Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 220 of 343
Found at i:72603372 original size:32 final size:32
Alignment explanation
Indices: 72603326--72603418 Score: 168
Period size: 32 Copynumber: 2.9 Consensus size: 32
72603316 TGTCAATCAT
* *
72603326 TTCAATATCCAACAAGTTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAACATAATAAA
72603358 TTCAATATCTAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAACATAATAAA
72603390 TTCAATATCTAACAAGCTTAAAACATAAT
1 TTCAATATCTAACAAGCTTAAAACATAAT
72603419 CAATATCTAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 59 1.00
ACGTcount: A:0.52, C:0.16, G:0.03, T:0.29
Consensus pattern (32 bp):
TTCAATATCTAACAAGCTTAAAACATAATAAA
Found at i:72603445 original size:27 final size:27
Alignment explanation
Indices: 72603327--72603431 Score: 102
Period size: 32 Copynumber: 3.5 Consensus size: 27
72603317 GTCAATCATT
* *
72603327 TCAATATCCAACAAGTTTAAAACATAATAAA
1 TCAATATCTAACAAGCTTAAAAC---AT-AA
72603358 TTCAATATCTAACAAGCTTAAAACATAATAAA
1 -TCAATATCTAACAAGCTTAAAAC---AT-AA
72603390 TTCAATATCTAACAAGCTTAAAACATAA
1 -TCAATATCTAACAAGCTTAAAACATAA
72603418 TCAATATCTAACAA
1 TCAATATCTAACAA
72603432 ATCTAAGACA
Statistics
Matches: 71, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
27 14 0.20
28 2 0.03
29 2 0.03
32 53 0.75
ACGTcount: A:0.52, C:0.17, G:0.03, T:0.28
Consensus pattern (27 bp):
TCAATATCTAACAAGCTTAAAACATAA
Found at i:72603453 original size:59 final size:62
Alignment explanation
Indices: 72603324--72603463 Score: 171
Period size: 59 Copynumber: 2.3 Consensus size: 62
72603314 ATTGTCAATC
*
72603324 ATTTCAATATCCAACAAGTTTAAAACATAATAAATTCAATATCTAACAAGCTTAAAACATAATA
1 ATTTCAATATCCAACAAGCTTAAAAC--AATAAATTCAATATCTAACAAGCTTAAAACATAATA
* * * *
72603388 AATTCAATATCTAACAAGCTTAAAAC-AT-AA-TCAATATCTAACAA-ATCTAAGACATAATA
1 ATTTCAATATCCAACAAGCTTAAAACAATAAATTCAATATCTAACAAGCT-TAAAACATAATA
*
72603447 ATTTCAAAATCCAACAA
1 ATTTCAATATCCAACAA
72603464 ACTAAAATTT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
58 1 0.01
59 39 0.58
60 2 0.03
61 2 0.03
64 23 0.34
ACGTcount: A:0.52, C:0.17, G:0.03, T:0.28
Consensus pattern (62 bp):
ATTTCAATATCCAACAAGCTTAAAACAATAAATTCAATATCTAACAAGCTTAAAACATAATA
Found at i:72605335 original size:21 final size:21
Alignment explanation
Indices: 72605311--72605355 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
72605301 TCTTAATTAT
* **
72605311 TTTAAATTTTAAAATTAAATA
1 TTTAAATTGTAAAAAAAAATA
72605332 TTTAAATTGTAAAAAAAAATA
1 TTTAAATTGTAAAAAAAAATA
72605353 TTT
1 TTT
72605356 TATTATATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
TTTAAATTGTAAAAAAAAATA
Found at i:72616613 original size:14 final size:17
Alignment explanation
Indices: 72616575--72616611 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
72616565 GATGAAGAAA
72616575 GAGAAGGACGGAAGGAG
1 GAGAAGGACGGAAGGAG
72616592 GAGAAGGACGGAAGGAG
1 GAGAAGGACGGAAGGAG
72616609 GAG
1 GAG
72616612 GAAAGACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.54, T:0.00
Consensus pattern (17 bp):
GAGAAGGACGGAAGGAG
Found at i:72620347 original size:26 final size:26
Alignment explanation
Indices: 72620318--72620371 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
72620308 TTTATATTAG
* *
72620318 TATTTATATATTTAAATAAATTAAAA
1 TATTTATAAAATTAAATAAATTAAAA
* * *
72620344 TATTTTTAAAATTAATTAATTTAAAA
1 TATTTATAAAATTAAATAAATTAAAA
72620370 TA
1 TA
72620372 CTAGCAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
TATTTATAAAATTAAATAAATTAAAA
Found at i:72620993 original size:19 final size:19
Alignment explanation
Indices: 72620955--72620993 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
72620945 TCATTATTGA
*
72620955 TTTTATTATTTTAAATATT
1 TTTTATTATTTTAAAGATT
72620974 TTTTATTA-TTTATAAGATT
1 TTTTATTATTTTA-AAGATT
72620993 T
1 T
72620994 ATCACATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTTATTATTTTAAAGATT
Found at i:72622835 original size:46 final size:46
Alignment explanation
Indices: 72622768--72622858 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
72622758 CTTAGTAAGT
72622768 TTAACCCAGATTGCCTTAAAGCATTTGTTAAATGTCTCATCATCTA
1 TTAACCCAGATTGCCTTAAAGCATTTGTTAAATGTCTCATCATCTA
72622814 TTAACCCAGATTGCCTTAAAGCATTTGTTAAATGTCTCATCATCT
1 TTAACCCAGATTGCCTTAAAGCATTTGTTAAATGTCTCATCATCT
72622859 TGAAGATTCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (46 bp):
TTAACCCAGATTGCCTTAAAGCATTTGTTAAATGTCTCATCATCTA
Found at i:72624290 original size:29 final size:30
Alignment explanation
Indices: 72624244--72624302 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
72624234 TTCCCGAGCC
*
72624244 TAGGGGTAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* *
72624274 TAGGGGCAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
72624303 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:72632225 original size:48 final size:48
Alignment explanation
Indices: 72632071--72632218 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
72632061 ATATATACAC
**
72632071 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
**
72632119 GGCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
* * **
72632167 ATCTCATACATATTTTACATTAGCCAATCAGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
72632215 ATCT
1 ATCT
72632219 TGTACATCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 90 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
Found at i:72633698 original size:23 final size:23
Alignment explanation
Indices: 72633666--72633709 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
72633656 AAAATTTCAC
* *
72633666 ACATGTAATTTCACATATAATAT
1 ACATGAAATTTAACATATAATAT
*
72633689 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
72633710 TATTTTTGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAT
Found at i:72638920 original size:47 final size:46
Alignment explanation
Indices: 72638848--72639066 Score: 171
Period size: 47 Copynumber: 4.7 Consensus size: 46
72638838 GGTAAGGTGG
* * *
72638848 CGATGCTATGTCCCAGACATAGTCTTACACTGATTCATATCTC-AAGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGACT-ATATCTCGAAGC
* *
72638895 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCATCTCGTAGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGACTAT-ATCTCGAAGC
* * * * *
72638943 CGATG-CATGTCCCAGACATATCTTACATTGGCT-TACGACTCGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGACTATA--TCTCGAAGC
* * * * *
72638989 CGATG-CATGTCCTAAACATTTCTTACACT-AGCTCTTGTCTC-AATGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGA-CT-ATATCTCGAA-GC
72639035 CGATGCCATGTCCCAGACATGGTCTTACACTG
1 CGATGCCATGTCCCAGACAT-GTCTTACACTG
72639067 GCTCTCATAA
Statistics
Matches: 137, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 56 0.41
47 61 0.45
48 17 0.12
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGACTATATCTCGAAGC
Found at i:72638992 original size:46 final size:46
Alignment explanation
Indices: 72638848--72639111 Score: 150
Period size: 47 Copynumber: 5.6 Consensus size: 46
72638838 GGTAAGGTGG
* * *
72638848 CGATGCTATGTCCCAGACATAGTCTTACACT-GAT-TCATATCTCAA-GT
1 CGATGC-ATGTCCCAGACATA-TCTTACACTGGCTCTC-GA-CTCAAGGC
* * * * *
72638895 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATC-ATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-ATCTTACACTGGCTCTCGA-CTC-AAGGC
* *
72638943 CGATGCATGTCCCAGACATATCTTACATTGGCT-TACGACTCGAGGC
1 CGATGCATGTCCCAGACATATCTTACACTGGCTCT-CGACTCAAGGC
* * * * * * *
72638989 CGATGCATGTCCTAAACATTTCTTACACTAGCTCTTGTCTCAATGC
1 CGATGCATGTCCCAGACATATCTTACACTGGCTCTCGACTCAAGGC
*
72639035 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-A-T-AATGTGGC
1 CGATG-CATGTCCCAGACAT-ATCTTACACTGGCTCTCGACTCAA---GGC
* * *
72639083 CAATGCATGTCCTAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATATCTTACACT
72639112 AGCCAACAAT
Statistics
Matches: 174, Mismatches: 29, Indels: 29
0.75 0.12 0.12
Matches are distributed among these distances:
45 4 0.02
46 68 0.39
47 71 0.41
48 29 0.17
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATATCTTACACTGGCTCTCGACTCAAGGC
Found at i:72644784 original size:18 final size:18
Alignment explanation
Indices: 72644761--72644797 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
72644751 TATCGTAACT
72644761 TAGAAAGTAATAAAGAAA
1 TAGAAAGTAATAAAGAAA
*
72644779 TAGAAAGTAATTAAGAAA
1 TAGAAAGTAATAAAGAAA
72644797 T
1 T
72644798 TAATTATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.16, T:0.22
Consensus pattern (18 bp):
TAGAAAGTAATAAAGAAA
Found at i:72661339 original size:40 final size:41
Alignment explanation
Indices: 72661282--72661365 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
72661272 GTGTCCTTAC
72661282 TTTTACTTTGGATTTTTTGGCAAGAAGTAAAAAAGTTGTCT
1 TTTTACTTTGGATTTTTTGGCAAGAAGTAAAAAAGTTGTCT
72661323 TTTTACTTTGGATTTTTTGGCAAGAAGTAAAAAAGTTGTCT
1 TTTTACTTTGGATTTTTTGGCAAGAAGTAAAAAAGTTGTCT
72661364 TT
1 TT
72661366 CTTTTCTTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.29, C:0.07, G:0.19, T:0.45
Consensus pattern (41 bp):
TTTTACTTTGGATTTTTTGGCAAGAAGTAAAAAAGTTGTCT
Found at i:72662734 original size:46 final size:46
Alignment explanation
Indices: 72662682--72662987 Score: 166
Period size: 47 Copynumber: 6.5 Consensus size: 46
72662672 TTTGTGTACT
* *
72662682 AGTGTAAGACATGTTTAGGACATGCATCGGCCACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTGATGAGAGCC
* *
72662728 AGTGTAAGACCATGTCTGGGACATGGCATCGG--CATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT--GATGAGAGCC
* * *
72662776 AGTATAAGACATGTCTGGGATATTCATCGGCCTC-TTGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTGATG-AGAGCC
* * * * *
72662822 AGTGTAAGACATGTTTGGGACATGCATCAG-CTA-T-ATGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGATGA-GAGCC
* * * *
72662866 TGTATAAGACCATGTCTGGGACATGTCATC-GCAACAGATATG-TGGGAGCC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGC--C-CAT-TGATGAGAGCC
* * ** ** *
72662916 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTAACG-TGAGATCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATTGATGAGAGCC
*
72662963 AGTGTAAGACCATGTCTGGTACATG
1 AGTGTAAGA-CATGTCTGGGACATG
72662988 GAATTGGCAT
Statistics
Matches: 201, Mismatches: 36, Indels: 46
0.71 0.13 0.16
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 10 0.05
45 20 0.10
46 51 0.25
47 55 0.27
48 26 0.13
49 2 0.01
50 28 0.14
51 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGATGAGAGCC
Found at i:72683236 original size:6 final size:6
