAT
1 AGGCTCAATGCCTTGCTTTCTCAT
70632664 CGCATTAAAG
Statistics
Matches: 194, Mismatches: 35, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
210 187 0.96
211 7 0.04
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (210 bp):
AGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATACATTCAGCTTCAGAAACCATCCCATCCT
TGCAAAGCGCATCAATAAATATACTATACGTGACAACATCAGGCTCAACACCTTGCTTTCTCATT
GTGGCAATAGCATCCAAAGATTCAGAAATACGCCTCTCCTTGCAACACGCATCAACCAATATATT
ATACGTCACAACATC
Found at i:70632735 original size:210 final size:210
Alignment explanation
Indices: 70632251--70632747 Score: 490
Period size: 210 Copynumber: 2.4 Consensus size: 210
70632241 CATTGTGTCG
* * * * ** * * *
70632251 ACAATA-CATTCAGCTTCAGAAACCATCCCATTCTTGCAAAGTGCATTGATAAATATATTATAGG
1 ACAATATC-TTCAGCTTCAGAAACCCTCCCCTCCTTGCAATGTGCATCAATCAATATGTTATACG
* * * * * *
70632315 TGACAACATCAGGCTCCACACCTTGCTTTCTCATTGTGGCAATAGTATCTACAGCTTTAGAAATA
65 TGACAACATCAGGCTCAACACCTTGCTTTCTCATTGTGGCAATAGCATCCAAAGATTCAGAAATA
* * *
70632380 CTCCTCTCCTTGCAATACGCATCAACCAATATATTATACGTCACAACATCGGGCTCAATGCCTTC
130 CGCCTCTCCTTGCAACACGCATCAACCAATATATTATACGTCACAACATCAGGCTCAATGCCTTC
* **
70632445 CTTTCTCATTGTGTCA
195 CTTTCTCATCGCATCA
* * *
70632461 ACAATATCTTCGGCTTCAGAAACCCTCCCCTCCTTGCAATGCGCATCAA-CTA-ATGTACTATAC
1 ACAATATCTTCAGCTTCAGAAACCCTCCCCTCCTTGCAATGTGCATCAATCAATATGT--TATAC
**
70632524 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGTG-AACTA-CATCCAAAGATTCAGAA
64 GTGACAACATCAGGCTCAACACCTTGCTTTCTCATTGTG-GCAA-TAGCATCCAAAGATTCAGAA
* * * * ** *
70632587 ATTA-GCCTCTCCTTGCACCATGCATCAACCAATATATTATAGGTGACAACATCAGGCTTGATTC
127 A-TACGCCTCTCCTTGCAACACGCATCAACCAATATATTATACGTCACAACATCAGGCTCAATGC
* *
70632651 CTTGCTTTCTCATCGCATTA
191 CTTCCTTTCTCATCGCATCA
***
70632671 A-AGATA-CTTACAGCTTCCA-AAATTGTCCCCTCCTTGCAATGTGCATCAATCAATATGTTATA
1 ACA-ATATCTT-CAGCTT-CAGAAACCCTCCCCTCCTTGCAATGTGCATCAATCAATATGTTATA
* *
70632733 CGTGAAAATATCAGG
63 CGTGACAACATCAGG
70632748 AGAAACATTG
Statistics
Matches: 233, Mismatches: 43, Indels: 22
0.78 0.14 0.07
Matches are distributed among these distances:
208 3 0.01
209 5 0.02
210 211 0.91
211 10 0.04
212 4 0.02
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (210 bp):
ACAATATCTTCAGCTTCAGAAACCCTCCCCTCCTTGCAATGTGCATCAATCAATATGTTATACGT
GACAACATCAGGCTCAACACCTTGCTTTCTCATTGTGGCAATAGCATCCAAAGATTCAGAAATAC
GCCTCTCCTTGCAACACGCATCAACCAATATATTATACGTCACAACATCAGGCTCAATGCCTTCC
TTTCTCATCGCATCA
Found at i:70633618 original size:342 final size:342
Alignment explanation
Indices: 70632993--70633677 Score: 1147
Period size: 342 Copynumber: 2.0 Consensus size: 342
70632983 CTTAGAAACT
* * * *
70632993 TAACAGCTCGACCAGTGTTCCCAGTCTTACACAACCCATTAAGTACTGTATTGTAAGCAACTGAA
1 TAACAGCTCGACCAGTGTTACCAGACTTACACAACCCATTAAGTACTGTATTGCAAGCAAATGAA
* * * * *
70633058 TCAGGTCGACACCCTTTTTTGATCATTTCATCAAACAAACTTGCAGCCTGAGAAACCTTGTTTTG
66 TCAGGTCGACACCCTTTTTCGATCATTTCATAAAACAAACTTACAGCCTGAGAAACCCTGCTTTG
70633123 ATTACAAAGTCCATTAATCAAAGTGGACAAAGTTACAACATCAGGTTCAAAACCTAACTTGAGCA
131 ATTACAAAGTCCATTAATCAAAGTGGACAAAGTTACAACATCAGGTTCAAAACCTAACTTGAGCA
*
70633188 TTTTCCCCAAAACAGAAAACCCAAAATCAACTTTACCTAACTGACAAAAGCAATTAATCAAAATG
196 TTTTCCCCAAAACAGAAAACCCAAAATCAACTTTACCTAAATGACAAAAGCAATTAATCAAAATG
* * * * * *
70633253 TTGAAAGAATGAGCATCATGTGAAACTCCCCATAGTTCCATCTGGCTGCCCAGAGAAACAGCAAG
261 GTGAAAGAATAAGCATCATGTGAAACTCCCCATAATTCCATCTGGCTACCCAGAAAAACAACAAG
70633318 CGCATAATGTTTCATTC
326 CGCATAATGTTTCATTC
*
70633335 TAACAGCTCGACCAGTGTTACCAGACTTGCACAACCCATTAAGTACTGTATTGCAAGCAAATGAA
1 TAACAGCTCGACCAGTGTTACCAGACTTACACAACCCATTAAGTACTGTATTGCAAGCAAATGAA
*
70633400 TCAGGTCGATACCCTTTTTCGATCATTTCATAAAACAAA-TTCACAGCCTGAGAAACCCTGCTTT
66 TCAGGTCGACACCCTTTTTCGATCATTTCATAAAACAAACTT-ACAGCCTGAGAAACCCTGCTTT
* *
70633464 GATTACAAAGTCCATTAATCAAGGTGGACAAAGTTACAACATTAGGTTCAAAACCTAACTTGAGC
130 GATTACAAAGTCCATTAATCAAAGTGGACAAAGTTACAACATCAGGTTCAAAACCTAACTTGAGC
*
70633529 ATTTTCCCCAAAACAGAAAACCCAAAATCAACTTTACCTAAATGACAAAAGCAATTAATCAAGAT
195 ATTTTCCCCAAAACAGAAAACCCAAAATCAACTTTACCTAAATGACAAAAGCAATTAATCAAAAT
* *
70633594 GGTGAAAGAATAAGCATTATGTGAAACTCCCCGTAATTCCATCTGGCTACCCAGAAAAACAACAA
260 GGTGAAAGAATAAGCATCATGTGAAACTCCCCATAATTCCATCTGGCTACCCAGAAAAACAACAA
70633659 GCGCATAATGTTTCATTC
325 GCGCATAATGTTTCATTC
70633677 T
1 T
70633678 GACAATGGCC
Statistics
Matches: 319, Mismatches: 23, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
341 2 0.01
342 317 0.99
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (342 bp):
TAACAGCTCGACCAGTGTTACCAGACTTACACAACCCATTAAGTACTGTATTGCAAGCAAATGAA
TCAGGTCGACACCCTTTTTCGATCATTTCATAAAACAAACTTACAGCCTGAGAAACCCTGCTTTG
ATTACAAAGTCCATTAATCAAAGTGGACAAAGTTACAACATCAGGTTCAAAACCTAACTTGAGCA
