Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 218 of 343
Found at i:71957534 original size:9 final size:9
Alignment explanation
Indices: 71957498--71957527 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
71957488 CTTTAAGACC
71957498 AAAAAAG-A
1 AAAAAAGAA
71957506 AAAAAAGAA
1 AAAAAAGAA
71957515 AAAAAAGAA
1 AAAAAAGAA
71957524 AAAA
1 AAAA
71957528 GAAAAAAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:71957535 original size:7 final size:8
Alignment explanation
Indices: 71957498--71957534 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
71957488 CTTTAAGACC
71957498 AAAAAAGA
1 AAAAAAGA
71957506 AAAAAAGA
1 AAAAAAGA
71957514 AAAAAA-A
1 AAAAAAGA
71957521 GAAAAAAGA
1 -AAAAAAGA
71957530 AAAAA
1 AAAAA
71957535 GGATAGGCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 1 0.04
8 25 0.93
9 1 0.04
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:71958902 original size:44 final size:45
Alignment explanation
Indices: 71958834--71959933 Score: 679
Period size: 44 Copynumber: 25.0 Consensus size: 45
71958824 GATTTCAGCA
* *
71958834 TGGCATCCCTGTGCTTATAGGGAACAAGCT-AAAAATAACAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
* * * *
71958878 TGACATCCCTGTGCTTATAAGGAAC-AGATCGAAGATAACAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
* * * * **
71958922 TGGCATTCCTGTGCTTACAGTGAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGATCGAAAATAACAG-ATT
* *
71958966 TGGCATCCTTGTGCTTATAGGGAACAAG-TTGAAAATAACAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
* * * * *
71959010 TGGCATCCCTGTGTTTATAGGGAAC-AGATCGAAGATAGCAAATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
** * * **
71959054 TAACATTCCC-GTGCTTACAGTGAAGC-AGATC-AAAGATTTCAGCA--
1 TGGCA-TCCCTGTGCTTATAGGGAA-CAAGATCGAAA-ATAACAG-ATT
* *
71959098 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAATAATAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
* *
71959142 TGGCATCCCTGTGCTTATAGGGAAC-AGATCGAAGATAACAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
* * * * * * **
71959186 TGACATTCCTATGCTTACAGTGAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGATCGAAAATAACAG-ATT
* * *
71959230 TGGCATCCCTGTACTTATAGGGAACAAG-TTGAAAATAATAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
* * * * * * *
71959274 TGGCATCCCTGTGTTTGTAGGGAA-TAGATCGAAGATAGCAAATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
** * * * **
71959318 TAACATTCCTGTGCTTACAGTGAAGC-AGATC-AAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGATCGAAA-ATAACAG-ATT
*
71959362 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAATAACAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
* * *
71959406 TGGCATCCCTGTGCTTATAGGGAAC-AGATCGAAGATAACACATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
* * * * * **
71959450 TGACATTCCTGTGCTTACAGTGAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGATCGAAAATAACAG-ATT
* *
71959494 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAATAATAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
* * * * *
71959538 TGGCATCCCTGTGTTTATAGGGAAC-AGATCGAAGATAGCAAATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
*** * * * * **
71959582 TAATATTCCTGTGCTTACAGTGAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGATCGAAAATAACAG-ATT
* *
71959626 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAATAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
* * * *
71959670 TGGCATCCCTGTGCTTATAGGGAAC-ATATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
** * * * * * ** **
71959714 TAACATTCCTGTGCTTACAGTGAAGC-AGATTGAAGATTTCA-ACA
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGATCGAAAATAACAGATT
* * *
71959758 TGGCATCCTTGTGCTTATAGGGAACAAG-TTGAAAATAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
* * *
71959802 TGGAATCCCTGT--TTATAGGGAAC-AGATCGAAGATAACAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
* ** * * **
71959844 TGACATTACTGTGCTTATAGTGAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGATCGAAAATAACAG-ATT
* * * * *
71959888 TGGCATCTCTGTGTTTATAGGGAACAAG-TTGAAGATAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
71959932 TG
1 TG
71959934 ACCCCTTAAG
Statistics
Matches: 811, Mismatches: 190, Indels: 110
0.73 0.17 0.10
Matches are distributed among these distances:
41 2 0.00
42 38 0.05
43 90 0.11
44 566 0.70
45 108 0.13
46 7 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (45 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAAATAACAGATT
Found at i:71959061 original size:132 final size:132
Alignment explanation
Indices: 71958810--71959933 Score: 1820
Period size: 132 Copynumber: 8.5 Consensus size: 132
71958800 GTGTTTTCGC
* * *
71958810 TGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGCTAAAAATAACAG
1 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAACAG
* * **
71958875 ATTTGACATCCCTGTGCTTATAAGGAACAGATCGAAGATAACAGATCTGGCATTCCTGTGCTTAC
66 ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTAACATTCCTGTGCTTAC
71958940 AG
131 AG
*
71958942 TGAAGCAGATCGAAGATTTCAGCATGGCATCCTTGTGCTTATAGGGAACAAGTTGAAAATAACAG
1 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAACAG
* * * *
71959007 ATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAAATCTAACATTCCCGTGCTTAC
66 ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTAACATTCCTGTGCTTAC
71959072 AG
131 AG
* *
71959074 TGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAATAG
1 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAACAG
* *
71959139 ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTATGCTTAC
66 ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTAACATTCCTGTGCTTAC
71959204 AG
131 AG
* *
71959206 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTACTTATAGGGAACAAGTTGAAAATAATAG
1 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAACAG
* * * * *
71959271 ATTTGGCATCCCTGTGTTTGTAGGGAATAGATCGAAGATAGCAAATCTAACATTCCTGTGCTTAC
66 ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTAACATTCCTGTGCTTAC
71959336 AG
131 AG
*
71959338 TGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAACAG
1 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAACAG
* *
71959403 ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACACATCTGACATTCCTGTGCTTAC
66 ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTAACATTCCTGTGCTTAC
71959468 AG
131 AG
*
71959470 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAATAG
1 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAACAG
* * * *
71959535 ATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAAATCTAATATTCCTGTGCTTAC
66 ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTAACATTCCTGTGCTTAC
71959600 AG
131 AG
*
71959602 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAG
1 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAACAG
* *
71959667 ATTTGGCATCCCTGTGCTTATAGGGAACATATCGAAGATAGCAGATCTAACATTCCTGTGCTTAC
66 ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTAACATTCCTGTGCTTAC
71959732 AG
131 AG
* * * *
71959734 TGAAGCAGATTGAAGATTTCAACATGGCATCCTTGTGCTTATAGGGAACAAGTTGAAAATAGCAG
1 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAACAG
* * * *
71959799 ATTTGGAATCCCTGT--TTATAGGGAACAGATCGAAGATAACAGATCTGACATTACTGTGCTTAT
66 ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTAACATTCCTGTGCTTAC
71959862 AG
131 AG
* * * *
71959864 TGAAGCAGATCGAAGATTTCAGCATGGCATCTCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
1 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAACAG
71959929 ATTTG
66 ATTTG
71959934 ACCCCTTAAG
Statistics
Matches: 925, Mismatches: 67, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
130 109 0.12
132 816 0.88
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAACAG
ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAACAGATCTAACATTCCTGTGCTTAC
AG
Found at i:71960035 original size:87 final size:87
Alignment explanation
Indices: 71959934--71960178 Score: 294
Period size: 87 Copynumber: 2.8 Consensus size: 87
71959924 AGCAGATTTG
* * * *
71959934 ACCCCTTAAGCAGTAGAGAAACAGATCGAAAGCGACGAGCCTT-AACTCCCTAAGTAGTAGGGTA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGCGACGAACCTTAAAC-CCCTAAGCAGTAGGGTA
71959998 ACAGGCTAAATTTACAAATCTTA
65 ACAGGCTAAATTTACAAATCTTA
* *
71960021 ACCCCCTAAGCAGTAGGGAAACAGATCGAATGCGATGAACCTTAAACCCCTAAGCAGTAGGGTAA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGCGACGAACCTTAAACCCCTAAGCAGTAGGGTAA
* * * *
71960086 TAGGTTGAATTTACAGATCTTA
66 CAGGCTAAATTTACAAATCTTA
* * * * * ** * * *
71960108 ACTCCCTAAGCAGTAGGGAAATAGATCGAAGGTGATGGGCTTTAAACCCCAAAGCAATAGGGTAA
1 ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGCGACGAACCTTAAACCCCTAAGCAGTAGGGTAA
71960173 CAGGCT
66 CAGGCT
71960179 GAAAATTATA
Statistics
Matches: 136, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
87 133 0.98
88 3 0.02
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.20
Consensus pattern (87 bp):
ACCCCCTAAGCAGTAGGGAAACAGATCGAAAGCGACGAACCTTAAACCCCTAAGCAGTAGGGTAA
CAGGCTAAATTTACAAATCTTA
Found at i:71960073 original size:44 final size:44
Alignment explanation
Indices: 71959934--71960082 Score: 133
Period size: 44 Copynumber: 3.4 Consensus size: 44
71959924 AGCAGATTTG
* * *
71959934 ACCCCTTAAGCAGTAGAGAAACAGATCGAAAGCGACGAGCCTT-A
1 ACCCC-TAAGCAGTAGGGAAACAGATCGAATGCGACGAACCTTAA
* * * * ** * *
71959978 ACTCCCTAAGTAGTAGGGTAACAG-GCTAAAT-TTACAAATCTTAA
1 AC-CCCTAAGCAGTAGGGAAACAGATC-GAATGCGACGAACCTTAA
* *
71960022 CCCCCTAAGCAGTAGGGAAACAGATCGAATGCGATGAACCTTAA
1 ACCCCTAAGCAGTAGGGAAACAGATCGAATGCGACGAACCTTAA
71960066 ACCCCTAAGCAGTAGGG
1 ACCCCTAAGCAGTAGGG
71960083 TAATAGGTTG
Statistics
Matches: 78, Mismatches: 22, Indels: 10
0.71 0.20 0.09
Matches are distributed among these distances:
43 29 0.37
44 46 0.59
45 3 0.04
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.18
Consensus pattern (44 bp):
ACCCCTAAGCAGTAGGGAAACAGATCGAATGCGACGAACCTTAA
Found at i:71960131 original size:43 final size:43
Alignment explanation
Indices: 71959974--71960128 Score: 145
Period size: 43 Copynumber: 3.6 Consensus size: 43
71959964 AGCGACGAGC
* * * * *
71959974 CTTAACTCCCTAAGTAGTAGGGTAACAGGCTAAATTTACAAAT
1 CTTAACTCCCTAAGCAGTAGGGAAACAGGTTGAATTTACAGAT
* * * * *
71960017 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAA--TGCGATGAAC
1 CTTAACTCCCTAAGCAGTAGGGAAACAGGTTGAATTTAC-A-G-AT
* *
71960061 CTTAAAC-CCCTAAGCAGTAGGGTAATAGGTTGAATTTACAGAT
1 CTT-AACTCCCTAAGCAGTAGGGAAACAGGTTGAATTTACAGAT
71960104 CTTAACTCCCTAAGCAGTAGGGAAA
1 CTTAACTCCCTAAGCAGTAGGGAAA
71960129 TAGATCGAAG
Statistics