Alignment explanation
Indices: 72683219--72683298 Score: 106
Period size: 6 Copynumber: 12.8 Consensus size: 6
72683209 TTTTAAGGTT
*
72683219 ATTTTC ATTTTTC ATTTTTC ATTTTC ATTTTC ATTTTC ATTTTTC ATTTTT
1 ATTTTC A-TTTTC A-TTTTC ATTTTC ATTTTC ATTTTC A-TTTTC ATTTTC
* *
72683270 GTTTTC GTTTTC ATTTTC ATTTTC ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTT
72683299 AGAGAAAACC
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
6 49 0.72
7 19 0.28
ACGTcount: A:0.14, C:0.14, G:0.03, T:0.70
Consensus pattern (6 bp):
ATTTTC
Found at i:72683263 original size:25 final size:25
Alignment explanation
Indices: 72683219--72683298 Score: 117
Period size: 25 Copynumber: 3.2 Consensus size: 25
72683209 TTTTAAGGTT
72683219 ATTTTCATTTTTCATTTTTCATTTTC
1 ATTTTCA-TTTTCATTTTTCATTTTC
*
72683245 ATTTTCATTTTCATTTTTCATTTTT
1 ATTTTCATTTTCATTTTTCATTTTC
* *
72683270 GTTTTCGTTTTCA-TTTTCATTTTC
1 ATTTTCATTTTCATTTTTCATTTTC
72683294 ATTTT
1 ATTTT
72683299 AGAGAAAACC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
24 14 0.29
25 28 0.57
26 7 0.14
ACGTcount: A:0.14, C:0.14, G:0.03, T:0.70
Consensus pattern (25 bp):
ATTTTCATTTTCATTTTTCATTTTC
Found at i:72693183 original size:17 final size:17
Alignment explanation
Indices: 72693161--72693201 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
72693151 TAAGCCATAG
72693161 GTTTAT-GATCGATGGGA
1 GTTTATCGA-CGATGGGA
72693178 GTTTATTCGACGATGGGA
1 GTTTA-TCGACGATGGGA
72693196 GTTTAT
1 GTTTAT
72693202 TGGTAGAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.27
18 14 0.64
19 2 0.09
ACGTcount: A:0.22, C:0.07, G:0.32, T:0.39
Consensus pattern (17 bp):
GTTTATCGACGATGGGA
Found at i:72707095 original size:12 final size:12
Alignment explanation
Indices: 72707080--72707123 Score: 79
Period size: 12 Copynumber: 3.7 Consensus size: 12
72707070 CCTCTAATTT
72707080 TACTTCTACATC
1 TACTTCTACATC
*
72707092 TACTACTACATC
1 TACTTCTACATC
72707104 TACTTCTACATC
1 TACTTCTACATC
72707116 TACTTCTA
1 TACTTCTA
72707124 TGTTAATTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.27, C:0.32, G:0.00, T:0.41
Consensus pattern (12 bp):
TACTTCTACATC
Found at i:72707783 original size:15 final size:15
Alignment explanation
Indices: 72707763--72707824 Score: 61
Period size: 15 Copynumber: 3.9 Consensus size: 15
72707753 TCGACAAGGT
72707763 AAATAAAAATATTAA
1 AAATAAAAATATTAA
72707778 AAATAAAAATATTTAA
1 AAATAAAAATA-TTAA
* * *
72707794 TTAACTAAAAAAATTCA
1 --AAATAAAAATATTAA
72707811 AAATAAGAAATATT
1 AAATAA-AAATATT
72707825 TAATTATGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
15 16 0.42
16 10 0.26
17 3 0.08
18 9 0.24
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (15 bp):
AAATAAAAATATTAA
Found at i:72707805 original size:34 final size:35
Alignment explanation
Indices: 72707767--72707841 Score: 109
Period size: 34 Copynumber: 2.2 Consensus size: 35
72707757 CAAGGTAAAT
72707767 AAAAATATTAAAAATAA-AAATATTTAATTAACTA
1 AAAAATATTAAAAATAAGAAATATTTAATTAACTA
* **
72707801 AAAAA-ATTCAAAATAAGAAATATTTAATTATGTA
1 AAAAATATTAAAAATAAGAAATATTTAATTAACTA
72707835 AAAAATA
1 AAAAATA
72707842 AAATTAGAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 10 0.28
34 25 0.69
35 1 0.03
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (35 bp):
AAAAATATTAAAAATAAGAAATATTTAATTAACTA
Found at i:72712833 original size:67 final size:67
Alignment explanation
Indices: 72712725--72712858 Score: 223
Period size: 67 Copynumber: 2.0 Consensus size: 67
72712715 TTGCCAGCAA
* * *
72712725 CAATTATCAATGGCCAACCAATCAAGCAGTGCCAGGAAGAGGAGTCGCTAGAATACATGAAGTAG
1 CAATTATCAATGGACAACCAATCAAGCAGTGCAAGGAAGAGGAGTCACTAGAATACATGAAGTAG
72712790 AT
66 AT
* *
72712792 CAATTATCAATGGACAACCAATCAAGCAGTGGAAGGAAGAGGAGTCACTGGAATACATGAAGTAG
1 CAATTATCAATGGACAACCAATCAAGCAGTGCAAGGAAGAGGAGTCACTAGAATACATGAAGTAG
72712857 AT
66 AT
72712859 GCTCTAAACT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (67 bp):
CAATTATCAATGGACAACCAATCAAGCAGTGCAAGGAAGAGGAGTCACTAGAATACATGAAGTAG
AT
Found at i:72717189 original size:22 final size:19
Alignment explanation
Indices: 72717164--72717205 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
72717154 TGATAATCAT
72717164 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
72717186 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
72717205 T
1 T
72717206 CAACTTTCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:72733439 original size:17 final size:17
Alignment explanation
Indices: 72733395--72733443 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
72733385 ATTCAAACAT
*
72733395 ATTTTTAAAATGAAAATA
1 ATTTATAAAAT-AAAATA
*
72733413 ATTCAT-AAATAAAATA
1 ATTTATAAAATAAAATA
72733429 ATTTATAAAATAAAA
1 ATTTATAAAATAAAA
72733444 CACAAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 11 0.41
17 12 0.44
18 4 0.15
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (17 bp):
ATTTATAAAATAAAATA
Found at i:72737037 original size:25 final size:27
Alignment explanation
Indices: 72737000--72737049 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
72736990 TCAAACATGC
72737000 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
72737026 ATTTCGGT-AATTTATCTCCTAGGG
1 ATTTAGGTCAATTTAACTCCTAGGG
72737050 TAAAACTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:72738572 original size:32 final size:32
Alignment explanation
Indices: 72738530--72738594 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
72738520 AATGCTTACC
72738530 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
72738562 ATGCTCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
72738594 A
1 A
72738595 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:72743435 original size:12 final size:12
Alignment explanation
Indices: 72743418--72743448 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
72743408 AGTACTACCT
72743418 CGGCCTCGACCA
1 CGGCCTCGACCA
72743430 CGGCCTCGACCA
1 CGGCCTCGACCA
72743442 CGGCCTC
1 CGGCCTC
72743449 TTCCCCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:72746615 original size:32 final size:32
Alignment explanation
Indices: 72746578--72746642 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
72746568 AATGCTTACC
72746578 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
72746610 ATGCCCATCATCTATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
72746642 A
1 A
72746643 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:72746662 original size:32 final size:31
Alignment explanation
Indices: 72746582--72746663 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 31
72746572 CTTACCATGC
* *
72746582 CCATCATCCATTAACTATTAAAATGCTAATG
1 CCATCATCTATCAACTATTAAAATGCTAATG
*
72746613 CCCATCATCTATTAACTATTAAAATGCTAAAATG
1 -CCATCATCTATCAACTATTAAAATGCT--AATG
72746647 -CATACAT-TATCAACTAT
1 CCAT-CATCTATCAACTAT
72746664 CCATCACCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
32 38 0.84
33 3 0.07
34 4 0.09
ACGTcount: A:0.40, C:0.22, G:0.05, T:0.33
Consensus pattern (31 bp):
CCATCATCTATCAACTATTAAAATGCTAATG
Found at i:72748628 original size:19 final size:17
Alignment explanation
Indices: 72748604--72748642 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
72748594 TACTATGCAC
72748604 AAATTTTATAAAATTGAAA
1 AAATTTTA-AAAATT-AAA
*
72748623 AAATTTTAACAATTAAA
1 AAATTTTAAAAATTAAA
72748640 AAA
1 AAA
72748643 AACAACATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 5 0.26
19 8 0.42
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (17 bp):
AAATTTTAAAAATTAAA
Found at i:72748641 original size:18 final size:19
Alignment explanation
Indices: 72748604--72748643 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
72748594 TACTATGCAC
*
72748604 AAATTTTATAAAATTGAAA
1 AAATTTTATAAAATTAAAA
*
72748623 AAATTTTA-ACAATTAAAA
1 AAATTTTATAAAATTAAAA
72748641 AAA
1 AAA
72748644 ACAACATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (19 bp):
AAATTTTATAAAATTAAAA
Found at i:72751050 original size:10 final size:10
Alignment explanation
Indices: 72751035--72751060 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
72751025 AAACCCAAGA
72751035 CCTTCATTTT
1 CCTTCATTTT
72751045 CCTTCATTTT
1 CCTTCATTTT
72751055 CCTTCA
1 CCTTCA
72751061 AAGTACAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.12, C:0.35, G:0.00, T:0.54
Consensus pattern (10 bp):
CCTTCATTTT
Found at i:72757826 original size:15 final size:15
Alignment explanation
Indices: 72757806--72757838 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
72757796 GAATAGGTGC
*
72757806 TTTATTTGTTATTTA
1 TTTATTTATTATTTA
72757821 TTTATTTATTATTTA
1 TTTATTTATTATTTA
72757836 TTT
1 TTT
72757839 GGTACTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTATTTATTATTTA
Found at i:72758425 original size:19 final size:19
Alignment explanation
Indices: 72758388--72758425 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
72758378 TTCATTCCAT
*
72758388 TCATATGCATTACAGTTCA
1 TCATATGCATTAAAGTTCA
*
72758407 TCATATGCATTAAATTTCA
1 TCATATGCATTAAAGTTCA
72758426 CAAAAGGACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.39
Consensus pattern (19 bp):
TCATATGCATTAAAGTTCA
Found at i:72765096 original size:44 final size:45
Alignment explanation
Indices: 72765033--72765697 Score: 179
Period size: 45 Copynumber: 14.4 Consensus size: 45
72765023 ACAGAGAATT
* * * * *
72765033 TTATCTCCTTAAAGTTGCAGTAGAGCATATTGAAGCCA-CTAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
** * *
72765077 TTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATATCAAATT
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
* * ** *
72765122 TTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGTCACAAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAG--AC-A-T--CAAATC
* * ** * ** * **
72765173 -TATACT-TCTGAAATTGCAGTAGTTCGGATAAAATCTACCATGGTGAATC
1 TTAT-CTCCCTGAAGTTGCAGTAGAGCAGATTGAA--GA-CAT--CAAATC
* * * * * *
72765222 TTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAGTCA-CTAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
* * * ** * * *
72765266 TTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAGGTAGCCAATT
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
* * * * * *
72765311 TTATCTCCCTAAAGTTGTAGTGGAGCAAATTGAAGCCA-CTAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
* * * ** * *
72765355 TTATCTCTCTAAAGTTACAGT-GAAGCAGATTGAAGGTATCCAATT
1 TTATCTCCCTGAAGTTGCAGTAG-AGCAGATTGAAGACATCAAATC
* ** * * *
