Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 222 of 343
Found at i:73320411 original size:7 final size:7
Alignment explanation
Indices: 73320399--73320463 Score: 62
Period size: 7 Copynumber: 8.9 Consensus size: 7
73320389 GGCCTCTCCA
73320399 TTTTTCT
1 TTTTTCT
73320406 TTTTTCTTT
1 TTTTTC--T
73320415 TTTTCTCT
1 TTTT-TCT
73320423 TTTTTCT
1 TTTTTCT
73320430 TTTTAT-T
1 TTTT-TCT
73320437 TTTTTCT
1 TTTTTCT
73320444 CTTTTTCT
1 -TTTTTCT
*
73320452 TTTCT-T
1 TTTTTCT
73320458 TTTTTC
1 TTTTTC
73320464 CCTTTTTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
6 6 0.12
7 23 0.47
8 13 0.27
9 5 0.10
10 2 0.04
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTCT
Found at i:73320416 original size:8 final size:8
Alignment explanation
Indices: 73320399--73320472 Score: 66
Period size: 8 Copynumber: 9.6 Consensus size: 8
73320389 GGCCTCTCCA
73320399 TTTTTC-T
1 TTTTTCTT
73320406 TTTTTCTT
1 TTTTTCTT
73320414 TTTTTCTCT
1 TTTTTCT-T
73320423 TTTTTC--
1 TTTTTCTT
*
73320429 TTTTTATT
1 TTTTTCTT
*
73320437 TTTTTCTC
1 TTTTTCTT
73320445 TTTTTCTT
1 TTTTTCTT
*
73320453 TTCTT-TT
1 TTTTTCTT
**
73320460 TTTCCCTT
1 TTTTTCTT
73320468 TTTTT
1 TTTTT
73320473 TTGAAATAGA
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
6 5 0.10
7 10 0.19
8 30 0.58
9 7 0.13
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTCTT
Found at i:73320425 original size:23 final size:22
Alignment explanation
Indices: 73320399--73320474 Score: 100
Period size: 23 Copynumber: 3.4 Consensus size: 22
73320389 GGCCTCTCCA
73320399 TTTTTCTTTTTTCTTTTTTTCTC
1 TTTTT-TTTTTTCTTTTTTTCTC
*
73320422 TTTTTTCTTTTTATTTTTTTCTC
1 TTTTTT-TTTTTCTTTTTTTCTC
* *
73320445 -TTTTTCTTTTCTTTTTTTCCC
1 TTTTTTTTTTTCTTTTTTTCTC
73320466 TTTTTTTTT
1 TTTTTTTTT
73320475 GAAATAGAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.28
22 13 0.28
23 20 0.43
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.83
Consensus pattern (22 bp):
TTTTTTTTTTTCTTTTTTTCTC
Found at i:73320470 original size:31 final size:31
Alignment explanation
Indices: 73320405--73320472 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
73320395 TCCATTTTTC
* *
73320405 TTTTTTCTTTTTTTCTCTTTTTTCTTTTTAT
1 TTTTTTCTCTTTTTCTCTTTTTTCTTTTCAT
*
73320436 TTTTTTCTCTTTTTCT-TTTCTTT-TTTTCCCT
1 TTTTTTCTCTTTTTCTCTTT-TTTCTTTT-CAT
73320467 TTTTTT
1 TTTTTT
73320473 TTGAAATAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.82
Consensus pattern (31 bp):
TTTTTTCTCTTTTTCTCTTTTTTCTTTTCAT
Found at i:73322261 original size:12 final size:12
Alignment explanation
Indices: 73322246--73322271 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73322236 TTGTTTTGTC
73322246 TCTTCAGCTAAT
1 TCTTCAGCTAAT
73322258 TCTTCAGCTAAT
1 TCTTCAGCTAAT
73322270 TC
1 TC
73322272 CAATTTCGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.08, T:0.42
Consensus pattern (12 bp):
TCTTCAGCTAAT
Found at i:73326090 original size:22 final size:21
Alignment explanation
Indices: 73326060--73326106 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
73326050 TACAAATTAA
73326060 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
73326082 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
73326103 ATCT
1 ATCT
73326107 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:73326112 original size:19 final size:19
Alignment explanation
Indices: 73326077--73326155 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
73326067 AGATTACAAG
73326077 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
73326098 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
73326115 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73326134 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73326153 ATC
1 ATC
73326156 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:73326132 original size:36 final size:38
Alignment explanation
Indices: 73326077--73326149 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
73326067 AGATTACAAG
73326077 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
73326115 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
73326150 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:73326164 original size:36 final size:35
Alignment explanation
Indices: 73326078--73326165 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 35
73326068 GATTACAAGA
73326078 TCATATCTTCAAGATTGCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
73326114 TATCATATC-TAAGATTGCATATCATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
73326150 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
73326166 ATATTTCCAT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 32 0.68
37 1 0.02
38 7 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:73331751 original size:86 final size:85
Alignment explanation
Indices: 73331648--73331813 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 85
73331638 CAAAATTTCG
* * * * * ** *
73331648 CAAACGCCACTATAGAACATGACCTTTAGCGGCGTTTCTCACAAAAATGCCGCTATGGAACATGA
1 CAAACACCACTATAGAACATGAACTTTAGCGGCGCTT-TAACAAAAACGCCGCTAAAGAACAAGA
*
73331713 CCTTTAGTGGCACTTTTACCA
65 CCTTTAGCGGCACTTTTACCA
* *
73331734 CAAACACCGCTATAGAACATGAACTTTAGCGGCGCTTTAAGAAAAACGCCGCTAAAGAACAAGAC
1 CAAACACCACTATAGAACATGAACTTTAGCGGCGCTTTAACAAAAACGCCGCTAAAGAACAAGAC
*
73331799 TTTTAGCGGCACTTT
66 CTTTAGCGGCACTTT
73331814 AAGAAAAATG
Statistics
Matches: 68, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
85 35 0.51
86 33 0.49
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (85 bp):
CAAACACCACTATAGAACATGAACTTTAGCGGCGCTTTAACAAAAACGCCGCTAAAGAACAAGAC
CTTTAGCGGCACTTTTACCA
Found at i:73331804 original size:42 final size:42
Alignment explanation
Indices: 73331649--73331875 Score: 184
Period size: 42 Copynumber: 5.3 Consensus size: 42
73331639 AAAATTTCGC
* * * * *
73331649 AAACGCCACTATAGAACATGACCTTTAGCGGCGTTTCTCACAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTT-TAAGAA
* ** * * ** *
73331692 AAATGCCGCTATGGAACATGACCTTTAGTGGCACTTTTACCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGC-TTTAAGAA
* * *
73331735 AAACACCGCTATAGAACATGAACTTTAGCGGCGCTTTAAGAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTAAGAA
* * *
73331777 AAACGCCGCTAAAGAACAAGACTTTTAGCGGCACTTTAAGAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTAAGAA
* ** * * * * *
73331819 AAATGCTACTAAAGAATAAGACTTTTAGCGACGCTTTAGTGAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTA-AGAA
73331862 AAACGCCGCTAAAG
1 AAACGCCGCTAAAG
73331876 GTCACATTTT
Statistics
Matches: 148, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
42 73 0.49
43 73 0.49
44 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTAAGAA
Found at i:73332040 original size:19 final size:19
Alignment explanation
Indices: 73332018--73332068 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
73332008 CAACCAAAAA
* *
73332018 CAGCAAATACAAAGTCATC
1 CAGCAAATACAAAGCCAAC
73332037 CAGCAAATACAAAGCCAAC
1 CAGCAAATACAAAGCCAAC
73332056 CAG-AAATAGCAAA
1 CAGCAAATA-CAAA
73332069 TATAAATGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 5 0.17
19 24 0.83
ACGTcount: A:0.53, C:0.25, G:0.12, T:0.10
Consensus pattern (19 bp):
CAGCAAATACAAAGCCAAC
Found at i:73340128 original size:61 final size:60
Alignment explanation
Indices: 73340018--73340192 Score: 221
Period size: 61 Copynumber: 2.9 Consensus size: 60
73340008 CCAACTGTGT
* * * *
73340018 TGATATGGGCAAGGCCCAATATA-TCTCGACTTGTAATAGGGCTACGGCCCAGATTAATAC
1 TGATATGGGCTAGGCCCAGTATACTCT-GATTTGTAATAGGGCTATGGCCCAGATTAATAC
73340078 TGATATGGGCTAGGCCCAGTATACTCTGATATTGTAATAGGGCTATGGCCCAGATTAATAC
1 TGATATGGGCTAGGCCCAGTATACTCTGAT-TTGTAATAGGGCTATGGCCCAGATTAATAC
* *
73340139 TGATATGGGCTAAGGCCCAGT-TAACACTGATTTCTGAATAGGGCT-TAGGCCCAG
1 TGATATGGGCT-AGGCCCAGTAT-ACTCTGATTTGT-AATAGGGCTAT-GGCCCAG
73340193 TAAAGCTTGA
Statistics
Matches: 103, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
60 23 0.22
61 48 0.47
62 32 0.31
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (60 bp):
TGATATGGGCTAGGCCCAGTATACTCTGATTTGTAATAGGGCTATGGCCCAGATTAATAC
Found at i:73340157 original size:28 final size:28
Alignment explanation
Indices: 73340056--73340169 Score: 99
Period size: 28 Copynumber: 3.9 Consensus size: 28
73340046 ACTTGTAATA
*
73340056 GGGCTACGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
73340084 GGGCT-AGGCCCAGTATACTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG---A-T-TAATACTGAT-AT
*
73340116 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
*
73340145 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
73340170 TTCTGAATAG
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
27 17 0.25
28 18 0.26
29 8 0.12
30 3 0.04
31 3 0.04
32 8 0.12
33 5 0.07
34 7 0.10
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:73344538 original size:27 final size:27
Alignment explanation
Indices: 73344508--73344631 Score: 119
Period size: 27 Copynumber: 4.6 Consensus size: 27
73344498 TGGTAATAAA
*
73344508 TTATGTAAGTTATGATATGATATATAT
1 TTATGTAAGTTATGATATGATGTATAT
* * *
