Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 221 of 343
Found at i:73035826 original size:51 final size:51
Alignment explanation
Indices: 73035745--73035852 Score: 153
Period size: 51 Copynumber: 2.1 Consensus size: 51
73035735 AGAATTTAAT
* *
73035745 TCACACGGGCATGGGACACGGGCATGTCCCTAGATGCTTAGGGCGTATGTG
1 TCACACAGGCATGGGACACGGGCATCTCCCTAGATGCTTAGGGCGTATGTG
* * * * *
73035796 TCACACAGGTATGGGACACGGGCGTCTCCCTAGATGCTTAGGTCGTGTTTG
1 TCACACAGGCATGGGACACGGGCATCTCCCTAGATGCTTAGGGCGTATGTG
73035847 TCACAC
1 TCACAC
73035853 GGGCCATCAG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (51 bp):
TCACACAGGCATGGGACACGGGCATCTCCCTAGATGCTTAGGGCGTATGTG
Found at i:73037810 original size:47 final size:48
Alignment explanation
Indices: 73037629--73037848 Score: 177
Period size: 47 Copynumber: 4.7 Consensus size: 48
73037619 ATTACAAGAA
* * *
73037629 CCAGTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGAGACGA-GTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATCGAGA-TATGAG
* * * * * * *
73037677 CTAGTGTAAGA-CATGTCCGGGATAT-GCATCGGCATCGGGACATAAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATATGAG
* * * *
73037723 CCAGTGTAAGA-CATGTCTAGGACAT-GCGTCGGC-TACGAGATGTGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACAT-CGAGATATGAG
* * * *
73037769 TCAGTGTAAGACCATGTCTGGGATATGGCTTCGAC-TTGAGATATGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATATGAG
* *
73037816 CCAGTGTAAGACCGTGTCTAGGACATGGCATCG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCG
73037849 GCGCCTTAAC
Statistics
Matches: 137, Mismatches: 30, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
45 2 0.01
46 57 0.42
47 61 0.45
48 17 0.12
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (48 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATATGAG
Found at i:73040586 original size:46 final size:45
Alignment explanation
Indices: 73040536--73040708 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
73040526 TGGTTGAGCA
*
73040536 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * * *
73040582 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G
* *
73040627 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* *
73040675 -CCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73040709 TGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 58 0.55
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATG
Found at i:73040692 original size:93 final size:93
Alignment explanation
Indices: 73040533--73040703 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
73040523 GGATGGTTGA
*
73040533 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGTCCGAACTCGTTGAGT
73040598 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
73040626 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGTCC-GAACTCGTTGAG
*
73040690 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
73040704 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:73047690 original size:46 final size:46
Alignment explanation
Indices: 73047640--73047815 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
73047630 TGGTTGAGCA
*
73047640 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
73047686 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
73047731 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
73047779 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73047816 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73047796 original size:93 final size:93
Alignment explanation
Indices: 73047637--73047807 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
73047627 GGATGGTTGA
* *
73047637 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73047702 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
73047730 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73047795 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73047808 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:73054958 original size:46 final size:46
Alignment explanation
Indices: 73054835--73054950 Score: 164
Period size: 47 Copynumber: 2.5 Consensus size: 46
73054825 TGTGTGAGCT
*
73054835 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGAGAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAACC
*
73054881 AGTGTAAGAACATGTCTGGGACATGCATCGGCCAC-TGGACGTA-AGCC
1 AGTGTAAG-ACATGTCTGGGACATGCATCGGCCACAT-GACG-AGAACC
*
73054928 AGTGTAAGACATGTCTGAGACAT
1 AGTGTAAGACATGTCTGGGACAT
73054951 CCGTCGGCTA
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
46 23 0.36
47 40 0.62
48 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAACC
Found at i:73055012 original size:47 final size:46
Alignment explanation
Indices: 73054927--73055026 Score: 105
Period size: 47 Copynumber: 2.2 Consensus size: 46
73054917 GGACGTAAGC
*
73054927 CAGTGTAAGACATGTCTGAGACATCCGTCGGCTATGAGATGAT-AGT
1 CAGTGTAAGACATGTCTGAGACATCCGTCGACTATGAGAT-ATGAGT
* * * *
73054973 CAGTGTAAGACCATGTTTGGGACATGGCTTCGACT-TGAGATATGAGT
1 CAGTGTAAGA-CATGTCTGAGACAT-CCGTCGACTATGAGATATGAGT
*
73055020 TAGTGTA
1 CAGTGTA
73055027 CCATGTCTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
46 12 0.27
47 27 0.60
48 6 0.13
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (46 bp):
CAGTGTAAGACATGTCTGAGACATCCGTCGACTATGAGATATGAGT
Found at i:73056235 original size:21 final size:21
Alignment explanation
Indices: 73056195--73056233 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
73056185 GTCGAAATGG
*
73056195 TCACATGGGCGTGTTGCCCTT
1 TCACACGGGCGTGTTGCCCTT
73056216 TCACACGGGCGTG-TGCCC
1 TCACACGGGCGTGTTGCCC
73056234 CTATGTCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.33, G:0.31, T:0.26
Consensus pattern (21 bp):
TCACACGGGCGTGTTGCCCTT
Found at i:73065627 original size:22 final size:22
Alignment explanation
Indices: 73065602--73065647 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
73065592 AATTTTAAAT
73065602 ATTTTT-TAAACAATTAATATGA
1 ATTTTTATAAA-AATTAATATGA
* *
73065624 ATTTTTATCAAAATTAATTTGA
1 ATTTTTATAAAAATTAATATGA
73065646 AT
1 AT
73065648 ATATAAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.48
Consensus pattern (22 bp):
ATTTTTATAAAAATTAATATGA
Found at i:73067565 original size:29 final size:29
Alignment explanation
Indices: 73067528--73067616 Score: 84
Period size: 29 Copynumber: 3.3 Consensus size: 29
73067518 CTCTCTCTAT
73067528 ATAAATATTCTACATACATTCCATATATG
1 ATAAATATTCTACATACATTCCATATATG
* *
73067557 ATAATTATTCT--AT--ATT-C-TAAAT-
1 ATAAATATTCTACATACATTCCATATATG
* *
73067579 ATAAATATTCTACACACATTCTATATATG
1 ATAAATATTCTACATACATTCCATATATG
*
73067608 ATAATTATT
1 ATAAATATT
73067617 TTTTTATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 14
0.69 0.10 0.21
Matches are distributed among these distances:
22 10 0.22
23 4 0.09
24 2 0.04
25 3 0.07
26 3 0.07
27 2 0.04
28 4 0.09
29 18 0.39
ACGTcount: A:0.42, C:0.13, G:0.02, T:0.43
Consensus pattern (29 bp):
ATAAATATTCTACATACATTCCATATATG
Found at i:73070755 original size:25 final size:25
Alignment explanation
Indices: 73070706--73070828 Score: 101
Period size: 25 Copynumber: 5.0 Consensus size: 25
73070696 GTCATTAGGG
* *
73070706 TTACCGAT-TTCAGCTCTTATAAGC
1 TTACCGATATTCAGCTCGTATGAGC
*
73070730 TTACCGATACTCAGCTCGTATGAGC
1 TTACCGATATTCAGCTCGTATGAGC
* * * * *
73070755 TTA-CTATTATTCAGCTTGGAGGAAC
1 TTACCGA-TATTCAGCTCGTATGAGC
* * *
73070780 TTACCGTTATTCAGCTCGGAGGAGC
1 TTACCGATATTCAGCTCGTATGAGC
73070805 TTACCG-T-TTACAGCTCGTATGAGC
1 TTACCGATATT-CAGCTCGTATGAGC
73070829 ATAATTGTAC
Statistics
Matches: 80, Mismatches: 15, Indels: 8
0.78 0.15 0.08
Matches are distributed among these distances:
23 2 0.03
24 23 0.29
25 54 0.68
26 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (25 bp):
TTACCGATATTCAGCTCGTATGAGC
Found at i:73073589 original size:24 final size:24
Alignment explanation
Indices: 73073557--73073606 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
73073547 ACTCATTATA
73073557 GATAATGCATTGATATATATTGAT
1 GATAATGCATTGATATATATTGAT
*
73073581 GATAATGCATTGATGTATATTGAT
1 GATAATGCATTGATATATATTGAT
73073605 GA
1 GA
73073607 CATCCTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (24 bp):
GATAATGCATTGATATATATTGAT
Found at i:73073594 original size:14 final size:14
Alignment explanation
Indices: 73073557--73073595 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
73073547 ACTCATTATA
73073557 GATAATGCATTGAT
1 GATAATGCATTGAT
73073571 -AT-AT--ATTGAT
1 GATAATGCATTGAT
73073581 GATAATGCATTGAT
1 GATAATGCATTGAT
73073595 G
1 G
73073596 TATATTGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 8
0.72 0.00 0.28
Matches are distributed among these distances:
10 6 0.29
11 2 0.10
12 4 0.19
13 2 0.10
14 7 0.33
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (14 bp):
GATAATGCATTGAT
Found at i:73075180 original size:29 final size:30
Alignment explanation
Indices: 73075122--73075193 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 30
73075112 AAATTTTAAA
* *
73075122 AAAAATTTACATCTTAGACCCTAAACTTTCCT
1 AAAAA-TTACATTTTAGACCCCAAACTTT-CT
* *
73075154 -TAAATTACATTTTA-ACCCCAAATTTTCT
1 AAAAATTACATTTTAGACCCCAAACTTTCT
73075182 AAAAATTACATT
1 AAAAATTACATT
73075194 GAGCCCCAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
28 2 0.06
29 20 0.59
30 9 0.26
31 3 0.09
ACGTcount: A:0.40, C:0.21, G:0.01, T:0.38
Consensus pattern (30 bp):
AAAAATTACATTTTAGACCCCAAACTTTCT
Found at i:73075752 original size:19 final size:20
Alignment explanation
Indices: 73075728--73075769 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
73075718 TGTTTTCATA
*
73075728 TTTTCTTTCCTT-GGTTTTT
1 TTTTCTTTCCTTAGATTTTT
*
73075747 TTTTCTTTCTTTAGATTTTT