72765400 TTATCTCCCTGAAGTTGTAGCGGAGTAGATTGAAGATAGCAAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
* * ** * ** *
72765445 TTATTTCCCTAAAGTTGTTGTGGAATAGATTAAAGCTACAAGTCACAAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAG--AC-A-T--CAAATC
* * * * ** *
72765496 CTATAC-CTCTGAAGTTGTAGTAG-GTCGGATCAAATCTACCATGGCAAATC
1 TTAT-CTCCCTGAAGTTGCAGTAGAG-CAGATTGAA--GA-CAT--CAAATC
* * * * *
72765546 TTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAG-C-CCTAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
* * * * * *
72765589 TTATTTCCCTGAAGTTGTAGTGGAGTAGATTGAAGATAGCAAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
** * * *
72765634 TTATCTCTTTGGAAG-TACAGTAAAGCAGATTGAAG-C-TACTAATC
1 TTATCTCCCT-GAAGTTGCAGTAGAGCAGATTGAAGACAT-CAAATC
72765678 TTATCT-CCTAGAAGTTGCAG
1 TTATCTCCCT-GAAGTTGCAG
72765698 CGGAGCAGGT
Statistics
Matches: 458, Mismatches: 128, Indels: 70
0.70 0.20 0.11
Matches are distributed among these distances:
43 43 0.09
44 117 0.26
45 164 0.36
46 6 0.01
47 4 0.01
48 2 0.00
49 9 0.02
50 74 0.16
51 38 0.08
52 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31
Consensus pattern (45 bp):
TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
Found at i:72765331 original size:89 final size:89
Alignment explanation
Indices: 72765222--72765460 Score: 354
Period size: 89 Copynumber: 2.7 Consensus size: 89
72765212 ATGGTGAATC
*
72765222 TTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAGTCACTAATCTTATCTCCCTAAAGTTACAGT
1 TTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGTCACTAATCTTATCTCCCTAAAGTTACAGT
*
72765287 GGAGCAGATTGAAGGTAGCCAATT
66 GAAGCAGATTGAAGGTAGCCAATT
* * *
72765311 TTATCTCCCTAAAGTTGTAGTGGAGCAAATTGAAGCCACTAATCTTATCTCTCTAAAGTTACAGT
1 TTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGTCACTAATCTTATCTCCCTAAAGTTACAGT
*
72765376 GAAGCAGATTGAAGGTATCCAATT
66 GAAGCAGATTGAAGGTAGCCAATT
* * * * *
72765400 TTATCTCCCTGAAGTTGTAGCGGAGTAGATTGAAGAT-AGCAAATCTTATTTCCCTAAAGTT
1 TTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAG-TCA-CTAATCTTATCTCCCTAAAGTT
72765461 GTTGTGGAAT
Statistics
Matches: 134, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
89 115 0.86
90 19 0.14
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (89 bp):
TTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGTCACTAATCTTATCTCCCTAAAGTTACAGT
GAAGCAGATTGAAGGTAGCCAATT
Found at i:72765333 original size:45 final size:44
Alignment explanation
Indices: 72765218--72765468 Score: 270
Period size: 45 Copynumber: 5.6 Consensus size: 44
72765208 TACCATGGTG
* *
72765218 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTGAA-GTCACT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGGT-ACC
**
72765262 AATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAGGTAGCC
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGGTA-CC
* * ** *
72765307 AATTTTATCTCCCTAAAGTTGTAGTGGAGCAAATTGAAGCCACT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGGTACC
* ** *
72765351 AATCTTATCTCTCTAAAGTTACAGTGAAGCAGATTGAAGGTATCC
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGGTA-CC
* * * * * *
72765396 AATTTTATCTCCCTGAAGTTGTAGCGGAGTAGATTGAAGATAGCA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGGTA-CC
* *
72765441 AATCTTATTTCCCTAAAGTTGTTGTGGA
1 AATCTTATCTCCCTAAAGTTGTAGTGGA
72765469 ATAGATTAAA
Statistics
Matches: 168, Mismatches: 36, Indels: 5
0.80 0.17 0.02
Matches are distributed among these distances:
44 71 0.42
45 97 0.58
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGGTACC
Found at i:72765604 original size:43 final size:43
Alignment explanation
Indices: 72765542--72765623 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
72765532 TACCATGGCA
72765542 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCCCT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCCCT
* * *
72765585 AATCTTATTTCCCTGAAGTTGTAGTGGAGTAGATTGAAG
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAG
72765624 ATAGCAAATC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCCCT
Found at i:72765668 original size:323 final size:323
Alignment explanation
Indices: 72765077--72765693 Score: 889
Period size: 323 Copynumber: 1.9 Consensus size: 323
72765067 GCCACTAATC
* * *
72765077 TTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATATCAAATTTTATTTCCCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAG
* *
72765142 TGGAATAGATTAAAGCTACAAGTCACAAATCTATACTTCTGAAATTGCAGTAGTTCGGATAAAAT
66 TGGAATAGATTAAAGCTACAAGTCACAAATCTATACCTCTGAAATTGCAGTAGGTCGGATAAAAT
**
72765207 CTACCATGGTGAATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAGTCACTAATCTTATCT
131 CTACCATGGCAAATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAGTCACTAATCTTATCT
* * * ** **
72765272 CCCTAAAGTTACAGTGGAGCAGATTGAAGGTAGCCAATTTTATCTCCCTAAAGTTGTAGTGGAGC
196 CCCTAAAGTTACAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTAAAGTTACAGTAAAGC
72765337 AAATTGAAGCCACTAATCTTATCTCTCTA-AAGTTACAGTGAAGCAGATTGAAGGTATCCAATT
261 AAATTGAAGCCACTAATCTTATCTC-CTAGAAGTTACAGTGAAGCAGATTGAAGGTATCCAATT
* * **
72765400 TTATCTCCCTGAAGTTGTAGCGGAGTAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTTGTTG
1 TTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAG
* * *
72765465 TGGAATAGATTAAAGCTACAAGTCACAAATCCTATACCTCTGAAGTTGTAGTAGGTCGGATCAAA
66 TGGAATAGATTAAAGCTACAAGTCACAAAT-CTATACCTCTGAAATTGCAGTAGGTCGGATAAAA
* * *
72765530 TCTACCATGGCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAG-CCCTAATCTTATT
130 TCTACCATGGCAAATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAGTCACTAATCTTATC
* ** * ** *
72765594 TCCCTGAAGTTGTAGTGGAGTAGATTGAAGATAGCAAATCTTATCTCTTTGGAAG-TACAGTAAA
195 TCCCTAAAGTTACAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCCT-AAAGTTACAGTAAA
* *
72765658 GCAGATTGAAGCTACTAATCTTATCTCCTAGAAGTT
259 GCAAATTGAAGCCACTAATCTTATCTCCTAGAAGTT
72765694 GCAGCGGAGC
Statistics
Matches: 258, Mismatches: 33, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
322 3 0.01
323 175 0.68
324 80 0.31
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (323 bp):
TTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAG
TGGAATAGATTAAAGCTACAAGTCACAAATCTATACCTCTGAAATTGCAGTAGGTCGGATAAAAT
CTACCATGGCAAATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAGTCACTAATCTTATCT
CCCTAAAGTTACAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTAAAGTTACAGTAAAGC
AAATTGAAGCCACTAATCTTATCTCCTAGAAGTTACAGTGAAGCAGATTGAAGGTATCCAATT
Found at i:72766847 original size:4 final size:4
Alignment explanation
Indices: 72766838--72766876 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
72766828 CTACAAACTG
*
72766838 TTTA TTTA TTTA TTGA TTTA TTTA -TTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
72766877 CTTTTTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:72766984 original size:15 final size:14
Alignment explanation
Indices: 72766947--72766987 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
72766937 ATTGTTGTCA
72766947 TTATTA-TTTTATT
1 TTATTATTTTTATT
*
72766960 TTA-AATTTTTATT
1 TTATTATTTTTATT
72766973 CTTATTATTTTTATT
1 -TTATTATTTTTATT
72766988 ATTCCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 3 0.13
15 9 0.39
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (14 bp):
TTATTATTTTTATT
Found at i:72771875 original size:22 final size:22
Alignment explanation
Indices: 72771835--72771945 Score: 96
Period size: 22 Copynumber: 5.0 Consensus size: 22
72771825 TAGACCACAC
* *
72771835 CAGAGAGCACCATACTGCTAAA
1 CAGAGAGCACCAAAGTGCTAAA
* * *
72771857 TAGAGAGCACCAAAGTGCTGAT
1 CAGAGAGCACCAAAGTGCTAAA
* * * *
72771879 CAGAGAGTACCGAAGTACTGAA
1 CAGAGAGCACCAAAGTGCTAAA
* *
72771901 CAGAGAGCACCAAAGTGTTGAA
1 CAGAGAGCACCAAAGTGCTAAA
* * *
72771923 CAAAGAGCACAAAAGTGTTAAA
1 CAGAGAGCACCAAAGTGCTAAA
72771945 C
1 C
72771946 CCATACAAGC
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 72 1.00
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.14
Consensus pattern (22 bp):
CAGAGAGCACCAAAGTGCTAAA
Found at i:72774511 original size:47 final size:47
Alignment explanation
Indices: 72774457--72774583 Score: 218
Period size: 47 Copynumber: 2.7 Consensus size: 47
72774447 TTAAAAAAAA
*
72774457 AGCTTATTTAACTAAAATCCTTGTTCCCCTAACGATAGTGTGAGTAT
1 AGCTTATTTAACTAAAATCCTTGTTCCCCTAACAATAGTGTGAGTAT
* * *
72774504 AGCTTATTTAACTAAAATCTTTGTTCCCCAAACAATAGTGTGCGTAT
1 AGCTTATTTAACTAAAATCCTTGTTCCCCTAACAATAGTGTGAGTAT
72774551 AGCTTATTTAACTAAAATCCTTGTTCCCCTAAC
1 AGCTTATTTAACTAAAATCCTTGTTCCCCTAAC
72774584 CAGGAAATAT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (47 bp):
AGCTTATTTAACTAAAATCCTTGTTCCCCTAACAATAGTGTGAGTAT
Found at i:72779661 original size:12 final size:12
Alignment explanation
Indices: 72779644--72779669 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
72779634 TGACAACAGG
72779644 GTGACCATCAGT
1 GTGACCATCAGT
72779656 GTGACCATCAGT
1 GTGACCATCAGT
72779668 GT
1 GT
72779670 AGCTCAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (12 bp):
GTGACCATCAGT
Found at i:72781999 original size:11 final size:11
Alignment explanation
Indices: 72781972--72782014 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
72781962 ATTGCATTAA
*
72781972 AAAATATATAC
1 AAAATATATAT
*
72781983 ATAATATATAT
1 AAAATATATAT
*
72781994 AAAATACATAT
1 AAAATATATAT
*
72782005 AATATATATA
1 AAAATATATA
72782015 CGTATTAGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATATATAT
Found at i:72784034 original size:75 final size:75
Alignment explanation
Indices: 72783644--72784080 Score: 496
Period size: 72 Copynumber: 5.8 Consensus size: 75
72783634 AGTGTGTGAT
*
72783644 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAA-ACAGAAATTGAAAATA
72783709 CCTCAGCATGTGAAC
64 CCTCAGCATGT---C
* **
72783724 C-AAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTTTTTTTTGAAAACAGAAATTGAAAAT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTTGAAAACAGAAATTGAAAAT
* *
72783788 ACCTCAACGTGTC
63 ACCTCAGCATGTC
* ** * * * * *
72783801 TTGAGGCTCAACTCATTTCTTGCAATATAAGTTGA---ATTTTGAAAAAAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
*
72783863 TCAGCGTGTC
66 TCAGCATGTC
* * *
72783873 CCGAGGCTCAACTCACCTCTCGCAATATGA---G-TTTGTTTTGAAAGACAAAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAA-ACAGAAATTGAAAATAC
72783934 CTCAGCATGTC
65 CTCAGCATGTC
* ** * *
72783945 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
72784010 TCAGCATGTC
66 TCAGCATGTC
* *