73344535 TTATGTAAGTTATGTAAATTG-CGTA-AG
1 TTATGTAAGTTATG-ATA-TGATGTATAT
*
73344562 TTATGTAAGTTATGATATGATGTTTAT
1 TTATGTAAGTTATGATATGATGTATAT
* * * *
73344589 TTATGTAAGTTATGTAAATTATGT-GAG
1 TTATGTAAGTTATG-ATATGATGTATAT
73344616 TTATGTAAGTTATGAT
1 TTATGTAAGTTATGAT
73344632 TAGCATCTTT
Statistics
Matches: 79, Mismatches: 13, Indels: 11
0.77 0.13 0.11
Matches are distributed among these distances:
25 2 0.03
26 5 0.06
27 59 0.75
28 11 0.14
29 2 0.03
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (27 bp):
TTATGTAAGTTATGATATGATGTATAT
Found at i:73344547 original size:9 final size:9
Alignment explanation
Indices: 73344535--73344629 Score: 86
Period size: 9 Copynumber: 10.6 Consensus size: 9
73344525 TGATATATAT
73344535 TTATGTAAG
1 TTATGTAAG
*
73344544 TTATGTAAA
1 TTATGTAAG
**
73344553 TTGCGTAAG
1 TTATGTAAG
73344562 TTATGTAAG
1 TTATGTAAG
73344571 TTATG-ATA-
1 TTATGTA-AG
* * *
73344579 TGATGTTTAT
1 TTATG-TAAG
73344589 TTATGTAAG
1 TTATGTAAG
*
73344598 TTATGTAAA
1 TTATGTAAG
*
73344607 TTATGTGAG
1 TTATGTAAG
73344616 TTATGTAAG
1 TTATGTAAG
73344625 TTATG
1 TTATG
73344630 ATTAGCATCT
Statistics
Matches: 67, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
8 5 0.07
9 58 0.87
10 4 0.06
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:73344578 original size:54 final size:54
Alignment explanation
Indices: 73344508--73344631 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
73344498 TGGTAATAAA
*
73344508 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAATTGCGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAATTACGTAAG
* * * *
73344562 TTATGTAAGTTATGATATGATGTTTATTTATGTAAGTTATGTAAATTATGTGAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAATTACGTAAG
73344616 TTATGTAAGTTATGAT
1 TTATGTAAGTTATGAT
73344632 TAGCATCTTT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (54 bp):
TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAATTACGTAAG
Found at i:73345132 original size:25 final size:25
Alignment explanation
Indices: 73345099--73345148 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
73345089 TTATAGAGAA
*
73345099 AAAAAATTGCAGATAGCTTTAGTAC
1 AAAAAATTGCAAATAGCTTTAGTAC
73345124 AAAAAATTGCAAATAGCTTTAGTAC
1 AAAAAATTGCAAATAGCTTTAGTAC
73345149 CTTTAATATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (25 bp):
AAAAAATTGCAAATAGCTTTAGTAC
Found at i:73347421 original size:7 final size:7
Alignment explanation
Indices: 73347399--73347498 Score: 51
Period size: 7 Copynumber: 14.1 Consensus size: 7
73347389 TTTTAGGAAC
73347399 ACCATAAA
1 ACCAT-AA
*
73347407 ACCCTAA
1 ACCATAA
73347414 ACCATAA
1 ACCATAA
73347421 ACCATAA
1 ACCATAA
* *
73347428 CCCCTAA
1 ACCATAA
73347435 ACCATATA
1 ACCATA-A
*
73347443 ACCCT-A
1 ACCATAA
* *
73347449 GCCCTAAA
1 ACCAT-AA
*
73347457 ACCCTAA
1 ACCATAA
*
73347464 ATCATAA
1 ACCATAA
*
73347471 ACCACAA
1 ACCATAA
* *
73347478 ATCTTAA
1 ACCATAA
73347485 ACCA-AA
1 ACCATAA
*
73347491 ACCCTAA
1 ACCATAA
73347498 A
1 A
73347499 TTATATAGCC
Statistics
Matches: 69, Mismatches: 19, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
6 10 0.14
7 45 0.65
8 14 0.20
ACGTcount: A:0.49, C:0.34, G:0.01, T:0.16
Consensus pattern (7 bp):
ACCATAA
Found at i:73347434 original size:21 final size:23
Alignment explanation
Indices: 73347399--73347445 Score: 71
Period size: 21 Copynumber: 2.1 Consensus size: 23
73347389 TTTTAGGAAC
73347399 ACCATAAAACCCTAAACCATA-A
1 ACCATAAAACCCTAAACCATATA
*
73347421 ACCAT-AACCCCTAAACCATATA
1 ACCATAAAACCCTAAACCATATA
73347443 ACC
1 ACC
73347446 CTAGCCCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.49, C:0.36, G:0.00, T:0.15
Consensus pattern (23 bp):
ACCATAAAACCCTAAACCATATA
Found at i:73347486 original size:50 final size:48
Alignment explanation
Indices: 73347403--73347496 Score: 125
Period size: 50 Copynumber: 1.9 Consensus size: 48
73347393 AGGAACACCA
* *
73347403 TAAAACCCTAAACCATAAACCATAACCCCTAAACCATATAACCCTAGCCC
1 TAAAACCCTAAACCATAAACCACAAACCCTAAACCA-A-AACCCTAGCCC
* * *
73347453 TAAAACCCTAAATCATAAACCACAAATCTTAAACCAAAACCCTA
1 TAAAACCCTAAACCATAAACCACAAACCCTAAACCAAAACCCTA
73347497 AATTATATAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 7 0.18
49 1 0.03
50 31 0.79
ACGTcount: A:0.48, C:0.34, G:0.01, T:0.17
Consensus pattern (48 bp):
TAAAACCCTAAACCATAAACCACAAACCCTAAACCAAAACCCTAGCCC
Found at i:73347628 original size:14 final size:14
Alignment explanation
Indices: 73347598--73347636 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
73347588 CATATACACT
*
73347598 AACCTTAAAATCACA
1 AACCTT-AAACCACA
*
73347613 AATCTTAAACCACA
1 AACCTTAAACCACA
73347627 AACCTTAAAC
1 AACCTTAAAC
73347637 TATATAGCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (14 bp):
AACCTTAAACCACA
Found at i:73347688 original size:23 final size:21
Alignment explanation
Indices: 73347662--73347710 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 21
73347652 CATGAAACCA
73347662 TAAATCAC-AAACCTTATAATCAC
1 TAAA-CACGAAACCTTA-AA-CAC
73347685 TAAACACGAAACCTTAAACAC
1 TAAACACGAAACCTTAAACAC
73347706 TAAAC
1 TAAAC
73347711 TTTAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.32
22 5 0.20
23 12 0.48
ACGTcount: A:0.51, C:0.27, G:0.02, T:0.20
Consensus pattern (21 bp):
TAAACACGAAACCTTAAACAC
Found at i:73347736 original size:137 final size:137
Alignment explanation
Indices: 73347473--73347745 Score: 388
Period size: 137 Copynumber: 2.0 Consensus size: 137
73347463 AATCATAAAC
* **
73347473 CACAAATCTTAAACCAAAACCCTAAATTATATAGCCACTAAACATGAAACCATAAATCTTAAATC
1 CACAAATCTTAAACCAAAACCCTAAACTATATAGCCACTAAACATGAAACCATAAATCACAAATC
* * ** *
73347538 CTATAATCACTAAACACGAAATCTTAAACCCTAAACTATAACCCTTAAACCATATACACT-AACC
66 CTATAATCACTAAACACGAAACCTTAAACACTAAACTATAAAACTTAAACCATAAACACTAAACC
*
73347602 TTAAAAT
131 CTAAAAT
* *
73347609 CACAAATCTTAAACCACAAACCTTAAACTATATAGCTACTAAACATGAAACCATAAATCACAAA-
1 CACAAATCTTAAACCA-AAACCCTAAACTATATAGCCACTAAACATGAAACCATAAATCACAAAT
* * *
73347673 CCTTATAATCACTAAACACGAAACCTTAAACACTAAACTTTAAAATTTAAACCATAAATACTAAA
65 CC-TATAATCACTAAACACGAAACCTTAAACACTAAACTATAAAACTTAAACCATAAACACTAAA
73347738 CCCTAAAA
129 CCCTAAAA
73347746 CCATAACTAA
Statistics
Matches: 120, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
136 18 0.15
137 93 0.77
138 9 0.08
ACGTcount: A:0.49, C:0.25, G:0.02, T:0.23
Consensus pattern (137 bp):
CACAAATCTTAAACCAAAACCCTAAACTATATAGCCACTAAACATGAAACCATAAATCACAAATC
CTATAATCACTAAACACGAAACCTTAAACACTAAACTATAAAACTTAAACCATAAACACTAAACC
CTAAAAT
Found at i:73348033 original size:84 final size:84
Alignment explanation
Indices: 73347926--73348368 Score: 365
Period size: 83 Copynumber: 5.3 Consensus size: 84
73347916 TAGTCTTTTA
* * ** *
73347926 AGGCAAA-TGGTATTGCAACTTTGCGGCGTTTTTTAAAAACACCACTAAAATTTTAATGCTTTGT
1 AGGCAAATTAGTATTGCAAATTTGCGGCGTTTTTTAAAAAGGCCACTAAAAATTTAATGCTTTGT
* * *
73347990 AATGAAACAACACCGTTGG
66 AATGAAACGACGCCGTTTG
* * * * * ** *
73348009 AGACAAATTAGTATTGCAAATTTGCGGCGTTTGTGAAAAATGCCACTAAAAATTTAATTCCCTAT
1 AGGCAAATTAGTATTGCAAATTTGCGGCGTTTTTTAAAAAGGCCACTAAAAATTTAATGCTTTGT
** * * *
73348074 TGTGAAACGATGTCGTTTA
66 AATGAAACGACGCCGTTTG
* * * * *
73348093 AGGCAAA-TAGTATTGCAACTTTGCGGCATTTCTTAAAAATGCCACTAAAATTTTAATGCTTTGT
1 AGGCAAATTAGTATTGCAAATTTGCGGCGTTTTTTAAAAAGGCCACTAAAAATTTAATGCTTTGT
* *
73348157 AATGAAACGACGCCATTGG
66 AATGAAACGACGCCGTTTG
* * * * * * ** * * **
73348176 AGTCGAATTGGTATTGCAAATTTGCAGC-TTTTGTGAAAAATGAAACTAAAAATTTAGTTCCCTG
1 AGGCAAATTAGTATTGCAAATTTGCGGCGTTTT-TTAAAAAGGCCACTAAAAATTTAATGCTTTG
** ** *
73348240 TTGTGAAACGAC-TTGTTTA
65 TAATGAAACGACGCCGTTTG
* * * *
73348259 AGGCAAA-TGGTTATTGCAATTTTGCGGCGTTTTTTAAAAAGGTCACTAAAAGTTTAATGCTTTG
1 AGGCAAATTAG-TATTGCAAATTTGCGGCGTTTTTTAAAAAGGCCACTAAAAATTTAATGCTTTG
73348323 TAATGAAACGACGCCGTTTG
65 TAATGAAACGACGCCGTTTG
* *
73348343 AGTCAAATTTATTATTGCAAATTTGC
1 AGGCAAA-TTAGTATTGCAAATTTGC
73348369 AGTTGTGTGG
Statistics
Matches: 272, Mismatches: 80, Indels: 14
0.74 0.22 0.04
Matches are distributed among these distances:
82 3 0.01
83 128 0.47
84 127 0.47
85 13 0.05
86 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (84 bp):
AGGCAAATTAGTATTGCAAATTTGCGGCGTTTTTTAAAAAGGCCACTAAAAATTTAATGCTTTGT
AATGAAACGACGCCGTTTG
Found at i:73348192 original size:167 final size:167
Alignment explanation
Indices: 73347892--73348370 Score: 667
Period size: 167 Copynumber: 2.9 Consensus size: 167
73347882 TTTAGGGAAG
* * *
73347892 AATTTTATTCCCTGTTCTGAAACG-TAGTCTTTTAAGGCAAATGGTATTGCAACTTTGCGGCGTT
1 AATTTAATTCCCTGTTGTGAAACGAT-GTCGTTTAAGGCAAATGGTATTGCAACTTTGCGGCGTT
* * * *
73347956 TTTTAAAAACACCACTAAAATTTTAATGCTTTGTAATGAAACAACACCGTTGGAGACAAATTAGT
65 TTTTAAAAACGCCACTAAAATTTTAATGCTTTGTAATGAAACGACGCCGTTGGAGTCAAATTAGT
* **
73348021 ATTGCAAATTTGCGGCGTTTGTGAAAAATGCCACTAAA
130 ATTGCAAATTTGCAGCGTTTGTGAAAAATGAAACTAAA
* * *
73348059 AATTTAATTCCCTATTGTGAAACGATGTCGTTTAAGGCAAATAGTATTGCAACTTTGCGGCATTT
1 AATTTAATTCCCTGTTGTGAAACGATGTCGTTTAAGGCAAATGGTATTGCAACTTTGCGGCGTTT
* * * * *
73348124 CTTAAAAATGCCACTAAAATTTTAATGCTTTGTAATGAAACGACGCCATTGGAGTCGAATTGGTA