Matches: 88, Mismatches: 17, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
41 2 0.02
42 4 0.05
43 48 0.55
44 28 0.32
45 4 0.05
46 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (43 bp):
CTTAACTCCCTAAGCAGTAGGGAAACAGGTTGAATTTACAGAT
Found at i:71961840 original size:20 final size:21
Alignment explanation
Indices: 71961815--71961854 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
71961805 TTTTTATATT
*
71961815 ACTATTATTGTTA-TATTATC
1 ACTATTATTCTTACTATTATC
*
71961835 ACTATTTTTCTTACTATTAT
1 ACTATTATTCTTACTATTAT
71961855 TATTACTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ACTATTATTCTTACTATTATC
Found at i:71962044 original size:21 final size:21
Alignment explanation
Indices: 71961999--71962079 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
71961989 TTTCTCTGTT
** *
71961999 TTATTACTATTATTAATATCA
1 TTATTACTATTATTTTTATTA
*
71962020 TTATTACTATTATTTTTATTT
1 TTATTACTATTATTTTTATTA
71962041 TTATT--T-TTATTTTTATTA
1 TTATTACTATTATTTTTATTA
* * *
71962059 CTACTACTGTTATTTTTATTA
1 TTATTACTATTATTTTTATTA
71962080 ACATATTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
18 14 0.28
19 1 0.02
20 1 0.02
21 34 0.68
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.64
Consensus pattern (21 bp):
TTATTACTATTATTTTTATTA
Found at i:71962077 original size:6 final size:6
Alignment explanation
Indices: 71962029--71962057 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
71962019 ATTATTACTA
71962029 TTATTT TTATTT TTATTT TTATTT TTATT
1 TTATTT TTATTT TTATTT TTATTT TTATT
71962058 ACTACTACTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTATTT
Found at i:71962192 original size:15 final size:15
Alignment explanation
Indices: 71962172--71962202 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
71962162 TATTATTTTC
71962172 TATTTATTACTATTA
1 TATTTATTACTATTA
71962187 TATTTATTACTATTA
1 TATTTATTACTATTA
71962202 T
1 T
71962203 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:71964348 original size:21 final size:23
Alignment explanation
Indices: 71964301--71964350 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
71964291 TTTTACAACA
71964301 ATAATATAAATAATGATATGTAC
1 ATAATATAAATAATGATATGTAC
*
71964324 --AATATATAT-AT-ATATGTAC
1 ATAATATAAATAATGATATGTAC
71964343 ATAATATA
1 ATAATATA
71964351 GTTAAAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 8 0.33
20 2 0.08
21 14 0.58
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (23 bp):
ATAATATAAATAATGATATGTAC
Found at i:71965157 original size:14 final size:16
Alignment explanation
Indices: 71965123--71965163 Score: 59
Period size: 14 Copynumber: 2.7 Consensus size: 16
71965113 TTTGTTGTTT
71965123 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
*
71965139 ATTTTTTTGCT-G-AA
1 TTTTTTTTGCTGGAAA
71965153 TTTTTTTTGCT
1 TTTTTTTTGCT
71965164 CTTTTTTCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 12 0.52
15 1 0.04
16 10 0.43
ACGTcount: A:0.15, C:0.07, G:0.15, T:0.63
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:71965444 original size:30 final size:30
Alignment explanation
Indices: 71965389--71965504 Score: 121
Period size: 30 Copynumber: 3.9 Consensus size: 30
71965379 GTATTTTTTA
* *
71965389 GAAAATTT-AGGGTTAAAATGCAATTTAAG
1 GAAAGTTTAAGGGTTAAAATGAAATTTAAG
* *
71965418 GAAAGTTTAAGGGTCT-AAGTGAAATTTAAA
1 GAAAGTTTAAGGGT-TAAAATGAAATTTAAG
71965448 GAAAGTTTAAGGGTTAAAATGAAATTT-AG
1 GAAAGTTTAAGGGTTAAAATGAAATTTAAG
* ** *
71965477 GAAAAGTTTAGGGGAAAAAATGCAATTT
1 G-AAAGTTTAAGGGTTAAAATGAAATTT
71965505 TTATTTTTTA
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
29 10 0.14
30 62 0.85
31 1 0.01
ACGTcount: A:0.45, C:0.03, G:0.23, T:0.29
Consensus pattern (30 bp):
GAAAGTTTAAGGGTTAAAATGAAATTTAAG
Found at i:71965504 original size:60 final size:59
Alignment explanation
Indices: 71965388--71965504 Score: 137
Period size: 60 Copynumber: 2.0 Consensus size: 59
71965378 TGTATTTTTT
* *** *
71965388 AGAAAATTTAGGGTTAAAATGCAATTTAAGGAAAGTTTAAGGGTCTAAGTGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAAGGAAAGTTTAAGGGAAAAAATGAAATTTAA
* * *
71965447 AGAAAGTTTAAGGGTTAAAATGAAATTT-AGGAAAAGTTTAGGGGAAAAAATGCAATTT
1 AGAAAATTT-AGGGTTAAAATGAAATTTAAGG-AAAGTTTAAGGGAAAAAATGAAATTT
71965505 TTATTTTTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
59 11 0.23
60 37 0.77
ACGTcount: A:0.45, C:0.03, G:0.23, T:0.29
Consensus pattern (59 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAAGGAAAGTTTAAGGGAAAAAATGAAATTTAA
Found at i:71965528 original size:24 final size:24
Alignment explanation
Indices: 71965501--71965546 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
71965491 AAAAAATGCA
71965501 ATTTTTATTTTTTAAAAATTTTTT
1 ATTTTTATTTTTTAAAAATTTTTT
*
71965525 ATTTTTATTTTTTTAAAATTTT
1 ATTTTTATTTTTTAAAAATTTT
71965547 GAAAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (24 bp):
ATTTTTATTTTTTAAAAATTTTTT
Found at i:71965819 original size:78 final size:77
Alignment explanation
Indices: 71965699--71966017 Score: 264
Period size: 78 Copynumber: 4.2 Consensus size: 77
71965689 AAAAACAAAA
* * * * *
71965699 AAAAAATTGAAAATAGCTCAG-GATGCGACCCGAAGTTCAACTCACCTCTCG-AATTATGAGTTG
1 AAAAAATTGAAAATACCTCAGCG-TGTG-CCTGAGGCTCAACTCACCTCTCGCAA-TATGAGTTG
71965762 ATCTTTTGAAAAAGC
63 ATCTTTTGAAAAAGC
*
71965777 AAAAAATTGAAAATACCTCAGCGTGTGGCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGAT
1 AAAAAATTGAAAATACCTCAGCGTGT-GCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
71965842 TTTTTTG--AAAG-
64 TCTTTTGAAAAAGC
** * ** * **
71965853 ATTGAAATTGAAAATACCTTAATGTGT-CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
1 A-AAAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
** **
71965916 CTTTAAAAAAAAA
65 CTTTTGAAAAAGC
* * * *
71965929 AAACAGGAATTGAAATTACCTCAGCGTGT-CCCGAGGCTCAACTCACCTCTCGTAATATGAATTG
1 AAA-A--AATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
71965993 AT-TTTTGAAAAA-C
63 ATCTTTTGAAAAAGC
*
71966006 -ATAAATTGAAAA
1 AAAAAATTGAAAA
71966018 ACGGAAATCG
Statistics
Matches: 192, Mismatches: 37, Indels: 29
0.74 0.14 0.11
Matches are distributed among these distances:
73 11 0.06
75 36 0.19
76 4 0.02
77 24 0.12
78 107 0.56
79 10 0.05
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (77 bp):
AAAAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATC
TTTTGAAAAAGC
Found at i:71966143 original size:89 final size:87
Alignment explanation
Indices: 71965927--71966345 Score: 578
Period size: 87 Copynumber: 4.8 Consensus size: 87
71965917 TTTAAAAAAA
* * * * *
71965927 AAAAACAGGAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAATT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
71965992 GATTTTTGAAAAACATAAATTG
66 GATTTTTGAAAAACATAAATTG
* * * *
71966014 AAAAACGGAAATCGAAAATACCTCAACGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
71966079 GATTTTTGAAAAATATAGATTGG
66 GATTTTTGAAAAACATAAATT-G
71966102 AAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 -AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
71966167 TGA--TTT-AAAAACAGT-CATT-
65 TGATTTTTGAAAAACA-TAAATTG
* * * *
71966186 AAGAACAGAAATTAAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
71966251 GATTTTTGCAAAATATAAATTG
66 GATTTTTGAAAAACATAAATTG
* * *
71966273 AAAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
71966338 GACTTTTT
66 GA-TTTTT
71966346 TTTTTGACAA
Statistics
Matches: 292, Mismatches: 31, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
83 63 0.22
85 4 0.01
86 17 0.06
87 139 0.48
88 6 0.02
89 63 0.22
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.27
Consensus pattern (87 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACATAAATTG
Found at i:71966282 original size:14 final size:14
Alignment explanation
Indices: 71966260--71966289 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
71966250 TGATTTTTGC
*
71966260 AAAATATAAATTGA
1 AAAACATAAATTGA
71966274 AAAACATAAATTGA
1 AAAACATAAATTGA
71966288 AA
1 AA
71966290 TTACCTCAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.03, G:0.07, T:0.23
Consensus pattern (14 bp):
AAAACATAAATTGA
Found at i:71966310 original size:259 final size:255
Alignment explanation
Indices: 71965856--71966345 Score: 714
Period size: 259 Copynumber: 1.9 Consensus size: 255
71965846 TTGAAAGATT
* * * **
71965856 GAAATTGAAAATACCTTAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGACTTTA
1 GAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTA
* * * * *
71965921 AAAAAAAAAAACAGGAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATA
66 AAAAAAAAAAACAGAAATTAAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATA
*
71965986 TGAATTGATTTTTGAAAAACATAAATTGAAAAACGGAAATCGAAAATACCTCAACGTGTCCTGAG
131 TGAATTGATTTTTGAAAAACATAAATTGAAAAACAGAAATCGAAAATACCTCAACGTGTCCTGAG
* *
71966051 GCTCAATTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATAGATTGGAAAAAACA
196 GCTCAACTCACCTCTCGCAATATGAGTCGACTTTTTGAAAAATATAGATTGGAAAAAACA
*
71966110 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTA
1 GAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTA
* *
71966174 AAAACAGTCATTAAGAACAGAAATTAAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTC
66 AAAA-A---A--AAAAACAGAAATTAAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTC
* * * * * *
71966239 GCAATATGAATTGATTTTTGCAAAATATAAATTGAAAAACATAAATTGAAATTACCTCAGCGTGT
125 GCAATATGAATTGATTTTTGAAAAACATAAATTGAAAAACAGAAATCGAAAATACCTCAACGTGT
71966304 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGACTTTTT
190 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGACTTTTT
71966346 TTTTTGACAA
Statistics
Matches: 207, Mismatches: 22, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
253 8 0.04
254 55 0.27
257 1 0.00
259 138 0.67
260 5 0.02
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.28
Consensus pattern (255 bp):
GAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTA
AAAAAAAAAAACAGAAATTAAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATA
TGAATTGATTTTTGAAAAACATAAATTGAAAAACAGAAATCGAAAATACCTCAACGTGTCCTGAG
GCTCAACTCACCTCTCGCAATATGAGTCGACTTTTTGAAAAATATAGATTGGAAAAAACA
Found at i:71978462 original size:19 final size:20
Alignment explanation
Indices: 71978440--71978523 Score: 72
Period size: 19 Copynumber: 4.3 Consensus size: 20
71978430 TAATAATAAT
71978440 ATAAAATAATA-ATATGTAC
1 ATAAAATAATATATATGTAC
71978459 ATAAAAATACATATATATG--C
1 AT-AAAATA-ATATATATGTAC
*
71978479 ATATAATAA-ATATATGTA-
1 ATAAAATAATATATATGTAC
*
71978497 ATAATAATAATA-ATATCTAC
1 ATAA-AATAATATATATGTAC