72784020 CTGAGGCTCCACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGGCAGAAATTGAAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAA-ACAGAAATTGAAAA
72784081 ACGGAAATTG
Statistics
Matches: 303, Mismatches: 42, Indels: 29
0.81 0.11 0.08
Matches are distributed among these distances:
69 1 0.00
71 8 0.03
72 107 0.35
74 10 0.03
75 70 0.23
76 10 0.03
77 1 0.00
78 28 0.09
79 29 0.10
80 26 0.09
81 13 0.04
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (75 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
TCAGCATGTC
Found at i:72784192 original size:165 final size:164
Alignment explanation
Indices: 72783921--72784226 Score: 488
Period size: 165 Copynumber: 1.9 Consensus size: 164
72783911 TGAAAGACAA
* ** **
72783921 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTTT
*
72783986 TTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCCACTCACCTCTCGCAATATGAG
66 TTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
72784051 TTGATTTTTTTGAAAGGCAGAAATTGAAAAACGG
131 TTAATTTTTTTGAAAGGCAGAAATTGAAAAACGG
* * *
72784085 AAATTGAAAATACCTCGGCGTGTGACTTAAGGCTCAACTCGCCTCTCGCAATACAAGTTGA-TTT
1 AAATTGAAAATACCTCAGCATGT--CTTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTT
*
72784149 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
64 TTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATG
72784214 AGTTAATTTTTTT
129 AGTTAATTTTTTT
72784227 AAAAATACCT
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
164 21 0.16
165 78 0.60
166 30 0.23
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (164 bp):
AAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTTT
TTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTAATTTTTTTGAAAGGCAGAAATTGAAAAACGG
Found at i:72784226 original size:76 final size:75
Alignment explanation
Indices: 72784084--72784226 Score: 198
Period size: 74 Copynumber: 1.9 Consensus size: 75
72784074 TTGAAAAACG
* * * *
72784084 GAAATTGAAAATACCTCGGCGTGTGACTTAAGGCTCAACTCGCCTCTCGCAATACAAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTAAGGCTCAACTCACCTCTCGCAATACAAGTTAATTT
72784149 TTTTGACAACA
65 TTTTGACAACA
* * **
72784160 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCTCTCGCAATACAAGTTAATTTT
72784224 TTT
66 TTT
72784227 AAAAATACCT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCTCTCGCAATACAAGTTAATTTT
TTTGACAACA
Found at i:72784255 original size:301 final size:285
Alignment explanation
Indices: 72783644--72784353 Score: 707
Period size: 301 Copynumber: 2.4 Consensus size: 285
72783634 AGTGTGTGAT
* *
72783644 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGACA-ACAGAAATTG-AAATA
* ** **
72783709 CCTCAGCATGTGAACCAAGGCTCAACTCACCTCTCGCAATACAAGTTGATTTTTTTTTTTGAAAA
63 CCTCAGCATGT---CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAATTGAAAA
* ** * *
72783774 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGCAATATAAGTTGAATT
125 CAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATACAAGTTGAATT
72783839 TTGAAAAAAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
190 TTGAAAAAAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
** * *
72783904 TTTGTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTC
255 TTAATTTT----------AATTAAAAATACCTCAGCACGTC
* **
72783945 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAA-TACC
*
72784010 TCAGCATGTCCTGAGGCTCCACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAAT
65 TCAGCATGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT----------AAT
* ** *
72784075 TGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACTTAAGGCTCAACTCGCCTCTCGCAATACA
119 TG-AAAACAGAAATTGAAAATACCTCAACGTGT--CTTAAGGCTCAACTCACCTCTCGCAATACA
* * * *
72784140 AGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
181 AGTTGA--ATTTTGAAAAAAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCT
* *
72784205 CGCAATATGAGTTAATTTT-TTTAAAAATACCTCAGCGCGTC
244 CGCAATATGAGTTAATTTTAATTAAAAATACCTCAGCACGTC
* ***
72784246 CTGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA----ACAT-ACAA-A-AAATTGACAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGA-AATACC
* * * *
72784304 TCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAATTGAATTTT
65 TCAGCATGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
72784354 GAAATAAAAC
Statistics
Matches: 348, Mismatches: 42, Indels: 45
0.80 0.10 0.10
Matches are distributed among these distances:
294 53 0.15
295 5 0.01
296 6 0.02
297 37 0.11
298 3 0.01
299 23 0.07
300 11 0.03
301 80 0.23
307 3 0.01
308 27 0.08
310 30 0.09
312 70 0.20
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (285 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATACCT
CAGCATGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAATTGAAAACAGAAA
TTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATACAAGTTGAATTTTGAAA
AAAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATT
TTAATTAAAAATACCTCAGCACGTC
Found at i:72784292 original size:61 final size:65
Alignment explanation
Indices: 72784171--72784350 Score: 199
Period size: 68 Copynumber: 2.8 Consensus size: 65
72784161 AAATTGAAAT
* ****
72784171 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-AAT-TTTTTTAA-A-AA
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATCATACAAAATACAA
* *
72784232 TACCTCAGCGCGTCCTGAGGCTCAGCTCACCTCTCGCAATATGAGTTGAA-CATACAAAAAATTG
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATCATAC--AAAA-T-
72784296 ACAA
62 ACAA
* * *
72784300 TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAATTGAAT
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAT
72784351 TTTGAAATAA
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
61 45 0.46
62 3 0.03
64 2 0.02
67 1 0.01
68 47 0.48
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (65 bp):
TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATCATACAAAATACAA
Found at i:72784697 original size:17 final size:18
Alignment explanation
Indices: 72784672--72784705 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
72784662 ATATCACTCT
72784672 TTTGCCCTTG-GTTGAGC
1 TTTGCCCTTGCGTTGAGC
*
72784689 TTTGTCCTTGCGTTGAG
1 TTTGCCCTTGCGTTGAG
72784706 GCTCTTGTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.06, C:0.21, G:0.29, T:0.44
Consensus pattern (18 bp):
TTTGCCCTTGCGTTGAGC
Found at i:72795251 original size:19 final size:19
Alignment explanation
Indices: 72795216--72795263 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
72795206 CAACAATAAT
72795216 ATAAAATA-ATGATATGTAC
1 ATAAAATATAT-ATATGTAC
72795235 A-AAATATATATATATGTAC
1 ATAAA-ATATATATATGTAC
72795254 ATAAAATATA
1 ATAAAATATA
72795264 CACTAATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.12
19 18 0.69
20 5 0.19
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (19 bp):
ATAAAATATATATATGTAC
Found at i:72795272 original size:21 final size:20
Alignment explanation
Indices: 72795235--72795277 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
72795225 TGATATGTAC
*
72795235 AAAATATATATATATGTACAT
1 AAAATATACATATATGTA-AT
72795256 AAAATATACACTA-ATGTAAT
1 AAAATATACA-TATATGTAAT
72795276 AA
1 AA
72795278 TAATTATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 14 0.70
22 2 0.10
ACGTcount: A:0.56, C:0.07, G:0.05, T:0.33
Consensus pattern (20 bp):
AAAATATACATATATGTAAT
Found at i:72795476 original size:24 final size:24
Alignment explanation
Indices: 72795345--72795493 Score: 70
Period size: 24 Copynumber: 6.3 Consensus size: 24
72795335 GGTATTTTAA
**
72795345 AATATATATATATTTATATATA-AT
1 AATATATATA-AAATATATATACAT
*
72795369 AATAT-T-TAAGA-ATATATACAT
1 AATATATATAAAATATATATACAT
* *
72795390 AAGATGATAT-AAA-ATACATACAT
1 AATAT-ATATAAAATATATATACAT
72795413 GGAATAGTATA-AGAAATATATA-AC-T
1 --AATA-TATATA-AAATATATATACAT
*
72795438 AAT-TGAATTAAAAAATATATATACAT
1 AATAT--A-TATAAAATATATATACAT
*
72795464 AATATATATAAAATACATATA-AT
1 AATATATATAAAATATATATACAT
72795487 -ATATATA
1 AATATATA
72795494 CGTATTAGAA
Statistics
Matches: 99, Mismatches: 9, Indels: 36
0.69 0.06 0.25
Matches are distributed among these distances:
20 7 0.07
21 8 0.08
22 9 0.09
23 19 0.19
24 30 0.30
25 11 0.11
26 10 0.10
27 5 0.05
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (24 bp):
AATATATATAAAATATATATACAT
Found at i:72795478 original size:11 final size:11
Alignment explanation
Indices: 72795449--72795493 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
72795439 ATTGAATTAA
72795449 AAAATATATAT
1 AAAATATATAT
72795460 ACATAATATATAT
1 A-A-AATATATAT
*
72795473 AAAATACATAT
1 AAAATATATAT
*
72795484 AATATATATA
1 AAAATATATA
72795494 CGTATTAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 17 0.59
12 2 0.07
13 10 0.34
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (11 bp):
AAAATATATAT
Found at i:72796966 original size:16 final size:16
Alignment explanation
Indices: 72796945--72796977 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
72796935 AATTAAAAAG
*
72796945 TTAGTTGAATTATTGA
1 TTAGTTCAATTATTGA
72796961 TTAGTTCAATTATTGA
1 TTAGTTCAATTATTGA
72796977 T
1 T
72796978 AAATATATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.15, T:0.52
Consensus pattern (16 bp):
TTAGTTCAATTATTGA
Found at i:72797939 original size:30 final size:30
Alignment explanation
Indices: 72797905--72797973 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
72797895 CTAGCCTTTG
*
72797905 CCACCACCAATTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
72797935 CCACCACCTACTCCATTAGCCACACTTGTT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
72797965 CCAGCACCA
1 CCACCACCA
72797974 CTTGTACCTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.26, C:0.46, G:0.07, T:0.20
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:72798501 original size:22 final size:24
Alignment explanation
Indices: 72798452--72798497 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
72798442 CTTTTTTTGT
72798452 TATTATTATATT-TTTTAATATTA
1 TATTATTATATTCTTTTAATATTA
72798475 TATTATATATATTCTTTTAATAT
1 TATTAT-TATATTCTTTTAATAT
72798498 ATTAGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATTATATTCTTTTAATATTA
Found at i:72798556 original size:25 final size:25
Alignment explanation
Indices: 72798517--72798585 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
72798507 ATTCTAAATT
* *
72798517 CTATATTACGTATATATA-TT-ATA
1 CTATATTATGTAAATATATTTAATA
* *
72798540 CTATTTTATGTAAATATCTTTAATA
1 CTATATTATGTAAATATATTTAATA
* *