66 TTTAAAAACGCCACTAAAATTTTAATGCTTTGTAATGAAACGACGCCGTTGGAGTCAAATTAGTA
*
73348189 TTGCAAATTTGCAGCTTTTGTGAAAAATGAAACTAAA
131 TTGCAAATTTGCAGCGTTTGTGAAAAATGAAACTAAA
* *
73348226 AATTTAGTTCCCTGTTGTGAAACGACT-T-GTTTAAGGCAAATGGTTATTGCAATTTTGCGGCGT
1 AATTTAATTCCCTGTTGTGAAACGA-TGTCGTTTAAGGCAAATGG-TATTGCAACTTTGCGGCGT
* * * *
73348289 TTTTTAAAAAGGTCACTAAAAGTTTAATGCTTTGTAATGAAACGACGCCGTTTGAGTCAAATTTA
64 TTTTTAAAAACGCCACTAAAATTTTAATGCTTTGTAATGAAACGACGCCGTTGGAGTCAAA-TTA
*
73348354 TTATTGCAAATTTGCAG
128 GTATTGCAAATTTGCAG
73348371 TTGTGTGGGA
Statistics
Matches: 275, Mismatches: 33, Indels: 7
0.87 0.10 0.02
Matches are distributed among these distances:
166 14 0.05
167 241 0.88
168 20 0.07
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (167 bp):
AATTTAATTCCCTGTTGTGAAACGATGTCGTTTAAGGCAAATGGTATTGCAACTTTGCGGCGTTT
TTTAAAAACGCCACTAAAATTTTAATGCTTTGTAATGAAACGACGCCGTTGGAGTCAAATTAGTA
TTGCAAATTTGCAGCGTTTGTGAAAAATGAAACTAAA
Found at i:73348330 original size:83 final size:83
Alignment explanation
Indices: 73347922--73348368 Score: 358
Period size: 84 Copynumber: 5.3 Consensus size: 83
73347912 AACGTAGTCT
* ** *
73347922 TTTAAGGCAAATGGTATTGCAACTTTGCGGCGTTTTTTAAAAACACCACTAAAATTTTAATGCTT
1 TTTAAGGCAAATGGTATTGCAAATTTGCGGCGTTTTTTAAAAATGCCACTAAAAATTTAATGCTT
*
73347987 TGTAATGAAACAACACCG
66 TGTAATGAAACGACACCG
** * * * * * *
73348005 TTGGAGACAAATTAGTATTGCAAATTTGCGGCGTTTGTGAAAAATGCCACTAAAAATTTAATTCC
1 TTTAAGGCAAA-TGGTATTGCAAATTTGCGGCGTTTTTTAAAAATGCCACTAAAAATTTAATGCT
* * ** ***
73348070 CTATTGTGAAACGATGTCG
65 TTGTAATGAAACGACACCG
* * * * *
73348089 TTTAAGGCAAATAGTATTGCAACTTTGCGGCATTTCTTAAAAATGCCACTAAAATTTTAATGCTT
1 TTTAAGGCAAATGGTATTGCAAATTTGCGGCGTTTTTTAAAAATGCCACTAAAAATTTAATGCTT
* *
73348154 TGTAATGAAACGACGCCA
66 TGTAATGAAACGACACCG
** * * * * ** * *
73348172 TTGGAGTCGAATTGGTATTGCAAATTTGCAGC-TTTTGTGAAAAATGAAACTAAAAATTTAGTTC
1 TTTAAGGC-AAATGGTATTGCAAATTTGCGGCGTTTT-TTAAAAATGCCACTAAAAATTTAATGC
** ** **
73348236 CCTGTTGTGAAACGAC-TTG
64 TTTGTAATGAAACGACACCG
* * * *
73348255 TTTAAGGCAAATGGTTATTGCAATTTTGCGGCGTTTTTTAAAAAGGTCACTAAAAGTTTAATGCT
1 TTTAAGGCAAATGG-TATTGCAAATTTGCGGCGTTTTTTAAAAATGCCACTAAAAATTTAATGCT
*
73348320 TTGTAATGAAACGACGCCG
65 TTGTAATGAAACGACACCG
* * **
73348339 TTTGAGTCAAATTTATTATTGCAAATTTGC
1 TTTAAGGCAAA--TGGTATTGCAAATTTGC
73348369 AGTTGTGTGG
Statistics
Matches: 274, Mismatches: 82, Indels: 14
0.74 0.22 0.04
Matches are distributed among these distances:
82 5 0.02
83 126 0.46
84 129 0.47
85 13 0.05
86 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (83 bp):
TTTAAGGCAAATGGTATTGCAAATTTGCGGCGTTTTTTAAAAATGCCACTAAAAATTTAATGCTT
TGTAATGAAACGACACCG
Found at i:73351414 original size:20 final size:18
Alignment explanation
Indices: 73351375--73351419 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
73351365 AACAAGGCAA
73351375 TAACT-ATAGAAGATAAC
1 TAACTAATAGAAGATAAC
73351392 TAACTAATAGAAGAGTGAAC
1 TAACTAATAGAAGA-T-AAC
*
73351412 TAATTAAT
1 TAACTAAT
73351420 TGGAAGTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 5 0.21
18 8 0.33
19 1 0.04
20 10 0.42
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.27
Consensus pattern (18 bp):
TAACTAATAGAAGATAAC
Found at i:73357235 original size:31 final size:29
Alignment explanation
Indices: 73357195--73357252 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 29
73357185 TTATAATACT
*
73357195 ATCATTAAATTATTCAAAAAATTTTATTTAA
1 ATCACTAAATTATT--AAAAATTTTATTTAA
*
73357226 ATCACTAAATTATTAAAATTTTTATTT
1 ATCACTAAATTATTAAAAATTTTATTT
73357253 TATAATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 12 0.48
31 13 0.52
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (29 bp):
ATCACTAAATTATTAAAAATTTTATTTAA
Found at i:73357979 original size:10 final size:9
Alignment explanation
Indices: 73357954--73358006 Score: 54
Period size: 10 Copynumber: 5.6 Consensus size: 9
73357944 TTTTAGAAAA
73357954 TTTTTAAA-
1 TTTTTAAAT
73357962 TTTTTAAAT
1 TTTTTAAAT
73357971 TTCTTTAAAT
1 TT-TTTAAAT
73357981 ATTCTTTAGAAT
1 -TT-TTTA-AAT
*
73357993 CTTTTAAAT
1 TTTTTAAAT
73358002 TTTTT
1 TTTTT
73358007 TATGTTTTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 8 0.21
9 9 0.23
10 11 0.28
11 8 0.21
12 3 0.08
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTTTAAAT
Found at i:73358053 original size:20 final size:20
Alignment explanation
Indices: 73358028--73358077 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
73358018 AAAGATATAA
73358028 ATTTTGGAATTTTT-ATAAA-T
1 ATTTT-GAATTTTTGA-AAATT
73358048 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTGAAAATT
73358068 ATTTTGAATT
1 ATTTTGAATT
73358078 ATTTTGTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 11 0.39
20 17 0.61
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (20 bp):
ATTTTGAATTTTTGAAAATT
Found at i:73358058 original size:19 final size:19
Alignment explanation
Indices: 73358023--73358077 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
73358013 TTTCTAAAGA
*
73358023 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
73358041 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
73358060 TGA-AAATTATTTTGAATT
1 T-ATAAA-TATTTTGAATT
73358078 ATTTTGTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
18 7 0.21
19 14 0.42
20 12 0.36
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:73360272 original size:23 final size:22
Alignment explanation
Indices: 73360233--73360278 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
73360223 GCTTATATCC
*
73360233 AAACCAAAACATACCAAATCAT
1 AAACCAAAACATACCAAAACAT
*
73360255 AAACCAAAGTCATACCAAAACAT
1 AAACCAAA-ACATACCAAAACAT
73360278 A
1 A
73360279 TGATTCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.59, C:0.26, G:0.02, T:0.13
Consensus pattern (22 bp):
AAACCAAAACATACCAAAACAT
Found at i:73364493 original size:18 final size:18
Alignment explanation
Indices: 73364472--73364530 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
73364462 TAAAATTCAA
73364472 TTATTCAGTAGCAATTAG
1 TTATTCAGTAGCAATTAG
* * *
73364490 TTATTCAGTAACAATCAT
1 TTATTCAGTAGCAATTAG
**
73364508 TTGCTCAGTAGCAATTAG
1 TTATTCAGTAGCAATTAG
73364526 TTATT
1 TTATT
73364531 GAAAACGATC
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (18 bp):
TTATTCAGTAGCAATTAG
Found at i:73365567 original size:18 final size:17
Alignment explanation
Indices: 73365520--73365567 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
73365510 TTCTTTCCTT
* *
73365520 CTTTTCTTTTCTGTTTT
1 CTTTTCATTTCTGTTTC
*
73365537 CGTTTCATATTCTGTTTC
1 CTTTTCAT-TTCTGTTTC
73365555 CTTTTTCATTTCT
1 C-TTTTCATTTCT
73365568 TTTATTTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 6 0.24
18 13 0.52
19 6 0.24
ACGTcount: A:0.06, C:0.21, G:0.06, T:0.67
Consensus pattern (17 bp):
CTTTTCATTTCTGTTTC
Found at i:73366022 original size:16 final size:17
Alignment explanation
Indices: 73366001--73366044 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
73365991 ATTTATTTCA
*
73366001 TAATAAAATATCAA-TT
1 TAATAAAATATCAACAT
73366017 TAATAAAA-AT-AACAT
1 TAATAAAATATCAACAT
73366032 TAAT-AAATATCAA
1 TAATAAAATATCAA
73366045 ATATAAAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
14 5 0.21
15 9 0.38
16 10 0.42
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (17 bp):
TAATAAAATATCAACAT
Found at i:73377310 original size:35 final size:35
Alignment explanation
Indices: 73377264--73377333 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
73377254 ATGACATAAA
*
73377264 AGAAAATCAACGATTTTTGAAAATCGATTCACCAC
1 AGAAAATCAACGATCTTTGAAAATCGATTCACCAC
73377299 AGAAAATCAACGATCTTTGAAAATCGATTCACCAC
1 AGAAAATCAACGATCTTTGAAAATCGATTCACCAC
73377334 CACCACGATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.24
Consensus pattern (35 bp):
AGAAAATCAACGATCTTTGAAAATCGATTCACCAC
Found at i:73382596 original size:41 final size:41
Alignment explanation
Indices: 73382539--73382619 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
73382529 CTATCTGAAA
73382539 GTTTGACGTCTTTTTTGTTTCTTGTTGCTGATAATACAGGT
1 GTTTGACGTCTTTTTTGTTTCTTGTTGCTGATAATACAGGT
73382580 GTTTGACGTCTTTTTTGTTTCTTGTTGCTGATAATACAGG
1 GTTTGACGTCTTTTTTGTTTCTTGTTGCTGATAATACAGG
73382620 ATGGTATCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.15, C:0.12, G:0.22, T:0.51
Consensus pattern (41 bp):
GTTTGACGTCTTTTTTGTTTCTTGTTGCTGATAATACAGGT
Found at i:73384879 original size:18 final size:18
Alignment explanation
Indices: 73384856--73384890 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
73384846 CCTTTAAATC
73384856 CAGGATTAGATTCTTTTG
1 CAGGATTAGATTCTTTTG
73384874 CAGGATTAGATTCTTTT
1 CAGGATTAGATTCTTTT
73384891 ATTAGCTAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.11, G:0.20, T:0.46
Consensus pattern (18 bp):
CAGGATTAGATTCTTTTG
Found at i:73387752 original size:18 final size:19
Alignment explanation
Indices: 73387718--73387760 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
73387708 TTGATTTTTT
73387718 ATTCGAGTTAATCCAAATA
1 ATTCGAGTTAATCCAAATA
73387737 ATTCGA-TTAA-CTCAAATA
1 ATTCGAGTTAATC-CAAATA
*
73387755 ACTCGA