71978517 AATAAAA
1 -ATAAAA
71978524 GAAAATATTA
Statistics
Matches: 53, Mismatches: 3, Indels: 17
0.73 0.04 0.23
Matches are distributed among these distances:
17 7 0.13
18 4 0.08
19 18 0.34
20 12 0.23
21 7 0.13
22 5 0.09
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (20 bp):
ATAAAATAATATATATGTAC
Found at i:71978607 original size:17 final size:17
Alignment explanation
Indices: 71978585--71978645 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
71978575 ACAATAATAT
71978585 AAAATA-ATGATATGTAC
1 AAAATATAT-ATATGTAC
71978602 AAAATATATATATGTAC
1 AAAATATATATATGTAC
*
71978619 ATAATATAGT-TA--TA-
1 AAAATATA-TATATGTAC
71978633 AAAATATATATAT
1 AAAATATATATAT
71978646 TAAATTCGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 1 0.03
14 9 0.24
15 2 0.05
17 23 0.61
18 3 0.08
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (17 bp):
AAAATATATATATGTAC
Found at i:71978866 original size:16 final size:16
Alignment explanation
Indices: 71978847--71978878 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
71978837 ATTATTGTAG
71978847 TTTTTTTAGACCAATT
1 TTTTTTTAGACCAATT
*
71978863 TTTTTTTAGCCCAATT
1 TTTTTTTAGACCAATT
71978879 ACAAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.16, G:0.06, T:0.56
Consensus pattern (16 bp):
TTTTTTTAGACCAATT
Found at i:71979388 original size:15 final size:16
Alignment explanation
Indices: 71979352--71979394 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
71979342 TTTTTGTTGT
71979352 TTTTTTTTTGCTGGAA
1 TTTTTTTTTGCTGGAA
**
71979368 AATTTTTTTGCT-GAA
1 TTTTTTTTTGCTGGAA
71979383 TTTTTTTTTGCT
1 TTTTTTTTTGCT
71979395 CTTTTTTCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.65
Consensus pattern (16 bp):
TTTTTTTTTGCTGGAA
Found at i:71979675 original size:30 final size:30
Alignment explanation
Indices: 71979620--71979712 Score: 93
Period size: 31 Copynumber: 3.1 Consensus size: 30
71979610 GTAATTTTTA
* *
71979620 GAAAATTT-AGGGT-TAAGATGCAATTTAAG
1 GAAAGTTTAAGGGTCTAAG-TGAAATTTAAG
*
71979649 GAAAGTTTAAGGGTCTAAGTGAAATTTAAAA
1 GAAAGTTTAAGGGTCTAAGTGAAATTT-AAG
* * *
71979680 AAAAGTTTAAGGGTCAAAATGAAATTT-AG
1 GAAAGTTTAAGGGTCTAAGTGAAATTTAAG
71979709 GAAA
1 GAAA
71979713 AGCTTAGGGG
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
29 11 0.21
30 12 0.23
31 30 0.57
ACGTcount: A:0.46, C:0.03, G:0.23, T:0.28
Consensus pattern (30 bp):
GAAAGTTTAAGGGTCTAAGTGAAATTTAAG
Found at i:71979729 original size:30 final size:30
Alignment explanation
Indices: 71979680--71979736 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
71979670 AAATTTAAAA
* *
71979680 AAAAGTTTAAGGGTCAAAATGAAATTTAGG
1 AAAAGCTTAAGGGTAAAAATGAAATTTAGG
* *
71979710 AAAAGCTTAGGGGTAAAAATGCAATTT
1 AAAAGCTTAAGGGTAAAAATGAAATTT
71979737 TTATTTTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.46, C:0.05, G:0.23, T:0.26
Consensus pattern (30 bp):
AAAAGCTTAAGGGTAAAAATGAAATTTAGG
Found at i:71979764 original size:24 final size:23
Alignment explanation
Indices: 71979733--71979777 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
71979723 TAAAAATGCA
71979733 ATTTTTATTTTTTAAAAATTTTTT
1 ATTTTTATTTTTT-AAAATTTTTT
*
71979757 ATTTTTATTTTTTTAAATTTT
1 ATTTTTATTTTTTAAAATTTT
71979778 GAAAATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (23 bp):
ATTTTTATTTTTTAAAATTTTTT
Found at i:71980112 original size:14 final size:13
Alignment explanation
Indices: 71980079--71980128 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
71980069 ACCTTTTTTT
*
71980079 TTTCTT-TTTTTC
1 TTTCTTCTTCTTC
71980091 TTTCTTCTTCTTC
1 TTTCTTCTTCTTC
*
71980104 TTCTCTTCTTCTCC
1 TT-TCTTCTTCTTC
71980118 TTTCTCTCTTC
1 TTTCT-TCTTC
71980129 CGTGTGAGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
12 6 0.18
13 10 0.30
14 17 0.52
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTCTTCTTCTTC
Found at i:71980114 original size:17 final size:16
Alignment explanation
Indices: 71980086--71980128 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
71980076 TTTTTTCTTT
*
71980086 TTTTCT-TTCTTCTTC
1 TTTTCTCTTCTTCTCC
71980101 TTCTTCTCTTCTTCTCC
1 TT-TTCTCTTCTTCTCC
71980118 TTTCTCTCTTC
1 TTT-TCTCTTC
71980129 CGTGTGAGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 2 0.08
16 5 0.21
17 17 0.71
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTCTCTTCTTCTCC
Found at i:71980920 original size:23 final size:22
Alignment explanation
Indices: 71980894--71980950 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
71980884 AATCTCTCAT
71980894 GTTTGAATTATAATTATCA-AGAA
1 GTTTGAATTATAA-TATCACA-AA
71980917 GTTTGAATTATAATATCACAAA
1 GTTTGAATTATAATATCACAAA
*
71980939 -TTTAAATTATAA
1 GTTTGAATTATAA
71980951 GTAATCACGA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 11 0.34
22 7 0.22
23 14 0.44
ACGTcount: A:0.46, C:0.05, G:0.09, T:0.40
Consensus pattern (22 bp):
GTTTGAATTATAATATCACAAA
Found at i:71992558 original size:14 final size:14
Alignment explanation
Indices: 71992535--71992564 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
71992525 TTGAAAATAT
71992535 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
71992549 GTTGATTTGGATTG
1 GTTGAATTGGATTG
71992563 GT
1 GT
71992565 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:71994867 original size:16 final size:15
Alignment explanation
Indices: 71994846--71994886 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
71994836 AAACAAAAGG
71994846 AAGTAATGGAGGGGAA
1 AAGTAAT-GAGGGGAA
*
71994862 AAGTAA-GATGGGAA
1 AAGTAATGAGGGGAA
71994876 AA-TAATGAGGG
1 AAGTAATGAGGG
71994887 CATAACTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 3 0.14
14 13 0.59
16 6 0.27
ACGTcount: A:0.46, C:0.00, G:0.39, T:0.15
Consensus pattern (15 bp):
AAGTAATGAGGGGAA
Found at i:71996890 original size:27 final size:26
Alignment explanation
Indices: 71996863--71996947 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
71996853 AACAGGATGA
71996863 AATTATTACCACAAACTCACAAATTG
1 AATTATTACCACAAACTCACAAATTG
** *** * *
71996889 AATTA-TAGGACGCCCTTAACAGGA-TG
1 AATTATTACCACAAAC-TCACA-AATTG
71996915 AAATTATTACCACAAACTCACAAATTG
1 -AATTATTACCACAAACTCACAAATTG
71996942 AATTAT
1 AATTAT
71996948 AGGACCAACA
Statistics
Matches: 40, Mismatches: 14, Indels: 10
0.62 0.22 0.16
Matches are distributed among these distances:
25 5 0.12
26 18 0.45
27 12 0.30
28 5 0.12
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.27
Consensus pattern (26 bp):
AATTATTACCACAAACTCACAAATTG
Found at i:71996926 original size:53 final size:53
Alignment explanation
Indices: 71996846--71996952 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
71996836 ATAACTTACC
71996846 CGCCCTTAACAGGATGAAATTATTACCACAAACTCACAAATTGAATTATAGGA
1 CGCCCTTAACAGGATGAAATTATTACCACAAACTCACAAATTGAATTATAGGA
71996899 CGCCCTTAACAGGATGAAATTATTACCACAAACTCACAAATTGAATTATAGGA
1 CGCCCTTAACAGGATGAAATTATTACCACAAACTCACAAATTGAATTATAGGA
71996952 C
1 C
71996953 CAACACTTAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.24
Consensus pattern (53 bp):
CGCCCTTAACAGGATGAAATTATTACCACAAACTCACAAATTGAATTATAGGA
Found at i:71997530 original size:103 final size:104
Alignment explanation
Indices: 71997404--71997591 Score: 263
Period size: 105 Copynumber: 1.8 Consensus size: 104
71997394 TATATATATA
* * * *
71997404 TATATATAAGTCATTAGCTTT-AA-ATATATAGAGAGACCAAATATGTAAACTTTGAAAACTAAA
1 TATATATAACTCATTACCTTTAAATATATATAGAGAGACCAAATATGTAAAATCTGAAAACTAAA
*
71997467 TTTGTTAAAAATATATAAAAAAATTTAAAATAAATATACT
66 TTTATTAAAAA-ATATAAAAAAATTTAAAATAAATATACT
** * * *
71997507 TATATATAACTCATTACCTTTAAATATATATAGAGAGACTGAATGTGTAAAATCTGAAGATTAAA
1 TATATATAACTCATTACCTTTAAATATATATAGAGAGACCAAATATGTAAAATCTGAAAACTAAA
71997572 TTTATTAAAAAATATAAAAA
66 TTTATTAAAAAATATAAAAA
71997592 TCATTAGCTT
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
103 19 0.26
104 11 0.15
105 43 0.59
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.34
Consensus pattern (104 bp):
TATATATAACTCATTACCTTTAAATATATATAGAGAGACCAAATATGTAAAATCTGAAAACTAAA
TTTATTAAAAAATATAAAAAAATTTAAAATAAATATACT
Found at i:72005406 original size:12 final size:11
Alignment explanation
Indices: 72005391--72005430 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
72005381 AAAAAACCTT
72005391 AGAAAAATGTAG
1 AGAAAAAT-TAG
*
72005403 AGAAAAATTAA
1 AGAAAAATTAG
*
72005414 AGAAAACTTAG
1 AGAAAAATTAG
72005425 AGAAAA
1 AGAAAA
72005431 TTAAACCTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
11 17 0.68
12 8 0.32
ACGTcount: A:0.65, C:0.03, G:0.17, T:0.15
Consensus pattern (11 bp):
AGAAAAATTAG
Found at i:72005432 original size:21 final size:23
Alignment explanation
Indices: 72005391--72005435 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
72005381 AAAAAACCTT
72005391 AGAAAAATGTAGAGAAAAATTAA
1 AGAAAAATGTAGAGAAAAATTAA
*
72005414 AGAAAACT-TAGAG-AAAATTAA
1 AGAAAAATGTAGAGAAAAATTAA
72005435 A
1 A
72005436 CCTAAAACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 5 0.24
23 7 0.33
ACGTcount: A:0.64, C:0.02, G:0.16, T:0.18
Consensus pattern (23 bp):
AGAAAAATGTAGAGAAAAATTAA
Found at i:72007767 original size:21 final size:23
Alignment explanation
Indices: 72007738--72007804 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
72007728 ACTTGATCAG
72007738 AATACGACACATAAAGTGCCT-A
1 AATACGACACATAAAGTGCCTGA
* *
72007760 AA-ACGACACA-AGAGGTGCTTGA
1 AATACGACACATA-AAGTGCCTGA
72007782 AATACGACACATAAAGTGCCTGA
1 AATACGACACATAAAGTGCCTGA
72007805 TCAGTAAAGC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
20 1 0.03
21 14 0.38
22 5 0.14
23 16 0.43
24 1 0.03
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.16
Consensus pattern (23 bp):
AATACGACACATAAAGTGCCTGA
Found at i:72007790 original size:23 final size:22
Alignment explanation
Indices: 72007738--72007802 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
72007728 ACTTGATCAG
72007738 AATACGACACATAAAGTGCCTA
1 AATACGACACATAAAGTGCCTA
* *
72007760 AA-ACGACACA-AGAGGTGCTTGA
1 AATACGACACATA-AAGTGCCT-A
72007782 AATACGACACATAAAGTGCCT
1 AATACGACACATAAAGTGCCT
72007803 GATCAGTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
20 1 0.03
21 14 0.40
22 5 0.14
23 14 0.40
24 1 0.03
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.17
Consensus pattern (22 bp):
AATACGACACATAAAGTGCCTA
Found at i:72009560 original size:23 final size:23
Alignment explanation
Indices: 72009528--72009587 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 23
72009518 GTAAATTAGT
*
72009528 TATTTTTATTACAAGTGTA-C-A
1 TATTTTTATTACAAATGTACCAA
*
72009549 TATCTATTTATTATAAATGTACCAA
