Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 223 of 343
Found at i:73628711 original size:18 final size:18
Alignment explanation
Indices: 73628676--73628711 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
73628666 TAAGGGTCAA
*
73628676 GTCCCATCACCCAGCAAC
1 GTCCCATCACCCAACAAC
*
73628694 GTCCCATCATCCAACAAC
1 GTCCCATCACCCAACAAC
73628712 ATCAGGAGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.47, G:0.08, T:0.14
Consensus pattern (18 bp):
GTCCCATCACCCAACAAC
Found at i:73629247 original size:13 final size:13
Alignment explanation
Indices: 73629243--73629289 Score: 69
Period size: 13 Copynumber: 3.6 Consensus size: 13
73629233 TTATTTTATT
73629243 TTATTTAGTTTTA
1 TTATTTAGTTTTA
*
73629256 TTATTTATTTTTA
1 TTATTTAGTTTTA
73629269 TTATTTA-TTTTA
1 TTATTTAGTTTTA
73629281 TTAATTTAG
1 TT-ATTTAG
73629290 CTTTGGCCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
12 7 0.23
13 24 0.77
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (13 bp):
TTATTTAGTTTTA
Found at i:73629281 original size:9 final size:9
Alignment explanation
Indices: 73629237--73629287 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
73629227 AAGATATTAT
73629237 TTTATTTTA
1 TTTATTTTA
73629246 TTTAGTTTTA
1 TTTA-TTTTA
73629256 -TTA-TTTA
1 TTTATTTTA
73629263 TTT-TTATTA
1 TTTATT-TTA
73629272 TTTATTTTA
1 TTTATTTTA
*
73629281 TTAATTT
1 TTTATTT
73629288 AGCTTTGGCC
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
7 4 0.11
8 3 0.08
9 22 0.61
10 7 0.19
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (9 bp):
TTTATTTTA
Found at i:73630886 original size:13 final size:13
Alignment explanation
Indices: 73630870--73630921 Score: 70
Period size: 13 Copynumber: 4.0 Consensus size: 13
73630860 TTATTTTATT
73630870 TTATTTAGTTTTA
1 TTATTTAGTTTTA
*
73630883 TTATTTATTTTTA
1 TTATTTAGTTTTA
73630896 TTATTTA-TTTTA
1 TTATTTAGTTTTA
*
73630908 TTAATTTAGCTTTA
1 TT-ATTTAGTTTTA
73630922 GCCTATTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
12 7 0.20
13 24 0.69
14 4 0.11
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (13 bp):
TTATTTAGTTTTA
Found at i:73630908 original size:9 final size:9
Alignment explanation
Indices: 73630864--73630914 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
73630854 AAGATATTAT
73630864 TTTATTTTA
1 TTTATTTTA
73630873 TTTAGTTTTA
1 TTTA-TTTTA
73630883 -TTA-TTTA
1 TTTATTTTA
73630890 TTT-TTATTA
1 TTTATT-TTA
73630899 TTTATTTTA
1 TTTATTTTA
*
73630908 TTAATTT
1 TTTATTT
73630915 AGCTTTAGCC
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
7 4 0.11
8 3 0.08
9 22 0.61
10 7 0.19
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (9 bp):
TTTATTTTA
Found at i:73637426 original size:22 final size:22
Alignment explanation
Indices: 73637408--73637450 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
73637398 TGGTATTCTT
73637408 TTGC-AGCTATTTTATTATTATA
1 TTGCTAGC-ATTTTATTATTATA
*
73637430 TTGCTATCATTTTATTATTAT
1 TTGCTAGCATTTTATTATTAT
73637451 TTAGATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.26, C:0.09, G:0.07, T:0.58
Consensus pattern (22 bp):
TTGCTAGCATTTTATTATTATA
Found at i:73637486 original size:18 final size:18
Alignment explanation
Indices: 73637456--73637500 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
73637446 ATTATTTAGA
*
73637456 TATTATATAATTTTATTAT