1 ATTCGA
73387761 ACTATTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 15 0.68
19 6 0.27
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (19 bp):
ATTCGAGTTAATCCAAATA
Found at i:73394388 original size:3 final size:3
Alignment explanation
Indices: 73394380--73394414 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
73394370 TCGTGTAATT
73394380 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
73394415 TTTGTAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:73396106 original size:80 final size:81
Alignment explanation
Indices: 73395991--73396146 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 81
73395981 TTAGGGGGGC
* * *
73395991 TAAAGTGTAATTTTATTATATATTAATTTATAA-TTTCTTTATTTACAAGAGGATTGAATTGAAA
1 TAAAGTGTAATTTCA-TATATATTAATTTATAATTTTCTTTATTTACAAGAGGAGTAAATTGAAA
73396055 ACTTTTCATTTTGAAGGG
65 A-TTTTCATTTTGAAGGG
* * *
73396073 TAAAGTGTAATTTCA-CTATATTAATTTATAATTTTTTTTATTTATAAGAGGAGTAAATTGAAAA
1 TAAAGTGTAATTTCATATATATTAATTTATAATTTTCTTTATTTACAAGAGGAGTAAATTGAAAA
73396137 TTTTCATTTT
66 TTTTCATTTT
73396147 CTGGGAGGGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 25 0.37
81 28 0.42
82 14 0.21
ACGTcount: A:0.36, C:0.04, G:0.12, T:0.48
Consensus pattern (81 bp):
TAAAGTGTAATTTCATATATATTAATTTATAATTTTCTTTATTTACAAGAGGAGTAAATTGAAAA
TTTTCATTTTGAAGGG
Found at i:73396352 original size:21 final size:22
Alignment explanation
Indices: 73396317--73396357 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
73396307 CGAACTTTTC
73396317 ATATTATTATATTAT-TAAAAT
1 ATATTATTATATTATATAAAAT
73396338 ATATTATTA-ATTTATATAAA
1 ATATTATTATA-TTATATAAA
73396358 TAAATTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 13 0.72
22 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
ATATTATTATATTATATAAAAT
Found at i:73397465 original size:28 final size:28
Alignment explanation
Indices: 73397425--73397482 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
73397415 GGAGTAATGA
73397425 TGAAGATTTGCAACACAAATTTGGTTGT
1 TGAAGATTTGCAACACAAATTTGGTTGT
73397453 TGAAGATTTGCAACACAAATTTGGTTGT
1 TGAAGATTTGCAACACAAATTTGGTTGT
73397481 TG
1 TG
73397483 TAATATAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.36
Consensus pattern (28 bp):
TGAAGATTTGCAACACAAATTTGGTTGT
Found at i:73406534 original size:21 final size:19
Alignment explanation
Indices: 73406489--73406530 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
73406479 TTCAATTCAA
*
73406489 TCTCAACTCTCTCTCATAT
1 TCTCAACTCTCTCTCAAAT
* *
73406508 TATCAATTCTCTCTCAAAT
1 TCTCAACTCTCTCTCAAAT
73406527 TCTC
1 TCTC
73406531 TCAAAATTCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.24, C:0.33, G:0.00, T:0.43
Consensus pattern (19 bp):
TCTCAACTCTCTCTCAAAT
Found at i:73413174 original size:39 final size:39
Alignment explanation
Indices: 73413129--73413208 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
73413119 CTCCACACAT
73413129 TTCTAAATGTTTCCAATGTATTTGTGTTAATTTAAAGGG
1 TTCTAAATGTTTCCAATGTATTTGTGTTAATTTAAAGGG
73413168 TTCTAAATGTTTCCAATGTATTTGTGTTAATTTAAAGGG
1 TTCTAAATGTTTCCAATGTATTTGTGTTAATTTAAAGGG
73413207 TT
1 TT
73413209 ACATACATAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.47
Consensus pattern (39 bp):
TTCTAAATGTTTCCAATGTATTTGTGTTAATTTAAAGGG
Found at i:73413482 original size:27 final size:25
Alignment explanation
Indices: 73413431--73413484 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
73413421 TTCTCGACAA
73413431 TTTTGAAATTTAGTCATTGTATTTT
1 TTTTGAAATTTAGTCATTGTATTTT
* *
73413456 TTTTTAAAGTTTAGTTCATT-TACTTT
1 TTTTGAAA-TTTAG-TCATTGTATTTT
73413482 TTT
1 TTT
73413485 AGATTTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 7 0.28
26 13 0.52
27 5 0.20
ACGTcount: A:0.22, C:0.06, G:0.09, T:0.63
Consensus pattern (25 bp):
TTTTGAAATTTAGTCATTGTATTTT
Found at i:73415967 original size:119 final size:120
Alignment explanation
Indices: 73415823--73416061 Score: 462
Period size: 120 Copynumber: 2.0 Consensus size: 120
73415813 TGGAAATAGA
73415823 AATAATTAAAAGATGATAAATAATTAAAAAGAAATTAACATCTTA-TTTATGTCATCTTCTTCCC
1 AATAATTAAAAGATGATAAATAATTAAAAAGAAATTAACATCTTATTTTATGTCATCTTCTTCCC
73415887 TAAAATACATGGAAACCCTAGGAAAGAGAAAACAATCTTTCTTGTCTTAATTGGG
66 TAAAATACATGGAAACCCTAGGAAAGAGAAAACAATCTTTCTTGTCTTAATTGGG
73415942 AATAATTAAAAGATGATAAATAATTAAAAAGAAATTAACATCTTATTTTATGTCATCTTCTTCCC
1 AATAATTAAAAGATGATAAATAATTAAAAAGAAATTAACATCTTATTTTATGTCATCTTCTTCCC
*
73416007 TAAAATACATGGAAACCTTAGGAAAGAGAAAACAATCTTTCTTGTCTTAATTGGG
66 TAAAATACATGGAAACCCTAGGAAAGAGAAAACAATCTTTCTTGTCTTAATTGGG
73416062 TAAGTTTTCT
Statistics
Matches: 118, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
119 45 0.38
120 73 0.62
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.33
Consensus pattern (120 bp):
AATAATTAAAAGATGATAAATAATTAAAAAGAAATTAACATCTTATTTTATGTCATCTTCTTCCC
TAAAATACATGGAAACCCTAGGAAAGAGAAAACAATCTTTCTTGTCTTAATTGGG
Found at i:73416579 original size:90 final size:91
Alignment explanation
Indices: 73416465--73416650 Score: 347
Period size: 90 Copynumber: 2.1 Consensus size: 91
73416455 GTAATTTTAC
*
73416465 CTAGGATGTAAATTGAGTCCAAATAAATATGAAATGTGATAAATTGATGATTAAATTCATTTATA
1 CTAGAATGTAAATTGAGTCCAAATAAATATGAAATGTGATAAATTGATGATTAAATTCATTTATA
*
73416530 TAGATCTGGATAACACAAATTCGAGG
66 TAGATCCGGATAACACAAATTCGAGG
73416556 -TAGAATGTAAATTGAGTCCAAATAAATATGAAATGTGATAAATTGATGATTAAATTCATTTATA
1 CTAGAATGTAAATTGAGTCCAAATAAATATGAAATGTGATAAATTGATGATTAAATTCATTTATA
73416620 TAGATCCGGATAACACAAATTCGAGG
66 TAGATCCGGATAACACAAATTCGAGG
73416646 CTAGA
1 CTAGA
73416651 TCGAGGAAAA
Statistics
Matches: 92, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
90 88 0.96
91 4 0.04
ACGTcount: A:0.42, C:0.09, G:0.17, T:0.31
Consensus pattern (91 bp):
CTAGAATGTAAATTGAGTCCAAATAAATATGAAATGTGATAAATTGATGATTAAATTCATTTATA
TAGATCCGGATAACACAAATTCGAGG
Found at i:73416774 original size:18 final size:18
Alignment explanation
Indices: 73416751--73416813 Score: 56
Period size: 18 Copynumber: 3.3 Consensus size: 18
73416741 ATGTTAAATT
*
73416751 GAATGTTGTGTTTGTATG
1 GAATGTTGTGTTTGTATA
* *
73416769 GAATG-TGTTTTATGTTAAATT
1 GAATGTTGTGTT-TG-T--ATA
73416790 GAATGTTGTGTTTGTATA
1 GAATGTTGTGTTTGTATA
73416808 GAATGT
1 GAATGT
73416814 GTTTTATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
17 5 0.14
18 15 0.42
19 1 0.03
20 1 0.03
21 9 0.25
22 5 0.14
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (18 bp):
GAATGTTGTGTTTGTATA
Found at i:73416794 original size:21 final size:21
Alignment explanation
Indices: 73416740--73416801 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 21
73416730 AGCTTGTAAA
73416740 TATGTTAAATTGAATGTTGTGT
1 TATGTTAAATTGAATG-TGTGT
* *
73416762 T-TG-T--ATGGAATGTGTTT
1 TATGTTAAATTGAATGTGTGT
73416779 TATGTTAAATTGAATGTTGTGT
1 TATGTTAAATTGAATG-TGTGT
73416801 T
1 T
73416802 TGTATAGAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
17 5 0.16
18 9 0.29
19 1 0.03
20 1 0.03
21 9 0.29
22 6 0.19
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (21 bp):
TATGTTAAATTGAATGTGTGT
Found at i:73416794 original size:39 final size:39
Alignment explanation
Indices: 73416740--73416820 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
73416730 AGCTTGTAAA
*
73416740 TATGTTAAATTGAATGTTGTGTTTGTATGGAATGTGTTT
1 TATGTTAAATTGAATGTTGTGTTTGTATAGAATGTGTTT
73416779 TATGTTAAATTGAATGTTGTGTTTGTATAGAATGTGTTT
1 TATGTTAAATTGAATGTTGTGTTTGTATAGAATGTGTTT
73416818 TAT
1 TAT
73416821 ATTTATGTGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.52
Consensus pattern (39 bp):
TATGTTAAATTGAATGTTGTGTTTGTATAGAATGTGTTT
Found at i:73422653 original size:36 final size:36
Alignment explanation
Indices: 73422605--73422678 Score: 94
Period size: 36 Copynumber: 2.1 Consensus size: 36
73422595 TAGAGTAAGG
* ** *
73422605 TCATTTATTCAAATCAATAGTGGGCACATGGATCTA
1 TCATTTAATCAAAAAAAGAGTGGGCACATGGATCTA
* *
73422641 TCATTTAATCAAAAAAAGGGTGGGCACATGGGTCTA
1 TCATTTAATCAAAAAAAGAGTGGGCACATGGATCTA
73422677 TC
1 TC
73422679 CACTTGCAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (36 bp):
TCATTTAATCAAAAAAAGAGTGGGCACATGGATCTA
Found at i:73427834 original size:21 final size:20
Alignment explanation
Indices: 73427787--73427840 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 20
73427777 ATCATTATTT
*
73427787 CTAATCTCACCATTACAGTA
1 CTAATCTCACCGTTACAGTA
*
73427807 TTCAATCTCACCGTTACAGTAA
1 CT-AATCTCACCGTTACAGT-A
73427829 CTAATCTCACCG
1 CTAATCTCACCG
73427841 CCACCGCTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.03
21 26 0.90
22 2 0.07
ACGTcount: A:0.31, C:0.31, G:0.07, T:0.30
Consensus pattern (20 bp):
CTAATCTCACCGTTACAGTA
Found at i:73428396 original size:20 final size:20
Alignment explanation
Indices: 73428375--73428444 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
73428365 GAATTGAGTT
*
73428375 AAACAACAAAGAATCTATTT
1 AAACAACAAAGAATCTATTC
* * * *
73428395 AAGCAATAATGAATCGATTC
1 AAACAACAAAGAATCTATTC
* *
73428415 AAACAATAAACAATCTATTC
1 AAACAACAAAGAATCTATTC
73428435 AAACAACAAA
1 AAACAACAAA