1 TTTTCTTTCCTTAGATTTTT
73075767 TTT
1 TTT
73075770 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.05, C:0.12, G:0.07, T:0.76
Consensus pattern (20 bp):
TTTTCTTTCCTTAGATTTTT
Found at i:73075812 original size:11 final size:11
Alignment explanation
Indices: 73075796--73075820 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
73075786 TAAATCTTTT
73075796 AAAAAAACAAA
1 AAAAAAACAAA
73075807 AAAAAAACAAA
1 AAAAAAACAAA
73075818 AAA
1 AAA
73075821 GGGCCTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:73088829 original size:77 final size:75
Alignment explanation
Indices: 73088651--73089429 Score: 918
Period size: 75 Copynumber: 10.1 Consensus size: 75
73088641 TTTATTTATG
* * * * *
73088651 TTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACACTAAGGTAATTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
73088716 AATTTCTGTT
66 AATTTCTGTT
*** * *
73088726 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACACGCCGAGATATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACGCTGAGGTATTT
*
73088789 TCAATTTCTATT
64 TCAATTTCTGTT
*
73088801 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
73088866 AATTTCTGTTCAATTTATAT
66 AATTTCTG---------T-T
** *
73088886 CTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 -TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
*
73088951 CAATTTCT-TCC
65 CAATTTCTGT-T
* ** *
73088962 TTTCAAAAAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
1 TTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTT
*
73089027 TCAATTTCTGTC
64 TCAATTTCTGTT
* * *
73089039 TTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
* *
73089104 AATTTTTGTC
66 AATTTCTGTT
* * *
73089114 TTTAAAAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
* *
73089179 AATTTTTGTC
66 AATTTCTGTT
** *
73089189 TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
*
73089254 AATTTCTGTC
66 AATTTCTGTT
** *
73089264 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGATTCACATGCTGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-A-AGACACGCTGAGGTATTT
* **
73089329 TTAATTTCTACT
64 TCAATTTCTGTT
* *
73089341 TTTCAAAAAAATCAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAA-ATCACGCCCTAAGG
1 TTTC--AAAAA--AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA-CACG--CTGAGG
73089405 TATTTTCAATTTCTGTT
59 TATTTTCAATTTCTGTT
73089422 TTTCAAAA
1 TTTCAAAA
73089430 GAAAATAAAA
Statistics
Matches: 625, Mismatches: 52, Indels: 50
0.86 0.07 0.07
Matches are distributed among these distances:
73 38 0.06
75 305 0.49
76 2 0.00
77 136 0.22
78 2 0.00
79 12 0.02
80 1 0.00
81 57 0.09
84 1 0.00
85 1 0.00
86 70 0.11
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (75 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
AATTTCTGTT
Found at i:73089835 original size:29 final size:31
Alignment explanation
Indices: 73089777--73089849 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 31
73089767 AATTTTCAAA
*
73089777 AAAAATTACATCTTAGACCCCTAAACTTTCCT
1 AAAAATTACATTTTAGACCCCTAAACTTT-CT
* *
73089809 -TAAATTACATTTTA-A-CCCTAAATTTTCT
1 AAAAATTACATTTTAGACCCCTAAACTTTCT
73089837 AAAAATTACATTT
1 AAAAATTACATTT
73089850 AGCCCCAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 2 0.06
29 21 0.58
30 1 0.03
31 12 0.33
ACGTcount: A:0.40, C:0.21, G:0.01, T:0.38
Consensus pattern (31 bp):
AAAAATTACATTTTAGACCCCTAAACTTTCT
Found at i:73090766 original size:12 final size:12
Alignment explanation
Indices: 73090749--73090776 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
73090739 TTTTGCGTTT
73090749 ATTCGCAACTCC
1 ATTCGCAACTCC
73090761 ATTCGCAACTCC
1 ATTCGCAACTCC
73090773 ATTC
1 ATTC
73090777 AATCGACCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.39, G:0.07, T:0.29
Consensus pattern (12 bp):
ATTCGCAACTCC
Found at i:73091223 original size:18 final size:19
Alignment explanation
Indices: 73091197--73091232 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
73091187 TTCTTTTCTC
*
73091197 ATTATTTATTTT-AAATTA
1 ATTAATTATTTTGAAATTA
73091215 ATTAATTATTTTGAAATT
1 ATTAATTATTTTGAAATT
73091233 TGTTTTACGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (19 bp):
ATTAATTATTTTGAAATTA
Found at i:73092255 original size:18 final size:18
Alignment explanation
Indices: 73092232--73092285 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
73092222 CCACCACCAA
73092232 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
73092250 CT-C-C-A-CCAC-C-TA
1 CTCCACTAGCCACACTTG
73092262 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
73092280 CTCCAC
1 CTCCAC
73092286 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 2 0.07
14 5 0.18
15 2 0.07
16 5 0.18
17 2 0.07
18 9 0.32
ACGTcount: A:0.22, C:0.50, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:73092258 original size:30 final size:30
Alignment explanation
Indices: 73092222--73092320 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
73092212 CTAGCCTTTG
73092222 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
73092252 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
73092282 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
73092312 CCACCACCA
1 CCACCACCA
73092321 CTTACACCTA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.25, C:0.51, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:73092838 original size:22 final size:24
Alignment explanation
Indices: 73092789--73092834 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
73092779 TTTTTTTTGT
73092789 TATTATTATATT-TTTTAATATTA
1 TATTATTATATTCTTTTAATATTA
73092812 TATTATATATATTCTTTTAATAT
1 TATTAT-TATATTCTTTTAATAT
73092835 ATTAGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATTATATTCTTTTAATATTA
Found at i:73092982 original size:25 final size:25
Alignment explanation
Indices: 73092872--73092991 Score: 93
Period size: 25 Copynumber: 4.8 Consensus size: 25
73092862 CGTATATAAT
* * * *
73092872 ACTATTTTATGTATATATCTTTAAT
1 ACTATATTATGTATATATTTTTTAC
* *
73092897 ACTATATTATTTATATTTTTTTCTAC
1 ACTATATTATGTATATATTTTT-TAC
* *
73092923 ATGTTATCTTATGTATATA--TTTTA-
1 A--CTATATTATGTATATATTTTTTAC
* *
73092947 ATTATATTATGTATGTATTTTTTAC
1 ACTATATTATGTATATATTTTTTAC
*
73092972 ACTATATTATGTACATATTT
1 ACTATATTATGTATATATTT
73092992 GTTTTTATAT
Statistics
Matches: 74, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
22 14 0.19
24 6 0.08
25 37 0.50
26 5 0.07
28 12 0.16
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.57
Consensus pattern (25 bp):
ACTATATTATGTATATATTTTTTAC
Found at i:73093085 original size:25 final size:24
Alignment explanation
Indices: 73093057--73093112 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
73093047 GTTATATTTT
*
73093057 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
73093082 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
73093105 CACTATTA
1 CACTATTA
73093113 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:73094060 original size:141 final size:141
Alignment explanation
Indices: 73093806--73094085 Score: 506
Period size: 141 Copynumber: 2.0 Consensus size: 141
73093796 GACCAAAGGC
*
73093806 CCTGTTTTAGTAAACGAAAATTGATTTATTAAAACAAAGGTGATCCGATCACACCTGATAAAAGA
1 CCTGTTTTAGTAAACGAAAATTGATTTATTAAAACAAAGGTGATCCGATCACACCTAATAAAAGA
*
73093871 TTGGTGGCGACTCCCATTTTAATTTTCACTTTCAAACAAAGTCGATCCCTGTTTTCAAAAGAATG
66 TTGGTGGCGACTCCCATTTTAATTTTCACTTTCAAACAAAGTCGATCCCCGTTTTCAAAAGAATG
73093936 GTTTCGACAGT
131 GTTTCGACAGT
* *
73093947 CCTGTTTTAGTAAACTAAAATTGATTTATTAAAACAAATGTGATCCGATCACACCTAATAAAAGA
1 CCTGTTTTAGTAAACGAAAATTGATTTATTAAAACAAAGGTGATCCGATCACACCTAATAAAAGA
* *
73094012 TTGGTGGCGACTCCCGTTTTAATTTTCACTTTCAAACAAAGTTGATCCCCGTTTTCAAAAGAATG
66 TTGGTGGCGACTCCCATTTTAATTTTCACTTTCAAACAAAGTCGATCCCCGTTTTCAAAAGAATG
73094077 GTTTCGACA
131 GTTTCGACA
73094086 AACTAATAGT
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 133 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.33
Consensus pattern (141 bp):
CCTGTTTTAGTAAACGAAAATTGATTTATTAAAACAAAGGTGATCCGATCACACCTAATAAAAGA
TTGGTGGCGACTCCCATTTTAATTTTCACTTTCAAACAAAGTCGATCCCCGTTTTCAAAAGAATG
GTTTCGACAGT
Found at i:73097503 original size:31 final size:31
Alignment explanation
Indices: 73097465--73097527 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
73097455 AATCAGAGTA
73097465 AAAATACTTTTACAACCCTTAAAATGAATTT
1 AAAATACTTTTACAACCCTTAAAATGAATTT
73097496 AAAATACTTTTACAACCCTTAAAATGAATTT
1 AAAATACTTTTACAACCCTTAAAATGAATTT
73097527 A
1 A
73097528 TGGGACCTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (31 bp):
AAAATACTTTTACAACCCTTAAAATGAATTT
Found at i:73100254 original size:72 final size:74
Alignment explanation
Indices: 73100170--73100317 Score: 273
Period size: 72 Copynumber: 2.0 Consensus size: 74
73100160 AATTGAACAT
73100170 GGAATCCATGAAATGGTGAGTTCATGATTAGTTATCATTATATTGCACTAAAATAGTTTT-GA-A
1 GGAATCCATGAAATGGTGAGTTCATGATTAGTTATCATTATATTGCACTAAAATAGTTTTGGACA
73100233 GCAGTAATA
66 GCAGTAATA
73100242 GGAATCCATGAAATGGTGAGTTCATGATTAGTTATCATTATATTGCACTAAAATAGTTTTGGGAC
1 GGAATCCATGAAATGGTGAGTTCATGATTAGTTATCATTATATTGCACTAAAATAGTTTT-GGAC
73100307 AGCAGTAATA
65 AGCAGTAATA
73100317 G
1 G
73100318 TTTGACTTTG
Statistics
Matches: 73, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
72 60 0.82
74 2 0.03
75 11 0.15
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (74 bp):
GGAATCCATGAAATGGTGAGTTCATGATTAGTTATCATTATATTGCACTAAAATAGTTTTGGACA
GCAGTAATA
Found at i:73101150 original size:27 final size:27
Alignment explanation
Indices: 73101119--73101172 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
73101109 AGGGACTTAG
*
73101119 TTATTTTTTGTATGAGTATTATGAATT
1 TTATTTGTTGTATGAGTATTATGAATT