TTTTCCCCAAAACAGAAAACCCAAAATCAACTTTACCTAAATGACAAAAGCAATTAATCAAAATG
GTGAAAGAATAAGCATCATGTGAAACTCCCCATAATTCCATCTGGCTACCCAGAAAAACAACAAG
CGCATAATGTTTCATTC
Found at i:70636653 original size:12 final size:13
Alignment explanation
Indices: 70636638--70636666 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
70636628 TAAGTAATAA
70636638 AATATTATTTTT-
1 AATATTATTTTTG
70636650 AATATTATTTTTG
1 AATATTATTTTTG
70636663 AATA
1 AATA
70636667 ATGAAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (13 bp):
AATATTATTTTTG
Found at i:70638332 original size:42 final size:41
Alignment explanation
Indices: 70638178--70638333 Score: 158
Period size: 42 Copynumber: 3.7 Consensus size: 41
70638168 TATGTTATCG
*
70638178 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGAGATTTA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT--GATTCA
* * * *
70638220 TGTATAAGACCATGTCTGGGACATCGGCATC-ATATTTGATTTCG
1 TG--TAAGACCACGTCTGGGACGTTGGCATCGATA-TTGA-TTCA
70638264 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTGATT-CA
70638306 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
70638334 TGTACGATTT
Statistics
Matches: 94, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
41 3 0.03
42 53 0.56
43 8 0.09
44 28 0.30
45 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTCA
Found at i:70645653 original size:42 final size:41
Alignment explanation
Indices: 70645499--70645654 Score: 158
Period size: 42 Copynumber: 3.7 Consensus size: 41
70645489 TATGTTATCG
*
70645499 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGAGATTTA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT--GATTCA
* * * *
70645541 TGTATAAGACCATGTCTGGGACATCGGCATC-ATATTTGATTTCG
1 TG--TAAGACCACGTCTGGGACGTTGGCATCGATA-TTGA-TTCA
70645585 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTGATT-CA
70645627 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
70645655 TGTCGATTTT
Statistics
Matches: 94, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
41 3 0.03
42 53 0.56
43 8 0.09
44 28 0.30
45 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTCA
Found at i:70655802 original size:11 final size:11
Alignment explanation
Indices: 70655786--70655813 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
70655776 AAATTTTGGG
70655786 TTAACCATAGT
1 TTAACCATAGT
70655797 TTAACCATAGT
1 TTAACCATAGT
70655808 TTAACC
1 TTAACC
70655814 GATGACAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (11 bp):
TTAACCATAGT
Found at i:70662591 original size:28 final size:28
Alignment explanation
Indices: 70662551--70662606 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
70662541 ATAAAGGGGC
*
70662551 GCTCTTGTGAGCTATGGTGTGTTCGCAA
1 GCTCTTATGAGCTATGGTGTGTTCGCAA
70662579 GCTCTTATGAGCTATGGTGTGTTCGCAA
1 GCTCTTATGAGCTATGGTGTGTTCGCAA
70662607 CATATGCAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.16, C:0.18, G:0.30, T:0.36
Consensus pattern (28 bp):
GCTCTTATGAGCTATGGTGTGTTCGCAA
Found at i:70664373 original size:45 final size:45
Alignment explanation
Indices: 70664309--70664399 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
70664299 GAACTATGAA
*
70664309 ATCTGGACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
* * *
70664354 ATCTGAACTCATTGAGTTGTGTTCTGAGTTCATGATGTATGTGAC
1 ATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
70664399 A
1 A
70664400 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
Found at i:70671411 original size:33 final size:33
Alignment explanation
Indices: 70671372--70671708 Score: 454
Period size: 33 Copynumber: 10.4 Consensus size: 33
70671362 CCCATTCCCA
*
70671372 TGTTCATCCCCATGCCTGCG-CTCATGCCCATAT
1 TGTTCATCCCCATGCCTG-GATTCATGCCCATAT
* *
70671405 TGTTCATCTCCATGCCTGGATTCATGCCCATGT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
70671438 TGTTCATCCCCATGCCTGGATTCATGCCC--A-
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
**
70671468 TGTTCATCCCCATGCCTTTATTCATGCCCATAT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
** * **
70671501 TACTCATCACCATGCCTTTATTCATGCCCATAT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
**
70671534 TACTCATCCCCATGCCTGGATTCATGCCCATAT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
*
70671567 TGCTCATCCCCATGCCTGGATTCATGCCCATAT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
* *
70671600 TGCTCATCCCCATGCCTGGATTTATGCCCATAT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
* *
70671633 TGCTCATCCCCATGCCTGGATTCATGCCCATGT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
*
70671666 TGTTCATCCCCATGCCTGGGTTCATGCCC--A-
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
70671696 TGTTCATCCCCAT
1 TGTTCATCCCCAT
70671709 TCCCATGCCC
Statistics
Matches: 280, Mismatches: 20, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