73428445 AATAATCGAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.56, C:0.17, G:0.06, T:0.21
Consensus pattern (20 bp):
AAACAACAAAGAATCTATTC
Found at i:73430587 original size:47 final size:45
Alignment explanation
Indices: 73430508--73430596 Score: 110
Period size: 47 Copynumber: 1.9 Consensus size: 45
73430498 ACAATAATTC
73430508 TAAAAAAATTAAAAAATCTTTAAAATAAATATAAATTATCAAAATTAT
1 TAAAAAAATTAAAAAATCTTTAAAAT-AATAT-AATT-TCAAAATTAT
*
73430556 TAAAAATATT-AAAAATCATGTTAAAAT-ATATAATTTCAAAA
1 TAAAAAAATTAAAAAATC-T-TTAAAATAATATAATTTCAAAA
73430597 CACATGGAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
45 6 0.16
46 4 0.11
47 11 0.29
48 10 0.26
49 7 0.18
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (45 bp):
TAAAAAAATTAAAAAATCTTTAAAATAATATAATTTCAAAATTAT
Found at i:73443792 original size:14 final size:14
Alignment explanation
Indices: 73443773--73443799 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73443763 CCTTAAACAA
73443773 AAAAAATAACAATT
1 AAAAAATAACAATT
73443787 AAAAAATAACAAT
1 AAAAAATAACAAT
73443800 AAACACTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAAAATAACAATT
Found at i:73443941 original size:33 final size:34
Alignment explanation
Indices: 73443878--73443948 Score: 126
Period size: 34 Copynumber: 2.1 Consensus size: 34
73443868 CCAAACTAAA
*
73443878 CCCTAGATCTTCTTTTTTTTCTTTTCCTTTCAAG
1 CCCTAGATCTTCTTCTTTTTCTTTTCCTTTCAAG
73443912 CCCTAGATCTTCTTCTTTTT-TTTTCCTTTCAAG
1 CCCTAGATCTTCTTCTTTTTCTTTTCCTTTCAAG
73443945 CCCT
1 CCCT
73443949 CTTCTTCCTC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
33 17 0.47
34 19 0.53
ACGTcount: A:0.11, C:0.30, G:0.06, T:0.54
Consensus pattern (34 bp):
CCCTAGATCTTCTTCTTTTTCTTTTCCTTTCAAG
Found at i:73448448 original size:14 final size:14
Alignment explanation
Indices: 73448429--73448486 Score: 75
Period size: 14 Copynumber: 4.2 Consensus size: 14
73448419 TTAAAACAAT
73448429 AAAGTAAATAAAAG
1 AAAGTAAATAAAAG
73448443 AAAGTAAATAAAAG
1 AAAGTAAATAAAAG
* *
73448457 AAACTAAA-GAAAG
1 AAAGTAAATAAAAG
73448470 AAAAG-AAATAAAAG
1 -AAAGTAAATAAAAG
73448484 AAA
1 AAA
73448487 CAAAAAGAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
13 10 0.26
14 28 0.74
ACGTcount: A:0.74, C:0.02, G:0.14, T:0.10
Consensus pattern (14 bp):
AAAGTAAATAAAAG
Found at i:73448491 original size:9 final size:9
Alignment explanation
Indices: 73448452--73448491 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
73448442 GAAAGTAAAT
73448452 AAAAGAAAC
1 AAAAGAAAC
* *
73448461 TAAAGAAAG
1 AAAAGAAAC
*
73448470 AAAAGAAAT
1 AAAAGAAAC
73448479 AAAAGAAAC
1 AAAAGAAAC
73448488 AAAA
1 AAAA
73448492 AGAACAGCAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.78, C:0.05, G:0.12, T:0.05
Consensus pattern (9 bp):
AAAAGAAAC
Found at i:73448503 original size:27 final size:26
Alignment explanation
Indices: 73448439--73448490 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
73448429 AAAGTAAATA
73448439 AAAG-AAAGTAAATAAAAGAAACTAAAG
1 AAAGAAAAG-AAATAAAAGAAAC-AAAG
73448466 AAAGAAAAGAAATAAAAGAAACAAA
1 AAAGAAAAGAAATAAAAGAAACAAA
73448491 AAGAACAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 3 0.12
27 17 0.71
28 4 0.17
ACGTcount: A:0.75, C:0.04, G:0.13, T:0.08
Consensus pattern (26 bp):
AAAGAAAAGAAATAAAAGAAACAAAG
Found at i:73449394 original size:44 final size:44
Alignment explanation
Indices: 73449345--73449436 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 44
73449335 TGTTCAGGGA
73449345 TACTTCGACCTT-GAGTCGATGAGGCA-CT-ATAAGTGTCGTACTGT
1 TACTTCGA-CTTCGAGTCGATGAGGCACCTCAT--GTGTCGTACTGT
* *
73449389 TACTTCGACTTCGAGTTGATGAGGCACCTCGTGTGTCGTACTGT
1 TACTTCGACTTCGAGTCGATGAGGCACCTCATGTGTCGTACTGT
73449433 TACT
1 TACT
73449437 GTTATTTCGG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
43 3 0.07
44 37 0.86
45 2 0.05
46 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.34
Consensus pattern (44 bp):
TACTTCGACTTCGAGTCGATGAGGCACCTCATGTGTCGTACTGT
Found at i:73450818 original size:49 final size:51
Alignment explanation
Indices: 73450725--73450824 Score: 134
Period size: 49 Copynumber: 2.0 Consensus size: 51
73450715 ATCTATCTTC
*
73450725 ACGTCTCTGCCCTGCTGCTATTAATTTTTTTTCGGCAACTGCTTTGCTGCTTT
1 ACGTCTCTGCCCTGCTG--ATTAATTTTTTTTCAGCAACTGCTTTGCTGCTTT
*
73450778 ACGTCTCTGCCCTGCTG-TT-A-TTTTTTTCTAGTAACTGCTTTGCTGCT
1 ACGTCTCTGCCCTGCTGATTAATTTTTTTTC-AGCAACTGCTTTGCTGCT
73450825 GATTTGCTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
48 8 0.18
49 17 0.39
50 2 0.05
53 17 0.39
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (51 bp):
ACGTCTCTGCCCTGCTGATTAATTTTTTTTCAGCAACTGCTTTGCTGCTTT
Found at i:73455980 original size:64 final size:63
Alignment explanation
Indices: 73455909--73456063 Score: 190
Period size: 63 Copynumber: 2.5 Consensus size: 63
73455899 AAAGCAAATC
** * * * *
73455909 AGCAGCAAAGCAGTTGCTGGAAAAAAAATAACAGTAGGGCAGAGATGTGAAGTAGAGTAATTGA
1 AGCAGCAAAGCAGTTGCTGGAAAAAAAATAACAACAGAGCAGAGACGTGAAGCAGAG-AAGTGA
* *
73455973 AGCAGCAAAGTAGTTGCTGG-AAAAAAATAACAACAGAGCAGAGACGTGAAGCAGAGACGTGA
1 AGCAGCAAAGCAGTTGCTGGAAAAAAAATAACAACAGAGCAGAGACGTGAAGCAGAGAAGTGA
* *
73456035 AGCAACAAAGCAGTTGC--CAAAAAAAATAA
1 AGCAGCAAAGCAGTTGCTGGAAAAAAAATAA
73456064 TAGCAGCAGG
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
61 10 0.13
62 19 0.24
63 31 0.39
64 19 0.24
ACGTcount: A:0.47, C:0.13, G:0.26, T:0.14
Consensus pattern (63 bp):
AGCAGCAAAGCAGTTGCTGGAAAAAAAATAACAACAGAGCAGAGACGTGAAGCAGAGAAGTGA
Found at i:73456027 original size:13 final size:13
Alignment explanation
Indices: 73456009--73456038 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
73455999 ATAACAACAG
73456009 AGCAGAGACGTGA
1 AGCAGAGACGTGA
73456022 AGCAGAGACGTGA
1 AGCAGAGACGTGA
73456035 AGCA
1 AGCA
73456039 ACAAAGCAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.17, G:0.37, T:0.07
Consensus pattern (13 bp):
AGCAGAGACGTGA
Found at i:73456231 original size:24 final size:24
Alignment explanation
Indices: 73456152--73456231 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
73456142 GATTTGTGAT
* *
73456152 TAAAAAGTCTAATTAAATAAGGTG
1 TAAAAAATCTAATTAAATGAGGTG
* * *
73456176 TAAATGAGATATGTCATTAAATGATGAT-
1 TAAA--A-A-ATCTAATTAAATGA-GGTG
73456204 TAAAAAATCTAATTAAATGAGGTG
1 TAAAAAATCTAATTAAATGAGGTG
73456228 TAAA
1 TAAA
73456232 TGACATGTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 12
0.68 0.13 0.19
Matches are distributed among these distances:
23 2 0.05
24 20 0.48
25 1 0.02
26 2 0.05
27 1 0.02
28 14 0.33
29 2 0.05
ACGTcount: A:0.49, C:0.04, G:0.16, T:0.31
Consensus pattern (24 bp):
TAAAAAATCTAATTAAATGAGGTG
Found at i:73457045 original size:50 final size:50
Alignment explanation
Indices: 73456986--73457083 Score: 187
Period size: 50 Copynumber: 2.0 Consensus size: 50
73456976 TCGCCACGTC
73456986 GCAACGTTGGGAAGATTCTCATCGTGACATCGCCAACTGACTTTGATGCT
1 GCAACGTTGGGAAGATTCTCATCGTGACATCGCCAACTGACTTTGATGCT
*
73457036 GCAACGTTGGGAAGATTCTCATTGTGACATCGCCAACTGACTTTGATG
1 GCAACGTTGGGAAGATTCTCATCGTGACATCGCCAACTGACTTTGATG
73457084 TTACGATACT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (50 bp):
GCAACGTTGGGAAGATTCTCATCGTGACATCGCCAACTGACTTTGATGCT
Found at i:73476596 original size:30 final size:30
Alignment explanation
Indices: 73476538--73476599 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
73476528 GATCAATTAA
*
73476538 ATCTCCATCTAACATATTCATCAAAAAAAT
1 ATCTCCATCTAACATATTCACCAAAAAAAT
* *
73476568 ATCTCCATCTAACATCTGT-ACCACAAAAAT
1 ATCTCCATCTAACATAT-TCACCAAAAAAAT
73476598 AT
1 AT
73476600 AAAATACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.44, C:0.26, G:0.02, T:0.29
Consensus pattern (30 bp):
ATCTCCATCTAACATATTCACCAAAAAAAT
Found at i:73480497 original size:15 final size:15
Alignment explanation
Indices: 73480478--73480529 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
73480468 ATATGAACTT
*
73480478 AAAAAAATTCAAACCT
1 AAAAAAA-TCAAACCC
*
73480494 AAAAAAATCAGAACTCG
1 AAAAAAATCA-AAC-CC
*
73480511 AAAAAACTCAAACCC
1 AAAAAAATCAAACCC
73480526 AAAA
1 AAAA
73480530 TAACCCACCC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 8 0.26
16 13 0.42
17 10 0.32
ACGTcount: A:0.63, C:0.21, G:0.04, T:0.12
Consensus pattern (15 bp):
AAAAAAATCAAACCC
Found at i:73481850 original size:55 final size:55
Alignment explanation
Indices: 73481766--73481928 Score: 265
Period size: 55 Copynumber: 3.0 Consensus size: 55
73481756 ATACTTGAGG
*
73481766 AATATGAAAATATCTTGTCCAAGGCCCAACTTTTAGATAAGTTTACTAATAATCC
1 AATATGAAAATATCTTGTCCAAGGCCCAACTTTTAGATAGGTTTACTAATAATCC
* * *
73481821 AATATGAAAATACCTTGTCC-AGAGCCCAACTTTTAGATAGGTCTACTAATAATCT
1 AATATGAAAATATCTTGTCCAAG-GCCCAACTTTTAGATAGGTTTACTAATAATCC
*
73481876 AATATGAAAATATATTGTCCAAGGCCCAACTTTTAGATAGGTTTACTAATAAT
1 AATATGAAAATATCTTGTCCAAGGCCCAACTTTTAGATAGGTTTACTAATAAT
73481929 GGGCTGCCAA
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
54 2 0.02
55 95 0.96
56 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (55 bp):
AATATGAAAATATCTTGTCCAAGGCCCAACTTTTAGATAGGTTTACTAATAATCC
Found at i:73493734 original size:150 final size:150