73101146 TTATTTGTTGTATGAGTATTATGAATT
1 TTATTTGTTGTATGAGTATTATGAATT
73101173 GGTTAAATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.00, G:0.17, T:0.57
Consensus pattern (27 bp):
TTATTTGTTGTATGAGTATTATGAATT
Found at i:73105565 original size:6 final size:6
Alignment explanation
Indices: 73105554--73105583 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
73105544 ACACCGTAGG
*
73105554 GTAACA GTAACA GTAACA GTAATA GTAACA
1 GTAACA GTAACA GTAACA GTAACA GTAACA
73105584 TTTAGGTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (6 bp):
GTAACA
Found at i:73107406 original size:27 final size:27
Alignment explanation
Indices: 73107313--73107412 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
73107303 CATCCTGTCA
* * * *
73107313 ACCTTTGTGGTGTACTCTGAATGAATC
1 ACCTTTGTAGCGTACTCTGTATGGATC
* * * *
73107340 ACCTTTATAGTGTACTCTATATAGATGC
1 ACCTTTGTAGCGTACTCTGTATGGAT-C
* * *
73107368 -CATTTCTGGCGTACTCTGTATGGATC
1 ACCTTTGTAGCGTACTCTGTATGGATC
73107394 ACCTTTGTAGCGTACTCTG
1 ACCTTTGTAGCGTACTCTG
73107413 ATTAGATTGA
Statistics
Matches: 56, Mismatches: 15, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (27 bp):
ACCTTTGTAGCGTACTCTGTATGGATC
Found at i:73108203 original size:22 final size:23
Alignment explanation
Indices: 73108161--73108205 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
73108151 ATAAGGAATA
73108161 TTGAGTATAATAAGAGTATGATAG
1 TTGAGTATAATAAGAG-ATGATAG
73108185 TTGATGTATAAT-AGA-ATGATA
1 TTGA-GTATAATAAGAGATGATA
73108206 AACTATGGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (23 bp):
TTGAGTATAATAAGAGATGATAG
Found at i:73129000 original size:34 final size:34
Alignment explanation
Indices: 73128957--73129027 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
73128947 TAATTTTTTT
73128957 TTTTTAGTATTGAGAAAGTTGCTCGTGTTGTAAA
1 TTTTTAGTATTGAGAAAGTTGCTCGTGTTGTAAA
73128991 TTTTTAGTATTGAGAAAGTTGCTCGTGTTGTAAA
1 TTTTTAGTATTGAGAAAGTTGCTCGTGTTGTAAA
73129025 TTT
1 TTT
73129028 ACAAATTGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.25, C:0.06, G:0.23, T:0.46
Consensus pattern (34 bp):
TTTTTAGTATTGAGAAAGTTGCTCGTGTTGTAAA
Found at i:73131403 original size:16 final size:16
Alignment explanation
Indices: 73131382--73131418 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
73131372 TTGTAATATT
73131382 ATTATATGTTAAAAAG
1 ATTATATGTTAAAAAG
73131398 ATTATATGTTAAAAAG
1 ATTATATGTTAAAAAG
73131414 ATTAT
1 ATTAT
73131419 GTATTGTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.41
Consensus pattern (16 bp):
ATTATATGTTAAAAAG
Found at i:73136418 original size:5 final size:5
Alignment explanation
Indices: 73136408--73136446 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
73136398 TTGAAGTAGA
*
73136408 AGAAG AGAAG AAAAG AGAAG AGAAG AGAAG AGAAG AGAA
1 AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAA
73136447 AATAGTTGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (5 bp):
AGAAG
Found at i:73138932 original size:9 final size:9
Alignment explanation
Indices: 73138920--73138944 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
73138910 ATTTTTAAAT
73138920 CTTCTTCTA
1 CTTCTTCTA
73138929 CTTCTTCTA
1 CTTCTTCTA
73138938 CTTCTTC
1 CTTCTTC
73138945 CTCTATTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.36, G:0.00, T:0.56
Consensus pattern (9 bp):
CTTCTTCTA
Found at i:73139376 original size:29 final size:30
Alignment explanation
Indices: 73139337--73139405 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
73139327 ACGATAACGT
* **
73139337 AAGTGACTAAAACGTAACTT-TTCAAACAA
1 AAGTGACTAAAACATAACTTAGACAAACAA
*
73139366 AAGTGACTAAAATATAACTTGAGACAAACAA
1 AAGTGACTAAAACATAACTT-AGACAAACAA
73139397 AAGTGACTA
1 AAGTGACTA
73139406 TTTTGGTAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 18 0.53
31 16 0.47
ACGTcount: A:0.51, C:0.14, G:0.13, T:0.22
Consensus pattern (30 bp):
AAGTGACTAAAACATAACTTAGACAAACAA
Found at i:73144072 original size:33 final size:32
Alignment explanation
Indices: 73144009--73144072 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 32
73143999 ATTGTTAAAC
* *
73144009 ATAAATATTTAATTATTTATATTTAGTCATATA
1 ATAAATAATTAATTATTAATATTTA-TCATATA
73144042 ATAAATAATTAATATAATTAATATTT-TCATA
1 ATAAATAATTAAT-T-ATTAATATTTATCATA
73144073 AATTATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 17 0.63
34 1 0.04
35 9 0.33
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (32 bp):
ATAAATAATTAATTATTAATATTTATCATATA
Found at i:73144111 original size:13 final size:14
Alignment explanation
Indices: 73144095--73144136 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
73144085 TTTCAATTTT
73144095 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
73144108 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
73144123 ATTTTAAATAATAT
1 ATTTT-AATAATAT
73144137 TCTTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:73144121 original size:16 final size:16
Alignment explanation
Indices: 73144099--73144135 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
73144089 AATTTTATTT
73144099 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
73144116 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
73144131 TAATA
1 TAATA
73144136 TTCTTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:73144203 original size:34 final size:32
Alignment explanation
Indices: 73144157--73144223 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 32
73144147 TTATTGAAAA
* * *
73144157 TATTCAATATAAATATTTTAATAATAGATATT
1 TATTCAATATAAATATATAAATAATAAATATT
73144189 TATTACAATTATAAATATATAAATAATAAATATT
1 TATT-CAA-TATAAATATATAAATAATAAATATT
73144223 T
1 T
73144224 TATAGTATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 4 0.13
33 3 0.10
34 23 0.77
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (32 bp):
TATTCAATATAAATATATAAATAATAAATATT
Found at i:73144899 original size:5 final size:5
Alignment explanation
Indices: 73144883--73144918 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
73144873 CTGTGTATCC
73144883 TCCTT CTCCTT TCCTT TCCTT TCCTT TCCCTT TCCT
1 TCCTT -TCCTT TCCTT TCCTT TCCTT T-CCTT TCCT
73144919 CCTCCTAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 19 0.66
6 10 0.34
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (5 bp):
TCCTT
Found at i:73144914 original size:11 final size:10
Alignment explanation
Indices: 73144883--73144918 Score: 54
Period size: 11 Copynumber: 3.4 Consensus size: 10
73144873 CTGTGTATCC
73144883 TCCTTCTCCTT
1 TCCTT-TCCTT
73144894 TCCTTTCCTT
1 TCCTTTCCTT
73144904 TCCTTTCCCTT
1 TCCTTT-CCTT
73144915 TCCT
1 TCCT
73144919 CCTCCTAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 11 0.46
11 13 0.54
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (10 bp):
TCCTTTCCTT
Found at i:73144914 original size:16 final size:16
Alignment explanation
Indices: 73144883--73144924 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
73144873 CTGTGTATCC
73144883 TCCTTCTCCTTTCCTT
1 TCCTTCTCCTTTCCTT
73144899 TCCTT-TCCTTTCCCTT
1 TCCTTCTCCTTT-CCTT
*
73144915 TCCTCCTCCT
1 TCCTTCTCCT
73144925 AGTTTTTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 6 0.26
16 13 0.57
17 4 0.17
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (16 bp):
TCCTTCTCCTTTCCTT
Found at i:73152623 original size:3 final size:3
Alignment explanation
Indices: 73152617--73152654 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
73152607 TATTTTCTTC
73152617 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
73152655 CTATTTGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:73155952 original size:23 final size:23
Alignment explanation
Indices: 73155922--73155968 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
73155912 CATAGCTTAA
73155922 TGCAACTCAATTTAATCCATAAG
1 TGCAACTCAATTTAATCCATAAG
73155945 TGCAACTCAATTTAATCCATAAG
1 TGCAACTCAATTTAATCCATAAG
73155968 T
1 T
73155969 CTAACACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (23 bp):
TGCAACTCAATTTAATCCATAAG
Found at i:73156027 original size:15 final size:15
Alignment explanation
Indices: 73156007--73156045 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
73155997 CATAAAATCA
*
73156007 CAATTCTCATATATT
1 CAATTCTCATACATT
73156022 CAATTCTCATACATT
1 CAATTCTCATACATT
73156037 CAATTCTCA
1 CAATTCTCA
73156046 AATGATTCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (15 bp):
CAATTCTCATACATT
Found at i:73166366 original size:27 final size:27
Alignment explanation
Indices: 73166235--73166365 Score: 183
Period size: 27 Copynumber: 4.9 Consensus size: 27
73166225 ATTACCGAAG
*
73166235 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
73166262 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
73166289 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
73166316 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
73166343 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
73166366 AAAATACCCT
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
26 1 0.01
27 92 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.44
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:73166373 original size:27 final size:27
Alignment explanation
Indices: 73166343--73166596 Score: 228
Period size: 27 Copynumber: 9.4 Consensus size: 27
73166333 ATTACTATTT
** *
73166343 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * **
73166370 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
** *
73166397 TACCCTCGATCAGTAAAATTACCGAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
73166424 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