30 40 0.14
32 2 0.01
33 238 0.85
ACGTcount: A:0.18, C:0.35, G:0.14, T:0.33
Consensus pattern (33 bp):
TGTTCATCCCCATGCCTGGATTCATGCCCATAT
Found at i:70672544 original size:33 final size:33
Alignment explanation
Indices: 70672500--70673123 Score: 321
Period size: 33 Copynumber: 19.2 Consensus size: 33
70672490 AGACTGTGTG
* **
70672500 GGTTGGGCATATGGATTAGCACTTGGCTGAACA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* *
70672533 GGTTGGCCATATGGATTAGCA-TTAGGCTGTGTA
1 GGTTGGCCATATGGATTAGCACTT-GGCTGCGCA
* ** *
70672566 GGCTGGCTGTATGGATTAGCA-TTCGGCTGAGCA
1 GGTTGGCCATATGGATTAGCACTT-GGCTGCGCA
*** *
70672599 GGTTGGTTGTATGGATTAGCACTTGGCTGAGCA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
** **
70672632 GGTTGGCCATATGGATTAGCA-TGTACCTGTACA
1 GGTTGGCCATATGGATTAGCACT-TGGCTGCGCA
** * * *
70672665 GGTTGGCTGTATGGATTAGCA-TTTGCTTGTGCT
1 GGTTGGCCATATGGATTAGCACTTGGC-TGCGCA
* * * * * *
70672698 GGTTGACTATACGGATTAGCATTTGGTTGTGCA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* * * * * * * **
70672731 GATTGACCATAAGGATCAGCATTTGGTTGTGTT
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* *
70672764 GGCTGGCCATAGGGATTAGCAC-T---T--G-A
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* * * *
70672790 --CTGGCCATATGGGTTTGCAC-TGGGTGGCGCA
1 GGTTGGCCATATGGATTAGCACTTGGCT-GCGCA
** *
70672821 GGCAGGCCATA-GAGATTAGCACTTGGCTGC-CC
1 GGTTGGCCATATG-GATTAGCACTTGGCTGCGCA
* ** * * *
70672853 GTTTTGGCTGTATGGGTTAGCACTGGGCTGCACA
1 G-GTTGGCCATATGGATTAGCACTTGGCTGCGCA
* * *
70672887 GGCTGGCCATAGGGATTAGCACTTGAG-TGCCCA
1 GGTTGGCCATATGGATTAGCACTTG-GCTGCGCA
** * * * *
70672920 TTTTGGCCATATGGGTTAGTACTGGGCTGCACA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* * * *
70672953 GGCTGGCCATAGGGATTAGCACTTGGTTGCCCA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
** *
70672986 TTTTGGCCATATGGATTAGCA-TTGGGCTGCTCA
1 GGTTGGCCATATGGATTAGCACTT-GGCTGCGCA
* * * *
70673019 GGCTGGCCATAGGGATTAGCACTTGGTTGCCCA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
** * *
70673052 TTTTGGCCATATGGATTAGCACTGGGCTGAGCA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* * * *
70673085 AGCTGGCCATATGGATTCGCACTTGGCTGCGCG
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
70673118 GGTTGG
1 GGTTGG
70673124 TACATATTAG
Statistics
Matches: 454, Mismatches: 114, Indels: 46
0.74 0.19 0.07
Matches are distributed among these distances:
24 18 0.04
27 2 0.00
29 1 0.00
30 1 0.00
31 1 0.00
32 12 0.03
33 404 0.89
34 15 0.03
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.30
Consensus pattern (33 bp):
GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
Found at i:70672904 original size:66 final size:66
Alignment explanation
Indices: 70672791--70673114 Score: 447
Period size: 66 Copynumber: 4.9 Consensus size: 66
70672781 AGCACTTGAC
* * * * *
70672791 TGGCCATATGGGTTTGCACTGGG-TGGCGCAGGCAGGCCATAGAGATTAGCACTTGGCTGCCCGT
1 TGGCCATATGGGTTAGCACTGGGCT-GCACAGGCTGGCCATAGGGATTAGCACTTGGCTGCCCAT
70672855 TT
65 TT
**
70672857 TGGCTGTATGGGTTAGCACTGGGCTGCACAGGCTGGCCATAGGGATTAGCACTTGAG-TGCCCAT
1 TGGCCATATGGGTTAGCACTGGGCTGCACAGGCTGGCCATAGGGATTAGCACTTG-GCTGCCCAT
70672921 TT
65 TT
* *
70672923 TGGCCATATGGGTTAGTACTGGGCTGCACAGGCTGGCCATAGGGATTAGCACTTGGTTGCCCATT
1 TGGCCATATGGGTTAGCACTGGGCTGCACAGGCTGGCCATAGGGATTAGCACTTGGCTGCCCATT
70672988 T
66 T
* * * *
70672989 TGGCCATATGGATTAGCATTGGGCTGCTCAGGCTGGCCATAGGGATTAGCACTTGGTTGCCCATT
1 TGGCCATATGGGTTAGCACTGGGCTGCACAGGCTGGCCATAGGGATTAGCACTTGGCTGCCCATT
70673054 T
66 T
* * * *
70673055 TGGCCATATGGATTAGCACTGGGCTG-AGCAAGCTGGCCATATGGATTCGCACTTGGCTGC
1 TGGCCATATGGGTTAGCACTGGGCTGCA-CAGGCTGGCCATAGGGATTAGCACTTGGCTGC
70673115 GCGGGTTGGT
Statistics
Matches: 234, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
65 1 0.00
66 231 0.99
67 2 0.01
ACGTcount: A:0.18, C:0.22, G:0.32, T:0.27
Consensus pattern (66 bp):
TGGCCATATGGGTTAGCACTGGGCTGCACAGGCTGGCCATAGGGATTAGCACTTGGCTGCCCATT
T
Found at i:70679292 original size:2 final size:2
Alignment explanation
Indices: 70679285--70679318 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
70679275 GAAAAATGAA
* *
70679285 AG AG AG AG AG AG AG AG AC AG AG AG AT AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
70679319 GAGGAGTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.44, T:0.03
Consensus pattern (2 bp):
AG
Found at i:70679504 original size:18 final size:17
Alignment explanation
Indices: 70679483--70679516 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
70679473 CGGTTTTGTT
70679483 TCTTTTTATTATTTTTAC
1 TCTTTTT-TTATTTTTAC
*
70679501 TCTTTTTTTTTTTTTA
1 TCTTTTTTTATTTTTA
70679517 GATTTAGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (17 bp):
TCTTTTTTTATTTTTAC