72798565 CTATATTATTTATATATATTT
1 CTATATTATGTAAATATATTT
72798586 TTTTTTTTCT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
23 14 0.39
24 2 0.06
25 20 0.56
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (25 bp):
CTATATTATGTAAATATATTTAATA
Found at i:72798631 original size:22 final size:23
Alignment explanation
Indices: 72798601--72798667 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 23
72798591 TTTCTACAAG
*
72798601 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
*
72798623 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTACA
* *
72798648 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
72798668 TTTTATATCT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.30
23 6 0.16
24 8 0.22
25 12 0.32
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:72798763 original size:25 final size:24
Alignment explanation
Indices: 72798735--72798790 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
72798725 GTTATATTTT
*
72798735 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
72798760 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
72798783 CACTATTA
1 CACTATTA
72798791 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:72808662 original size:30 final size:30
Alignment explanation
Indices: 72808626--72808724 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
72808616 CTAGCCTTTG
*
72808626 CCACCACCAACTCCACTAGCCACATTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
72808656 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
72808686 CCACCACCTACTCCATTAGCCACACTTGTT
1 CCACCACCAACTCCACTAGCCACACTTGCT
72808716 CCACCACCA
1 CCACCACCA
72808725 CTTGTACCTA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.25, C:0.48, G:0.06, T:0.20
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:72809305 original size:25 final size:24
Alignment explanation
Indices: 72809277--72809331 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
72809267 TATATATTAT
*
72809277 ACTATTTTAT-GTATATACTTCAAAC
1 ACTATTATATAGTATAT--TTCAAAC
*
72809302 ACTA-TATATAGTATATTTCTAAC
1 ACTATTATATAGTATATTTCAAAC
72809325 ACTATTA
1 ACTATTA
72809332 CTATTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.38
24 6 0.23
25 10 0.38
ACGTcount: A:0.38, C:0.15, G:0.04, T:0.44
Consensus pattern (24 bp):
ACTATTATATAGTATATTTCAAAC
Found at i:72810623 original size:25 final size:25
Alignment explanation
Indices: 72810589--72810640 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
72810579 ATAAGTTTGA
72810589 AGTTTGTTTGAAGTTTAAACTTTAT
1 AGTTTGTTTGAAGTTTAAACTTTAT
72810614 AGTTTGTTTGAAGTTTAAACTTTAT
1 AGTTTGTTTGAAGTTTAAACTTTAT
72810639 AG
1 AG
72810641 ATGATATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.04, G:0.17, T:0.50
Consensus pattern (25 bp):
AGTTTGTTTGAAGTTTAAACTTTAT
Found at i:72811564 original size:3 final size:3
Alignment explanation
Indices: 72811556--72811599 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
72811546 GTTCATTCTC
72811556 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
72811600 AGGTTTGATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:72812221 original size:21 final size:20
Alignment explanation
Indices: 72812197--72812235 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
72812187 AAGAGATTTT
72812197 TTAAAATTTTAAATAACTTAA
1 TTAAAATTTTAAA-AACTTAA
*
72812218 TTAAAATTTTTAAAACTT
1 TTAAAATTTTAAAAACTT
72812236 TTATATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (20 bp):
TTAAAATTTTAAAAACTTAA
Found at i:72812238 original size:31 final size:31
Alignment explanation
Indices: 72812194--72812321 Score: 125
Period size: 31 Copynumber: 4.2 Consensus size: 31
72812184 TTAAAGAGAT
*
72812194 TTTTTAAAA-TTTTAAATAACTTAATTAAAA
1 TTTTTAAAACTTTTAAAGAACTTAATTAAAA
* * *
72812224 TTTTTAAAACTTTTATATAATTTAATTAAAA
1 TTTTTAAAACTTTTAAAGAACTTAATTAAAA
* ** *
72812255 TTTTAAAAACTTTT-AAGAGGTCTAAATAAAA
1 TTTTTAAAACTTTTAAAGAACT-TAATTAAAA
* * * *
72812286 TTTTTAAAACATTTGAAGAACTTAATGATAA
1 TTTTTAAAACTTTTAAAGAACTTAATTAAAA
72812317 TTTTT
1 TTTTT
72812322 CATATTTTTG
Statistics
Matches: 80, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
30 12 0.15
31 63 0.79
32 5 0.06
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (31 bp):
TTTTTAAAACTTTTAAAGAACTTAATTAAAA
Found at i:72818838 original size:22 final size:21
Alignment explanation
Indices: 72818782--72818838 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
72818772 GTGAGGGTCT
72818782 CACACGCCCGTGTGCCCGCCAA
1 CACACGCCCGTGTGCCCG-CAA
* *
72818804 -ACACGACCATGTGCTCCG-AA
1 CACACGCCCGTGTGC-CCGCAA
72818824 GCACACGCCCGTGTG
1 -CACACGCCCGTGTG
72818839 GAATCCCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
20 2 0.07
21 12 0.43
22 14 0.50
ACGTcount: A:0.21, C:0.42, G:0.25, T:0.12
Consensus pattern (21 bp):
CACACGCCCGTGTGCCCGCAA
Found at i:72821476 original size:99 final size:99
Alignment explanation
Indices: 72821305--72821513 Score: 400
Period size: 99 Copynumber: 2.1 Consensus size: 99
72821295 TTCTATTTAC
**
72821305 AGCCCAATACCTAAGCCCAATTACATGACCCTATAACTAATACCCTAGCCCAGTTACAAAACAGC
1 AGCCCAATTTCTAAGCCCAATTACATGACCCTATAACTAATACCCTAGCCCAGTTACAAAACAGC
72821370 CCAAAGCTCCAAGACCCAAATGGCCCAGAAACTG
66 CCAAAGCTCCAAGACCCAAATGGCCCAGAAACTG
72821404 AGCCCAATTTCTAAGCCCAATTACATGACCCTATAACTAATACCCTAGCCCAGTTACAAAACAGC
1 AGCCCAATTTCTAAGCCCAATTACATGACCCTATAACTAATACCCTAGCCCAGTTACAAAACAGC
72821469 CCAAAGCTCCAAGACCCAAATGGCCCAGAAACTG
66 CCAAAGCTCCAAGACCCAAATGGCCCAGAAACTG
72821503 AGCCCAATTTC
1 AGCCCAATTTC
72821514 GGTAAACCCT
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 108 1.00
ACGTcount: A:0.37, C:0.34, G:0.12, T:0.17
Consensus pattern (99 bp):
AGCCCAATTTCTAAGCCCAATTACATGACCCTATAACTAATACCCTAGCCCAGTTACAAAACAGC
CCAAAGCTCCAAGACCCAAATGGCCCAGAAACTG
Found at i:72824300 original size:131 final size:132
Alignment explanation
Indices: 72824108--72824345 Score: 304
Period size: 131 Copynumber: 1.8 Consensus size: 132
72824098 GTAATTCGTG
* * * * * *
72824108 GAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCATTTACTCAAAGTAATCGAAGGTCCCTTTA
1 GAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCATCTACTCAAAATAATCAAAGATCCCTTCA
* *
72824173 GA-ATTTCAC-CTATGTCTTTTAAAAATCCCTT-GAACGAAGGCGATGTACTATATTTGGCAATT
66 -ACATTTCACTC-ATGTCTTCTAAAAATCCCTTAAAACGAAGGCGATGTACTATATTTGGCAATT
72824235 CACA
129 CACA
* * *
72824239 GAATCGTGCCCTAATGTGCTGGGTTGCAATTTCTCGTCTACGT-AAAATAATCAAATATCCCTTC
1 GAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCATCTAC-TCAAAATAATCAAAGATCCCTTC
* *
72824303 AACATTTCACTCGTGTCTTCTAAAAATCCGTTAAAACGAAGGC
65 AACATTTCACTCATGTCTTCTAAAAATCCCTTAAAACGAAGGC
72824346 AATATTCGGT
Statistics
Matches: 90, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
130 1 0.01
131 78 0.87
132 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (132 bp):
GAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCATCTACTCAAAATAATCAAAGATCCCTTCA
ACATTTCACTCATGTCTTCTAAAAATCCCTTAAAACGAAGGCGATGTACTATATTTGGCAATTCA
CA
Found at i:72824442 original size:131 final size:129
Alignment explanation
Indices: 72824307--72824581 Score: 295
Period size: 129 Copynumber: 2.1 Consensus size: 129
72824297 CCCTTCAACA
* * *
72824307 TTTCACTCGTGTCTT-CTAAAAATCCGTT-AAAACGAAGGCAATATTCGGTGTTCGACAATTTGG
1 TTTCACTCATGT-TTGCTAAAAA-CCGTTCAAAACG-AGG-AATATTCGATGTTCGACAATTTGA
* *
72824370 GAATCATGCCCTATCGTGCTGGGTTGTGATT-TCTCGTTTGCTCAAAACAATCGAATATTCCTTT
62 GAATCATGCCCTATCGTGCTGGGTTGCGATTCCCT-GTTTGCTCAAAACAATCGAATATTCCTTT
72824434 AGGT
126 AGGT
* * * * * * ***
72824438 TTTCACTCATGTTTGTTAAGAACCTTTCAAAACGAGGAATGTTTGATGTTTGGTGATTTGAGAAT
1 TTTCACTCATGTTTGCTAAAAACCGTTCAAAACGAGGAATATTCGATGTTCGACAATTTGAGAAT
* * * * **
72824503 CGTGTCCTATCGTGTTGGGTTGCGATTCCCTGTTTGTTCAAAACAATCGAATATTCCTTTAAGAA
66 CATGCCCTATCGTGCTGGGTTGCGATTCCCTGTTTGCTCAAAACAATCGAATATTCCTTT-AGGT
72824568 TTTCACTCATGTTT
1 TTTCACTCATGTTT
72824582 TTTTAAATTC
Statistics
Matches: 120, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
129 71 0.59
130 27 0.22
131 22 0.18
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (129 bp):
TTTCACTCATGTTTGCTAAAAACCGTTCAAAACGAGGAATATTCGATGTTCGACAATTTGAGAAT
CATGCCCTATCGTGCTGGGTTGCGATTCCCTGTTTGCTCAAAACAATCGAATATTCCTTTAGGT
Found at i:72826154 original size:16 final size:16
Alignment explanation
Indices: 72826129--72826180 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
72826119 AAAAATGTTG
*
72826129 TAAAAATGTAATAAAA
1 TAAAATTGTAATAAAA
* *
72826145 TAAAATTGTAAATTAAT
1 TAAAATTGT-AATAAAA
*
72826162 TAAAATAGGTAATAAAA
1 TAAAAT-TGTAATAAAA
72826179 TA
1 TA
72826181 CATAGTGGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
16 8 0.29
17 18 0.64
18 2 0.07
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (16 bp):
TAAAATTGTAATAAAA
Found at i:72828758 original size:14 final size:15
Alignment explanation
Indices: 72828726--72828761 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
72828716 AACAGAAAAA
72828726 AAAAGAAAAGAAGGG
1 AAAAGAAAAGAAGGG
*
72828741 AAAAGGAAAGAA-GG
1 AAAAGAAAAGAAGGG
72828755 AAAAGAA
1 AAAAGAA
72828762 GAAAAAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAGAAGGG
Found at i:72832225 original size:77 final size:78
Alignment explanation
Indices: 72832086--72832237 Score: 263
Period size: 77 Copynumber: 2.0 Consensus size: 78
72832076 TTGGCTAAGC
72832086 AATCTGCAACTTGGTTATTCTCCTTAAAAATGTGCCTTAAAAGCCATTGACCTTCATGAGACATA
1 AATCTGCAACTTGGTTATTCTCCTTAAAAATGTGCCTTAAAAGCCATTGACCTTCATGAGACATA
72832151 ATGCGTAGGAAGT
66 ATGCGTAGGAAGT
* *
72832164 AATCTGTAACTTGGTTATTCTTCC-TAGAAATGTG-CTTAAAAGCCATTGACCTTCATGAGACAT
1 AATCTGCAACTTGGTTATTC-TCCTTAAAAATGTGCCTTAAAAGCCATTGACCTTCATGAGACAT
72832227 AATGCGTAGGA
65 AATGCGTAGGA
72832238 TCCTTCTGAT
Statistics
Matches: 71, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
77 40 0.56
78 28 0.39
79 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (78 bp):
AATCTGCAACTTGGTTATTCTCCTTAAAAATGTGCCTTAAAAGCCATTGACCTTCATGAGACATA
ATGCGTAGGAAGT
Found at i:72834058 original size:12 final size:12
Alignment explanation
Indices: 72834041--72834106 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
72834031 TTTTTAGTCA
*
72834041 TATATTATTCAT
1 TATATTATACAT
**
72834053 TATATTAT-TTT
1 TATATTATACAT
72834064 TATTATTATACAT
1 TA-TATTATACAT
* *
72834077 TTTATTTATAAAT
1 TATA-TTATACAT
*
72834090 TTTATTATACAT
1 TATATTATACAT
72834102 TATAT
1 TATAT
72834107 ATTTTACTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