73166450 TACCC-CTGGTTTGTAAAATTACCGAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
*
73166477 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
73166504 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * * *
73166531 TACCACT-GGTTTGTGAAATTATCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
* *
73166558 TACTCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
73166585 TACCCTTGATTT
1 TACCCTCGATTT
73166597 ACAAAGTTAC
Statistics
Matches: 182, Mismatches: 38, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
26 24 0.13
27 156 0.86
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:73166390 original size:81 final size:81
Alignment explanation
Indices: 73166235--73166390 Score: 199
Period size: 81 Copynumber: 1.9 Consensus size: 81
73166225 ATTACCGAAG
* * **
73166235 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATT
* *
73166300 TATAGAATTATTGTTT
66 TACAAAATTATTGTTT
* * *
73166316 TACCCTTGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTA-C-TAAAATACCCTTGG
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTATCGT--AATACCCTCGA
73166379 TTTACAAAATTA
64 TTTACAAAATTA
73166391 CCAAAATACC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
79 1 0.02
80 1 0.02
81 62 0.97
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATT
TACAAAATTATTGTTT
Found at i:73166401 original size:54 final size:54
Alignment explanation
Indices: 73166343--73166661 Score: 234
Period size: 54 Copynumber: 5.9 Consensus size: 54
73166333 ATTACTATTT
** *
73166343 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
** * * * ** * *
73166397 TACCCTCGATCAGTAAAATTACCGAAATACCC-TAGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * *** **
73166450 TACCC-CTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* *** * *
73166504 TACCC-CTAGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTGAAATTATCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATACC-CTTGGTTTACAAAATTACCAAAA
* * * *
73166558 TACTCTCAATTTGTAAAATTACCAAAATACCCTTGATTTACAAAGTTA-CAGAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCA-AAA
* * *** *
73166612 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTA
1 TACCCTCGA-TTTGT-AAAATTACCAAAATACCCTTGGTTTACAAAATTA
73166662 ATTTACCAAA
Statistics
Matches: 209, Mismatches: 47, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
52 1 0.00
53 44 0.21
54 129 0.62
55 7 0.03
56 28 0.13
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
Found at i:73166401 original size:81 final size:81
Alignment explanation
Indices: 73166222--73166406 Score: 194
Period size: 81 Copynumber: 2.3 Consensus size: 81
73166212 CTCAAATTGT
* * *
73166222 AAAATTACCGAAGTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGT
1 AAAATTACCGAAATACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTATCGT
** *
73166287 TTTACCCTCGATTTAT
66 AATACCCTCGATTTAC
* ** *** *
73166303 AGAATTATTGTTTTACCCTTGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTA-C-T
1 AAAATTACCGAAATACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTATCGT
* *
73166366 AAAATACCCTTGGTTTAC
66 --AATACCCTCGATTTAC
*
73166384 AAAATTACCAAAATACCCTCGAT
1 AAAATTACCGAAATACCCTCGAT
73166407 CAGTAAAATT
Statistics
Matches: 80, Mismatches: 22, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 78 0.98
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (81 bp):
AAAATTACCGAAATACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTATCGT
AATACCCTCGATTTAC
Found at i:73166550 original size:81 final size:80
Alignment explanation
Indices: 73166357--73166589 Score: 315
Period size: 81 Copynumber: 2.9 Consensus size: 80
73166347 CTCGATTTAC
** * * ** *
73166357 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCGA
1 AAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
73166422 AATA-CCCTAGTCTGT
65 AATACCCCTAGTCTGT
*
73166437 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
*
73166502 AATACCCCTAGTTTGT
65 AATACCCCTAGTCTGT
* * * *
73166518 AAAATTACCAAAATACCACTGGTTTGTGAAATTATCGAAATACTCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
73166583 AATACCC
65 AATACCC
73166590 TTGATTTACA
Statistics
Matches: 136, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
80 59 0.43
81 77 0.57
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCCTAGTCTGT
Found at i:73166606 original size:27 final size:26
Alignment explanation
Indices: 73166316--73166661 Score: 128
Period size: 27 Copynumber: 12.8 Consensus size: 26
73166306 ATTATTGTTT
* * ***
73166316 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTA-AAAATTACCAAAA
* *
73166343 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTA-AAAATTACCAAAA
*
73166370 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTA-AAAATTACCAAAA
* * *
73166397 TACCCTCGA-TCAGTAAAATTACCGAAA
1 TACCCTTGATTTA--AAAATTACCAAAA
* * *
73166424 TACCCTAG-TCTGT-AAAATTGCTAAAA
1 TACCCTTGAT-T-TAAAAATTACCAAAA
* * * *
73166450 TACCCCTGGTTTGTAAAATTACCGAAA
1 TACCCTTGATTT-AAAAATTACCAAAA
** *
73166477 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTT-AAAAATTACCAAAA
* *
73166504 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTT-AAAAATTACCAAAA
* ** * *
73166531 TACCAC-TGGTTTGTGAAATTATCGAAA
1 TACC-CTTGATTT-AAAAATTACCAAAA
* ** *
73166558 TACTCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTT-AAAAATTACCAAAA
*
73166585 TACCCTTGATTTACAAAGTTA-CAGAAA
1 TACCCTTGATTTA-AAAATTACCA-AAA
***
73166612 TACCCTTGACTTTCTAAAAATTATGGAAA
1 TACCCTTGA--TT-TAAAAATTACCAAAA
* *
73166641 TACCATTGGTTTACAAAATTA
1 TACCCTTGATTTA-AAAATTA
73166662 ATTTACCAAA
Statistics
Matches: 249, Mismatches: 52, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
25 1 0.00
26 25 0.10
27 201 0.81
28 2 0.01
29 18 0.07
30 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (26 bp):
TACCCTTGATTTAAAAATTACCAAAA
Found at i:73166741 original size:27 final size:27
Alignment explanation
Indices: 73166698--73166770 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
73166688 AAATGACTAA
*
73166698 AATACCCCTATTA-GGTAAAGAGACCGT
1 AATACCCCT-GTAGGGTAAAGAGACCGT
*
73166725 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAGAGACCGT
* *
73166752 AATACCCTTGTATGGTAAA
1 AATACCCCTGTAGGGTAAA
73166771 ATGACGAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
26 3 0.08
27 35 0.90
28 1 0.03
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAGAGACCGT
Found at i:73167647 original size:25 final size:26
Alignment explanation
Indices: 73167576--73167723 Score: 257
Period size: 26 Copynumber: 5.8 Consensus size: 26
73167566 GAGGAAGTGC
73167576 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
73167602 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
73167628 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
73167653 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
73167679 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
73167704 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
73167724 ATTAAAGAGG
Statistics
Matches: 117, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
25 58 0.50
26 59 0.50
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:73167653 original size:51 final size:51
Alignment explanation
Indices: 73167576--73167723 Score: 262
Period size: 51 Copynumber: 2.9 Consensus size: 51
73167566 GAGGAAGTGC
73167576 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCG
**
73167628 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCG
73167679 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
73167724 ATTAAAGAGG
Statistics
Matches: 94, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
50 10 0.11
51 74 0.79
52 10 0.11
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (51 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:73167947 original size:42 final size:42
Alignment explanation
Indices: 73167868--73167959 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
73167858 TAGTCTCCCC
* * ** * *
73167868 AAATAGGCTGGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTGGCATACATCCATTGACATTACACGTGATATTG
*
73167910 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
1 AAATGGGCTGGCATACATCCATTGACATTACACGTGATATTG
73167952 AAATGGGC
1 AAATGGGC
73167960 CTAAGGGCCA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (42 bp):
AAATGGGCTGGCATACATCCATTGACATTACACGTGATATTG
Found at i:73168060 original size:31 final size:31
Alignment explanation
Indices: 73167983--73168061 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
73167973 CGTTTACAGT
* *
73167983 AAAGGCTTCAGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
73168014 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
73168045 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
73168062 AACCGTTCAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:73175073 original size:26 final size:26
Alignment explanation
Indices: 73175037--73175144 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
73175027 TGAAATTTCA
73175037 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73175063 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
73175089 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
73175115 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73175141 ATCA
1 ATCA
73175145 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:73178028 original size:26 final size:26
Alignment explanation
Indices: 73177995--73178045 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
73177985 ATACATAATT
73177995 CCTCAATCTATTACTCAATTTGTTCG
1 CCTCAATCTATTACTCAATTTGTTCG
73178021 CCTCAATCTATTACTCAATTTGTTC
1 CCTCAATCTATTACTCAATTTGTTC
73178046 CTTTTTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.27, G:0.06, T:0.43