Found at i:70687316 original size:59 final size:59
Alignment explanation
Indices: 70687243--70687361 Score: 229
Period size: 59 Copynumber: 2.0 Consensus size: 59
70687233 GCCTAAAAAG
*
70687243 AAAATGTAAAGTTTAACTATTTTACACTCACCCATTGCAACATTCACTCTTCCCTGAAT
1 AAAATATAAAGTTTAACTATTTTACACTCACCCATTGCAACATTCACTCTTCCCTGAAT
70687302 AAAATATAAAGTTTAACTATTTTACACTCACCCATTGCAACATTCACTCTTCCCTGAAT
1 AAAATATAAAGTTTAACTATTTTACACTCACCCATTGCAACATTCACTCTTCCCTGAAT
70687361 A
1 A
70687362 GTTTTATCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (59 bp):
AAAATATAAAGTTTAACTATTTTACACTCACCCATTGCAACATTCACTCTTCCCTGAAT
Found at i:70692499 original size:26 final size:26
Alignment explanation
Indices: 70692460--70692515 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
70692450 AAAAGATTGG
70692460 TTAA-TAAAATAATTCATGGATTACA
1 TTAATTAAAATAATTCATGGATTACA
70692485 TTAATTAAAATAATTCATGGATTACA
1 TTAATTAAAATAATTCATGGATTACA
70692511 TTAAT
1 TTAAT
70692516 ATACTTTGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 4 0.13
26 26 0.87
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39
Consensus pattern (26 bp):
TTAATTAAAATAATTCATGGATTACA
Found at i:70692847 original size:31 final size:31
Alignment explanation
Indices: 70692809--70692872 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
70692799 TAACTAATTG
70692809 AACTGATAGTACATCGGGTTGGACCCAAGAA
1 AACTGATAGTACATCGGGTTGGACCCAAGAA
70692840 AACTGATAGTACATCGGGTTGGACCCAAGAA
1 AACTGATAGTACATCGGGTTGGACCCAAGAA
70692871 AA
1 AA
70692873 ATAGATCCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.19
Consensus pattern (31 bp):
AACTGATAGTACATCGGGTTGGACCCAAGAA
Found at i:70700746 original size:31 final size:30
Alignment explanation
Indices: 70700710--70700771 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 30
70700700 AAAGATTAAA
70700710 ATTATTAGTAATTATCGTCTTTCTATTATTT
1 ATTATTAGTAATTATCGT-TTTCTATTATTT
* *
70700741 ATTATTAGTAATTATTGTTTTTTATTATTT
1 ATTATTAGTAATTATCGTTTTCTATTATTT
70700771 A
1 A
70700772 ACTGATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 12 0.41
31 17 0.59
ACGTcount: A:0.27, C:0.05, G:0.06, T:0.61
Consensus pattern (30 bp):
ATTATTAGTAATTATCGTTTTCTATTATTT
Found at i:70701458 original size:15 final size:17
Alignment explanation
Indices: 70701427--70701458 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
70701417 ATAATTATAT
70701427 AAATTATAATCATTTTA
1 AAATTATAATCATTTTA
70701444 AAATT-TAAT-ATTTTA
1 AAATTATAATCATTTTA
70701459 TTCATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 4 0.27
17 5 0.33
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
AAATTATAATCATTTTA
Found at i:70705214 original size:11 final size:11
Alignment explanation
Indices: 70705200--70705239 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
70705190 TATTTTCTCC
70705200 CTATTTTGCTA
1 CTATTTTGCTA
*
70705211 CTATTTTACTA
1 CTATTTTGCTA
* *
70705222 TTATGTTGCTA
1 CTATTTTGCTA
70705233 CTATTTT
1 CTATTTT
70705240 ATTGTTATTG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.15, G:0.07, T:0.57
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:70705497 original size:12 final size:12
Alignment explanation
Indices: 70705467--70705499 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
70705457 TATATATTTT
70705467 AAAATT-ATATA
1 AAAATTAATATA
70705478 AAAA-TAATATA
1 AAAATTAATATA
70705489 AAAATTAATAT
1 AAAATTAATAT
70705500 GGGCAGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:70711689 original size:18 final size:18
Alignment explanation
Indices: 70711670--70711744 Score: 80
Period size: 18 Copynumber: 4.2 Consensus size: 18
70711660 CCCAACTACT
*
70711670 GTATACATGAATAGTACT
1 GTATACATGAATAGTACC
* *
70711688 GTATACGTAAATAGTACC
1 GTATACATGAATAGTACC
* *
70711706 ATATA-AGTGAATAGTGCC
1 GTATACA-TGAATAGTACC
*
70711724 GTATACATGAATAGTGCC
1 GTATACATGAATAGTACC
70711742 GTA
1 GTA
70711745 AATGGTCGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
18 46 0.98
19 1 0.02
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.29
Consensus pattern (18 bp):
GTATACATGAATAGTACC
Found at i:70713027 original size:24 final size:24
Alignment explanation
Indices: 70712999--70713045 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
70712989 ATCGTAGGTC
*
70712999 AAATAAATTATGCTAATAAATACT
1 AAATAAATTATACTAATAAATACT
*
70713023 AAATATATTATACTAATAAATAC
1 AAATAAATTATACTAATAAATAC
70713046 AAACTCTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.55, C:0.09, G:0.02, T:0.34
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:70719908 original size:15 final size:15
Alignment explanation
Indices: 70719881--70719923 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
70719871 TTCATTATGA
*