Alignment explanation
Indices: 73493460--73493762 Score: 534
Period size: 150 Copynumber: 2.0 Consensus size: 150
73493450 ACCATGTTAA
*
73493460 ACATACTTGAATTGTTATGTAAATGTTCATGTGATGACTTTATTTGTATATGGCTTACTAAGCTT
1 ACATACTTGAATTGATATGTAAATGTTCATGTGATGACTTTATTTGTATATGGCTTACTAAGCTT
* * *
73493525 TTAAAGCTTACTTTGTGTGTTCTTTCCATGTTTTATAGATTATCAAAGCTAGCTTGGACATCAGG
66 TTAAAGCTTACTTTGTGTGTTCTTTCCATGTTTTATAGATTACCAAAGCTAGCTCGGACATCAAG
* *
73493590 GATCATCAGGAACTATCATC
131 GATCATCAGGAACCATAATC
*
73493610 ACATACTTGAATTGATATGTAAATGTTCATTTGATGACTTTATTTGTATATGGCTTACTAAGCTT
1 ACATACTTGAATTGATATGTAAATGTTCATGTGATGACTTTATTTGTATATGGCTTACTAAGCTT
73493675 TTAAAGCTTACTTTGTGTGTTCTTTCCATGTTTTATAGATTACCAAAGCTAGCTCGGACATCAAG
66 TTAAAGCTTACTTTGTGTGTTCTTTCCATGTTTTATAGATTACCAAAGCTAGCTCGGACATCAAG
*
73493740 GATCATCGGGAACCATAATC
131 GATCATCAGGAACCATAATC
73493760 ACA
1 ACA
73493763 CTATCGACTA
Statistics
Matches: 145, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
150 145 1.00
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (150 bp):
ACATACTTGAATTGATATGTAAATGTTCATGTGATGACTTTATTTGTATATGGCTTACTAAGCTT
TTAAAGCTTACTTTGTGTGTTCTTTCCATGTTTTATAGATTACCAAAGCTAGCTCGGACATCAAG
GATCATCAGGAACCATAATC
Found at i:73498452 original size:19 final size:19
Alignment explanation
Indices: 73498424--73498480 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
73498414 TGCTAAAAAG
* *
73498424 AAATAAAAATTATAATTAA
1 AAATAGAAATTAAAATTAA
*
73498443 AAATAGAAA-TAAGAAATAA
1 AAATAGAAATTAA-AATTAA
*
73498462 AAAGAGAAAATTAAAATTA
1 AAATAG-AAATTAAAATTA
73498481 TCAACATCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
18 2 0.07
19 18 0.60
20 7 0.23
21 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (19 bp):
AAATAGAAATTAAAATTAA
Found at i:73502309 original size:14 final size:15
Alignment explanation
Indices: 73502276--73502315 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
73502266 TTTACATTTG
*
73502276 AATTATATTTTATTT
1 AATTATATTTTATAT
*
73502291 CATTAT-TTTTATAT
1 AATTATATTTTATAT
73502305 AATTATATTTT
1 AATTATATTTT
73502316 TAATTTAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
AATTATATTTTATAT
Found at i:73504433 original size:22 final size:24
Alignment explanation
Indices: 73504351--73504433 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 24
73504341 TAGTATTAGA
73504351 AATAATATAGTATAAAGATATATA-ACT
1 AATAATATA-TAT-AA-ATATATACA-T
*
73504378 GATAATAT-TA-AAATATATACAT
1 AATAATATATATAAATATATACAT
* *
73504400 AATATTATATATAAAT-TATTCAT
1 AATAATATATATAAATATATACAT
73504423 -ATAATATATAT
1 AATAATATATAT
73504434 TTAAAAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
22 24 0.50
23 11 0.23
24 4 0.08
25 2 0.04
27 7 0.15
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.40
Consensus pattern (24 bp):
AATAATATATATAAATATATACAT
Found at i:73504631 original size:3 final size:3
Alignment explanation
Indices: 73504598--73504645 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
73504588 TATATACATC
* ** *
73504598 TAA TAA GAA TATA TAA TAA TGT TAA TGA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
73504644 TA
1 TA
73504646 TTGAAATACA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:73504752 original size:3 final size:3
Alignment explanation
Indices: 73504744--73504768 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
73504734 ACTAATGTAC
73504744 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
73504769 TTGAAATACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:73504757 original size:123 final size:122
Alignment explanation
Indices: 73504540--73504781 Score: 321
Period size: 123 Copynumber: 2.0 Consensus size: 122
73504530 AAAAAGTAAA
* *
73504540 TATAATAAAATGATATTAAAATAAAGTCATTAAAAACAGTAATATATATATATACATCTAATAAG
1 TATAATAAAA-GATATTAAAATAAAGTCAATAAAAACAGTAACATATATATATACATC-AATAAG
* * *
73504605 AATATATAATAATGTTAATGATAATAATAATAATAATAATATTGAAATACAAAAGCTAT
64 AATATACAATAATGTCAATAATAATAATAATAATAATAATATTGAAATACAAAAGCTAT
* *
73504664 TATAATAAAA-ATATTAAAATAAAGT-AATAAAAATATTACTACATATATATATACAT-ACATGA
1 TATAATAAAAGATATTAAAATAAAGTCAATAAAAACAGTA--ACATATATATATACATCA-AT-A
*
73504726 AG-ATATACACTAATGTACAATAATAATAATAATAATAATAATATTGAAATACAAAA
62 AGAATATACAATAATGT-CAATAATAATAATAATAATAATAATATTGAAATACAAAA
73504782 AAATGTAATA
Statistics
Matches: 105, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
121 11 0.10
122 29 0.28
123 55 0.52
124 10 0.10
ACGTcount: A:0.57, C:0.06, G:0.05, T:0.32
Consensus pattern (122 bp):
TATAATAAAAGATATTAAAATAAAGTCAATAAAAACAGTAACATATATATATACATCAATAAGAA
TATACAATAATGTCAATAATAATAATAATAATAATAATATTGAAATACAAAAGCTAT
Found at i:73505291 original size:11 final size:11
Alignment explanation
Indices: 73505250--73505282 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
73505240 GAAAAAAAAA
73505250 AGAG-AGGGAAG
1 AGAGAAGGG-AG
73505261 AGAGAAGGGAG
1 AGAGAAGGGAG
73505272 AGAGAAGGGAG
1 AGAGAAGGGAG
73505283 GGGGAAGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (11 bp):
AGAGAAGGGAG
Found at i:73505453 original size:12 final size:12
Alignment explanation
Indices: 73505432--73505469 Score: 62
Period size: 11 Copynumber: 3.3 Consensus size: 12
73505422 TTCGAATAGG
73505432 AAAAAG-GAAGA
1 AAAAAGAGAAGA
73505443 AAAAAGAGAAGA
1 AAAAAGAGAAGA
73505455 AAAAAGA-AAGA
1 AAAAAGAGAAGA
73505466 AAAA
1 AAAA
73505470 TCGATTCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 14 0.54
12 12 0.46
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAGA
Found at i:73506743 original size:10 final size:10
Alignment explanation
Indices: 73506722--73506760 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
73506712 TTTTTGGTAC
73506722 AAAATTATTTA
1 AAAATTA-TTA
73506733 AAAATTATTA
1 AAAATTATTA
* *
73506743 ATAATTATAA
1 AAAATTATTA
73506753 AAAATTAT
1 AAAATTAT
73506761 AAGAAATATC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 18 0.72
11 7 0.28
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
AAAATTATTA
Found at i:73509292 original size:12 final size:12
Alignment explanation
Indices: 73509275--73509300 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73509265 GTCGCTACCT
73509275 CAAATTAACAAG
1 CAAATTAACAAG
73509287 CAAATTAACAAG
1 CAAATTAACAAG
73509299 CA
1 CA
73509301 TTAGCAAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.19, G:0.08, T:0.15
Consensus pattern (12 bp):
CAAATTAACAAG
Found at i:73509530 original size:14 final size:14
Alignment explanation
Indices: 73509511--73509540 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
73509501 TAAACCAATT
73509511 AACCAAACTCGCAC
1 AACCAAACTCGCAC
73509525 AACCAAACTCGCAC
1 AACCAAACTCGCAC
73509539 AA
1 AA
73509541 TGGTCTCGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.40, G:0.07, T:0.07
Consensus pattern (14 bp):
AACCAAACTCGCAC
Found at i:73515627 original size:61 final size:60
Alignment explanation
Indices: 73515535--73515658 Score: 155
Period size: 61 Copynumber: 2.0 Consensus size: 60
73515525 GTTATATAAA
* *
73515535 TATGAAAAGTTATAAAATAGTCACCCTACTATTAGTAATTTTCT-TTTTTTGGTCACTTAAC
1 TATGAAAAGTTATAAAATAGTCACCCTACTATT--TAATTTTATCTTTTTTGGTCACTCAAC
* *
73515596 TATGAAATGTTATAAAAT-GATCA-CTTAACTATTTAATTTTATCTTTTTTGGTCACTCAAC
1 TATGAAAAGTTATAAAATAG-TCACCCT-ACTATTTAATTTTATCTTTTTTGGTCACTCAAC
73515656 TAT
1 TAT
73515659 TGTAGATTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
59 8 0.14
60 22 0.39
61 26 0.46
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (60 bp):
TATGAAAAGTTATAAAATAGTCACCCTACTATTTAATTTTATCTTTTTTGGTCACTCAAC
Found at i:73537510 original size:38 final size:38
Alignment explanation
Indices: 73537467--73537542 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
73537457 AATATTACTC
73537467 TCTTCACATATTATTTCAAAATAACTCTTTTACTGCTG
1 TCTTCACATATTATTTCAAAATAACTCTTTTACTGCTG
73537505 TCTTCACATATTATTTCAAAATAACTCTTTTACTGCTG
1 TCTTCACATATTATTTCAAAATAACTCTTTTACTGCTG
73537543 AATAAGAATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.29, C:0.21, G:0.05, T:0.45
Consensus pattern (38 bp):
TCTTCACATATTATTTCAAAATAACTCTTTTACTGCTG
Found at i:73539197 original size:24 final size:24
Alignment explanation
Indices: 73539148--73539197 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
73539138 TTAAATGTTA
* * *
73539148 AATAAGATACTATCTTTTTCCTGT
1 AATAAGATACTATATGTTTACTGT
73539172 AATAAGATACT-TATGTTTACTAGT
1 AATAAGATACTATATGTTTACT-GT
73539196 AA
1 AA
73539198 CAAAGAGTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (24 bp):
AATAAGATACTATATGTTTACTGT
Found at i:73539910 original size:38 final size:38
Alignment explanation
Indices: 73539854--73539935 Score: 146
Period size: 38 Copynumber: 2.2 Consensus size: 38
73539844 CTTAGAAGAT
*
73539854 TTTTGATATGGTTCAGTATTATTATTTTAACAACTTAC
1 TTTTCATATGGTTCAGTATTATTATTTTAACAACTTAC
*
73539892 TTTTCATATGGTTCAGTATTGTTATTTTAACAACTTAC
1 TTTTCATATGGTTCAGTATTATTATTTTAACAACTTAC
73539930 TTTTCA
1 TTTTCA
73539936 ATCTTGTCTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (38 bp):
TTTTCATATGGTTCAGTATTATTATTTTAACAACTTAC