Consensus pattern (26 bp):
CCTCAATCTATTACTCAATTTGTTCG
Found at i:73178530 original size:46 final size:45
Alignment explanation
Indices: 73178382--73178550 Score: 153
Period size: 46 Copynumber: 3.7 Consensus size: 45
73178372 GATCAGAGGG
* * *
73178382 TGCCATGGTGTCTTTCAACCATGGTCTTCTTTATTCTTGA-CTTAAT
1 TGCCATGGTGTCTTTCAACCATGGTCTTATTCATT-TTCATCTT-AT
* ** * *
73178428 T-CCATGGTGTCTTTCAGCCATGGTCTTATTCATTTTTTGTCATGT
1 TGCCATGGTGTCTTTCAACCATGGTCTTATTCA-TTTTCATCTTAT
* * **
73178473 TGTCATTGTGTCTTTCAACTTTGGTCTTATTCATTTTCCATCTTAT
1 TGCCATGGTGTCTTTCAACCATGGTCTTATTCATTTT-CATCTTAT
* * *
73178519 TGCCATAGTGTCTTTCAACTACGGTCTTATTC
1 TGCCATGGTGTCTTTCAACCATGGTCTTATTC
73178551 GTTTGATTCG
Statistics
Matches: 99, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
45 36 0.36
46 63 0.64
ACGTcount: A:0.16, C:0.21, G:0.15, T:0.48
Consensus pattern (45 bp):
TGCCATGGTGTCTTTCAACCATGGTCTTATTCATTTTCATCTTAT
Found at i:73178639 original size:45 final size:45
Alignment explanation
Indices: 73178561--73178685 Score: 135
Period size: 45 Copynumber: 2.8 Consensus size: 45
73178551 GTTTGATTCG
* * *
73178561 TGATGCCATAGTGTCTTTCGGCTATTA-TTTTACTCAATAAAATCA
1 TGATGCCATAGCGTCTTTCAGCTA-TAGTCTTACTCAATAAAATCA
* ** * *
73178606 TGATGCCATAGCGTCTTTCAGCTATGGTCTTACTTGATACAATCG
1 TGATGCCATAGCGTCTTTCAGCTATAGTCTTACTCAATAAAATCA
* * *
73178651 TGATGCCATAACATCTTTCAACTATAGTCTTACTC
1 TGATGCCATAGCGTCTTTCAGCTATAGTCTTACTC
73178686 GTTTCTAGTA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
44 1 0.02
45 65 0.98
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (45 bp):
TGATGCCATAGCGTCTTTCAGCTATAGTCTTACTCAATAAAATCA
Found at i:73183414 original size:46 final size:46
Alignment explanation
Indices: 73183343--73183490 Score: 217
Period size: 46 Copynumber: 3.2 Consensus size: 46
73183333 ATAGTGTTGT
* *
73183343 TAGGATATTATTATTAGATTTTATTTTTTACCAATTTGATTCATAA
1 TAGGATATTATTATTAGATATTATTTTTTAGCAATTTGATTCATAA
* *
73183389 TAGGATATTATTATTAGATACTATTTTTTAGCAATTTGATTCTTAA
1 TAGGATATTATTATTAGATATTATTTTTTAGCAATTTGATTCATAA
* * * *
73183435 TAGGATATTATGATTAGATATTATCTTTTAGAAATTTGATTCCTAA
1 TAGGATATTATTATTAGATATTATTTTTTAGCAATTTGATTCATAA
73183481 TA-GATATTAT
1 TAGGATATTAT
73183491 AGGATTTTAT
Statistics
Matches: 93, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
45 8 0.09
46 85 0.91
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.49
Consensus pattern (46 bp):
TAGGATATTATTATTAGATATTATTTTTTAGCAATTTGATTCATAA
Found at i:73186698 original size:15 final size:16
Alignment explanation
Indices: 73186665--73186698 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
73186655 TTATGTTTTC
73186665 AAATGAAATAATGTAA
1 AAATGAAATAATGTAA
*
73186681 AAATTAAATAAT-TAA
1 AAATGAAATAATGTAA
73186696 AAA
1 AAA
73186699 GAATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (16 bp):
AAATGAAATAATGTAA
Found at i:73187537 original size:24 final size:24
Alignment explanation
Indices: 73187510--73187588 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
73187500 AGCAAAAACC
73187510 ATAATTGAAAGATGTCATGACATT
1 ATAATTGAAAGATGTCATGACATT
* * ** * *
73187534 ATAATCGAAA-AGGAAAAGAC--C
1 ATAATTGAAAGATGTCATGACATT
* *
73187555 ATGATTGAAAGATATCATGACATT
1 ATAATTGAAAGATGTCATGACATT
73187579 ATAATTGAAA
1 ATAATTGAAA
73187589 AGGAAAAGAC
Statistics
Matches: 37, Mismatches: 15, Indels: 6
0.64 0.26 0.10
Matches are distributed among these distances:
21 8 0.22
22 5 0.14
23 6 0.16
24 18 0.49
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (24 bp):
ATAATTGAAAGATGTCATGACATT
Found at i:73187664 original size:45 final size:45
Alignment explanation
Indices: 73187496--73187658 Score: 231
Period size: 45 Copynumber: 3.6 Consensus size: 45
73187486 CTTTTTTTGA
* * * *
73187496 GAAAAGCAAAA-ACCATAATTGAAAGATGTCATGACATTATAATC
1 GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
73187540 GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
1 GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
* * *
73187585 GAAAAGGAAAAGACCATGATTAAAAGATATTATGGCATTATAATT
1 GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
*
73187630 GAAAAGGAAAATACCAT-AGTTGAAAGATA
1 GAAAAGGAAAAGACCATGA-TTGAAAGATA
73187659 CTATGGTATT
Statistics
Matches: 108, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
44 11 0.10
45 97 0.90
ACGTcount: A:0.50, C:0.09, G:0.17, T:0.23
Consensus pattern (45 bp):
GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
Found at i:73188462 original size:18 final size:21
Alignment explanation
Indices: 73188418--73188464 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 21
73188408 TGTATTTGAT
*
73188418 ATTAAATAGATATTATTATTT
1 ATTAAATAGATATTATTATTA
*
73188439 AGTAAA-AGATA-T-TTATTA
1 ATTAAATAGATATTATTATTA
73188457 ATTAAATA
1 ATTAAATA
73188465 ATTATATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
18 10 0.45
19 2 0.09
20 5 0.23
21 5 0.23
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (21 bp):
ATTAAATAGATATTATTATTA
Found at i:73189953 original size:12 final size:12
Alignment explanation
Indices: 73189936--73189960 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73189926 GCTGACTACT
73189936 GTTACTGTTACC
1 GTTACTGTTACC
73189948 GTTACTGTTACC
1 GTTACTGTTACC
73189960 G
1 G
73189961 ATTCGGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:73190060 original size:47 final size:47
Alignment explanation
Indices: 73189995--73190107 Score: 181
Period size: 47 Copynumber: 2.4 Consensus size: 47
73189985 TTGTTACTAT
* *
73189995 TACCGTTACTGTTACTGTTTCGGATTTGTTTCGATGAGGTACTCCGTG
1 TACCG-TACTGTTACTGTTCCGGATTTGTTTCAATGAGGTACTCCGTG
*
73190043 TACCGTACTGTTACTGTTCCGGATTTGTTTCAATGAGGTACTCTGTG
1 TACCGTACTGTTACTGTTCCGGATTTGTTTCAATGAGGTACTCCGTG
*
73190090 TACCGTACTGCTACTGTT
1 TACCGTACTGTTACTGTT
73190108 ACTATTACTG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
47 56 0.92
48 5 0.08
ACGTcount: A:0.16, C:0.20, G:0.23, T:0.41
Consensus pattern (47 bp):
TACCGTACTGTTACTGTTCCGGATTTGTTTCAATGAGGTACTCCGTG
Found at i:73190294 original size:18 final size:18
Alignment explanation
Indices: 73190238--73190401 Score: 87
Period size: 18 Copynumber: 8.7 Consensus size: 18
73190228 TAGAAAGATC
73190238 GATTGTTACTGAATAATTT
1 GATTGTTACTGAATAA-TT
* * * *
73190257 AATTATTACTGTATATTT
1 GATTGTTACTGAATAATT
*
73190275 GATTTTTACTGAATAATT
1 GATTGTTACTGAATAATT
*
73190293 GACTGTTACTGGATAACCGATCAATT
1 GATTGTTACT-G---A---AT-AATT
* *
73190319 GATTGATACTGAATAACT
1 GATTGTTACTGAATAATT
* *
73190337 GATTATTATTGAATAATT
1 GATTGTTACTGAATAATT
* *
73190355 GATTGTTACCGAATAACT
1 GATTGTTACTGAATAATT
* * * *
73190373 GACTATTACTAAATAAAT
1 GATTGTTACTGAATAATT
*
73190391 AATTGTT-CTGA
1 GATTGTTACTGA
73190402 TTGACTGATC
Statistics
Matches: 107, Mismatches: 30, Indels: 18
0.69 0.19 0.12
Matches are distributed among these distances:
17 3 0.03
18 72 0.67
19 15 0.14
22 2 0.02
25 3 0.03
26 12 0.11
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.41
Consensus pattern (18 bp):
GATTGTTACTGAATAATT
Found at i:73190388 original size:36 final size:36
Alignment explanation
Indices: 73190315--73190397 Score: 103
Period size: 36 Copynumber: 2.3 Consensus size: 36
73190305 ATAACCGATC
* * * * *
73190315 AATTGATTGATACTGAATAACTGATTATTATTGAAT
1 AATTGATTGTTACCGAATAACTGACTATTACTAAAT
73190351 AATTGATTGTTACCGAATAACTGACTATTACTAAAT
1 AATTGATTGTTACCGAATAACTGACTATTACTAAAT
* *
73190387 AAATAATTGTT
1 AATTGATTGTT
73190398 CTGATTGACT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (36 bp):
AATTGATTGTTACCGAATAACTGACTATTACTAAAT
Found at i:73193188 original size:69 final size:69
Alignment explanation
Indices: 73193077--73193215 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
73193067 GGCGTTCACT
*
73193077 TACTAGTTGGCTTGTCTTTTTGGGACAATCTCGCATTTCCTAGAAAACTAAGAAACAACATACTA
1 TACTAGTTGGCTTGTCTTTTTGGGACAATCTCACATTTCCTAGAAAACTAAGAAACAACATACTA
73193142 TTTC
66 TTTC
73193146 TACTAGTTGGCTTGTCTTTTTGGGACAATCTCACATTTCCTAGAAAACTAAGAAACAACATACTA
1 TACTAGTTGGCTTGTCTTTTTGGGACAATCTCACATTTCCTAGAAAACTAAGAAACAACATACTA
73193211 TTTC
66 TTTC
73193215 T
1 T
73193216 CGTTCATTTG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (69 bp):
TACTAGTTGGCTTGTCTTTTTGGGACAATCTCACATTTCCTAGAAAACTAAGAAACAACATACTA
TTTC
Found at i:73196623 original size:17 final size:17
Alignment explanation
Indices: 73196601--73196643 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
73196591 AAAGTATCTC
* *
73196601 CTTTAGGTTTATTTTCA
1 CTTTAGGTCTATTTGCA
73196618 CTTTAGGTCTATTTGCA
1 CTTTAGGTCTATTTGCA
73196635 CTTTAGGTC
1 CTTTAGGTC
73196644 CTTCCTCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.51
Consensus pattern (17 bp):
CTTTAGGTCTATTTGCA
Found at i:73197571 original size:22 final size:22
Alignment explanation
Indices: 73197543--73197587 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
73197533 AGCTTACAAA
73197543 AAGGACCAAGCCTGATAAAAAG
1 AAGGACCAAGCCTGATAAAAAG
*
73197565 AAGGACCAAGCCTTATAAAAAG
1 AAGGACCAAGCCTGATAAAAAG
73197587 A
1 A
73197588 GGTGTGTGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.51, C:0.18, G:0.20, T:0.11
Consensus pattern (22 bp):
AAGGACCAAGCCTGATAAAAAG
Found at i:73200390 original size:23 final size:23
Alignment explanation
Indices: 73200337--73200386 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
73200327 AAATGTAAAT
73200337 GTAAATATAAGGGGAAGAGTTCA
1 GTAAATATAAGGGGAAGAGTTCA
73200360 GTAAATATAAGGGGAAGAGTTCA
1 GTAAATATAAGGGGAAGAGTTCA
73200383 -TAAA
1 GTAAA
73200387 ATATTGGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 4 0.15
23 23 0.85
ACGTcount: A:0.46, C:0.04, G:0.28, T:0.22