1 TAT-T-TTTATTACAAATGTACCAA
72009574 TATTTTTATTACAA
1 TATTTTTATTACAA
72009588 TTGTCATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 3 0.09
22 1 0.03
23 22 0.69
24 2 0.06
25 4 0.12
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.48
Consensus pattern (23 bp):
TATTTTTATTACAAATGTACCAA
Found at i:72009680 original size:3 final size:3
Alignment explanation
Indices: 72009672--72009711 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
72009662 AATATGAACC
*
72009672 ATA ATA ATA ATA ATA AT- TTA ATA ATTA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA A
72009712 AATCTTAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 1 0.03
3 29 0.88
4 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:72016319 original size:19 final size:18
Alignment explanation
Indices: 72016275--72016333 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 18
72016265 ATTACTAATT
72016275 TAAAATTTTATAAAAATAAA
1 TAAAATTTT-T-AAAATAAA
*
72016295 TGAAAATTTTTAGAATAAGA
1 T-AAAATTTTTAAAATAA-A
*
72016315 TAAAATATTTAAAAATAAA
1 TAAAAT-TTTTAAAATAAA
72016334 AAATAAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 12 0.36
20 13 0.39
21 8 0.24
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (18 bp):
TAAAATTTTTAAAATAAA
Found at i:72017774 original size:40 final size:40
Alignment explanation
Indices: 72017709--72017817 Score: 109
Period size: 40 Copynumber: 2.8 Consensus size: 40
72017699 TTCATTAATT
* * * *
72017709 TTTTAAA-TTTTAAAAA-GTT-ATAAATATTTTTTTATAC
1 TTTTAAATTTTTAAAAATTTTAAAAAATAATTTTATATAC
* *
72017746 TTTTAAATATTTT-TAAATTTTAAAAAATAATTTTATATAT
1 TTTTAAAT-TTTTAAAAATTTTAAAAAATAATTTTATATAC
* *
72017786 TTTTGAATTTTTAAAAATTTTAAAAATTAATT
1 TTTTAAATTTTTAAAAATTTTAAAAAATAATT
72017818 AAATATTTAT
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
37 7 0.12
38 3 0.05
39 10 0.17
40 38 0.66
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (40 bp):
TTTTAAATTTTTAAAAATTTTAAAAAATAATTTTATATAC
Found at i:72017780 original size:30 final size:30
Alignment explanation
Indices: 72017746--72017803 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
72017736 TTTTTTATAC
72017746 TTTTAAATATTTTTAAATTTTAAAAAATAA
1 TTTTAAATATTTTTAAATTTTAAAAAATAA
* * *
72017776 TTTTATATATTTTTGAATTTTTAAAAAT
1 TTTTAAATATTTTTAAATTTTAAAAAAT
72017804 TTTAAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (30 bp):
TTTTAAATATTTTTAAATTTTAAAAAATAA
Found at i:72024949 original size:46 final size:46
Alignment explanation
Indices: 72024863--72025035 Score: 134
Period size: 46 Copynumber: 3.7 Consensus size: 46
72024853 ACTCGTAGCC
* * * **
72024863 GATGCATGTCTCAGACATGTCTTACGCCGGCT-TACATCTCAAGGCT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCT-CATCTCAAGGCT
* **
72024909 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCACTGCT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCAAGGCT
* * * * ** *
72024955 GATGTTATGTCCCGAACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCAT-CTCAAGGCT
* * *
72025003 GATACATGTCCTAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTC
72025036 ACATTACTCC
Statistics
Matches: 100, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
46 54 0.54
47 23 0.23
48 22 0.22
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCAAGGCT
Found at i:72025134 original size:135 final size:135
Alignment explanation
Indices: 72024968--72025237 Score: 531
Period size: 135 Copynumber: 2.0 Consensus size: 135
72024958 GTTATGTCCC
72024968 GAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATACATGTCCTAGACATGTCTTACACTAG
1 GAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATACATGTCCTAGACATGTCTTACACTAG
72025033 CTCACATTACTCCATACATCATGGCATGAATATCTAATTTATTTCCCATGGTTCATACAAGAATT
66 CTCACATTACTCCATACATCATGGCATGAATATCTAATTTATTTCCCATGGTTCATACAAGAATT
72025098 TTACT
131 TTACT
*
72025103 GAACATGGTCTTACATTGGCTCTCATAATGTGGCCGATACATGTCCTAGACATGTCTTACACTAG
1 GAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATACATGTCCTAGACATGTCTTACACTAG
72025168 CTCACATTACTCCATACATCATGGCATGAATATCTAATTTATTTCCCATGGTTCATACAAGAATT
66 CTCACATTACTCCATACATCATGGCATGAATATCTAATTTATTTCCCATGGTTCATACAAGAATT
72025233 TTACT
131 TTACT
72025238 TTCTTAATTA
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 134 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (135 bp):
GAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATACATGTCCTAGACATGTCTTACACTAG
CTCACATTACTCCATACATCATGGCATGAATATCTAATTTATTTCCCATGGTTCATACAAGAATT
TTACT
Found at i:72031379 original size:44 final size:46
Alignment explanation
Indices: 72031297--72031519 Score: 169
Period size: 46 Copynumber: 4.8 Consensus size: 46
72031287 GGGATAGGAT
* *
72031297 GCCGATGCTATGTCCCGGACATGGTCTTACACTAGCTTA-A-CTCGTA-
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGCTTACATCTC-AAG
* * *
72031343 GCCGATGCATGTCTCAGACATGTCTTACGCTGGCTTACATCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAG
* * * **
72031389 GCTGATGCATGTCCCAAACATGTCTTACACTAGCTCT-CGTCTCACT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCAAG
*
72031435 GCCGATGCCATGTCCC-GAACATGGTCTTACACTGGC-T-C-TCGT-AATG
1 GCCGATG-CATGTCCCAG-ACAT-GTCTTACACTAGCTTACATC-TCAA-G
* *
72031481 TGGCGATGCATGT-CTAGACATGTCTTACACTAGCTTACA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACA
72031520 ATAGTCCATA
Statistics
Matches: 142, Mismatches: 21, Indels: 27
0.75 0.11 0.14
Matches are distributed among these distances:
44 26 0.18
45 22 0.15
46 63 0.44
47 19 0.13
48 12 0.08
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAG
Found at i:72031488 original size:47 final size:45
Alignment explanation
Indices: 72031392--72031515 Score: 135
Period size: 47 Copynumber: 2.7 Consensus size: 45
72031382 TCTCAAGGCT
* *
72031392 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCACTGCC
1 GATGCATGTCCCGAACATGTCTTACACTAGCTCTCGTAT-ACTGCC
* * *
72031438 GATGCCATGTCCCGAACATGGTCTTACACTGGCTCTCGTA-ATGTGGC
1 GATG-CATGTCCCGAACAT-GTCTTACACTAGCTCTCGTATA-CTGCC
**
72031485 GATGCATGTCTAG-ACATGTCTTACACTAGCT
1 GATGCATGTCCCGAACATGTCTTACACTAGCT
72031516 TACAATAGTC
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
44 13 0.19
45 4 0.06
46 12 0.18
47 20 0.30
48 18 0.27
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCGAACATGTCTTACACTAGCTCTCGTATACTGCC
Found at i:72036720 original size:22 final size:22
Alignment explanation
Indices: 72036679--72036720 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
72036669 GCCGTGTGGC
*
72036679 AGAGGCACACGCCCATGTGAAG
1 AGAGGCACACGCCCAAGTGAAG
* *
72036701 AGAGGCACATGGCCAAGTGA
1 AGAGGCACACGCCCAAGTGA
72036721 CTAAAGCACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.24, G:0.33, T:0.10
Consensus pattern (22 bp):
AGAGGCACACGCCCAAGTGAAG
Found at i:72048980 original size:12 final size:12
Alignment explanation
Indices: 72048965--72048995 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
72048955 TTCTCTTTTA
72048965 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
72048977 TTTTTCTTTCTC
1 TTTTTCTTTCCC
72048989 TTTTTCT
1 TTTTTCT
72048996 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:72049390 original size:15 final size:14
Alignment explanation
Indices: 72049372--72049402 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
72049362 TTAATTTATT
72049372 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
72049387 TAATAATAATCTAA
1 TAATAATAATCTAA
72049401 TA
1 TA
72049403 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:72049413 original size:21 final size:20
Alignment explanation
Indices: 72049389--72049457 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
72049379 AATGCTAATA
72049389 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
72049410 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
72049429 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
72049450 ATAATAAT
1 ATAATAAT
72049458 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:72051693 original size:18 final size:18
Alignment explanation
Indices: 72051672--72051713 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
72051662 TATTCTTAAG
72051672 TAAAAATAAATAAAT-AAA
1 TAAAAATAAA-AAATGAAA
*
72051690 TAAAATTAAAAAATGAAA
1 TAAAAATAAAAAATGAAA
*
72051708 GAAAAA
1 TAAAAA
72051714 AAAGATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (18 bp):
TAAAAATAAAAAATGAAA
Found at i:72052290 original size:34 final size:34
Alignment explanation
Indices: 72052252--72052319 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
72052242 TATAGCACAA
72052252 GACTCTATTTAATGTTTAATTATATTAGGATAAT
1 GACTCTATTTAATGTTTAATTATATTAGGATAAT
72052286 GACTCTATTTAATGTTTAATTATATTAGGATAAT
1 GACTCTATTTAATGTTTAATTATATTAGGATAAT
72052320 TATTAAGGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (34 bp):
GACTCTATTTAATGTTTAATTATATTAGGATAAT
Found at i:72052373 original size:10 final size:10
Alignment explanation
Indices: 72052360--72052402 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
72052350 AGGATTTGTT
72052360 TTTATTTATC
1 TTTATTTATC
*
72052370 TTTAATTATC
1 TTTATTTATC
72052380 TTTATTTAT-
1 TTTATTTATC
72052389 TTGTATTTATC
1 TT-TATTTATC
72052400 TTT
1 TTT
72052403 TAGAATTCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.07
10 25 0.86
11 2 0.07
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (10 bp):
TTTATTTATC
Found at i:72053143 original size:18 final size:17
Alignment explanation
Indices: 72053120--72053160 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
72053110 TAATTTTTGA
72053120 AATTTCAATTTAACTTTT
1 AATTTCAATTTAA-TTTT
*
72053138 AATTTCAATTTTATTTT
1 AATTTCAATTTAATTTT
72053155 -ATTTCA
1 AATTTCA
72053161 CTCCAGATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.27
17 4 0.18
18 12 0.55
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (17 bp):
AATTTCAATTTAATTTT
Found at i:72055139 original size:46 final size:46
Alignment explanation
Indices: 72055014--72055151 Score: 224
Period size: 46 Copynumber: 3.0 Consensus size: 46
72055004 TTTCTGTCAT
* * * *
72055014 GTTGCCATGGTATCTTTCAACCATGGTCTTATTA-TTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTA-CACATTTCATATCAG
72055060 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
72055106 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
72055152 AGAGCACACT
Statistics
Matches: 87, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 1 0.01
46 86 0.99
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:72062593 original size:40 final size:40
Alignment explanation