1 TATTAT-TAATTTTATTAC
*
73637475 TATTATTAATTTTGTTAC
1 TATTATTAATTTTATTAC
73637493 TATT-TTAA
1 TATTATTAA
73637501 AGGTATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 14 0.58
19 6 0.25
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (18 bp):
TATTATTAATTTTATTAC
Found at i:73652820 original size:23 final size:23
Alignment explanation
Indices: 73652773--73652840 Score: 82
Period size: 24 Copynumber: 2.9 Consensus size: 23
73652763 AAAAAGATTT
*
73652773 TTATACTAATAAATTTCAAATATA
1 TTATACTAATAAATCT-AAATATA
* *
73652797 TTTTGCTAATAAATCTAAATATA
1 TTATACTAATAAATCTAAATATA
*
73652820 TTATACTAAAAAATACTAAAT
1 TTATACTAATAAAT-CTAAAT
73652841 CTTCTAGAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
23 18 0.49
24 19 0.51
ACGTcount: A:0.50, C:0.09, G:0.01, T:0.40
Consensus pattern (23 bp):
TTATACTAATAAATCTAAATATA
Found at i:73654611 original size:23 final size:23
Alignment explanation
Indices: 73654566--73654611 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
73654556 TTATCAACAA
* * * *
73654566 CTGAAAATCACATAATGAGTAAG
1 CTGAAAATAAAATAATAAATAAG
73654589 CTGAAAATAAAATAATAAATAAG
1 CTGAAAATAAAATAATAAATAAG
73654612 AAAGAAGAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.57, C:0.09, G:0.13, T:0.22
Consensus pattern (23 bp):
CTGAAAATAAAATAATAAATAAG
Found at i:73654624 original size:21 final size:20
Alignment explanation
Indices: 73654598--73654645 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
73654588 GCTGAAAATA
*
73654598 AAATAATAAATAAGAA-AGAAG
1 AAATAAGAAATAA-AATA-AAG
73654619 AAATAAAGAAATAAAATAAAG
1 AAAT-AAGAAATAAAATAAAG
73654640 AAATAA
1 AAATAA
73654646 AGAATGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 2 0.08
21 13 0.54
22 9 0.38
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (20 bp):
AAATAAGAAATAAAATAAAG
Found at i:73654637 original size:13 final size:13
Alignment explanation
Indices: 73654619--73654646 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
73654609 AAGAAAGAAG
73654619 AAATAAAGAAATA
1 AAATAAAGAAATA
73654632 AAATAAAGAAATA
1 AAATAAAGAAATA
73654645 AA
1 AA
73654647 GAATGAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (13 bp):
AAATAAAGAAATA
Found at i:73659545 original size:30 final size:30
Alignment explanation
Indices: 73659504--73659560 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
73659494 CACGGATTGC
*
73659504 CACATGGGCGTGTGGCT-AGCCCGTGTGGCT
1 CACACGGGCGTGT-GCTCAGCCCGTGTGGCT
*
73659534 CACACGGGCGTGTGCTCAGCCTGTGTG
1 CACACGGGCGTGTGCTCAGCCCGTGTG
73659561 TAAATGGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.11, C:0.28, G:0.39, T:0.23
Consensus pattern (30 bp):
CACACGGGCGTGTGCTCAGCCCGTGTGGCT
Found at i:73663540 original size:24 final size:24
Alignment explanation
Indices: 73663509--73663577 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
73663499 ATTAATACTT
73663509 TTATGCTAATAAATG-TCAAATATA
1 TTATGCTAATAAATGCT-AAATATA
*
73663533 TTATGCTAATAAATGCTAAATTTA
1 TTATGCTAATAAATGCTAAATATA
* *
73663557 TTATACTAATAAATACTAAAT
1 TTATGCTAATAAATGCTAAAT
73663578 CTTTTGGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 40 0.98
25 1 0.02
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.39
Consensus pattern (24 bp):
TTATGCTAATAAATGCTAAATATA
Found at i:73666223 original size:8 final size:9
Alignment explanation