11 3 0.07
12 27 0.63
13 13 0.30
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.61
Consensus pattern (12 bp):
TATATTATACAT
Found at i:72834324 original size:10 final size:10
Alignment explanation
Indices: 72834257--72834328 Score: 53
Period size: 10 Copynumber: 7.2 Consensus size: 10
72834247 TATATGATAG
72834257 TTATCATATTA
1 TTAT-ATATTA
72834268 TTATAT-TTCA
1 TTATATATT-A
72834278 TTATAT-TTA
1 TTATATATTA
72834287 TTTATATATT-
1 -TTATATATTA
* *
72834297 TTGT-TACATA
1 TTATATA-TTA
*
72834307 TCATATATTA
1 TTATATATTA
72834317 TTATATATTA
1 TTATATATTA
72834327 TT
1 TT
72834329 CCCTATATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
8 2 0.04
9 7 0.14
10 32 0.65
11 8 0.16
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (10 bp):
TTATATATTA
Found at i:72846271 original size:44 final size:44
Alignment explanation
Indices: 72846210--72846614 Score: 491
Period size: 44 Copynumber: 9.5 Consensus size: 44
72846200 GGGACAATGT
* * * * *
72846210 AGATCAAAAATAGCAGATGTGGCGTCTCTGTATTGTCAGAGAGT
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* *
72846254 AGATCGAAGATAGCAGATTTGACATCTCTGTATTGTCAGAGAGT
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
** * *
72846298 AGATTAAAGATAGCAGATTTGGCATCTCTGTATTATCAAAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
72846342 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
72846386 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
72846430 AGATC-------G-AG----GGCATCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
*
72846462 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * *
72846506 AGATCGAAGATAGAAGATTTGACGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * * *
72846550 AGATC-AGAGATAGCAGATTTAGCGTCTCTGTGTTGAT-AG-GAAGT
1 AGATCGA-AGATAGCAGATTTGGCATCTCTGTATTG-TCAGAG-AGC
72846594 AGAGT-GAAGATAGCAGATTTG
1 AGA-TCGAAGATAGCAGATTTG
72846615 ACATTCTTGA
Statistics
Matches: 320, Mismatches: 24, Indels: 34
0.85 0.06 0.09
Matches are distributed among these distances:
32 29 0.09
36 2 0.01
37 1 0.00
39 1 0.00
40 2 0.01
43 2 0.01
44 280 0.88
45 3 0.01
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (44 bp):
AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
Found at i:72846444 original size:32 final size:32
Alignment explanation
Indices: 72846406--72846468 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
72846396 TAGCAGATTT
72846406 GGCATCTCTGTATTGTCAGAGAGCAGATCGAG
1 GGCATCTCTGTATTGTCAGAGAGCAGATCGAG
72846438 GGCATCTCTGTATTGTCAGAGAGCAGATCGA
1 GGCATCTCTGTATTGTCAGAGAGCAGATCGA
72846469 AGATAGCAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (32 bp):
GGCATCTCTGTATTGTCAGAGAGCAGATCGAG
Found at i:72846451 original size:76 final size:76
Alignment explanation
Indices: 72846362--72846512 Score: 293
Period size: 76 Copynumber: 2.0 Consensus size: 76
72846352 TAGCAGATTT
72846362 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
1 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
72846427 AGCAGATCGAG
66 AGCAGATCGAG
*
72846438 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAG
1 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
72846503 AGCAGATCGA
66 AGCAGATCGA
72846513 AGATAGAAGA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (76 bp):
GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
AGCAGATCGAG
Found at i:72846477 original size:120 final size:120
Alignment explanation
Indices: 72846318--72846554 Score: 420
Period size: 120 Copynumber: 2.0 Consensus size: 120
72846308 TAGCAGATTT
72846318 GGCATCTCTGTATTATCAAAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
1 GGCATCTCTGTATTATCAAAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
* *
72846383 AGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAG
66 AGCAGATCGAAGATAGAAGATTTGACATCTCTGTATTGTCAGAGAGCAGATCGAG
* * *
72846438 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAG
1 GGCATCTCTGTATTATCAAAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
*
72846503 AGCAGATCGAAGATAGAAGATTTGACGTCTCTGTATTGTCAGAGAGCAGATC
66 AGCAGATCGAAGATAGAAGATTTGACATCTCTGTATTGTCAGAGAGCAGATC
72846555 AGAGATAGCA
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 111 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (120 bp):
GGCATCTCTGTATTATCAAAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
AGCAGATCGAAGATAGAAGATTTGACATCTCTGTATTGTCAGAGAGCAGATCGAG
Found at i:72846547 original size:164 final size:164
Alignment explanation
Indices: 72846276--72846580 Score: 495
Period size: 164 Copynumber: 1.9 Consensus size: 164
72846266 GCAGATTTGA
* *
72846276 CATCTCTGTATTGTCAGAGAGTAGATTAAAGATAGCAGATTTGGCATCTCTGTATTATCAAAGAG
1 CATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTATCAAAGAG
* *
72846341 CAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATC-GAAGATAGCAGATT
66 CAGATCGAAGATAGAAGATTTGACATCTCTGTATTGTCAGAGAGCAGATCAG-AGATAGCAGATT
*
72846405 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAGGG
130 TAGCATCTCTGTATTGTCAGAGAGCAGATCGAGGG
* * * *
72846440 CATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAG
1 CATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTATCAAAGAG
*
72846505 CAGATCGAAGATAGAAGATTTGACGTCTCTGTATTGTCAGAGAGCAGATCAGAGATAGCAGATTT
66 CAGATCGAAGATAGAAGATTTGACATCTCTGTATTGTCAGAGAGCAGATCAGAGATAGCAGATTT
*
72846570 AGCGTCTCTGT
131 AGCATCTCTGT
72846581 GTTGATAGGA
Statistics
Matches: 129, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
164 128 0.99
165 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (164 bp):
CATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTATCAAAGAG
CAGATCGAAGATAGAAGATTTGACATCTCTGTATTGTCAGAGAGCAGATCAGAGATAGCAGATTT
AGCATCTCTGTATTGTCAGAGAGCAGATCGAGGG
Found at i:72846605 original size:208 final size:208
Alignment explanation
Indices: 72846234--72846614 Score: 563
Period size: 208 Copynumber: 1.8 Consensus size: 208
72846224 AGATGTGGCG
* *
72846234 TCTCTGTATTGTCAGAGAGTAGATCGAAGATAGCAGATTTGACATCTCTGTATTGTCAGAGAGTA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACATCTCTGTATTGTCAGAGAGCA
* * * *
72846299 GATTAAAGATAGCAGATTTGGCATCTCTGTATTATCAAAGAGCAGATCGAAGATAGCAGATTTGG
66 GATCAAAGATAGAAGATTTGACATCTCTGTATTATCAAAGAGCAGATCGAAGATAGCAGATTTAG
72846364 CATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAG
131 CATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAG
72846429 CAGATCGAGGGCA
196 CAGATCGAGGGCA
* *
72846442 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACATCTCTGTATTGTCAGAGAGCA
* * * *
72846507 GATCGAAGATAGAAGATTTGACGTCTCTGTATTGTCAGAGAGCAGATC-AGAGATAGCAGATTTA
66 GATCAAAGATAGAAGATTTGACATCTCTGTATTATCAAAGAGCAGATCGA-AGATAGCAGATTTA
* * *
72846571 GCGTCTCTGTGTTGAT-AG-GAAGTAGAGT-GAAGATAGCAGATTTG
130 GCATCTCTGTATTG-TCAGAG-AGCAGA-TCGAAGATAGCAGATTTG
72846615 ACATTCTTGA
Statistics
Matches: 154, Mismatches: 15, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
207 2 0.01
208 150 0.97
209 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.28
Consensus pattern (208 bp):
TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACATCTCTGTATTGTCAGAGAGCA
GATCAAAGATAGAAGATTTGACATCTCTGTATTATCAAAGAGCAGATCGAAGATAGCAGATTTAG
CATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAG
CAGATCGAGGGCA
Found at i:72848246 original size:12 final size:12
Alignment explanation
Indices: 72848231--72848267 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
72848221 ATTATTTTTA
72848231 TTATTATACATT
1 TTATTATACATT
*
72848243 TTATTTATAAATT
1 TTA-TTATACATT
72848256 TTATTATACATT
1 TTATTATACATT
72848268 ATATATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATACATT
Found at i:72848489 original size:10 final size:10
Alignment explanation
Indices: 72848421--72848493 Score: 62
Period size: 10 Copynumber: 7.2 Consensus size: 10
72848411 TATATGATAG
72848421 TTATCATATTA
1 TTAT-ATATTA
72848432 TTATAT-TTCA
1 TTATATATT-A
*
72848442 TTATATTTTA
1 TTATATATTA
72848452 TTTATATATT-
1 -TTATATATTA
*
72848462 TTAT-TACATA
1 TTATATA-TTA
*
72848472 TCATATATTA
1 TTATATATTA
72848482 TTATATATTA
1 TTATATATTA
72848492 TT
1 TT
72848494 CCCTATATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
8 2 0.04
9 7 0.14
10 26 0.51
11 16 0.31
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.60
Consensus pattern (10 bp):
TTATATATTA
Found at i:72855256 original size:22 final size:22
Alignment explanation
Indices: 72855231--72855276 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
72855221 AAACCTTTTC
*
72855231 TTTTCTTCGATCTAACCTCAAA
1 TTTTCTTCAATCTAACCTCAAA
72855253 TTTTCTTCAATCTAACCTCAAA
1 TTTTCTTCAATCTAACCTCAAA
72855275 TT
1 TT
72855277 AGTGTTGTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.02, T:0.43
Consensus pattern (22 bp):
TTTTCTTCAATCTAACCTCAAA
Found at i:72860571 original size:74 final size:74
Alignment explanation
Indices: 72860376--72860608 Score: 299
Period size: 77 Copynumber: 3.1 Consensus size: 74
72860366 AAAGTTAATC
* * * * *
72860376 TAAAGTTTATTTATTTAAATTG-AAAAAAACCATAAAATTGATAACTAAAAT-AGCGAAAAAGTT
1 TAAAGTTTA-CTATTTAAATTGCAAAAAAA-AATAAAATTGATAAATAAAATGA-CAAAAAAGTC
72860439 ATTACATAAATA
63 ATTACATAAATA
* *
72860451 CAAAGTTTACTATTTAAATTGCAAAAAAAAATCATAAAATTGATAAATAAAATGAAAAAAAAGTC
1 TAAAGTTTACTATTTAAATTGC-AAAAAAAA--ATAAAATTGATAAATAAAATGACAAAAAAGTC
72860516 ATTACATAAATA
63 ATTACATAAATA
** *
72860528 TAAAGTTTACTATTTAAATTGCAAAAAAAAATAAAATTGATAAATAAAATGACAAAAACTTCATC
1 TAAAGTTTACTATTTAAATTGCAAAAAAAAATAAAATTGATAAATAAAATGACAAAAAAGTCATT
72860593 ACATAAATA
66 ACATAAATA
*
72860602 TGAAGTT
1 TAAAGTT
72860609 ATTTATACCC
Statistics
Matches: 140, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
74 57 0.41
75 8 0.06
76 15 0.11
77 59 0.42
78 1 0.01
ACGTcount: A:0.55, C:0.08, G:0.07, T:0.30
Consensus pattern (74 bp):
TAAAGTTTACTATTTAAATTGCAAAAAAAAATAAAATTGATAAATAAAATGACAAAAAAGTCATT
ACATAAATA
Found at i:72863022 original size:100 final size:102
Alignment explanation
Indices: 72862906--72863142 Score: 321
Period size: 105 Copynumber: 2.4 Consensus size: 102
72862896 TAAATTACAT
72862906 TAAAAAATCAC-AAA-AC-ACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAACAA
1 TAAAAAATCACAAAACACAACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAACAA
72862968 AATAACTATAAATTTTTTTTTTTTTAAAAATACATTAC
66 AATAACTAT-AATTTTTTTTTTTTTAAAAATACATTAC
* * *
72863006 TAAAATATCACAAAACACATAACTAAACATTAACAATTTATATAACCTAATCATAAATTACTAAC