70719881 TATTGTATCTTGGATT
1 TATT-TATCTTGGACT
*
70719897 TATTTGTCTTGGACT
1 TATTTATCTTGGACT
*
70719912 TCTTTATCTTGG
1 TATTTATCTTGG
70719924 TTTTCATGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 19 0.83
16 4 0.17
ACGTcount: A:0.14, C:0.12, G:0.19, T:0.56
Consensus pattern (15 bp):
TATTTATCTTGGACT
Found at i:70722774 original size:54 final size:50
Alignment explanation
Indices: 70722683--70722833 Score: 166
Period size: 54 Copynumber: 3.0 Consensus size: 50
70722673 GCAACATGTT
*
70722683 ATATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGTGATGTG
1 ATATGTGATTTCCGTATAAGACCATA-TTGGGATATGGCATC-GTGTGAT-TG
* *
70722736 ATCATGTGATTTCCATATAAGGCCATATCTGGGATATGGCATCG-GT-A-TG
1 AT-ATGTGATTTCCGTATAAGACCATAT-TGGGATATGGCATCGTGTGATTG
* *
70722785 ATATGTG-CTTCTGTATAAGACCATATTTGGGATATGGCATCAGTGTGAT
1 ATATGTGATTTCCGTATAAGACCATA-TTGGGATATGGCATC-GTGTGAT
70722834 ATGTGATCTG
Statistics
Matches: 84, Mismatches: 7, Indels: 16
0.79 0.07 0.15
Matches are distributed among these distances:
47 28 0.33
48 7 0.08
49 6 0.07
50 1 0.01
51 1 0.01
52 2 0.02
53 4 0.05
54 35 0.42
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.34
Consensus pattern (50 bp):
ATATGTGATTTCCGTATAAGACCATATTGGGATATGGCATCGTGTGATTG
Found at i:70722809 original size:47 final size:46
Alignment explanation
Indices: 70722751--70722868 Score: 146
Period size: 47 Copynumber: 2.5 Consensus size: 46
70722741 GTGATTTCCA
* * *
70722751 TATAAGGCCATATCTGGGATATGGCATCGGTATGATATGTGCTTCTG
1 TATAAGACCATATCTGGGATATGGCATCAGTATGATATGTG-ATCTG
* *
70722798 TATAAGACCATATTTGGGATATGGCATCAGTGTGATATGTGATCTG
1 TATAAGACCATATCTGGGATATGGCATCAGTATGATATGTGATCTG
* ** *
70722844 TGTAAGACCATGGCTGGGTTATGGC
1 TATAAGACCATATCTGGGATATGGC
70722869 TTTGGTGTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
46 24 0.39
47 37 0.61
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.33
Consensus pattern (46 bp):
TATAAGACCATATCTGGGATATGGCATCAGTATGATATGTGATCTG
Found at i:70725749 original size:42 final size:42
Alignment explanation
Indices: 70725651--70725802 Score: 169
Period size: 43 Copynumber: 3.6 Consensus size: 42
70725641 TAAGAAATTC
* * *
70725651 GAGCTCGTTGAGCGGTCCGAGTTGGTGATATATGTGAGAATCT
1 GAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTG-GCATCT
* * *
70725694 GAACTTGTTGAGTGGTCCAAGTTCGTGATATATGTGGCATCT
1 GAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTGGCATCT
* * ** **
70725736 GAGCTCGTTGAGTGGTCCGAGTTCATTATGCATGCAAGCATCT
1 GAGCTCGTTGAGTGGTCCGAGTTCGTGATATATG-TGGCATCT
*
70725779 GAGCTCGTTGAGTGGTCTGAGTTC
1 GAGCTCGTTGAGTGGTCCGAGTTC
70725803 ATAATGGATG
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
42 32 0.35
43 60 0.65
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.32
Consensus pattern (42 bp):
GAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTGGCATCT
Found at i:70725789 original size:43 final size:43
Alignment explanation
Indices: 70725730--70725813 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
70725720 GATATATGTG
*
70725730 GCATCTGAGCTCGTTGAGTGGTCCGAGTTCATTATGCATGCAA
1 GCATCTGAGCTCGTTGAGTGGTCCGAGTTCATAATGCATGCAA
* *
70725773 GCATCTGAGCTCGTTGAGTGGTCTGAGTTCATAATGGATGC
1 GCATCTGAGCTCGTTGAGTGGTCCGAGTTCATAATGCATGC
70725814 GATACATGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (43 bp):
GCATCTGAGCTCGTTGAGTGGTCCGAGTTCATAATGCATGCAA
Found at i:70725839 original size:51 final size:51
Alignment explanation
Indices: 70725774--70725873 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
70725764 TGCATGCAAG
* *
70725774 CATCTGAGCTCGTTGAGTGG-TCTGAGTTCATAATGGATGCGATACATGTAA
1 CATCCGAGCTCGTTGAGAGGTTC-GAGTTCATAATGGATGCGATACATGTAA
* * * *
70725825 CATCCGAGCTCGTTGAGAGGTTCGAGTTTATTATGGATGTGTTACATGT
1 CATCCGAGCTCGTTGAGAGGTTCGAGTTCATAATGGATGCGATACATGT
70725874 TATAAGGTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 40 0.95
52 2 0.05
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (51 bp):
CATCCGAGCTCGTTGAGAGGTTCGAGTTCATAATGGATGCGATACATGTAA
Found at i:70728292 original size:15 final size:16
Alignment explanation
Indices: 70728261--70728293 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
70728251 GTATGTATAC
70728261 ATGTATATAAAAATAA
1 ATGTATATAAAAATAA
*
70728277 ATGTAT-TAACAATAA
1 ATGTATATAAAAATAA
70728292 AT
1 AT
70728294 ATAATAGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (16 bp):
ATGTATATAAAAATAA
Found at i:70728653 original size:27 final size:28
Alignment explanation
Indices: 70728597--70728670 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 28
70728587 AATAATAAGG
70728597 ATAACATATAAAAAATACATACATGAAATA
1 ATAA-ATATAAAAAATACATACAT-AAATA
* *
70728627 GTATATATAAAAAATACATA-ACT-AATA
1 ATAAATATAAAAAATACATACA-TAAATA
*
70728654 ATAAAAAT-AAAAATACA