Consensus pattern (23 bp):
GTAAATATAAGGGGAAGAGTTCA
Found at i:73200462 original size:3 final size:3
Alignment explanation
Indices: 73200441--73200483 Score: 61
Period size: 3 Copynumber: 14.0 Consensus size: 3
73200431 GGTACGATTT
73200441 ATA ATA A-A ATA CATAA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
73200484 GTAGTAGTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 2 0.05
3 30 0.81
4 4 0.11
5 1 0.03
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:73205035 original size:20 final size:21
Alignment explanation
Indices: 73204997--73205036 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
73204987 GCATGACGGT
*
73204997 AAGTTGGGCCTCGATGGGCTG
1 AAGTTGGGCCTCAATGGGCTG
73205018 AAGTTGGGCC-CAATGGGCT
1 AAGTTGGGCCTCAATGGGCT
73205037 TTCGGGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.17, C:0.20, G:0.40, T:0.23
Consensus pattern (21 bp):
AAGTTGGGCCTCAATGGGCTG
Found at i:73205045 original size:17 final size:17
Alignment explanation
Indices: 73205023--73205056 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
73205013 GGCTGAAGTT
73205023 GGGCCCAATGGGCTTTC
1 GGGCCCAATGGGCTTTC
73205040 GGGCCCAATGGGCTTTC
1 GGGCCCAATGGGCTTTC
73205057 TGGCTCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.29, G:0.35, T:0.24
Consensus pattern (17 bp):
GGGCCCAATGGGCTTTC
Found at i:73205411 original size:9 final size:10
Alignment explanation
Indices: 73205399--73205455 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
73205389 TATGTGGGAT
73205399 ATGATAT-AC
1 ATGATATGAC
*
73205408 ATGAT-TGAT
1 ATGATATGAC
73205417 ATGATATGCAC
1 ATGATATG-AC
*
73205428 ATGATATG-T
1 ATGATATGAC
73205437 ATGATATGCAC
1 ATGATATG-AC
73205448 ATGATATG
1 ATGATATG
73205456 TATGAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:73205431 original size:20 final size:20
Alignment explanation
Indices: 73205398--73205472 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
73205388 ATATGTGGGA
73205398 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
73205415 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
73205436 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
73205456 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
73205473 GTAATCATAA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:73205433 original size:11 final size:11
Alignment explanation
Indices: 73205417--73205472 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
73205407 CATGATTGAT
73205417 ATGATATGCAC
1 ATGATATGCAC
*
73205428 ATGATATG--T
1 ATGATATGCAC
73205437 ATGATATGCAC
1 ATGATATGCAC
*
73205448 ATGATATG--T
1 ATGATATGCAC
*
73205457 ATGAAATGCAC
1 ATGATATGCAC
73205468 ATGAT
1 ATGAT
73205473 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:73205619 original size:25 final size:26
Alignment explanation
Indices: 73205522--73205619 Score: 171
Period size: 26 Copynumber: 3.8 Consensus size: 26
73205512 GAGGAAGTGC
*
73205522 AAAAGAGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
73205548 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
73205574 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
73205600 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
73205620 ATTAAAGAGG
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
25 10 0.14
26 60 0.86
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:73207615 original size:40 final size:40
Alignment explanation
Indices: 73207569--73207654 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
73207559 AATTATGGGA
** *
73207569 TACTGAATATTGTTTTGAATACCGAATTGAACTGTGAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
* * *
73207609 TACTGAATATTGTTACGTATACTGCATTGAACTGTAAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
*
73207649 TTCTGA
1 TACTGA
73207655 TGAAACGAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (40 bp):
TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
Found at i:73210515 original size:16 final size:16
Alignment explanation
Indices: 73210483--73210520 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
73210473 ATCTAAATAA
73210483 TCAA-ATTCAATCCAT
1 TCAATATTCAATCCAT
* *
73210498 TCAATATTCATTCTAT
1 TCAATATTCAATCCAT
73210514 TCAATAT
1 TCAATAT
73210521 AGTCCAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (16 bp):
TCAATATTCAATCCAT
Found at i:73211903 original size:147 final size:147
Alignment explanation
Indices: 73211636--73211930 Score: 572
Period size: 147 Copynumber: 2.0 Consensus size: 147
73211626 TCTGTTAAAA
73211636 TCATGAGAACTTTACCATAAAAGAATCTATGAGAAAATATATTTAATATTTCCACATTCAATGAT
1 TCATGAGAACTTTACCATAAAAGAATCTATGAGAAAATATATTTAATATTTCCACATTCAATGAT
73211701 TCACTATGACCAAATGATTTATTTCCATTTTTGAACTTCATTTATTAGAAAAACATATATTCAAT
66 TCACTATGACCAAATGATTTATTTCCATTTTTGAACTTCATTTATTAGAAAAACATATATTCAAT
73211766 TTTCAGGCCATTTTTAT
131 TTTCAGGCCATTTTTAT
*
73211783 TCATGAGAACTTTACCATAAAAGAATCTATGAGAAAATATATTTAATATTTCCACATTCAATGGT
1 TCATGAGAACTTTACCATAAAAGAATCTATGAGAAAATATATTTAATATTTCCACATTCAATGAT
*
73211848 TCACTATGACCAAATGATTTATTTCTATTTTTGAACTTCATTTATTAGAAAAACATATATTCAAT
66 TCACTATGACCAAATGATTTATTTCCATTTTTGAACTTCATTTATTAGAAAAACATATATTCAAT
73211913 TTTCAGGCCATTTTTAT
131 TTTCAGGCCATTTTTAT
73211930 T
1 T
73211931 TTTCATTTTC
Statistics
Matches: 146, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
147 146 1.00
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.40
Consensus pattern (147 bp):
TCATGAGAACTTTACCATAAAAGAATCTATGAGAAAATATATTTAATATTTCCACATTCAATGAT
TCACTATGACCAAATGATTTATTTCCATTTTTGAACTTCATTTATTAGAAAAACATATATTCAAT
TTTCAGGCCATTTTTAT
Found at i:73214578 original size:19 final size:19
Alignment explanation
Indices: 73214543--73214640 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
73214533 AGATTACAAG
73214543 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
73214564 ATTATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73214583 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
73214600 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73214619 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73214638 ATC
1 ATC
73214641 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.66
20 1 0.01
21 7 0.10
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:73214611 original size:36 final size:37
Alignment explanation
Indices: 73214543--73214640 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
73214533 AGATTACAAG
*
73214543 ATCATATCTTCAAGATTGCATATTATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
73214583 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
73214619 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
73214641 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:73215098 original size:46 final size:46
Alignment explanation
Indices: 73215031--73215202 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
73215021 GTAACCCGCC
* *
73215031 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATT
1 CATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCACATT
*
73215077 CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACA-T
1 CATAAGCGAACTCAGACTCAACTCAACGAGCTCGG--G-C--GTTCACATT
* * * * * *
73215126 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATC
1 CATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCACATT
* *
73215170 CAAAAGTGAACTCAGACTCAACTCAACGAGCTC
1 CATAAGCGAACTCAGACTCAACTCAACGAGCTC
73215203 AGATGCCCAA
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 57 0.56
47 26 0.25
48 3 0.03
49 3 0.03
50 2 0.02
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCACATT
Found at i:73215145 original size:93 final size:93
Alignment explanation
Indices: 73215037--73215209 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
73215027 CGCCCATAAG
* * * * *
73215037 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATTCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCAAAAGTGAACTCAGACTCAACTCA
*
73215102 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
*
73215130 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCAAAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCAAAAGTGAACTCAGACTCAACTCA
73215195 ACGAGCTCAGATGCC
66 ACGAGCTCAGATGCC
73215210 CAAATATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCAAAAGTGAACTCAGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:73216528 original size:18 final size:20
Alignment explanation
Indices: 73216501--73216539 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
73216491 ATGTTTCCTA
73216501 TTTATCCATTT-TAC-CATT
1 TTTATCCATTTCTACTCATT
*
73216519 TTTATTCATTTCTACTCATT
1 TTTATCCATTTCTACTCATT
73216539 T
1 T
73216540 GAGTCAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 3 0.17
20 5 0.28
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTATCCATTTCTACTCATT
Found at i:73217197 original size:33 final size:33
Alignment explanation
Indices: 73217155--73217221 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
73217145 AGGATTTAGG
73217155 TATGTCACACTATGAACGTTACAAGTGAATAAA
1 TATGTCACACTATGAACGTTACAAGTGAATAAA
73217188 TATGTCACACTATGAACGTTACAAGTGAATAAA
1 TATGTCACACTATGAACGTTACAAGTGAATAAA
73217221 T
1 T
73217222 CCATAAACGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (33 bp):
TATGTCACACTATGAACGTTACAAGTGAATAAA
Found at i:73230613 original size:11 final size:11
Alignment explanation
Indices: 73230597--73230621 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
73230587 AATTTGTGAA
73230597 AAAAATAAAAT
1 AAAAATAAAAT
73230608 AAAAATAAAAT
1 AAAAATAAAAT
73230619 AAA
1 AAA
73230622 GAACACACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:73237595 original size:16 final size:16