Indices: 72062538--72062761 Score: 270
Period size: 40 Copynumber: 5.5 Consensus size: 40
72062528 TATTCGGATG
72062538 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
72062578 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
72062621 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * * *
72062661 ATGTCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * *
72062701 ATATCCGGGCTAAGACCCGAAGGAAATTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
72062741 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
72062762 ATACTTGGGT
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
39 13 0.08
40 108 0.68
41 1 0.01
43 37 0.23
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:72062681 original size:83 final size:80
Alignment explanation
Indices: 72062542--72062761 Score: 273
Period size: 83 Copynumber: 2.7 Consensus size: 80
72062532 CGGATGATAT
* **
72062542 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
72062607 TGCGAGTAGTTGCTATAC
66 TGCGAGT-GAT--TATAC
* *
72062625 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
* *
72062690 TGCTAGTGATTATAT
66 TGCGAGTGATTATAC
* * * * *
72062705 CCGGGCTAAGACCCGAAGGAAATTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
72062762 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 14 0.11
80 38 0.31
81 2 0.02
82 2 0.02
83 66 0.54
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCGAGTGATTATAC
Found at i:72070750 original size:40 final size:40
Alignment explanation
Indices: 72070694--72070874 Score: 222
Period size: 40 Copynumber: 4.5 Consensus size: 40
72070684 TATTCGGGTG
* * *
72070694 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
72070734 GTATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* ** *
72070774 ATGTCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
72070814 ATATCCGGGCTAAGACCCGAAGGAAATTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
72070854 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
72070875 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 13 0.11
40 106 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:72074090 original size:21 final size:21
Alignment explanation
Indices: 72074049--72074091 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
72074039 TGACTTAAAG
**
72074049 ATTATATTAATTTTTTAAATT
1 ATTATATTAATTGATTAAATT
72074070 ATTAT-TTAATTGATTATAATT
1 ATTATATTAATTGATTA-AATT
72074091 A
1 A
72074092 AATAATTGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTATATTAATTGATTAAATT
Found at i:72076321 original size:18 final size:19
Alignment explanation
Indices: 72076295--72076332 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
72076285 AAGCTACAAA
72076295 TATTAAGAA-ATTTGCTTC
1 TATTAAGAAGATTTGCTTC
* *
72076313 TATTTAGAAGATTTTCTTC
1 TATTAAGAAGATTTGCTTC
72076332 T
1 T
72076333 CTCATTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.50
Consensus pattern (19 bp):
TATTAAGAAGATTTGCTTC
Found at i:72087185 original size:40 final size:40
Alignment explanation
Indices: 72087102--72087364 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
72087092 TTGAATGCTG
* * * * * *
72087102 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
72087142 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
72087182 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
72087222 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
72087262 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
72087302 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
72087341 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72087365 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:72087384 original size:79 final size:80
Alignment explanation
Indices: 72087141--72087399 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
72087131 AAGTGAATAT
* * * * * * *
72087141 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
72087205 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
72087221 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
72087286 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
72087301 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
72087365 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
72087380 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
72087400 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:72096649 original size:24 final size:26
Alignment explanation
Indices: 72096615--72096662 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
72096605 TTGGATAGAA
*
72096615 ATTTTTCTGAAAAAT-TTGCATTATG
1 ATTTTTCTGAAAAATATCGCATTATG
72096640 ATTTTT-TGAAAAATATCGCATTA
1 ATTTTTCTGAAAAATATCGCATTA
72096663 ACATAATCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.46
Consensus pattern (26 bp):
ATTTTTCTGAAAAATATCGCATTATG
Found at i:72102618 original size:2 final size:2
Alignment explanation
Indices: 72102611--72102635 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
72102601 GTACTAAAAG
72102611 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
72102636 TGCAATGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:72104169 original size:4 final size:4
Alignment explanation
Indices: 72104160--72104184 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
72104150 TTATATTTGT
72104160 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
72104185 CAACTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:72109482 original size:33 final size:33
Alignment explanation
Indices: 72109440--72109503 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
72109430 ATGGGATTGG
*
72109440 CCCTACTACTCTATACTACTATTTAATTAAGGA
1 CCCTACTACTCTATACTACTACTTAATTAAGGA
72109473 CCCTACTACTCTATACTACTACTTAATTAAG
1 CCCTACTACTCTATACTACTACTTAATTAAG
72109504 TTAGAGAGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.36
Consensus pattern (33 bp):
CCCTACTACTCTATACTACTACTTAATTAAGGA
Found at i:72118323 original size:7 final size:7
Alignment explanation
Indices: 72118311--72118335 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
72118301 GAACTTTTTG
72118311 TTTTAAT
1 TTTTAAT
72118318 TTTTAAT
1 TTTTAAT
72118325 TTTTAAT
1 TTTTAAT
72118332 TTTT
1 TTTT
72118336 GGGTTTTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTAAT
Found at i:72119136 original size:24 final size:24
Alignment explanation
Indices: 72119108--72119157 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
72119098 TGTTTTAAAA
72119108 GATAATTTCATTATAGGTTAAAGT
1 GATAATTTCATTATAGGTTAAAGT
72119132 GATAATTTCATTATAGGTTAAAGT
1 GATAATTTCATTATAGGTTAAAGT
72119156 GA
1 GA
72119158 ATGGAAGCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (24 bp):
GATAATTTCATTATAGGTTAAAGT
Found at i:72121612 original size:26 final size:26
Alignment explanation
Indices: 72121581--72121688 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
72121571 TGAAATGTCC
*
72121581 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72121607 ATCATGGAGCATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
72121633 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
72121659 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72121685 ATCA
1 ATCA
72121689 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:72126596 original size:31 final size:32
Alignment explanation
Indices: 72126552--72126613 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
72126542 GTTGGATATG
72126552 CATATATGAAATGAAA-ATGA-TGAGAATTTAT
1 CATATATGAAATGAAATATGAGTG-GAATTTAT
72126583 CATATGATG-AATGAAATATGAGTGGAATTTA
1 CATAT-ATGAAATGAAATATGAGTGGAATTTA
72126614 CTTCTTAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
31 12 0.43
32 14 0.50
33 2 0.07
ACGTcount: A:0.45, C:0.03, G:0.19, T:0.32
Consensus pattern (32 bp):
CATATATGAAATGAAATATGAGTGGAATTTAT
Found at i:72127794 original size:54 final size:53
Alignment explanation
Indices: 72127690--72127818 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 53
72127680 CTTATTATTT
* * *
72127690 CAAGTTAGTGAGTTACACGGTCTAGCACACAGCCTGCGACACGACCATGTGTC
1 CAAGTCAGTGAGTTACATGGTCTAGCACACAGCCTGCGACACGACCATGTGAC
* * ** *
72127743 ACAAGTCAGAGAGTTACATGGTCTGGCACATGGCCTGCGACAC-AGCTATGTGAC
1 -CAAGTCAGTGAGTTACATGGTCTAGCACACAGCCTGCGACACGA-CCATGTGAC
*
72127797 CTAACTCAGTGAGTTACATGGT
1 C-AAGTCAGTGAGTTACATGGT
72127819 TTAAGACAGG
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.03
54 61 0.97
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (53 bp):
CAAGTCAGTGAGTTACATGGTCTAGCACACAGCCTGCGACACGACCATGTGAC
Found at i:72128916 original size:6 final size:6
Alignment explanation
Indices: 72128905--72128932 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
72128895 AAGTGACTTT
72128905 TTATAA TTATAA TTATAA TTATAA TTAT
1 TTATAA TTATAA TTATAA TTATAA TTAT
72128933 TATGTTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTATAA
Found at i:72135830 original size:22 final size:22
Alignment explanation
Indices: 72135802--72135849 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
72135792 AAACATGCTC
72135802 AAACCAATTTGGCCAATTGCCT
1 AAACCAATTTGGCCAATTGCCT
72135824 AAACCAATTTGGCCAATTGCCT
1 AAACCAATTTGGCCAATTGCCT
72135846 AAAC
1 AAAC
72135850 ACATATCCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.25
Consensus pattern (22 bp):
AAACCAATTTGGCCAATTGCCT
Found at i:72138546 original size:25 final size:25
Alignment explanation
Indices: 72138502--72138551 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
72138492 GTTAAAATAA
*
72138502 AAAAATTATAATCTT-TTTTACTTT
1 AAAAATTATAATCTTATTTAACTTT
72138526 AAAAATTAATAAT-TTAATTTAACTTT
1 AAAAATT-ATAATCTT-ATTTAACTTT
72138552 TTCTAACACA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 9 0.41
25 5 0.23
26 8 0.36
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (25 bp):
AAAAATTATAATCTTATTTAACTTT
Found at i:72138941 original size:53 final size:53
Alignment explanation
Indices: 72138861--72138984 Score: 239
Period size: 53 Copynumber: 2.3 Consensus size: 53
72138851 TAGACAGAAA
72138861 TGATGGGAAAATAGAAGAGCAATAAGTAGATAGAGCTTCACCTTTGATCAAAG
1 TGATGGGAAAATAGAAGAGCAATAAGTAGATAGAGCTTCACCTTTGATCAAAG
72138914 TGATGGGAAAATAGAAGAGCAATAAGTAGATAGAGCTTCACCTTTGATCAAAG
1 TGATGGGAAAATAGAAGAGCAATAAGTAGATAGAGCTTCACCTTTGATCAAAG
*
72138967 TGATGGGAAAATAAAAGA
1 TGATGGGAAAATAGAAGA
72138985 AAATTATACT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
53 70 1.00
ACGTcount: A:0.44, C:0.10, G:0.25, T:0.22
Consensus pattern (53 bp):
TGATGGGAAAATAGAAGAGCAATAAGTAGATAGAGCTTCACCTTTGATCAAAG