1 ATAAATATAAAAAATACA
70728671 ACGACATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 9 0.24
27 9 0.24
28 1 0.03
29 17 0.45
30 2 0.05
ACGTcount: A:0.65, C:0.08, G:0.03, T:0.24
Consensus pattern (28 bp):
ATAAATATAAAAAATACATACATAAATA
Found at i:70730600 original size:20 final size:20
Alignment explanation
Indices: 70730575--70730622 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
70730565 TTGAGGACAC
*
70730575 GGGCGTGTCCCAAGCTACAT
1 GGGCGTGTCCCAAGCCACAT
70730595 GGGCGTGTCCCAAGCCACAT
1 GGGCGTGTCCCAAGCCACAT
70730615 GGGCGTGT
1 GGGCGTGT
70730623 GTGACCACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.17, C:0.29, G:0.35, T:0.19
Consensus pattern (20 bp):
GGGCGTGTCCCAAGCCACAT
Found at i:70737331 original size:14 final size:14
Alignment explanation
Indices: 70737312--70737341 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
70737302 TTTTTTTATT
70737312 TATAAAAATATACC
1 TATAAAAATATACC
70737326 TATAAAAATATACC
1 TATAAAAATATACC
70737340 TA
1 TA
70737342 AACTATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (14 bp):
TATAAAAATATACC
Found at i:70741198 original size:42 final size:42
Alignment explanation
Indices: 70741129--70741212 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
70741119 AATGAAGGAA
*
70741129 GAAAACTATCATCTTCGTTTCTTCTTCATCTAATAGTCGATT
1 GAAAACTATCATCTTCGTTTCTTCTTCATCTAATAATCGATT
* * * *
70741171 GAAAGCTATTATCTTTGTTTTTTCTTCATCTAATAATCGATT
1 GAAAACTATCATCTTCGTTTCTTCTTCATCTAATAATCGATT
70741213 AGCCATTGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (42 bp):
GAAAACTATCATCTTCGTTTCTTCTTCATCTAATAATCGATT
Found at i:70748544 original size:18 final size:20
Alignment explanation
Indices: 70748506--70748545 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
70748496 CAAAAAGAGG
70748506 AATTGAAGTGGATCGAGAAAA
1 AATTGAAGTGGATC-AGAAAA
70748527 AATTGAAGT-GAT-AGAAAA
1 AATTGAAGTGGATCAGAAAA
70748545 A
1 A
70748546 TTACCACCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
20 3 0.16
21 9 0.47
ACGTcount: A:0.53, C:0.03, G:0.25, T:0.20
Consensus pattern (20 bp):
AATTGAAGTGGATCAGAAAA
Found at i:70750757 original size:24 final size:24
Alignment explanation
Indices: 70750730--70750780 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
70750720 CATGGAAGAG
70750730 AAGTTAAAATTTTATTTAAGGATT
1 AAGTTAAAATTTTATTTAAGGATT
*
70750754 AAGTTAAAATTTTGTTTAAGGATT
1 AAGTTAAAATTTTATTTAAGGATT
70750778 AAG
1 AAG
70750781 ACACTTTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (24 bp):
AAGTTAAAATTTTATTTAAGGATT
Found at i:70752903 original size:31 final size:31
Alignment explanation
Indices: 70752867--70752925 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
70752857 AAATTCACAT
* * *
70752867 TTTTGGTAAAATGGCCATTTTGCCCCTAGAC
1 TTTTGGCAAAATGACCATTTTACCCCTAGAC
70752898 TTTTGGCAAAATGACCATTTTACCCCTA
1 TTTTGGCAAAATGACCATTTTACCCCTA
70752926 TGCTCGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (31 bp):
TTTTGGCAAAATGACCATTTTACCCCTAGAC
Found at i:70766608 original size:13 final size:13
Alignment explanation
Indices: 70766590--70766619 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
70766580 AAACTAGATT
*
70766590 TTAACTAAGGAAA
1 TTAACTAAGAAAA
70766603 TTAACTAAGAAAA
1 TTAACTAAGAAAA
70766616 TTAA
1 TTAA
70766620 AAAGATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.10, T:0.27
Consensus pattern (13 bp):
TTAACTAAGAAAA
Found at i:70772715 original size:25 final size:25
Alignment explanation
Indices: 70772683--70772730 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
70772673 TTATAATATG
*
70772683 AAAATGACCATTTTACCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
70772708 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
70772731 GTTTATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:70772792 original size:20 final size:20
Alignment explanation
Indices: 70772767--70772837 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
70772757 ATTTTGATAA
70772767 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70772787 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70772807 ACATGATATGTATGAAATGC
1 ACATGATATGTATGATATGC
* *
70772827 GCATGAGATGT
1 ACATGATATGT
70772838 TCATAAATGC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70772914 original size:23 final size:23
Alignment explanation
Indices: 70772884--70772980 Score: 140
Period size: 23 Copynumber: 4.1 Consensus size: 23
70772874 AGGAAGTGCA
*
70772884 AAAGGGCTTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
70772907 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
70772930 AAAGGGCTTATGCCCCAGTTATAAA
1 AAAGGGCTTATGCCCCAGTTAT--T
* *
70772955 AAAGGGCTTTTGCCCCAGTTACT
1 AAAGGGCTTATGCCCCAGTTATT