Alignment explanation
Indices: 73237574--73237604 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73237564 TATCAGTTAT
*
73237574 AGATACAGATTACAAC
1 AGATACAGAATACAAC
73237590 AGATACAGAATACAA
1 AGATACAGAATACAA
73237605 ATTTCTTACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.16, G:0.13, T:0.16
Consensus pattern (16 bp):
AGATACAGAATACAAC
Found at i:73251706 original size:16 final size:17
Alignment explanation
Indices: 73251685--73251722 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
73251675 CACCTCAACA
*
73251685 AAAAAT-TTAAAATTAT
1 AAAAATATTAAAATAAT
*
73251701 AAAAATATTCAAATAAT
1 AAAAATATTAAAATAAT
73251718 AAAAA
1 AAAAA
73251723 AAATAAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAATATTAAAATAAT
Found at i:73251902 original size:16 final size:18
Alignment explanation
Indices: 73251867--73251904 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
73251857 ATCCTTATTT
*
73251867 AAATAAAATACAGTAGTA
1 AAATAAAATACAGAAGTA
73251885 AAATAAAATA-A-AAGTA
1 AAATAAAATACAGAAGTA
73251901 AAAT
1 AAAT
73251905 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAGAAGTA
Found at i:73261284 original size:22 final size:21
Alignment explanation
Indices: 73261259--73261315 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
73261249 TTAGGGTTTT
73261259 TTAGGGTTTAATT-GATTTAGGG
1 TTAGGGTTT--TTAGATTTAGGG
*
73261281 TTAGTGTTTTTAAGATTTAGGG
1 TTAGGGTTTTT-AGATTTAGGG
73261303 TTAGGGGTTTTTA
1 TTA-GGGTTTTTA
73261316 AAGTTTAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 2 0.07
22 21 0.70
23 7 0.23
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (21 bp):
TTAGGGTTTTTAGATTTAGGG
Found at i:73261323 original size:23 final size:22
Alignment explanation
Indices: 73261272--73261316 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
73261262 GGGTTTAATT
*
73261272 GATTTAGGGTTAGTGTTTTTAA
1 GATTTAGGGTTAGGGTTTTTAA
73261294 GATTTAGGGTTAGGGGTTTTTAA
1 GATTTAGGGTTA-GGGTTTTTAA
73261317 AGTTTAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (22 bp):
GATTTAGGGTTAGGGTTTTTAA
Found at i:73261438 original size:19 final size:19
Alignment explanation
Indices: 73261414--73261503 Score: 96
Period size: 19 Copynumber: 4.8 Consensus size: 19
73261404 AGTTTAGGGT
*
73261414 ATTAAGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
* *
73261433 ATTAAGG---ACTGATTAA
1 ATTAGGGTTAATTGATTAA
73261449 ATTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
*
73261468 ATTTAGGGTTAGTTGATTAA
1 A-TTAGGGTTAATTGATTAA
* *
73261488 TTTGGGGTTAATTGAT
1 ATTAGGGTTAATTGAT
73261504 ACCTAATCGC
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
16 14 0.23
19 29 0.48
20 17 0.28
ACGTcount: A:0.34, C:0.01, G:0.22, T:0.42
Consensus pattern (19 bp):
ATTAGGGTTAATTGATTAA
Found at i:73262291 original size:127 final size:126
Alignment explanation
Indices: 73262022--73262403 Score: 602
Period size: 126 Copynumber: 3.0 Consensus size: 126
73262012 TTTCTACAAG
* *
73262022 AATAATTTTGAGTAGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTA
* * **
73262087 AGCAAAATTTCTAAAAAAAGCTCCCACGTTGACGCTCTTTTGCTACAGTAGTTTGTAGAAA
66 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
* * * * *
73262148 AATAATTCTGAATAGACGTTTCTGGACAAATAGTATCGAAAACGCTTCAAGCAGGATGCACTGTT
1 AATAATTCTGAGTAGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTA
* *
73262213 AGCAAAATTTTTTGAAAAAAGCTCCCACATGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
66 AGCAAAA-TTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
* *
73262275 AATAATTCTGAGTAGACATTTCTGAATAAATAGTGTCGAAAACGCTTCAAGCAGAATGCACTGTA
1 AATAATTCTGAGTAGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTA
* *
73262340 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACACTCTTTTGTTACAGTAGTTCATAGAAA
66 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
73262401 AAT
1 AAT
73262404 GAGGCTATAA
Statistics
Matches: 232, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
126 119 0.51
127 113 0.49
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (126 bp):
AATAATTCTGAGTAGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTA
AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
Found at i:73266539 original size:7 final size:7
Alignment explanation
Indices: 73266529--73266553 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
73266519 CATAATACAT
73266529 AATACTA
1 AATACTA
73266536 AATACTA
1 AATACTA
73266543 AATACTA
1 AATACTA
73266550 AATA
1 AATA
73266554 TGAAACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:73267595 original size:48 final size:47
Alignment explanation
Indices: 73267543--73267677 Score: 164
Period size: 48 Copynumber: 2.8 Consensus size: 47
73267533 ATGCAAACAT
* *
73267543 CATAAATGAAAAAAAAATCAAACAGTATTGAAATATTAACTATAA-TTG
1 CATAAATGAAAAAAATATCAAATAGTATTGAAAT-TTAACTA-AATTTG
* *
73267591 CATAAATGAATAAAATATCAAATAGTATTGCAAATTTAATTAAATTTG
1 CATAAATGAAAAAAATATCAAATAGTATTG-AAATTTAACTAAATTTG
** *
73267639 CATAAATTTAAAAAATATCGAATAGTATTGAAAATTTAA
1 CATAAATGAAAAAAATATCAAATAGTATTG-AAATTTAA
73267678 AATTATCACT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
47 2 0.03
48 70 0.92
49 4 0.05
ACGTcount: A:0.53, C:0.07, G:0.08, T:0.32
Consensus pattern (47 bp):
CATAAATGAAAAAAATATCAAATAGTATTGAAATTTAACTAAATTTG
Found at i:73275981 original size:3 final size:3
Alignment explanation
Indices: 73275973--73276019 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
73275963 ACATATGGAG
* * *
73275973 TAA TAA TAA TAA TAA CAA TAA TAA TGA TAA TAA TAT TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
73276020 GTCATCGTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:73278920 original size:36 final size:36
Alignment explanation
Indices: 73278859--73278930 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
73278849 TATGATTGTA
*
73278859 GATGTTCAAATGCACACTCCAGATTTATGGAATGTT
1 GATGTTCAAATGCAAACTCCAGATTTATGGAATGTT
* * * *
73278895 GATGTTCAAATTCAAACTGCGGATTTATTGAATGTT
1 GATGTTCAAATGCAAACTCCAGATTTATGGAATGTT
73278931 ATAATAGCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (36 bp):
GATGTTCAAATGCAAACTCCAGATTTATGGAATGTT
Found at i:73279619 original size:79 final size:79
Alignment explanation
Indices: 73279448--73279605 Score: 246
Period size: 78 Copynumber: 2.0 Consensus size: 79
73279438 TAGATTCTAG
* * * * *
73279448 AGTTAAAATTGATATTGTATTTATATCATATCTCTATATCATAATCAAGTTTAATATAAAATATA
1 AGTTAAAATTGATATCGTATTTAAATCACATATCTATATCATAATCAAGTTTAACATAAAATATA
73279513 TTCATGTTTTTATT
66 TTCATGTTTTTATT
* *
73279527 AGTTAAAATTGATATCGTATTTAAATTACATATC-ATATCATAATCAAGTTTAACATATAATATA
1 AGTTAAAATTGATATCGTATTTAAATCACATATCTATATCATAATCAAGTTTAACATAAAATATA
73279591 TTCATGTTTTTATT
66 TTCATGTTTTTATT
73279605 A
1 A
73279606 TATAAATTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 43 0.60
79 29 0.40
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.46
Consensus pattern (79 bp):
AGTTAAAATTGATATCGTATTTAAATCACATATCTATATCATAATCAAGTTTAACATAAAATATA
TTCATGTTTTTATT
Found at i:73301184 original size:16 final size:15
Alignment explanation
Indices: 73301164--73301243 Score: 57
Period size: 13 Copynumber: 5.5 Consensus size: 15
73301154 TTCTCATATA
73301164 TATATTATATTATTT
1 TATATTATATTATTT
73301179 TA-A-TATA-TATTT
1 TATATTATATTATTT
*
73301191 TATTCATTATATCATTT
1 TA-T-ATTATATTATTT
*
73301208 TCAT-TATATATTATAT
1 T-ATAT-TATATTATTT
73301224 TAT-TT-TATTATTT
1 TATATTATATTATTT
73301237 TAT-TTAT
1 TATATTAT
73301244 TACTTTGTAC
Statistics
Matches: 53, Mismatches: 4, Indels: 17
0.72 0.05 0.23
Matches are distributed among these distances:
12 7 0.13
13 16 0.30
14 3 0.06
15 7 0.13
16 13 0.25
17 6 0.11
18 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.64
Consensus pattern (15 bp):
TATATTATATTATTT
Found at i:73301220 original size:21 final size:20
Alignment explanation
Indices: 73301196--73301234 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
73301186 TATTTTATTC
73301196 ATTATATCATTTTCATTATAT
1 ATTATATCATTTT-ATTATAT
*
73301217 ATTATATTATTTTATTAT
1 ATTATATCATTTTATTAT
73301235 TTTATTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTATATCATTTTATTATAT
Found at i:73301243 original size:29 final size:28
Alignment explanation
Indices: 73301160--73301240 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
73301150 CGCTTTCTCA
*
73301160 TATATATATTATATTATTTTAATATATAT
1 TATAT-TATTATATTATTTTATTATATAT
* *
73301189 TTTATTCATTATATCATTTTCATTATATAT
1 TATATT-ATTATATTATTTT-ATTATATAT
*
73301219 TATATTATTTTATTATTTTATT
1 TATATTATTATATTATTTTATT
73301241 TATTACTTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
28 4 0.09
29 27 0.61
30 13 0.30
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (28 bp):
TATATTATTATATTATTTTATTATATAT
Found at i:73303353 original size:96 final size:96
Alignment explanation
Indices: 73303225--73303414 Score: 371
Period size: 96 Copynumber: 2.0 Consensus size: 96
73303215 TCAAGATGGC
*
73303225 TAAGTATCTGTTTCGAGCTATGGTATAGTTTTGGAACCCTGCTTATAGTTGTTTTACATTTGGAG
1 TAAGTATCTGTTTCGAGCTATGGTATAGTTTTGGAACCCCGCTTATAGTTGTTTTACATTTGGAG
73303290 AGGTAGACTTAGTACCTACTTTGGAGGAGGA
66 AGGTAGACTTAGTACCTACTTTGGAGGAGGA
73303321 TAAGTATCTGTTTCGAGCTATGGTATAGTTTTGGAACCCCGCTTATAGTTGTTTTACATTTGGAG
1 TAAGTATCTGTTTCGAGCTATGGTATAGTTTTGGAACCCCGCTTATAGTTGTTTTACATTTGGAG
73303386 AGGTAGACTTAGTACCTACTTTGGAGGAG
66 AGGTAGACTTAGTACCTACTTTGGAGGAG
73303415 TATACGACCT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (96 bp):
TAAGTATCTGTTTCGAGCTATGGTATAGTTTTGGAACCCCGCTTATAGTTGTTTTACATTTGGAG
AGGTAGACTTAGTACCTACTTTGGAGGAGGA
Found at i:73313354 original size:44 final size:43
Alignment explanation