Found at i:72139111 original size:17 final size:16
Alignment explanation
Indices: 72139089--72139131 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
72139079 TTTGGTGTAA
72139089 AATTTTTTACAAAAAAT
1 AATTTTTTA-AAAAAAT
*
72139106 AATTTTTTGAAAAATAT
1 AATTTTTT-AAAAAAAT
*
72139123 ATTTTTTTA
1 AATTTTTTA
72139132 TTTTAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.04
17 21 0.91
18 1 0.04
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (16 bp):
AATTTTTTAAAAAAAT
Found at i:72139118 original size:15 final size:16
Alignment explanation
Indices: 72139100--72139129 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72139090 ATTTTTTACA
72139100 AAAAATA-ATTTTTTG
1 AAAAATATATTTTTTG
72139115 AAAAATATATTTTTT
1 AAAAATATATTTTTT
72139130 TATTTTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
AAAAATATATTTTTTG
Found at i:72142483 original size:12 final size:12
Alignment explanation
Indices: 72142466--72142490 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72142456 CATTTAAAAC
72142466 ATTAAAACAAAT
1 ATTAAAACAAAT
72142478 ATTAAAACAAAT
1 ATTAAAACAAAT
72142490 A
1 A
72142491 AAAAACAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
ATTAAAACAAAT
Found at i:72142767 original size:11 final size:11
Alignment explanation
Indices: 72142692--72142766 Score: 96
Period size: 11 Copynumber: 6.8 Consensus size: 11
72142682 AACACGACAA
*
72142692 AAAATAGCACC
1 AAAACAGCACC
72142703 AAAACAGCACC
1 AAAACAGCACC
* *
72142714 CAAACAACACC
1 AAAACAGCACC
72142725 AAAACAGCACC
1 AAAACAGCACC
*
72142736 CAAACAGCACC
1 AAAACAGCACC
* *
72142747 AAAACTGCAGC
1 AAAACAGCACC
72142758 AAAACAGCA
1 AAAACAGCA
72142767 GTGAGCTAGG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 54 1.00
ACGTcount: A:0.53, C:0.35, G:0.09, T:0.03
Consensus pattern (11 bp):
AAAACAGCACC
Found at i:72143872 original size:38 final size:40
Alignment explanation
Indices: 72143822--72144075 Score: 266
Period size: 46 Copynumber: 6.0 Consensus size: 40
72143812 CTGATATGAA
*
72143822 ATGTGTAAGACCATGGTTGAAAAATACCATGGCAACC-TG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
72143861 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----ATG
72143904 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-TG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
*
72143945 -TGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----AT--G
72143990 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC----CATG
* **
72144034 AAAAGAATAAGACCATGGTTGAAAGATACCATGGCAA-CATG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
72144075 A
1 A
72144076 CAGAAAATGA
Statistics
Matches: 187, Mismatches: 6, Indels: 44
0.79 0.03 0.19
Matches are distributed among these distances:
38 70 0.37
39 1 0.01
41 6 0.03
43 3 0.02
44 1 0.01
45 1 0.01
46 104 0.56
50 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.22
Consensus pattern (40 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
Found at i:72143928 original size:46 final size:46
Alignment explanation
Indices: 72143861--72144105 Score: 319
Period size: 46 Copynumber: 5.5 Consensus size: 46
72143851 TGGCAACCTG
*
72143861 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
72143907 TGTGTAAGACCATGGTTGAAAGATACCATGGCAA-C---C-TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* * *
72143945 TGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
72143991 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** *
72144037 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAA
* *
72144083 TGAGTAAGACCATAGTTGAAAGA
1 TGTGTAAGACCATGGTTGAAAGA
72144106 CACTATAGCA
Statistics
Matches: 176, Mismatches: 14, Indels: 18
0.85 0.07 0.09
Matches are distributed among these distances:
38 33 0.19
39 1 0.01
41 2 0.01
43 2 0.01
45 2 0.01
46 136 0.77
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:72143947 original size:84 final size:84
Alignment explanation
Indices: 72143812--72144105 Score: 419
Period size: 84 Copynumber: 3.4 Consensus size: 84
72143802 AGTGTGCTCT
*
72143812 CTGATATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
72143877 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
72143896 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
*
72143961 TGAAAGATACCATGACAAC
66 TGAAAGATACCATGGCAAC
* * *
72143980 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---TG--TAAG
72144045 ACCATGGTTGAAAGATACCATGGCAAC
58 ACCATGGTTGAAAGATACCATGGCAAC
* * * *
72144072 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
72144106 CACTATAGCA
Statistics
Matches: 190, Mismatches: 11, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
84 129 0.68
87 2 0.01
90 1 0.01
91 1 0.01
92 57 0.30
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGGCAAC
Found at i:72144048 original size:130 final size:122
Alignment explanation
Indices: 72143823--72144071 Score: 363
Period size: 130 Copynumber: 2.0 Consensus size: 122
72143813 TGATATGAAA
*
72143823 TGTGTAAGACCATGGTTGAAAAATACCATGGCAACCTGTGTGTAAGACCATGGTTGAAAGATACC
1 TGTGTAAGACCATGGTTGAAAAATACCATGACAACCTGTGTGTAAGACCATGGTTGAAAGATACC
* * **
72143888 ATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
66 ATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
72143945 TGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAGATGTGTAAGACCATGGTTGA
1 TGTGTAAGACCATGGTTGAAAAATACCATGACAACC-----T--G-TGTGTAAGACCATGGTTGA
*
72144010 AAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
58 AAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
72144072 ATGACAGAAA
Statistics
Matches: 112, Mismatches: 7, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
122 34 0.30
127 1 0.01
129 1 0.01
130 76 0.68
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.22
Consensus pattern (122 bp):
TGTGTAAGACCATGGTTGAAAAATACCATGACAACCTGTGTGTAAGACCATGGTTGAAAGATACC
ATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:72144421 original size:23 final size:25
Alignment explanation
Indices: 72144376--72144422 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
72144366 AATAAATATA
*
72144376 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
72144401 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
72144423 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:72151377 original size:171 final size:170
Alignment explanation
Indices: 72151071--72151382 Score: 410
Period size: 171 Copynumber: 1.8 Consensus size: 170
72151061 AATAAAATAC
* * * *
72151071 AACAACAAAATGTATAAATATAGTGTTTTAAAAAAATTGTCATTTTCGAAAAGAAAAAAATCACA
1 AACAACAAAAGGGATAAATATAGTGTTTTAAAAAAATTATCATTTTCAAAAAGAAAAAAATCACA
* * * *
72151136 TCTGCGACAACCGTTATGCATTACGTAACATCCACCGTATTCGCATCCGCAACACCACAACCCAA
66 TCTACGACAACCGTTATGCATTACGTAACATCCACAGTATTCGCAACCACAACACCACAACCCAA
72151201 TGTTGTTTGAATCTGACTAATTGATCGGGCTGGTTGAACT
131 TGTTGTTTGAATCTGACTAATTGATCGGGCTGGTTGAACT
*
72151241 AACAACAAAAGGGATAAATATAGTGTTTTAAAAAAAATTATGATTTTCAAAAAGAAAAAAATCAC
1 AACAACAAAAGGGATAAATATAGTGTTTT-AAAAAAATTATCATTTTCAAAAAGAAAAAAATCAC
* ** * * * * * * * *
72151306 GTCTACGACAACCGTTATGTGTTATGTAACGTCCATAGTA-TCTGTAACCATAATACCGCAATCC
65 ATCTACGACAACCGTTATGCATTACGTAACATCCACAGTATTC-GCAACCACAACACCACAACCC
*
72151370 GATGTTGTTTGAA
129 AATGTTGTTTGAA
72151383 CTGGACCTAT
Statistics
Matches: 119, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
170 29 0.24
171 90 0.76
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (170 bp):
AACAACAAAAGGGATAAATATAGTGTTTTAAAAAAATTATCATTTTCAAAAAGAAAAAAATCACA
TCTACGACAACCGTTATGCATTACGTAACATCCACAGTATTCGCAACCACAACACCACAACCCAA
TGTTGTTTGAATCTGACTAATTGATCGGGCTGGTTGAACT
Found at i:72151520 original size:32 final size:32
Alignment explanation
Indices: 72151465--72151540 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
72151455 ATTAGACCAA
* * *
72151465 GAACCGACAATTGAACAAGCTAAAAACTGATT
1 GAACTGACGATTGAACAAGCTAAAAACCGATT
* *
72151497 GAATTGATGATTGAATCAA-CTAAAAACCGATT
1 GAACTGACGATTGAA-CAAGCTAAAAACCGATT
72151529 GAACTGACGATT
1 GAACTGACGATT
72151541 AAACCGAGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
32 33 0.92
33 3 0.08
ACGTcount: A:0.43, C:0.16, G:0.17, T:0.24
Consensus pattern (32 bp):
GAACTGACGATTGAACAAGCTAAAAACCGATT
Found at i:72153022 original size:17 final size:17
Alignment explanation
Indices: 72153000--72153077 Score: 73
Period size: 17 Copynumber: 5.1 Consensus size: 17
72152990 CTATATTTCA
72153000 TGTTTGGATTTTGCATC
1 TGTTTGGATTTTGCATC
*
72153017 TGTTT-G--TTT-AATC
1 TGTTTGGATTTTGCATC
72153030 TGTTTGGATTTTGCATC
1 TGTTTGGATTTTGCATC
*
72153047 TGTTT-G--TTT-AATC
1 TGTTTGGATTTTGCATC
*
72153060 TATTTGGATTTTGCATC
1 TGTTTGGATTTTGCATC
72153077 T
1 T
72153078 TTCAACTGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
13 15 0.31
14 8 0.17
16 8 0.17
17 17 0.35
ACGTcount: A:0.14, C:0.10, G:0.19, T:0.56
Consensus pattern (17 bp):
TGTTTGGATTTTGCATC
Found at i:72153032 original size:13 final size:13
Alignment explanation
Indices: 72153014--72153065 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
72153004 TGGATTTTGC
72153014 ATCTGTTTGTTTA
1 ATCTGTTTGTTTA
*
72153027 ATCTGTTTGGATTTTGC
1 ATCTGTTT-G--TTT-A
72153044 ATCTGTTTGTTTA
1 ATCTGTTTGTTTA
*
72153057 ATCTATTTG
1 ATCTGTTTG
72153066 GATTTTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
13 16 0.50
14 4 0.12
16 4 0.12
17 8 0.25
ACGTcount: A:0.15, C:0.10, G:0.17, T:0.58
Consensus pattern (13 bp):
ATCTGTTTGTTTA
Found at i:72153036 original size:30 final size:30
Alignment explanation
Indices: 72153000--72153077 Score: 147
Period size: 30 Copynumber: 2.6 Consensus size: 30
72152990 CTATATTTCA
72153000 TGTTTGGATTTTGCATCTGTTTGTTTAATC
1 TGTTTGGATTTTGCATCTGTTTGTTTAATC
72153030 TGTTTGGATTTTGCATCTGTTTGTTTAATC
1 TGTTTGGATTTTGCATCTGTTTGTTTAATC
*
72153060 TATTTGGATTTTGCATCT
1 TGTTTGGATTTTGCATCT
72153078 TTCAACTGCT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.14, C:0.10, G:0.19, T:0.56
Consensus pattern (30 bp):
TGTTTGGATTTTGCATCTGTTTGTTTAATC
Found at i:72154487 original size:13 final size:13
Alignment explanation
Indices: 72154469--72154493 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72154459 ATTAAAACTT
72154469 AATTAATATAGTC
1 AATTAATATAGTC
72154482 AATTAATATAGT
1 AATTAATATAGT
72154494 TTTTGTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (13 bp):
AATTAATATAGTC
Found at i:72156750 original size:20 final size:20
Alignment explanation
Indices: 72156725--72156768 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
72156715 CACATAATAG
72156725 TAAACAAATAAAGGAATAAA
1 TAAACAAATAAAGGAATAAA