Found at i:73548856 original size:37 final size:38
Alignment explanation
Indices: 73548815--73548892 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 38
73548805 TAAAGGGTCA
*
73548815 TTTGAGGATTATATATTTT-CATCCATATTCAAATATG
1 TTTGAGGATTATATATTTTACACCCATATTCAAATATG
* *
73548852 TTTGAGGGTTATATATTTTGACACCCATATTTAAATATG
1 TTTGAGGATTATATATTTT-ACACCCATATTCAAATATG
73548891 TT
1 TT
73548893 CAAGTGTACT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 18 0.50
39 18 0.50
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (38 bp):
TTTGAGGATTATATATTTTACACCCATATTCAAATATG
Found at i:73550029 original size:28 final size:27
Alignment explanation
Indices: 73549989--73550042 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
73549979 TTATTTTCGA
*
73549989 GGCCCCCAGTGTTTGACTGTCGGAGAT
1 GGCCCCCACTGTTTGACTGTCGGAGAT
* *
73550016 GGCCTCCCACTGTTTGATTGTTGGAGA
1 GGCC-CCCACTGTTTGACTGTCGGAGA
73550043 AGACATGAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.15, C:0.24, G:0.31, T:0.30
Consensus pattern (27 bp):
GGCCCCCACTGTTTGACTGTCGGAGAT
Found at i:73550717 original size:51 final size:53
Alignment explanation
Indices: 73550621--73550723 Score: 165
Period size: 51 Copynumber: 1.9 Consensus size: 53
73550611 TAGTACGTAC
73550621 ATTATAAAGTAATAACACAAAAGATTAATATTTTTCCAATTTATTTAAAGATATG
1 ATTATAAAGTAATAACACAAAAG--TAATATTTTTCCAATTTATTTAAAGATATG
*
73550676 ATTA-AAAGTAATAACACAAAAG-AATATTTTTCTAATTTATTTAAAGAT
1 ATTATAAAGTAATAACACAAAAGTAATATTTTTCCAATTTATTTAAAGAT
73550724 TATATGATTA
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
51 25 0.53
54 18 0.38
55 4 0.09
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.38
Consensus pattern (53 bp):
ATTATAAAGTAATAACACAAAAGTAATATTTTTCCAATTTATTTAAAGATATG
Found at i:73551566 original size:31 final size:31
Alignment explanation
Indices: 73551526--73551584 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
73551516 GTGTAATTCA
* *
73551526 TATTTGAGTTAAACCGAAAAACTTAATTTTT
1 TATTCGAGTTAAACCGAAAAACTAAATTTTT
* *
73551557 TATTCGAGTTGATCCGAAAAACTAAATT
1 TATTCGAGTTAAACCGAAAAACTAAATT
73551585 AACTAAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (31 bp):
TATTCGAGTTAAACCGAAAAACTAAATTTTT
Found at i:73556780 original size:55 final size:54
Alignment explanation
Indices: 73556693--73556947 Score: 233
Period size: 55 Copynumber: 4.8 Consensus size: 54
73556683 ATTAAGGTTT
* * *
73556693 AAGGATGCCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGATTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG-TTTCTAAGGC
* * ** * *
73556748 AAGGAAATCATGTAAGACCATGTTAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
73556803 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* * *
73556856 AAGGCTACCATGTAAGACCATGTCAAGACACGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
73556905 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
73556948 GTACCCGTGT
Statistics
Matches: 165, Mismatches: 28, Indels: 20
0.77 0.13 0.09
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 39 0.24
54 13 0.08
55 64 0.39
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:73556899 original size:108 final size:109
Alignment explanation
Indices: 73556703--73556900 Score: 292
Period size: 108 Copynumber: 1.8 Consensus size: 109
73556693 AAGGATGCCG
* *
73556703 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGATTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGT-AGAGTTCTAAGGCAAGGAAACCATGTAAGACCA
* * *
73556768 TGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
65 TGTCAAGACACGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
**
73556813 TGTAAGACCATGCCAAGGCATGGC-ATTGGT-GAGTTCATAAGGCAAGGCTACCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAGAGTTC-TAAGGCAAGGAAACCATGTAAGACCA
*
73556876 TGTCAAGACACGGCAATGGTAAGTT
65 TGTCAAGACACGGCAATGATAAGTT
73556901 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 5 0.06
108 44 0.56
109 6 0.08
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (109 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAGAGTTCTAAGGCAAGGAAACCATGTAAGACCAT
GTCAAGACACGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:73557160 original size:16 final size:16
Alignment explanation
Indices: 73557139--73557169 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73557129 ATAAATTTGA
73557139 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
73557155 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
73557170 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:73560686 original size:31 final size:31
Alignment explanation
Indices: 73560647--73560726 Score: 110
Period size: 31 Copynumber: 2.5 Consensus size: 31
73560637 AAGTCTCATA
73560647 AATT-TATATATTATATAAAACCATAACCAT-
1 AATTATATATATTATATAAAACCA-AACCATG
*
73560677 AATTATATATATTATATACAACCAAACCATG
1 AATTATATATATTATATAAAACCAAACCATG
73560708 AATATATATTATATTATAT
1 AAT-TATA-TATATTATAT
73560727 TATATTATAT
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
30 10 0.22
31 21 0.47
32 4 0.09
33 10 0.22
ACGTcount: A:0.49, C:0.11, G:0.01, T:0.39
Consensus pattern (31 bp):
AATTATATATATTATATAAAACCAAACCATG
Found at i:73560720 original size:5 final size:5
Alignment explanation
Indices: 73560712--73560740 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
73560702 ACCATGAATA
73560712 TATAT TATAT TATAT TATAT TATA- TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT
73560741 AACACCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:73560740 original size:47 final size:49
Alignment explanation
Indices: 73560678--73560770 Score: 131
Period size: 49 Copynumber: 1.9 Consensus size: 49
73560668 CATAACCATA
73560678 ATTATATATATTATAT-ACAACC-AAA-CCATGAATATATATTATATTAT
1 ATTATATATATTATATAAC-ACCAAAATCCATGAATATATATTATATTAT
*
73560725 ATTATAT-TATATATATAACACCAAAATCCATTAATATATATTATAT
1 ATTATATATAT-TATATAACACCAAAATCCATGAATATATATTATAT
73560771 AAAATAAAGC
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
46 3 0.07
47 15 0.37
48 5 0.12
49 18 0.44
ACGTcount: A:0.47, C:0.11, G:0.01, T:0.41
Consensus pattern (49 bp):
ATTATATATATTATATAACACCAAAATCCATGAATATATATTATATTAT
Found at i:73560851 original size:33 final size:32
Alignment explanation
Indices: 73560781--73560863 Score: 80
Period size: 31 Copynumber: 2.6 Consensus size: 32
73560771 AAAATAAAGC
* *
73560781 CATGCATATATA-ATATATGTATAACCACCCA
1 CATGTATATATATATATATGTACAACCACCCA
* *
73560812 CGTGTATATATATATATAT-TACAACCCCACTCA
1 CATGTATATATATATATATGTACAA--CCACCCA
*
73560845 CATGTATATTATTTATATA
1 CATGTATA-TATATATATA
73560864 ACACCAAAGA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
31 14 0.33
32 6 0.14
33 13 0.31
34 9 0.21
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.36
Consensus pattern (32 bp):
CATGTATATATATATATATGTACAACCACCCA
Found at i:73562979 original size:35 final size:35
Alignment explanation
Indices: 73562932--73563030 Score: 103
Period size: 35 Copynumber: 2.8 Consensus size: 35
73562922 TATATCTGAG
* *
73562932 TATACAATTTCAATATAAGTTCACATGTAATCGAA
1 TATACAAATTCAATATAAGTTCACATGTAACCGAA
** * *
73562967 TACTA-AAATTCAATATAACCTCACATGCAGCCGAA
1 TA-TACAAATTCAATATAAGTTCACATGTAACCGAA
*
73563002 TATACAAGTTCAATATAAGCTT-ACATGTA
1 TATACAAATTCAATATAAG-TTCACATGTA
73563031 CTTACCTATG
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
34 2 0.04
35 46 0.90
36 3 0.06
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.30
Consensus pattern (35 bp):
TATACAAATTCAATATAAGTTCACATGTAACCGAA
Found at i:73570727 original size:20 final size:21
Alignment explanation
Indices: 73570683--73570727 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
73570673 TTCTTTATTT
* *
73570683 ATTTT-TGTTTATTTTCTTTT
1 ATTTTGTGTTTATTATCTTTG
73570703 A-TTTGTGTTTATTAT-TTTG
1 ATTTTGTGTTTATTATCTTTG
73570722 ATTTTG
1 ATTTTG
73570728 AGTTGGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.13, C:0.02, G:0.11, T:0.73
Consensus pattern (21 bp):
ATTTTGTGTTTATTATCTTTG
Found at i:73572271 original size:6 final size:6
Alignment explanation
Indices: 73572258--73572309 Score: 50
Period size: 6 Copynumber: 8.0 Consensus size: 6
73572248 AGTCCATTTA
* *
73572258 ATTTATT ATTATTA ATTTTT ATTTTT ATTTTT ATTTTCT TTTATTT ATTTTT
1 ATTT-TT ATT-TTT ATTTTT ATTTTT ATTTTT ATTTT-T ATT-TTT ATTTTT
73572310 GAAGGCTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
6 22 0.58
7 13 0.34
8 3 0.08
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:73580392 original size:33 final size:33
Alignment explanation
Indices: 73580355--73580420 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
73580345 AAAAGTTGGA
73580355 TGATTTTCCTACTGCTGCTAGAAAGTATCCTGG
1 TGATTTTCCTACTGCTGCTAGAAAGTATCCTGG
*
73580388 TGATTTTCCTACTTCTGCTAGAAAGTATCCTGG
1 TGATTTTCCTACTGCTGCTAGAAAGTATCCTGG
73580421 AAAGAATGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (33 bp):
TGATTTTCCTACTGCTGCTAGAAAGTATCCTGG
Found at i:73580977 original size:10 final size:10
Alignment explanation
Indices: 73580962--73580995 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
73580952 ATAGTTATAA