Indices: 73313299--73313748 Score: 702
Period size: 44 Copynumber: 10.2 Consensus size: 43
73313289 GTAGATCACC
*
73313299 GATAGCAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAA
1 GATA-CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
73313343 GATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GAT-ACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * *
73313387 GATAACAGATTTGGTGTCTCTCTATTGATAGAGAGCAGATCGAA
1 GAT-ACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
*
73313431 GATGACAGATTTGGCGTCTCTGTATTGACAGAGAGTAGATCGAA
1 GAT-ACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
73313475 GATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GAT-ACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
*
73313519 GATAACAGATTTGGCGTCTCTGTATTGATAGAGAGCAGATCGAA
1 GAT-ACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * *
73313563 GATAACAGATTTGGCATATCTGTACTGACAGAGAGCAGATCGAA
1 GAT-ACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
73313607 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GATA-CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
73313651 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GATA-CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* *
73313695 GATAGCAGATTTGGCGTCTATGTATTGACAGAGAACAGATCGAA
1 GATA-CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
73313739 GATAGCAGAT
1 GATA-CAGAT
73313749 CTGACATTTG
Statistics
Matches: 382, Mismatches: 22, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
43 1 0.00
44 380 0.99
45 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.26
Consensus pattern (43 bp):
GATACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
Found at i:73315481 original size:29 final size:29
Alignment explanation
Indices: 73315430--73315505 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
73315420 TACGCTTTAT
*
73315430 CATATA-TATA-TATTATATTATTTT-AA
1 CATATATTATATTATTATATCATTTTCAA
* *
73315456 CATATATTTTATTCATTATATCATTTTCAT
1 CATATATTATATT-ATTATATCATTTTCAA
*
73315486 TATATATTATATTATTATAT
1 CATATATTATATTATTATAT
73315506 TATATTATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 6 0.15
27 3 0.07
28 1 0.02
29 19 0.46
30 12 0.29
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (29 bp):
CATATATTATATTATTATATCATTTTCAA
Found at i:73315511 original size:13 final size:13
Alignment explanation
Indices: 73315484--73315527 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
73315474 TATCATTTTC
73315484 ATTA-TATATTAT
1 ATTATTATATTAT
73315496 ATTATTATATTAT
1 ATTATTATATTAT
*
73315509 ATTATTATTTTA-
1 ATTATTATATTAT
73315521 ATTATTA
1 ATTATTA
73315528 CTATGGACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 11 0.37
13 19 0.63
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
ATTATTATATTAT
Found at i:73318118 original size:22 final size:21
Alignment explanation
Indices: 73318088--73318134 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
73318078 TACAAATTAA
73318088 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
73318110 ATCTTCAAGATTTCATATCAT
1 ATCTCCAAGATTACAGATCAT
73318131 ATCT
1 ATCT
73318135 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.36
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:73318140 original size:19 final size:19
Alignment explanation
Indices: 73318105--73318183 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
73318095 AGATTACAAG
*
73318105 ATCATATCTTCAAGATTTCAT
1 ATCATATC-T-AAGATTGCAT
73318126 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
73318143 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73318162 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73318181 ATC
1 ATC
73318184 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
20 1 0.02
21 8 0.15
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:73318163 original size:36 final size:38
Alignment explanation
Indices: 73318105--73318177 Score: 123
Period size: 36 Copynumber: 2.0 Consensus size: 38
73318095 AGATTACAAG
*
73318105 ATCATATCTTCAAGATTTCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
73318143 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
73318178 CATATCCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
37 1 0.03
38 8 0.24
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.40
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:73318192 original size:36 final size:35
Alignment explanation
Indices: 73318106--73318193 Score: 108
Period size: 36 Copynumber: 2.4 Consensus size: 35
73318096 GATTACAAGA
*
73318106 TCATATCTTCAAGATTTCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
73318142 TATCATATC-TAAGATTGCATATCATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
73318178 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
73318194 ATATTTCCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 31 0.67
37 1 0.02
38 7 0.15
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:73319070 original size:84 final size:84
Alignment explanation
Indices: 73318924--73319451 Score: 757
Period size: 84 Copynumber: 6.3 Consensus size: 84
73318914 ATCATCTTGG
* * * *
73318924 ACCCTACTGCTTAGGGGGTTAAGGTGCATTGTCTTCAATCTGCT-CGCTACTGCTTA-GG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
* *
73318986 AGATTTGTAAATTTAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* * *
73319008 ACCCTACTTCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
73319073 TCTGCAAATTTAACCTATT
66 TCTGCAAATTTAACCTGTT
*
73319092 ACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCATCGATCTGCTCCGCTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
*
73319157 AGATCTGC-----GAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
*
73319174 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
73319239 TATGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
73319258 ACCTTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* *
73319323 TATACAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
73319342 ACCCTGCTGCTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
73319407 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
73319426 ACCCTACTGCTTATGGGATTAAGGCG
1 ACCCTACTGCTTAGGGGATTAAGGCG
73319452 CTGAATGTTG
Statistics
Matches: 401, Mismatches: 32, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
79 36 0.09
81 14 0.03
82 47 0.12
83 2 0.00
84 264 0.66
85 1 0.00
87 37 0.09
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:73319365 original size:250 final size:247
Alignment explanation
Indices: 73318924--73319452 Score: 758
Period size: 250 Copynumber: 2.1 Consensus size: 247
73318914 ATCATCTTGG
* * * *
73318924 ACCCTACTGCTTAGGGGGTTAAGGTGCATTGTCTTCAATCTGCTCGCTACTGCTTAGGGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGCA-TGTCTTCAATCTACTCACTACTGCTTAGGGATAAGA
* * ** *
73318989 TTTGTAAATTTAACCTGTTACCCTACTTCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACT
65 TATGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACT
* *
73319054 ACTACTTAGGGAGATAAGATCTGCAAATTTAACCTATTACCCTACTGCTTAGGGGATTAAGGCGA
130 ACTACTTAGGGAGATAAGATATACAAATTTAACCTATTACCCTACTGCTTAGGGGATTAAGGCGA
*
73319119 GTCGTCATCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGC-GAACCTGTT
195 GTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAGAACCTGTT
*
73319174 ACCCTACTGCTTAGGGGATTAAGGCG-A-GTCTTCGATCTACTCCACTACTGCTTAGGGAGATAA
1 ACCCTACTGCTTAGGGGATTAAGGCGCATGTCTTCAATCTACT-CACTACTGCTTA-GG-GATAA
*
73319237 GATATGCAAATTTAACCTGTTACCTTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
63 GATATGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
* * *
73319302 CTACTGCTTAGGGAGATAAGATATACAAATTTAACCTGTTACCCTGCTGCTTAGGGGATTAAGGC
128 CTACTACTTAGGGAGATAAGATATACAAATTTAACCTATTACCCTACTGCTTAGGGGATTAAGGC
* *
73319367 GAGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
193 GAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC--A--GAACCTGTT
*
73319426 ACCCTACTGCTTATGGGATTAAGGCGC
1 ACCCTACTGCTTAGGGGATTAAGGCGC
73319453 TGAATGTTGT
Statistics
Matches: 250, Mismatches: 20, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
247 49 0.20
248 11 0.04
249 4 0.02
250 153 0.61
252 33 0.13
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (247 bp):
ACCCTACTGCTTAGGGGATTAAGGCGCATGTCTTCAATCTACTCACTACTGCTTAGGGATAAGAT
ATGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTA
CTACTTAGGGAGATAAGATATACAAATTTAACCTATTACCCTACTGCTTAGGGGATTAAGGCGAG
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAGAACCTGTT
Found at i:73319434 original size:43 final size:43
Alignment explanation
Indices: 73319218--73319443 Score: 152
Period size: 43 Copynumber: 5.3 Consensus size: 43
73319208 ATCTACTCCA
73319218 CTACTGCTTAGGGAGATAAGATATGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATATGCAAATTTAACCTGTTACC
* * * * * * *
73319261 TTACCGCTTAGGG-GATTAAG----GCGAGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATATGCAAAT-TT-AACCTGTTACC
*
73319301 ACTACTGCTTAGGGAGATAAGATATACAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATATGCAAATTTAACCTGTTACC
* ** * * *
73319345 CTGCTGCTTAGGG-GATTAAG----GCGAGTCTTTGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATATGC-A-AATTTAACCTGTTACC
*
73319385 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATATGCAAATTTAACCTGTTACC
73319429 CTACTGCTTATGGGA
1 CTACTGCTTA-GGGA
73319444 TTAAGGCGCT
Statistics
Matches: 134, Mismatches: 28, Indels: 41
0.66 0.14 0.20
Matches are distributed among these distances:
39 5 0.04
40 7 0.05
41 44 0.33
42 8 0.06
43 54 0.40
44 11 0.08
45 5 0.04
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATATGCAAATTTAACCTGTTACC
Done.