* *
72156745 TAAACATATAAATGAATAAA
1 TAAACAAATAAAGGAATAAA
72156765 TAAA
1 TAAA
72156769 TCATATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.68, C:0.05, G:0.07, T:0.20
Consensus pattern (20 bp):
TAAACAAATAAAGGAATAAA
Found at i:72157930 original size:16 final size:17
Alignment explanation
Indices: 72157906--72157948 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
72157896 AAGAAAAATG
*
72157906 AAGATAAAAATAAAG-A
1 AAGAAAAAAATAAAGCA
*
72157922 AAGAAAAAAAATAGAGCA
1 AAG-AAAAAAATAAAGCA
72157940 AAGAAAAAA
1 AAGAAAAAA
72157949 GAACCACCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 3 0.13
17 16 0.70
18 4 0.17
ACGTcount: A:0.77, C:0.02, G:0.14, T:0.07
Consensus pattern (17 bp):
AAGAAAAAAATAAAGCA
Found at i:72157933 original size:17 final size:18
Alignment explanation
Indices: 72157911--72157948 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
72157901 AAATGAAGAT
72157911 AAAAATAAAG-AAAGAAA
1 AAAAATAAAGCAAAGAAA
*
72157928 AAAAATAGAGCAAAGAAA
1 AAAAATAAAGCAAAGAAA
72157946 AAA
1 AAA
72157949 GAACCACCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.79, C:0.03, G:0.13, T:0.05
Consensus pattern (18 bp):
AAAAATAAAGCAAAGAAA
Found at i:72158758 original size:51 final size:50
Alignment explanation
Indices: 72158579--72158934 Score: 197
Period size: 45 Copynumber: 7.4 Consensus size: 50
72158569 GATTTGTAAT
* * * *
72158579 TTGTAGCTTAAATTTGTTCCACTGCAACTTCAGGGAAATAAGATCC--AC
1 TTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAAATAAGATCCTAAC
* * * * * *
72158627 ---TATCTTCAATCTGTTCTACTGCAATCTTCAGGGAGATAAGGT--TAA-
1 TTGTAGCTTCAATCTGCTCCACTGCAA-CTTCAAGGAAATAAGATCCTAAC
* *
72158672 -TG--GCCTT-AAGCTGCTCCACTGTAACTTCAAGGAAATAAGATCCGTAAC
1 TTGTAG-CTTCAATCTGCTCCACTGCAACTTCAAGGAAATAAGATCC-TAAC
*
72158720 TTGTAGCTTCAATCTGCTCCATTGCAACTTCAAGGAAATAAGA---T---
1 TTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAAATAAGATCCTAAC
* * * * *
72158764 TTGCTATCTTTAGTCTGCTCCTACTGCAACTT-TAGTGAGATAAGACTCGC-AAC
1 TTG-TAGCTTCAATCTGCTCC-ACTGCAACTTCAAG-GAAATAAGA-TC-CTAAC
* * *
72158817 TTTTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGAT-CT-GC
1 TTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAAATAAGATCCTAAC
* * * *
72158865 ---TATCTTCAGTCTGCTCCTACTGCAACTTCAAGGAGATAAGACTCAC-AGC
1 TTGTAGCTTCAATCTGCTCC-ACTGCAACTTCAAGGAAATAAGA-TC-CTAAC
*
72158914 TTGTAGCTTCAATCTACTCCA
1 TTGTAGCTTCAATCTGCTCCA
72158935 TAGTAAATTC
Statistics
Matches: 235, Mismatches: 38, Indels: 67
0.69 0.11 0.20
Matches are distributed among these distances:
44 17 0.07
45 64 0.27
46 57 0.24
47 5 0.02
48 2 0.01
49 5 0.02
50 4 0.02
51 50 0.21
52 29 0.12
53 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (50 bp):
TTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAAATAAGATCCTAAC
Found at i:72158807 original size:46 final size:45
Alignment explanation
Indices: 72158732--72158905 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 45
72158722 GTAGCTTCAA
*
72158732 TCTGCTCCATTGCAACTTCAAGGAAATAAGATTTGCTATCTTTAG
1 TCTGCTCCACTGCAACTTCAAGGAAATAAGATTTGCTATCTTTAG
* * * * *
72158777 TCTGCTCCTACTGCAACTT-TAGTGAGATAAGACTCGC-AACTTTTAG
1 TCTGCTCC-ACTGCAACTTCAAG-GAAATAAGATTTGCTATC-TTTAG
* * *
72158823 CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATCTGCTATCTTCAG
1 ------TCTGCTCCACTGCAACTTCAAGGAAATAAGATTTGCTATCTTTAG
*
72158874 TCTGCTCCTACTGCAACTTCAAGGAGATAAGA
1 TCTGCTCC-ACTGCAACTTCAAGGAAATAAGA
72158906 CTCACAGCTT
Statistics
Matches: 101, Mismatches: 16, Indels: 23
0.72 0.11 0.16
Matches are distributed among these distances:
45 20 0.20
46 46 0.46
51 24 0.24
52 11 0.11
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAAGGAAATAAGATTTGCTATCTTTAG
Found at i:72158825 original size:97 final size:96
Alignment explanation
Indices: 72158682--72159000 Score: 376
Period size: 97 Copynumber: 3.3 Consensus size: 96
72158672 TGGCCTTAAG
* *
72158682 CTGCTCC-ACTGTAACTTCAAGGAAATAAGA-TC-CGTAACTTGTAGCTTCAATCTGCTCCATTG
1 CTGCTCCTACTGCAACTT-AAGGAGATAAGACTCAC--AACTTGTAGCTTCAATCTGCTCCATTG
* *
72158744 CAACTTCAAGGAAATAAGATTTGCTATCTTTAGT
63 CAACTTCAGGGAAATAAGATTTGCTATCTTCAGT
* * * *
72158778 CTGCTCCTACTGCAACTTTAGTGAGATAAGACTCGCAACTTTTAGCTTCAATCTGCTCCACTGCA
1 CTGCTCCTACTGCAACTTAAG-GAGATAAGACTCACAACTTGTAGCTTCAATCTGCTCCATTGCA
*
72158843 ACTTCAGGGAAATAAGATCTGCTATCTTCAGT
65 ACTTCAGGGAAATAAGATTTGCTATCTTCAGT
* * * *
72158875 CTGCTCCTACTGCAACTTCAAGGAGATAAGACTCACAGCTTGTAGCTTCAATCTACTCCATAGTA
1 CTGCTCCTACTGCAACTT-AAGGAGATAAGACTCACAACTTGTAGCTTCAATCTGCTCCATTGCA
* * *
72158940 AATTCAGGGAAATGAGATTCGCTATCTTCAGT
65 ACTTCAGGGAAATAAGATTTGCTATCTTCAGT
* * * *
72158972 ATGCTCC-GCTGTAACTTCAGGGAGATAAG
1 CTGCTCCTACTGCAACTT-AAGGAGATAAG
72159001 GCTGGTGGCT
Statistics
Matches: 194, Mismatches: 24, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
96 28 0.14
97 161 0.83
98 4 0.02
99 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (96 bp):
CTGCTCCTACTGCAACTTAAGGAGATAAGACTCACAACTTGTAGCTTCAATCTGCTCCATTGCAA
CTTCAGGGAAATAAGATTTGCTATCTTCAGT
Found at i:72158966 original size:194 final size:184
Alignment explanation
Indices: 72158682--72159047 Score: 430
Period size: 194 Copynumber: 1.9 Consensus size: 184
72158672 TGGCCTTAAG
* * *
72158682 CTGCTCCACTGTAACTTCAAGGAAATAAGATCCGTAACTTGTAGCTTCAATCTGCTCCATTGCAA
1 CTGCTCCACTGCAACTTCAAGGAAATAAGATCCG-AACTTGTAGCTTCAATCTACTCCATAGCAA
* * * * * *
72158747 CTTCAAGGAAATAAGATTTGCTATCTTTAGTCTGCTCCTACTGCAACTTTAGTGAGATAAGACTC
65 ATTCAAGGAAATAAGATTCGCTATCTTCAGTATGCTCC-ACTGCAACTTCAGGGAGATAAG----
**
72158812 GCAACTTTTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAA-ATAAGATCTGCTATCTTCAGT
125 G---CTGGTAGCTTCAATCTGCTCCACTGCAACTTCA-GGAAGATAAGATCTGCTATCTTCAGT
* * *
72158875 CTGCTCCTACTGCAACTTCAAGGAGATAAGACTCAC-AGCTTGTAGCTTCAATCTACTCCATAGT
1 CTGCTCC-ACTGCAACTTCAAGGAAATAAGA-TC-CGAACTTGTAGCTTCAATCTACTCCATAGC
* * * *
72158939 AAATTCAGGGAAATGAGATTCGCTATCTTCAGTATGCTCCGCTGTAACTTCAGGGAGATAAGGCT
63 AAATTCAAGGAAATAAGATTCGCTATCTTCAGTATGCTCCACTGCAACTTCAGGGAGATAAGGCT
*
72159004 GGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATC
128 GGTAGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATC
72159048 CGCCACAATT
Statistics
Matches: 150, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
185 4 0.03
186 38 0.25
189 1 0.01
193 25 0.17
194 79 0.53
195 2 0.01
196 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (184 bp):
CTGCTCCACTGCAACTTCAAGGAAATAAGATCCGAACTTGTAGCTTCAATCTACTCCATAGCAAA
TTCAAGGAAATAAGATTCGCTATCTTCAGTATGCTCCACTGCAACTTCAGGGAGATAAGGCTGGT
AGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCTGCTATCTTCAGT
Found at i:72160195 original size:11 final size:11
Alignment explanation
Indices: 72160180--72160261 Score: 60
Period size: 11 Copynumber: 7.4 Consensus size: 11
72160170 CGCATTGGCC
*
72160180 TTTTCTTTTTC
1 TTTTCTTTTTA
*
72160191 TTTTCTTTTATT
1 TTTTCTTTT-TA
*
72160203 TTTTCGTTTTTG
1 TTTTC-TTTTTA
*
72160215 TTTT-TTCTTTT
1 TTTTCTT-TTTA
*
72160226 TTTTATTTTT-
1 TTTTCTTTTTA
*
72160236 TTTTGTTTTTA
1 TTTTCTTTTTA
*
72160247 TTTTGTTTTTA
1 TTTTCTTTTTA
72160258 TTTT
1 TTTT
72160262 TTTAAGGTGA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
10 11 0.18
11 34 0.55
12 13 0.21
13 4 0.06
ACGTcount: A:0.05, C:0.06, G:0.05, T:0.84
Consensus pattern (11 bp):
TTTTCTTTTTA
Found at i:72160204 original size:16 final size:15
Alignment explanation
Indices: 72160180--72160250 Score: 72
Period size: 16 Copynumber: 4.6 Consensus size: 15
72160170 CGCATTGGCC
*
72160180 TTTTCTTTTTCTTTT
1 TTTTATTTTTCTTTT
*
72160195 CTTTTATTTTTTCGTTT
1 -TTTTA-TTTTTCTTTT
*
72160212 TTGT-TTTTTCTTTT
1 TTTTATTTTTCTTTT
*
72160226 TTTTATTTTTTTTTGT
1 TTTTATTTTTCTTT-T
72160242 TTTTATTTT
1 TTTTATTTT
72160251 GTTTTTATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
14 12 0.26
15 8 0.17
16 17 0.37
17 9 0.20
ACGTcount: A:0.04, C:0.07, G:0.04, T:0.85
Consensus pattern (15 bp):
TTTTATTTTTCTTTT
Found at i:72160205 original size:1 final size:1
Alignment explanation
Indices: 72160180--72160264 Score: 53
Period size: 1 Copynumber: 85.0 Consensus size: 1
72160170 CGCATTGGCC
* * * * ** * * * *
72160180 TTTTCTTTTTCTTTTCTTTTATTTTTTCGTTTTTGTTTTTTCTTTTTTTTATTTTTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
72160245 TATTTTGTTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTT
72160265 AAGGTGAAAT
Statistics
Matches: 59, Mismatches: 25, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 59 1.00
ACGTcount: A:0.05, C:0.06, G:0.05, T:0.85
Consensus pattern (1 bp):
T
Found at i:72160261 original size:16 final size:14
Alignment explanation
Indices: 72160180--72160264 Score: 66
Period size: 14 Copynumber: 5.9 Consensus size: 14
72160170 CGCATTGGCC
*
72160180 TTTTCTTTTTCTTTT
1 TTTTATTTTT-TTTT
72160195 CTTTTATTTTTTCGTTT
1 -TTTTATTTTTT--TTT
*
72160212 TTGTT-TTTTCTTTT
1 TT-TTATTTTTTTTT
72160226 TTTTATTTTTTTTT
1 TTTTATTTTTTTTT
* * *
72160240 GTTT-TTATTTTGT
1 TTTTATTTTTTTTT
72160253 TTTTATTTTTTT
1 TTTTATTTTTTT
72160265 AAGGTGAAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
13 12 0.21
14 22 0.39
15 1 0.02
16 16 0.29
17 5 0.09
ACGTcount: A:0.05, C:0.06, G:0.05, T:0.85
Consensus pattern (14 bp):
TTTTATTTTTTTTT
Found at i:72160261 original size:26 final size:26
Alignment explanation
Indices: 72160185--72160264 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 26
72160175 TGGCCTTTTC
72160185 TTTTTCTTTTCTTTTATTTTTTCGTTTTTGT
1 TTTTTCTTTT-TTTTA--TTTT--TTTTTGT
72160216 TTTTTCTTTTTTTTATTTTTTTTTGT
1 TTTTTCTTTTTTTTATTTTTTTTTGT
72160242 TTTTAT-TTTGTTTTTATTTTTTT
1 TTTT-TCTTT-TTTTTATTTTTTT
72160265 AAGGTGAAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
26 14 0.30
27 14 0.30
28 4 0.09
30 5 0.11
31 10 0.21
ACGTcount: A:0.05, C:0.05, G:0.05, T:0.85
Consensus pattern (26 bp):
TTTTTCTTTTTTTTATTTTTTTTTGT
Found at i:72160798 original size:3 final size:3
Alignment explanation
Indices: 72160790--72160829 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
72160780 CCCCACAATC
*
72160790 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
72160830 TATTTATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:72165479 original size:4 final size:4
Alignment explanation
Indices: 72165470--72165539 Score: 50
Period size: 4 Copynumber: 16.0 Consensus size: 4
72165460 GTGCTAGAAT
* *
72165470 AATA AATA AATA AACTA AATA AATA GATA ACATGA TATA AATA ATATTA
1 AATA AATA AATA AA-TA AATA AATA AATA A-AT-A AATA AATA A-A-TA
* *
72165519 AACA AATA GAATG AATA AATA
1 AATA AATA -AATA AATA AATA