73580962 ATATGTACAT
1 ATATGTACAT
73580972 ATATGTACAT
1 ATATGTACAT
*
73580982 ATATTTACAT
1 ATATGTACAT
73580992 ATAT
1 ATAT
73580996 ATCATCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (10 bp):
ATATGTACAT
Found at i:73581059 original size:14 final size:14
Alignment explanation
Indices: 73581040--73581072 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
73581030 CAAACTTGAT
*
73581040 ACATACATACACAC
1 ACATACACACACAC
73581054 ACATACACACACAC
1 ACATACACACACAC
73581068 ACATA
1 ACATA
73581073 TATATAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.36, G:0.00, T:0.12
Consensus pattern (14 bp):
ACATACACACACAC
Found at i:73585719 original size:41 final size:41
Alignment explanation
Indices: 73585670--73585750 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
73585660 AAAACATATT
73585670 ACTGCATGATTAATTGAGAATAATACCTTACAAATATTGGC
1 ACTGCATGATTAATTGAGAATAATACCTTACAAATATTGGC
*
73585711 ACTGCATGATTAATTGAGAATAATACCTTACAAATTTTGG
1 ACTGCATGATTAATTGAGAATAATACCTTACAAATATTGG
73585751 TTCAAACTCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (41 bp):
ACTGCATGATTAATTGAGAATAATACCTTACAAATATTGGC
Found at i:73586356 original size:46 final size:46
Alignment explanation
Indices: 73586303--73586395 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
73586293 AGCTTGAAAA
*
73586303 TATACTTGAATTTTCCTATCAATTGATTAGAAAATCAATTTATTCT
1 TATACTTGAATTTGCCTATCAATTGATTAGAAAATCAATTTATTCT
73586349 TATACTTGAATTTGCCTATCAATTGATTAGAAAATCAATTTATTCT
1 TATACTTGAATTTGCCTATCAATTGATTAGAAAATCAATTTATTCT
73586395 T
1 T
73586396 CTTTCTTATT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (46 bp):
TATACTTGAATTTGCCTATCAATTGATTAGAAAATCAATTTATTCT
Found at i:73588230 original size:22 final size:21
Alignment explanation
Indices: 73588203--73588257 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 21
73588193 CACATGGGTA
73588203 TAACAATGAAAGACACAT-GATC
1 TAACAATGAAA-ACA-ATAGATC
73588225 TAACAATGACGAAACAATAGATC
1 TAACAATGA--AAACAATAGATC
73588248 -AACAATGAAA
1 TAACAATGAAA
73588258 TGGCGAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
20 2 0.07
22 19 0.63
23 7 0.23
24 2 0.07
ACGTcount: A:0.55, C:0.16, G:0.13, T:0.16
Consensus pattern (21 bp):
TAACAATGAAAACAATAGATC
Found at i:73594809 original size:12 final size:13
Alignment explanation
Indices: 73594792--73594828 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
73594782 GAACCGGACA
73594792 CGAACCGAA-CTC
1 CGAACCGAAGCTC
73594804 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
73594816 CGAACCGTAGCTC
1 CGAACCGAAGCTC
73594829 TGATACCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:73596375 original size:16 final size:16
Alignment explanation
Indices: 73596354--73596387 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
73596344 TTCATGGATG
73596354 AACAATAAAAATTAAA
1 AACAATAAAAATTAAA
73596370 AACAATAAAAATTAAA
1 AACAATAAAAATTAAA
73596386 AA
1 AA
73596388 GAAAAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (16 bp):
AACAATAAAAATTAAA
Found at i:73599410 original size:31 final size:31
Alignment explanation
Indices: 73599365--73599431 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
73599355 CGCAAAGCAA
* * *
73599365 AATGAAAGGAAATGTTGCACATTGGTTGTCT
1 AATGTAAGCAAATGTTGCACATTGGTTATCT
*
73599396 AATGTAAGCAAATGTTGCTCATTGGTTATCT
1 AATGTAAGCAAATGTTGCACATTGGTTATCT
73599427 AATGT
1 AATGT
73599432 TTAACTAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.36
Consensus pattern (31 bp):
AATGTAAGCAAATGTTGCACATTGGTTATCT
Found at i:73604036 original size:24 final size:25
Alignment explanation
Indices: 73604008--73604058 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
73603998 AACAATATAT
73604008 ATAA-TAAA-ATAGCACATAAAAGAA
1 ATAATTAAACATAGCACATAAAA-AA
*
73604032 ATAATTAAACATAGCATATAAAAAA
1 ATAATTAAACATAGCACATAAAAAA
73604057 AT
1 AT
73604059 GAAACTATGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 4 0.17
25 8 0.33
26 12 0.50
ACGTcount: A:0.65, C:0.08, G:0.06, T:0.22
Consensus pattern (25 bp):
ATAATTAAACATAGCACATAAAAAA
Found at i:73604581 original size:22 final size:21
Alignment explanation
Indices: 73604551--73604597 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
73604541 TACAAATTAA
73604551 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
73604573 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
73604594 ATCT
1 ATCT
73604598 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:73604591 original size:16 final size:16
Alignment explanation
Indices: 73604570--73604620 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
73604560 ATTACAAGAT
73604570 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
73604586 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
73604605 CATATGCTTAAAGATT
1 CATAT-CTTCAAGATT
73604621 ATATTTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:73604603 original size:19 final size:21
Alignment explanation
Indices: 73604568--73604609 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 21
73604558 AGATTACAAG
73604568 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
73604589 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
73604608 AT
1 AT
73604610 GCTTAAAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.57
20 1 0.05
21 8 0.38
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.38
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:73612962 original size:21 final size:21
Alignment explanation
Indices: 73612938--73612998 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
73612928 TTGAAAATTG
73612938 TAATTAGATTATATAATTAGA
1 TAATTAGATTATATAATTAGA
* *
73612959 TAATTAG-TAAT-TAATTAAA
1 TAATTAGATTATATAATTAGA
* *
73612978 TAA-AATATTATAATAATTAGA
1 TAATTAGATTAT-ATAATTAGA
73612999 ATTAATAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
18 1 0.03
19 13 0.42
20 3 0.10
21 14 0.45
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (21 bp):
TAATTAGATTATATAATTAGA
Found at i:73614737 original size:17 final size:18
Alignment explanation
Indices: 73614702--73614739 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
73614692 TGCGAGCCAA
* *
73614702 TTATATTTGTGTACTATG
1 TTATATTTGTGAACCATG
73614720 TTATA-TTGTGAACCATG
1 TTATATTTGTGAACCATG
73614737 TTA
1 TTA
73614740 ACTTGGTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.26, C:0.08, G:0.16, T:0.50
Consensus pattern (18 bp):
TTATATTTGTGAACCATG
Found at i:73614775 original size:36 final size:36
Alignment explanation
Indices: 73614735--73614817 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 36
73614725 TTGTGAACCA
* *
73614735 TGTTAACTTGGTGAAT-TATATTATTATAGCGAACTG
1 TGTTAACTTGCTG-ATCTATATTAATATAGCGAACTG
* * *
73614771 TGTTAATTTGCTGATCTGTATTAATATGGCGAACTG
1 TGTTAACTTGCTGATCTATATTAATATAGCGAACTG
* *
73614807 TATTAATTTGC
1 TGTTAACTTGC
73614818 CAAACTGTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
35 2 0.05
36 38 0.95
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (36 bp):
TGTTAACTTGCTGATCTATATTAATATAGCGAACTG
Found at i:73614794 original size:18 final size:17
Alignment explanation
Indices: 73614763--73614827 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 17
73614753 TATTATTATA
*
73614763 GCGAACTGTGTTAATTT
1 GCGAACTGTATTAATTT
* *
73614780 GCTGATCTGTATTAATATG
1 GC-GAACTGTATTAAT-TT
73614799 GCGAACTGTATTAATTT
1 GCGAACTGTATTAATTT
*
73614816 GCCAAACTGTAT
1 G-CGAACTGTAT
73614828 ATTGTGAGAT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
17 4 0.10
18 32 0.82
19 3 0.08
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (17 bp):
GCGAACTGTATTAATTT
Found at i:73614826 original size:36 final size:36
Alignment explanation
Indices: 73614753--73614827 Score: 96
Period size: 36 Copynumber: 2.1 Consensus size: 36
73614743 TGGTGAATTA
* * ** *
73614753 TATTATTATAGCGAACTGTGTTAATTTGCTGATCTG
1 TATTAATATAGCGAACTGTATTAATTTGCCAAACTG
*
73614789 TATTAATATGGCGAACTGTATTAATTTGCCAAACTG
1 TATTAATATAGCGAACTGTATTAATTTGCCAAACTG
73614825 TAT
1 TAT
73614828 ATTGTGAGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.41
Consensus pattern (36 bp):
TATTAATATAGCGAACTGTATTAATTTGCCAAACTG
Found at i:73622713 original size:30 final size:30
Alignment explanation
Indices: 73622677--73622735 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
73622667 CAGGTTAAAA
73622677 TACGGGTGTAGGTAAAAAATGCAAAACAGT
1 TACGGGTGTAGGTAAAAAATGCAAAACAGT
*
73622707 TACGGGTGTAGGTCAAAAATGCAAAACAG
1 TACGGGTGTAGGTAAAAAATGCAAAACAG
73622736 CAAGGTGGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.42, C:0.12, G:0.27, T:0.19
Consensus pattern (30 bp):
TACGGGTGTAGGTAAAAAATGCAAAACAGT
Found at i:73628424 original size:14 final size:14
Alignment explanation
Indices: 73628405--73628436 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
73628395 ATCAAAACAC
73628405 ATAAATATAATACA
1 ATAAATATAATACA
*
73628419 ATAAATATAGTACA
1 ATAAATATAATACA
73628433 ATAA
1 ATAA
73628437 TATCATTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.28
Consensus pattern (14 bp):
ATAAATATAATACA
Done.