70772978 AAA
1 AAA
70772981 AGAGGCTAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
23 47 0.70
25 20 0.30
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:70772972 original size:48 final size:46
Alignment explanation
Indices: 70772884--70772980 Score: 140
Period size: 48 Copynumber: 2.1 Consensus size: 46
70772874 AGGAAGTGCA
* *
70772884 AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAATTATAAAAGGGCTTATGCCCCAGTTACT
* *
70772930 AAAGGGCTTATGCCCCAGTTATAAAAAAGGGCTTTTGCCCCAGTTACT
1 AAAGGGCTTATGCCCCAATTAT--AAAAGGGCTTATGCCCCAGTTACT
70772978 AAA
1 AAA
70772981 AGAGGCTAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
46 21 0.47
48 24 0.53
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAATTATAAAAGGGCTTATGCCCCAGTTACT
Found at i:70780801 original size:8 final size:8
Alignment explanation
Indices: 70780788--70780817 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
70780778 CTAGATCGGC
70780788 AAAAGCCG
1 AAAAGCCG
70780796 AAAAGCCG
1 AAAAGCCG
*
70780804 AAATGCCG
1 AAAAGCCG
70780812 AAAAGC
1 AAAAGC
70780818 TGGTATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:70781265 original size:27 final size:27
Alignment explanation
Indices: 70781207--70781296 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
70781197 AGGAAGCATC
70781207 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
70781235 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
70781262 CTGGTGGCACTGCCACAAAATATCTGGAT
1 CTGGTGGCACTGCCAC-AAATATCT-GTT
70781291 CTGGTG
1 CTGGTG
70781297 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 8 0.15
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:70781307 original size:29 final size:28
Alignment explanation
Indices: 70781217--70781307 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
70781207 CTGGTGGCTA
* * * *
70781217 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGATCTGGTGACAC
* * *
70781245 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGATCTGGTGACAC
*
70781272 TGCCACAAAATATCTGGATCTGGTGACTC
1 TGCCACAAAATATCT-GATCTGGTGACAC
*
70781301 TGTCACA
1 TGCCACA
70781308 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 24 0.45
28 13 0.25
29 16 0.30
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGATCTGGTGACAC
Found at i:70781315 original size:55 final size:56
Alignment explanation
Indices: 70781207--70781321 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
70781197 AGGAAGCATC
* * *
70781207 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGATCTGGTGACCCTGCCACATATATCTGTAT
* * *
70781262 CTGGTGGC-ACTGCCACAAAATATCTGGATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCT-GATCTGGTGACCCTGCCACATATATCTGTAT
70781318 CTGG
1 CTGG
70781322 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 28 0.55
56 22 0.43
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGATCTGGTGACCCTGCCACATATATCTGTAT
Found at i:70784153 original size:125 final size:124
Alignment explanation
Indices: 70783992--70784219 Score: 329
Period size: 127 Copynumber: 1.8 Consensus size: 124
70783982 TAGAATAAAT
70783992 GTTTTTAATTAAAAAAATGATAATTATTAATATATAATTATATCCATTATAA-TATATATTAATT
1 GTTTTTAATTAAAAAAATGATAATTATTAATATATAATTATATCCATTATAATTATATATTAATT
* *
70784056 ATTATCAACTTTA-TATAGAGTTAGGATTAGTGTTAATTTCATCATATTTTATTTGATAA
66 ATTATCAA-TTTAGCATAGAATTAGGATTAGTGTTAATTTCATCATATTTTATTTGATAA
*
70784115 GTTTTTAA-TAATAATAAGATGATAATCT-TTAATATATAATTATATCTATTATAATTTATATAT
1 GTTTTTAATTAA-AA-AA-ATGATAAT-TATTAATATATAATTATATCCATTATAA-TTATATAT
* *
70784178 TAATTTTTATCAATTTAGCATAGAATTAGGATTAGTTTTAAT
61 TAATTATTATCAATTTAGCATAGAATTAGGATTAGTGTTAAT
70784220 CATAACTCAT
Statistics
Matches: 93, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
122 3 0.03
123 10 0.11
124 2 0.02
125 33 0.35
126 5 0.05
127 40 0.43
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.48
Consensus pattern (124 bp):
GTTTTTAATTAAAAAAATGATAATTATTAATATATAATTATATCCATTATAATTATATATTAATT
ATTATCAATTTAGCATAGAATTAGGATTAGTGTTAATTTCATCATATTTTATTTGATAA
Found at i:70785960 original size:40 final size:40
Alignment explanation
Indices: 70785896--70785972 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
70785886 ATACAGTACC
* *
70785896 ACTTGGTGTATAGGGTTGGATGGGTTGATTCTATCCCCAT
1 ACTTGGTGTATAGGGCTGGATGGGTCGATTCTATCCCCAT
* * *
70785936 ACTTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCCC
1 ACTTGGTGTATAGGGCTGGATGGGTCGATTCTATCCC
70785973 TACATAGTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.14, C:0.16, G:0.34, T:0.36
Consensus pattern (40 bp):
ACTTGGTGTATAGGGCTGGATGGGTCGATTCTATCCCCAT
Found at i:70805406 original size:93 final size:92
Alignment explanation
Indices: 70805247--70805426 Score: 333