72165540 TTACGTAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
4 35 0.67
5 13 0.25
6 4 0.08
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:72165490 original size:9 final size:8
Alignment explanation
Indices: 72165470--72165539 Score: 50
Period size: 9 Copynumber: 8.0 Consensus size: 8
72165460 GTGCTAGAAT
72165470 AATAAATA
1 AATAAATA
72165478 AATAAACTA
1 AATAAA-TA
72165487 AATAAATA
1 AATAAATA
*
72165495 GATAACATGA
1 AATAA-AT-A
*
72165505 TATAAATA
1 AATAAATA
*
72165513 ATATTAAACA
1 A-A-TAAATA
*
72165523 AATAGAATG
1 AATA-AATA
72165532 AATAAATA
1 AATAAATA
72165540 TTACGTAAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
8 18 0.37
9 20 0.41
10 11 0.22
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (8 bp):
AATAAATA
Found at i:72168527 original size:29 final size:29
Alignment explanation
Indices: 72168490--72168549 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
72168480 ACATATTTAG
*
72168490 AATTTATTCCTCTATTTTT-ATTTTTAAA
1 AATTTATTCCTCTATTTTTGAATTTTAAA
*
72168518 AATTTAATTCTTCTATTTTTGAATTTTAAA
1 AATTT-ATTCCTCTATTTTTGAATTTTAAA
72168548 AA
1 AA
72168550 AAGTACAGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 5 0.18
29 13 0.46
30 10 0.36
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.57
Consensus pattern (29 bp):
AATTTATTCCTCTATTTTTGAATTTTAAA
Found at i:72170218 original size:41 final size:43
Alignment explanation
Indices: 72170161--72170244 Score: 145
Period size: 41 Copynumber: 2.0 Consensus size: 43
72170151 GGGGGCACTT
*
72170161 GTCCTGCAATAATTCAAAA-TTTAACATG-ACAAACTATTAGC
1 GTCCTGAAATAATTCAAAATTTTAACATGAACAAACTATTAGC
72170202 GTCCTGAAATAATTCAAAATTTTAACATGAACAAACTATTAGC
1 GTCCTGAAATAATTCAAAATTTTAACATGAACAAACTATTAGC
72170245 TTTATGTCGT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
41 18 0.45
42 9 0.22
43 13 0.32
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.30
Consensus pattern (43 bp):
GTCCTGAAATAATTCAAAATTTTAACATGAACAAACTATTAGC
Found at i:72194675 original size:43 final size:42
Alignment explanation
Indices: 72194628--72194722 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 42
72194618 TCTCAGACGT
* *
72194628 GGTCTTACATGTAATCAAACATCGATGCC-ACTGTCCCAAATAG
1 GGTCTTACACGAAATCAAACA-CGATGCCGA-TGTCCCAAATAG
* * *
72194671 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAAATAT
1 GGTCTTACACGAAATCAAACACGATGCCGATGTCCCAAATAG
*
72194713 GGTTTTACAC
1 GGTCTTACAC
72194723 TTAAAACAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 27 0.60
43 18 0.40
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAACACGATGCCGATGTCCCAAATAG
Found at i:72205238 original size:3 final size:3
Alignment explanation
Indices: 72205230--72205263 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
72205220 TTTATTAAAA
72205230 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC A
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC A
72205264 TTTGAAACTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:72206321 original size:2 final size:2
Alignment explanation
Indices: 72206314--72206354 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
72206304 ATAAACAAAA
* *
72206314 AG AG AG AG AG AG AG AG AG AG AG AG AC AG GG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
72206355 AGATTACTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.02, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:72210679 original size:15 final size:16
Alignment explanation
Indices: 72210659--72210688 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72210649 TCTCAATACA
72210659 AATATA-TTCATAATC
1 AATATATTTCATAATC
72210674 AATATATTTCATAAT
1 AATATATTTCATAAT
72210689 ATACAAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATTTCATAATC
Found at i:72211413 original size:22 final size:21
Alignment explanation
Indices: 72211388--72211437 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
72211378 AGCCGTGCAC
72211388 TTCTTCTCCTTTTTCCTTTTCT
1 TTCTT-TCCTTTTTCCTTTTCT
* *
72211410 TTCTTTCTTTTTTTCTTTTCTT
1 TTCTTTCCTTTTTCCTTTTC-T
72211432 TTCTTT
1 TTCTTT
72211438 GTTTAATTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (21 bp):
TTCTTTCCTTTTTCCTTTTCT
Found at i:72213282 original size:15 final size:15
Alignment explanation
Indices: 72213262--72213300 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
72213252 CTTTTTTTTG
72213262 TTTTTTTT--TGGAA
1 TTTTTTTTGCTGGAA
72213275 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
72213290 TTTTTTTTGCT
1 TTTTTTTTGCT
72213301 CTTTTTTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 8 0.33
15 16 0.67
ACGTcount: A:0.10, C:0.05, G:0.15, T:0.69
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:72213613 original size:30 final size:30
Alignment explanation
Indices: 72213514--72213613 Score: 103
Period size: 30 Copynumber: 3.4 Consensus size: 30
72213504 TTCTGAGGTT
** * *
72213514 AAATGTAATTTTTAGAAAATTTA-AGGTTA
1 AAATGTAATTTAAAGAAAGTTTAGAGGTCA
* * *
72213543 AAATGTAATATAAGGAAAGTTTAGAGGTCT
1 AAATGTAATTTAAAGAAAGTTTAGAGGTCA
* * *
72213573 AAGTGAAATTTAAAGAAAGTTTAGGGGTCA
1 AAATGTAATTTAAAGAAAGTTTAGAGGTCA
72213603 AAATGTAATTT
1 AAATGTAATTT
72213614 TTTTTATTAA
Statistics
Matches: 55, Mismatches: 15, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
29 18 0.33
30 37 0.67
ACGTcount: A:0.44, C:0.02, G:0.20, T:0.34
Consensus pattern (30 bp):
AAATGTAATTTAAAGAAAGTTTAGAGGTCA
Found at i:72214110 original size:86 final size:87
Alignment explanation
Indices: 72214009--72214168 Score: 207
Period size: 88 Copynumber: 1.8 Consensus size: 87
72213999 AATTTAAAAA
* * *
72214009 AAAAACAGAAATTG-AATAGCTC-AGCACGTAAGCTAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGAAATTGAAATACCTCGA-CACGTAACCTAAGGCTCAACTCACATCTCGCAATATGAG
72214072 TTGATTTTTGAAAACAGAACTTG
65 TTGATTTTTGAAAACAGAACTTG
** * * * *
72214095 AAAAACAGATTTTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGAAATTG-AAATACCTCGACACGTAACCTAAGGCTCAACTCACATCTCGCAATATGAG
72214160 TTGATTTTT
65 TTGATTTTT
72214169 TTGAAAAATA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
86 12 0.19
88 49 0.79
89 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (87 bp):
AAAAACAGAAATTGAAATACCTCGACACGTAACCTAAGGCTCAACTCACATCTCGCAATATGAGT
TGATTTTTGAAAACAGAACTTG
Found at i:72214314 original size:77 final size:79
Alignment explanation
Indices: 72214132--72214327 Score: 245
Period size: 77 Copynumber: 2.5 Consensus size: 79
72214122 ATGTGACCTG
* * * *
72214132 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTG--AAAAATACC
*** * *
72214197 TCAGTGTGTGATCTGA
64 TCAGCACGTGAGCTCA
* *
72214213 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTG-AAAATAGCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAAATACCTC
72214276 AGCACGTGAGC-CA
66 AGCACGTGAGCTCA
*
72214289 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
72214328 TTGAAAGGTA
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
76 2 0.02
77 52 0.51
80 47 0.46
81 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (79 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAAATACCTC
AGCACGTGAGCTCA
Found at i:72214392 original size:170 final size:167
Alignment explanation
Indices: 72214189--72214501 Score: 450
Period size: 170 Copynumber: 1.9 Consensus size: 167
72214179 TAAATTGAAA
* * *
72214189 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
*
72214254 AGACAAAAATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
66 A-ACAAAAATTGAAAATACCTCAG--CGTG-GCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
72214318 CGATTTTTTTTTGAAAGGTAGAAATTGAAAAACGGAAATTG
127 CGATTTTTTTTTGAAAGGTAGAAATTGAAAAACGGAAATTG
* *
72214359 AAAATACCTC-GACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGA
1 AAAATACCTCAG-CGTGTGACCTGAAGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGA
* * * * * * *
72214423 CAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
65 AAACAAAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCGA
72214488 TTTTTTTTTGAAAG
130 TTTTTTTTTGAAAG
72214502 ACATACCTCA
Statistics
Matches: 128, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
166 2 0.02
167 49 0.38
169 19 0.15
170 58 0.45
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (167 bp):
AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
AACAAAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
TTTTTTTTGAAAGGTAGAAATTGAAAAACGGAAATTG
Found at i:72214402 original size:250 final size:237
Alignment explanation
Indices: 72213968--72214504 Score: 669
Period size: 250 Copynumber: 2.2 Consensus size: 237
72213958 AGAAATTAAA
* ***** * *
72213968 AAGCTCAACTCACCTCTTGCAATATGAGTTGAATTTAAAAAAAAAACAGAAATTGAATAGCTCAG
1 AAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTGAAAGACAAAAATTGAATAGCTCAG
* * * *
72214033 CACGTAAGCTAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAACTTGAAA
65 CACGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAACAGAAATTGAAA
** **
72214098 AACAGATTTTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACATCTCGCAATGTGAGTTG
130 AACAGAAATTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACATCTCGCAATACGAGTTG
* * *
72214163 ATTTTTTTGAAAAATATAAATTGAAAAAAATACCTCAGTGTGTGATCTG
195 ATTTTTTTG-AAAATAGAAATTG---AAAATACCTCAGCGTGT--CCTG
72214212 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATAGCTCA
1 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTG--AATAGCTCA
* **
72214277 GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTGAAAGGTAGAAA
64 GCACGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGA----TTTTTGAAA-ACAGAAA
* * * *
72214342 TTGAAAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
124 TTGAAAAACAGAAATTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACATCTCGCAATAC
* *
72214407 GAGTTGATTTTTTTGACAATAGAAATTGAAATTACCTCAGCGTGTCCTG
189 GAGTTGATTTTTTTGAAAATAGAAATTGAAAATACCTCAGCGTGTCCTG
*
72214456 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACA
1 AAGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACA
72214505 TACCTCAGCA
Statistics
Matches: 255, Mismatches: 29, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
243 16 0.06
244 64 0.25
245 49 0.19
246 30 0.12
249 20 0.08
250 76 0.30
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (237 bp):
AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAATAGCTCAGC
ACGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAACAGAAATTGAAAA
ACAGAAATTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACATCTCGCAATACGAGTTGA
TTTTTTTGAAAATAGAAATTGAAAATACCTCAGCGTGTCCTG
Done.