1 TAAAAAATCACAAAACAC--AACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAAC
*
72863071 AAAATAACTATAA-----TTTTTTTT-AAATTACATTAC
64 AAAATAACTATAATTTTTTTTTTTTTAAAAATACATTAC
*
72863104 TAAAAAATCACAAAACCCTATACTAAACACTAACAATTT
1 TAAAAAATCACAAAACAC-A-ACTAAACACTAACAATTT
72863143 GTAACATAAT
Statistics
Matches: 124, Mismatches: 7, Indels: 14
0.86 0.05 0.10
Matches are distributed among these distances:
97 2 0.02
98 44 0.35
99 8 0.06
100 10 0.08
101 3 0.02
102 2 0.02
104 2 0.02
105 53 0.43
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (102 bp):
TAAAAAATCACAAAACACAACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAACAA
AATAACTATAATTTTTTTTTTTTTAAAAATACATTAC
Found at i:72863158 original size:98 final size:101
Alignment explanation
Indices: 72862922--72863175 Score: 331
Period size: 98 Copynumber: 2.5 Consensus size: 101
72862912 ATCACAAAAC
*
72862922 ACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAACAAAATAACTATAAATTTTTTT
1 ACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAAA----TTT
*
72862987 TTTTTTAAAAATACATTACTAAAATATCACAAAACACATA
62 TTTTTTAAAAATACATTACTAAAAAATCACAAAACACATA
*
72863027 ACTAAACATTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTAT-AA-TTTTTT
1 ACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAAATTTTTTT
* *
72863090 TT-AAATTACATTACTAAAAAATCACAAAAC-CCTA
66 TTAAAAATACATTACTAAAAAATCACAAAACACATA
* * *
72863124 TACTAAACACTAACAA-TT-TGTAACATAATCTCATAAATTATTAACAAAATAA
1 -ACTAAACACTAACAATTTATATAACCTAA--TCATAAATTACTAACAAAATAA
72863176 ATAACTATAA
Statistics
Matches: 137, Mismatches: 9, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
96 8 0.06
97 5 0.04
98 61 0.45
99 8 0.06
104 2 0.01
105 53 0.39
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (101 bp):
ACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAAATTTTTTT
TTAAAAATACATTACTAAAAAATCACAAAACACATA
Found at i:72863477 original size:58 final size:59
Alignment explanation
Indices: 72863374--72863486 Score: 158
Period size: 58 Copynumber: 1.9 Consensus size: 59
72863364 ACTAAATACA
* * *
72863374 ACAACAATTTATAACATAAACCTAAATTACTAATAAATTAGTTTTAGAATAATTACAAAC
1 ACAACAATTCATAACATAAACCT-AATTACTAACAAATTAGTTTTAAAATAATTACAAAC
*
72863434 ACAACAATTCATAACATAATCCT-ATTACTAACAAATT-GATTTTAAAATAATTA
1 ACAACAATTCATAACATAAACCTAATTACTAACAAATTAG-TTTTAAAATAATTA
72863487 TAAAAAAATA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
57 1 0.02
58 26 0.54
60 21 0.44
ACGTcount: A:0.50, C:0.14, G:0.03, T:0.33
Consensus pattern (59 bp):
ACAACAATTCATAACATAAACCTAATTACTAACAAATTAGTTTTAAAATAATTACAAAC
Found at i:72863718 original size:25 final size:25
Alignment explanation
Indices: 72863653--72863725 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 25
72863643 ATACTTTTTG
*
72863653 TTTCTT-TCTTTCTTTCTTTCTTCTTC
1 TTTCTTCT-TTTCTTT-TTTCTTCTCC
*
72863679 -TTCTTCTTTT-TTTTTTTTTCTCC
1 TTTCTTCTTTTCTTTTTTCTTCTCC
72863702 TTTCTCTCTTTTCTTTTTCTCTTC
1 TTTCT-TCTTTTCTTTTT-TCTTC
72863726 CGGTAGTTGC
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
23 8 0.21
24 7 0.18
25 14 0.36
26 6 0.15
27 4 0.10
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (25 bp):
TTTCTTCTTTTCTTTTTTCTTCTCC
Found at i:72864030 original size:18 final size:18
Alignment explanation
Indices: 72864007--72864044 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
72863997 TCTTTAAAGT
72864007 AAAAAATATTTTAAGCGC
1 AAAAAATATTTTAAGCGC
*
72864025 AAAAAATATTTTAAGTGC
1 AAAAAATATTTTAAGCGC
72864043 AA
1 AA
72864045 CCCAAAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.29
Consensus pattern (18 bp):
AAAAAATATTTTAAGCGC
Found at i:72872761 original size:14 final size:14
Alignment explanation
Indices: 72872742--72872768 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
72872732 TTGCGTAACC
72872742 TAAATTTTAGAAAT
1 TAAATTTTAGAAAT
72872756 TAAATTTTAGAAA
1 TAAATTTTAGAAA
72872769 ACCCGTCTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (14 bp):
TAAATTTTAGAAAT
Found at i:72901112 original size:9 final size:9
Alignment explanation
Indices: 72901098--72901123 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
72901088 TTAAGAGTCT
72901098 CAACCATAA
1 CAACCATAA
72901107 CAACCATAA
1 CAACCATAA
72901116 CAACCATA
1 CAACCATA
72901124 GCCTAAGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.54, C:0.35, G:0.00, T:0.12
Consensus pattern (9 bp):
CAACCATAA
Found at i:72912198 original size:18 final size:18
Alignment explanation
Indices: 72912165--72912199 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72912155 AAACATCAAT
*
72912165 TAATAAAAATGGAAAATG
1 TAATAAAAATAGAAAATG
*
72912183 TAATAAAAATATAAAAT
1 TAATAAAAATAGAAAAT
72912200 AACTAGAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (18 bp):
TAATAAAAATAGAAAATG
Found at i:72913921 original size:5 final size:5
Alignment explanation
Indices: 72913911--72913941 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
72913901 ATACAATCCC
72913911 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T
72913942 TTTAAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:72915546 original size:14 final size:15
Alignment explanation
Indices: 72915517--72915566 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
72915507 CAAAATAAAC
*
72915517 ATTTTCATTAAATTA
1 ATTTTAATTAAATTA
72915532 ATTTTAATT-AATTA
1 ATTTTAATTAAATTA
72915546 ATTTTCTAATTAAATT-
1 A-TTT-TAATTAAATTA
72915562 ATTTT
1 ATTTT
72915567 TTCAACCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
14 7 0.23
15 14 0.45
16 6 0.19
17 4 0.13
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTTAATTAAATTA
Found at i:72929151 original size:21 final size:20
Alignment explanation
Indices: 72929125--72929164 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
72929115 ACTTTTTTAA
72929125 CTATCAACAACCATTCAAAAT
1 CTATCAACAACCA-TCAAAAT
* *
72929146 CTATCATCAATCATCAAAA
1 CTATCAACAACCATCAAAA
72929165 CCCATACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (20 bp):
CTATCAACAACCATCAAAAT
Found at i:72941593 original size:38 final size:38
Alignment explanation
Indices: 72941545--72941623 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
72941535 CCAACTTGCA
72941545 CACTTAGTGTCATTTGTAGCCAAAACTATTTTGAACCG
1 CACTTAGTGTCATTTGTAGCCAAAACTATTTTGAACCG
72941583 CACTTAGTGTCATTTGTAGCCAAAACTATTTTGAACCG
1 CACTTAGTGTCATTTGTAGCCAAAACTATTTTGAACCG
72941621 CAC
1 CAC
72941624 ACTTAGTGCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (38 bp):
CACTTAGTGTCATTTGTAGCCAAAACTATTTTGAACCG
Found at i:72952039 original size:15 final size:17
Alignment explanation
Indices: 72952019--72952050 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
72952009 TTAACATATT
72952019 TACCAAA-TCA-ATTCA
1 TACCAAACTCATATTCA
72952034 TACCAAACTCATATTCA
1 TACCAAACTCATATTCA
72952051 CAAGTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (17 bp):
TACCAAACTCATATTCA
Found at i:72953464 original size:22 final size:23
Alignment explanation
Indices: 72953439--72953481 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
72953429 ATGCCATATC
*
72953439 ATAAACA-ACCAAATTCATGCTT
1 ATAAACATACCAAAATCATGCTT
*
72953461 ATAACCATACCAAAATCATGC
1 ATAAACATACCAAAATCATGC
72953482 CAAATCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.47, C:0.26, G:0.05, T:0.23
Consensus pattern (23 bp):
ATAAACATACCAAAATCATGCTT
Found at i:72954308 original size:43 final size:43
Alignment explanation
Indices: 72954242--72954398 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 43
72954232 AGCTTGTACA
72954242 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
* *
72954285 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCACTGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
* * *
72954327 ATGTCGA-TGTCCCAGACATGGTCTTACATGTAAATCATAA-GTCG
1 ATG-CCACTGTCCCAGACGTGGTCTTACATGT-AATCA-AATATCG
* *
72954371 ATGACAATGTCCCAGACGTGGTCTTACA
1 ATGCCACTGTCCCAGACGTGGTCTTACA
72954399 CGAAAACACA
Statistics
Matches: 96, Mismatches: 10, Indels: 15
0.79 0.08 0.12
Matches are distributed among these distances:
42 26 0.27
43 43 0.45
44 27 0.28
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:72954431 original size:86 final size:84
Alignment explanation
Indices: 72954242--72954411 Score: 200
Period size: 86 Copynumber: 2.0 Consensus size: 84
72954232 AGCTTGTACA
* * * *
72954242 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCGACGT-CCAGACATGGTCTTACATGTAATCAAATATCGATGACAATGTCCCAGACAGGGT
*
72954307 CTTACACGAAATCAAATATG
65 CTTACACGAAAACAAATATG
* * *
72954327 ATGTCGATGTCCCAGACATGGTCTTACATGTAAATCATAA-GTCGATGACAATGTCCCAGAC-GT
1 ATGCCGACGT-CCAGACATGGTCTTACATGT-AATCA-AATATCGATGACAATGTCCCAGACAG-
*
72954390 GGTCTTACACGAAAACACATAT
62 GGTCTTACACGAAAACAAATAT
72954412 CGGATCCTAC
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 28 0.38
86 43 0.59
87 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (84 bp):
ATGCCGACGTCCAGACATGGTCTTACATGTAATCAAATATCGATGACAATGTCCCAGACAGGGTC
TTACACGAAAACAAATATG
Found at i:72966187 original size:39 final size:40
Alignment explanation
Indices: 72965969--72966161 Score: 289
Period size: 40 Copynumber: 4.8 Consensus size: 40
72965959 TCAGATAATA
* *
72965969 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATG
** *
72966009 TTCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
*
72966049 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
* *
72966089 ACCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACTATG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
*
72966129 ACCGGGCTAAGTCCCGAAGGCATTTGGGCGAGT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
72966162 AGCTATATCC
Statistics
Matches: 139, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
Found at i:72979453 original size:26 final size:26
Alignment explanation
Indices: 72979409--72979459 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
72979399 TTTATAGGTG
* *
72979409 GAAAATTTACAGATTTACCCCTAGGA
1 GAAAAATTACAGATATACCCCTAGGA
*
72979435 GAAAAATTACTGATATACCCCTAGG
1 GAAAAATTACAGATATACCCCTAGG
72979460 GTTAAGGTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (26 bp):
GAAAAATTACAGATATACCCCTAGGA
Found at i:72983300 original size:41 final size:41
Alignment explanation
Indices: 72983269--72983408 Score: 172
Period size: 41 Copynumber: 3.4 Consensus size: 41
72983259 ATGGGGACAT
* *
72983269 GTATGTGCAATTCAAGGGTACCAAAGTACAAACAAGGGCAC
1 GTATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGCAC
* * * * *
72983310 GTATGAGGAGTTCAGGGGTATCGAAGTACAAACAGGGGCAC
1 GTATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGCAC
** * *
72983351 GTATGTGCAATTCAGGGGTACTGAATTACAAACATGGGCAC
1 GTATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGCAC
*
72983392 GTATGTGTAATTCAGGG
1 GTATGTGCAATTCAGGG
72983409 TATAATTAAG
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 84 1.00
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (41 bp):
GTATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGCAC
Found at i:72983367 original size:21 final size:21
Alignment explanation
Indices: 72983342--72983408 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
72983332 GAAGTACAAA
72983342 CAGGGGCACGTATGTGCAATT
1 CAGGGGCACGTATGTGCAATT
* * * *
72983363 CAGGGGTACTGAAT-TACAA-A
1 CAGGGGCAC-GTATGTGCAATT
* *
72983383 CATGGGCACGTATGTGTAATT
1 CAGGGGCACGTATGTGCAATT
72983404 CAGGG
1 CAGGG
72983409 TATAATTAAG
Statistics
Matches: 32, Mismatches: 11, Indels: 6
0.65 0.22 0.12
Matches are distributed among these distances:
19 3 0.09
20 10 0.31
21 16 0.50
22 3 0.09
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.24
Consensus pattern (21 bp):
CAGGGGCACGTATGTGCAATT
Found at i:72990482 original size:13 final size:13
Alignment explanation
Indices: 72990464--72990496 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
72990454 TCAAAGTTGG
72990464 GTCACACAATCGT
1 GTCACACAATCGT
*
72990477 GTCACACAGTCGT
1 GTCACACAATCGT
72990490 GTCACAC
1 GTCACAC
72990497 GCTGTGTCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.21
Consensus pattern (13 bp):
GTCACACAATCGT
Found at i:72992586 original size:27 final size:28
Alignment explanation
Indices: 72992533--72992588 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
72992523 TATGTTTTAA
72992533 CACTTTTAAATTTTTAATTAACAAAAAT
1 CACTTTTAAATTTTTAATTAACAAAAAT
*
72992561 CACTTTTAATTTTTTAATTAACAAAAAT
1 CACTTTTAAATTTTTAATTAACAAAAAT
72992589 AACACATACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (28 bp):
CACTTTTAAATTTTTAATTAACAAAAAT
Found at i:72993629 original size:58 final size:58
Alignment explanation
Indices: 72993565--72993675 Score: 213
Period size: 58 Copynumber: 1.9 Consensus size: 58
72993555 ATCCCCTTAG
*
72993565 TCAAATGTCTTCTTGTATGGGACATGCATCCCCTTAATTGATACCTTTAATGTTTTAT
1 TCAAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGTTTTAT
72993623 TCAAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGT
1 TCAAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGT
72993676 GTCTTAGGAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (58 bp):
TCAAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGTTTTAT
Found at i:73002098 original size:26 final size:26
Alignment explanation
Indices: 73002069--73002150 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
73002059 TGATACAAAT
73002069 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
73002095 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73002121 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73002147 TGAT
1 TGAT
73002151 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:73005368 original size:12 final size:12
Alignment explanation
Indices: 73005351--73005381 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
73005341 ACTCGGGGAA
73005351 GAGGCCGTGGTC
1 GAGGCCGTGGTC
73005363 GAGGCCGTGGTC
1 GAGGCCGTGGTC
*
73005375 AAGGCCG
1 GAGGCCG
73005382 AGGTAGTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.26, G:0.48, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:73010240 original size:26 final size:26
Alignment explanation
Indices: 73010211--73010318 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
73010201 TGATACAAAT
73010211 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
73010237 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73010263 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73010289 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73010315 TGAT
1 TGAT
73010319 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:73018078 original size:16 final size:18
Alignment explanation
Indices: 73018051--73018083 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
73018041 TAGAATTGTG
73018051 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
73018068 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
73018084 GTTAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:73022840 original size:43 final size:43
Alignment explanation
Indices: 73022792--73022874 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
73022782 TGAGAGTATT
*
73022792 AAAATTATGGTGAATTAATTTTAGCGATTTCATGCTTAATATG
1 AAAATTATGGTAAATTAATTTTAGCGATTTCATGCTTAATATG
*
73022835 AAAATTTTGGTAAATTAATTTTAGCGATTTCATGCTTAAT
1 AAAATTATGGTAAATTAATTTTAGCGATTTCATGCTTAAT
73022875 TGTGAAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.35, C:0.07, G:0.14, T:0.43
Consensus pattern (43 bp):
AAAATTATGGTAAATTAATTTTAGCGATTTCATGCTTAATATG
Found at i:73022892 original size:43 final size:42
Alignment explanation
Indices: 73022804--73022892 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 42
73022794 AATTATGGTG
* *
73022804 AATTAATTTTAGCGATTTCATGCTTAATATGAAAATTTTGGTA
1 AATTAATTTTAGCGATTTCATGCTTAATATGAAAA-TATGCTA
*
73022847 AATTAATTTTAGCGATTTCATGCTTAATTGTGAAAA-ATGACTA
1 AATTAATTTTAGCGATTTCATGCTTAA-TATGAAAATATG-CTA
73022890 AAT
1 AAT
73022893 CGCATAAAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
42 2 0.05
43 32 0.78
44 7 0.17
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.42
Consensus pattern (42 bp):
AATTAATTTTAGCGATTTCATGCTTAATATGAAAATATGCTA
Found at i:73024075 original size:46 final size:46
Alignment explanation
Indices: 73023926--73024137 Score: 218
Period size: 46 Copynumber: 4.6 Consensus size: 46
73023916 TTATTTGTGT
* ** *
73023926 GCCAGTGTAAGACATGCCTGGGACATGCATCGGCCATATA-ATGAGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAGATGAGA
* * *
73023972 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGA
*
73024020 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGA
* * * *
73024066 GCCAATGTAAAACATGTCTAGGACATGCATCGG-CTACGAGA-G-GT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGA
*
73024110 GTCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
73024138 GCATTGACAC
Statistics
Matches: 140, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
44 9 0.06
45 17 0.12
46 61 0.44
47 30 0.21
48 23 0.16
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:73034581 original size:46 final size:48
Alignment explanation
Indices: 73034434--73034797 Score: 229
Period size: 46 Copynumber: 7.7 Consensus size: 48
73034424 TTATTTGTGT
* * *
73034434 GCCAGTGTAAGA-CATGCCTGGGACATGCATCTGCCAC-ATTATG-AGA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-TATGTAGA
* ** * * *
73034480 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGAGACG-AGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGATATGTAGA
* * *
73034528 GCTAGTGTAAGA-AATGCCTGGGACATGCATCGGCCTCGATATGTA-A
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGATATGTAGA
* * *
73034574 GCCAGTGTAAGA-CATGTCTGGGACAGGCATCGG-CTATGATA-G--GT
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGATATGTAGA
* * *
73034618 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGTCAC-GGATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTCGATATGT-AGA
* * * * *
73034668 GCTAGTGTAAGACTATGTCTGGGACATGCCATCGGCCTTGAT-TTTGATA
1 GCCAGTGTAAGACCATGTCTGGGACATG-CATCGGCCTCGATATGT-AGA
** * * * ** * *
73034717 GTTAGTCTAAGACCATGTCTAGGACACGGCATC-AACTTGAT-GGATA-A
1 GCCAGTGTAAGACCATGTCTGGGACA-TGCATCGGCCTCGATATG-TAGA
73034764 GCCAGTGTAAGACCATGTCTGGGACATAGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCG
73034798 ACATTATACC
Statistics
Matches: 248, Mismatches: 50, Indels: 38
0.74 0.15 0.11
Matches are distributed among these distances:
44 11 0.04
45 16 0.06
46 68 0.27
47 53 0.21
48 30 0.12
49 35 0.14
50 35 0.14
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGATATGTAGA
Found at i:73034677 original size:94 final size:94
Alignment explanation
Indices: 73034436--73034703 Score: 302
Period size: 94 Copynumber: 2.9 Consensus size: 94
73034426 ATTTGTGTGC
*
73034436 CAGTGTAAGACATGCCTGGGACATGCATCTGCCAC-AT-TATGAGAGCCAGTGTAAGACCATGTC
1 CAGTGTAAGACATGCCTGGGACATGCATC-GCCACGATATGTGAGAGCCAGTGTAAGA-CATGTC
*
73034499 TAGGACATGGCATCGG-TATTGAGACGAGAG
64 TGGGACATGGCATCGGCTATTGAGACGAGAG
* *
73034529 CTAGTGTAAGAAATGCCTGGGACATGCATCGGCCTCGATATGT-A-AGCCAGTGTAAGACATGTC
1 C-AGTGTAAGACATGCCTGGGACATGCATC-GCCACGATATGTGAGAGCCAGTGTAAGACATGTC
* *
73034592 TGGGACA-GGCATCGGCTA-TGATA-G-GTG
64 TGGGACATGGCATCGGCTATTGAGACGAGAG
* * *
73034619 TCAGTGTAAGACCATGTCTGGGACATGGCATCGTCACGGATATGTGAGAGCTAGTGTAAGACTAT
1 -CAGTGTAAGA-CATGCCTGGGACAT-GCATCGCCAC-GATATGTGAGAGCCAGTGTAAGAC-AT
*
73034684 GTCTGGGACATGCCATCGGC
61 GTCTGGGACATGGCATCGGC
73034704 CTTGATTTTG
Statistics
Matches: 150, Mismatches: 13, Indels: 21
0.82 0.07 0.11
Matches are distributed among these distances:
90 11 0.07
91 17 0.11
92 24 0.16
93 16 0.11
94 57 0.38
95 15 0.10
96 10 0.07
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (94 bp):
CAGTGTAAGACATGCCTGGGACATGCATCGCCACGATATGTGAGAGCCAGTGTAAGACATGTCTG
GGACATGGCATCGGCTATTGAGACGAGAG
Found at i:73034736 original size:99 final size:92
Alignment explanation
Indices: 73034565--73034789 Score: 224
Period size: 96 Copynumber: 2.4 Consensus size: 92
73034555 CATCGGCCTC
* * *
73034565 GATATGTAAGCCAGTGTAAGACATGTCTGGGACAGGCATCGGCTATGATAGGTGTCAGTGTAAGA
1 GATATGTAAGCCAGTGTAAGACATGTCTGGGACAGCCATCGGCTATGATAGATGTCAGTCTAAGA
* *
73034630 CCATGTCTGGGACATGGCATCGTCACG
66 CCATGTCTAGGACACGGCATCGTCACG
* * *
73034657 GATATGTGAGAGCTAGTGTAAGACTATGTCTGGGACATGCCATCGGCCT-TGATTTTGATAGTTA
1 GATATGT-A-AGCCAGTGTAAGAC-ATGTCTGGGACA-GCCATCGG-CTATGA--TAGAT-GTCA
* *
73034721 GTCTAAGACCATGTCTAGGACACGGCATC--AACTT
58 GTCTAAGACCATGTCTAGGACACGGCATCGTCAC-G
*
73034755 GAT-GGATAAGCCAGTGTAAGACCATGTCTGGGACA
1 GATATG-TAAGCCAGTGTAAGA-CATGTCTGGGACA
73034790 TAGCATCGAC
Statistics
Matches: 110, Mismatches: 12, Indels: 18
0.79 0.09 0.13
Matches are distributed among these distances:
92 7 0.06
93 1 0.01
94 13 0.12
95 12 0.11
96 34 0.31
97 7 0.06
98 7 0.06
99 29 0.26
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (92 bp):
GATATGTAAGCCAGTGTAAGACATGTCTGGGACAGCCATCGGCTATGATAGATGTCAGTCTAAGA
CCATGTCTAGGACACGGCATCGTCACG
Done.