Period size: 93 Copynumber: 1.9 Consensus size: 92
70805237 CCTTTTAAGA
70805247 TATGTGGCATGTAATAGGGGTATCTTGTATATATTATAATTATTTACTCCAAATGGTATGCTTAT
1 TATGTGGCATGTAATAGGGGTATCTTGTATATATTATAATTATTTACTCCAAATGGTATGCTTAT
*
70805312 GCTAGTGTGATGGTTATACGTTTAAGGT
66 GCTAGTGCGATGGTTATA-GTTTAAGGT
70805340 TATGTGGCATGTAATAGGGGTATCTTGTATATATTATAATTATTTACTCCAAATGGTATGCTTAT
1 TATGTGGCATGTAATAGGGGTATCTTGTATATATTATAATTATTTACTCCAAATGGTATGCTTAT
*
70805405 GCTAGTGCGATGTTTATAGTTT
66 GCTAGTGCGATGGTTATAGTTT
70805427 GTTGTGAAAA
Statistics
Matches: 85, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
92 4 0.05
93 81 0.95
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.43
Consensus pattern (92 bp):
TATGTGGCATGTAATAGGGGTATCTTGTATATATTATAATTATTTACTCCAAATGGTATGCTTAT
GCTAGTGCGATGGTTATAGTTTAAGGT
Found at i:70805854 original size:24 final size:24
Alignment explanation
Indices: 70805827--70805878 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
70805817 ATTTTAGGTG
*
70805827 CACACAACTTGAGACACGGGCTT-T
1 CACACAACCTGAGACACGGG-TTGT
* *
70805851 CACATAGCCTGAGACACGGGTTGT
1 CACACAACCTGAGACACGGGTTGT
70805875 CACA
1 CACA
70805879 TGGCGTGTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (24 bp):
CACACAACCTGAGACACGGGTTGT
Found at i:70809317 original size:43 final size:43
Alignment explanation
Indices: 70809255--70809369 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
70809245 ATATAAGTTT
* *
70809255 CAGTTTAACCC-TATTGGGTTTTCGTTTAGCTCTTTTGTAGCTT-
1 CAGTTTAACCCTTA-TGGGTTTCCGTTTAGCTCTTATG-AGCTTC
* *
70809298 TAGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTATGAGCTTC
1 CAGTTTAACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCTTC
*
70809341 CA-TTCAACCCTTATGGGTTTCCGTTTAGC
1 CAGTTTAACCCTTATGGGTTTCCGTTTAGC
70809370 ACTTGTGTGC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 30 0.48
43 31 0.49
44 2 0.03
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (43 bp):
CAGTTTAACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCTTC
Found at i:70809334 original size:21 final size:21
Alignment explanation
Indices: 70809304--70809365 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
70809294 GCTTTAGTTT
70809304 AACCCTTATGGGTTTCCGTTC
1 AACCCTTATGGGTTTCCGTTC
* * * * *
70809325 AGCTCTTATGAGCTTCCATTC
1 AACCCTTATGGGTTTCCGTTC
70809346 AACCCTTATGGGTTTCCGTT
1 AACCCTTATGGGTTTCCGTT
70809366 TAGCACTTGT
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.16, C:0.27, G:0.18, T:0.39
Consensus pattern (21 bp):
AACCCTTATGGGTTTCCGTTC
Found at i:70809352 original size:42 final size:43
Alignment explanation
Indices: 70809253--70809382 Score: 133
Period size: 42 Copynumber: 3.1 Consensus size: 43
70809243 TCATATAAGT
* * * *
70809253 TTCAGTTTAACCC-TATTGGGTTTTCGTTTAGCTCTTTTGTAGC
1 TTCAGTTCAACCCTTA-TGGGTTTCCGTTCAGCTCTTATGTAGC
* *
70809296 TTTAGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTATG-AGC
1 TTCAGTTCAACCCTTATGGGTTTCCGTTCAGCTCTTATGTAGC
* * *
70809338 TTCCA-TTCAACCCTTATGGGTTTCCGTTTAGCACTTGTGT-GC
1 TT-CAGTTCAACCCTTATGGGTTTCCGTTCAGCTCTTATGTAGC
70809380 TTC
1 TTC
70809383 TGTGCAGCCT
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 39 0.52
43 33 0.44
44 2 0.03
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (43 bp):
TTCAGTTCAACCCTTATGGGTTTCCGTTCAGCTCTTATGTAGC
Found at i:70812920 original size:51 final size:51
Alignment explanation
Indices: 70812844--70812945 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
70812834 GTTAATTTGT
*
70812844 ATATTTGTGGTTTCTAGATTGATGGATAGTATATCGATTGTGAAAATGACA
1 ATATTTGTGGTTACTAGATTGATGGATAGTATATCGATTGTGAAAATGACA
*
70812895 ATATTTGTGGTTACTAGATTGATGGATAGTATATTGATTGTGAAAATGACA
1 ATATTTGTGGTTACTAGATTGATGGATAGTATATCGATTGTGAAAATGACA
70812946 CTTAGTGTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (51 bp):
ATATTTGTGGTTACTAGATTGATGGATAGTATATCGATTGTGAAAATGACA
Found at i:70813055 original size:28 final size:28
Alignment explanation
Indices: 70812944--70813107 Score: 141
Period size: 28 Copynumber: 5.8 Consensus size: 28
70812934 GTGAAAATGA
** *
70812944 CACTTAGTGTGCGAATTATTGAGGATGG
1 CACTTAGTGTGCGAAACATCGAGGATGG
* * * *
70812972 CATTTAGTGTGCGAAACATCCAGAAATAG
1 CACTTAGTGTGCGAAACATCGAG-GATGG
* * *
70813001 CACTTAGTGTGC-AAATTATTGAAGATGG
1 CACTTAGTGTGCGAAA-CATCGAGGATGG
* *
70813029 CACTTAGTGTGCGAGACATCGAGGATGA
1 CACTTAGTGTGCGAAACATCGAGGATGG
* * * *
70813057 CACTTAGTGTGCGATACATCCATGAAGG
1 CACTTAGTGTGCGAAACATCGAGGATGG
* *
70813085 CACTGAGTGTGCGAAACTTCGAG
1 CACTTAGTGTGCGAAACATCGAG
70813108 AACAATACTT
Statistics
Matches: 104, Mismatches: 29, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
28 85 0.82
29 19 0.18
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (28 bp):
CACTTAGTGTGCGAAACATCGAGGATGG
Done.