Indices: 73666177--73666222 Score: 85
Period size: 9 Copynumber: 5.2 Consensus size: 9
73666167 TTATACTTTA
73666177 TTTATAA-T
1 TTTATAATT
73666185 TTTATAATT
1 TTTATAATT
73666194 TTTATAATT
1 TTTATAATT
73666203 TTTATAATT
1 TTTATAATT
73666212 TTTATAATT
1 TTTATAATT
73666221 TT
1 TT
73666223 AATTTAAGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 7 0.19
9 30 0.81
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTATAATT
Found at i:73670413 original size:30 final size:30
Alignment explanation
Indices: 73670359--73670419 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 30
73670349 ACTAAGCAAT
73670359 TTTCATATACATGTATCATCCATTT-CATG
1 TTTCATATACATGTATCATCCATTTCCATG
73670388 TTTCAATATATCATGTAAT-AT-CATTTCCATG
1 TTTC-ATATA-CATGT-ATCATCCATTTCCATG
73670419 T
1 T
73670420 ATTTCATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
29 4 0.14
30 10 0.36
31 12 0.43
32 2 0.07
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.46
Consensus pattern (30 bp):
TTTCATATACATGTATCATCCATTTCCATG
Found at i:73672356 original size:15 final size:15
Alignment explanation
Indices: 73672338--73672369 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
73672328 ATTTTACTGC
73672338 TATTTATATTTTAAT
1 TATTTATATTTTAAT
*
73672353 TATTTTTATTTTAAT
1 TATTTATATTTTAAT
73672368 TA
1 TA
73672370 CATTTAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TATTTATATTTTAAT
Found at i:73675278 original size:35 final size:35
Alignment explanation
Indices: 73675239--73675311 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
73675229 GGTACGTGAT
73675239 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
73675274 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
73675309 ATA
1 ATA
73675312 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:73687572 original size:25 final size:26
Alignment explanation
Indices: 73687536--73687589 Score: 83
Period size: 25 Copynumber: 2.1 Consensus size: 26
73687526 ATATATTTAT
*
73687536 CATCTAATCATCATTTATGTAATTAA
1 CATCTAATCATCATTTATGAAATTAA
*
73687562 CATCT-ATCATCATTTATGAAATTTA
1 CATCTAATCATCATTTATGAAATTAA
73687587 CAT
1 CAT
73687590 ACCTCGCACA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.37, C:0.17, G:0.04, T:0.43
Consensus pattern (26 bp):
CATCTAATCATCATTTATGAAATTAA
Found at i:73691048 original size:20 final size:19
Alignment explanation
Indices: 73691004--73691050 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
73690994 CAAAAACAAA
*
73691004 AATAAAATAAGAGAAAACT
1 AATAAAATAAGAGAAAAAT
*
73691023 ACTAAAATAA-ATGGAAAAAT
1 AATAAAATAAGA--GAAAAAT
73691043 AATAAAAT
1 AATAAAAT
73691051 TAGGTTGCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 1 0.04
19 9 0.39
20 13 0.57
ACGTcount: A:0.68, C:0.04, G:0.09, T:0.19
Consensus pattern (19 bp):
AATAAAATAAGAGAAAAAT
Found at i:73694099 original size:15 final size:16
Alignment explanation
Indices: 73694066--73694107 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
73694056 CGAGTTATCC
73694066 AAAAATAATTAAAAGAT
1 AAAAAT-ATTAAAAGAT
73694083 -AAAATATTAGAAA-AT
1 AAAAATATTA-AAAGAT
73694098 AAAAATATTA
1 AAAAATATTA
73694108 TGCTAATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (16 bp):
AAAAATATTAAAAGAT
Found at i:73708470 original size:17 final size:17
Alignment explanation
Indices: 73708444--73708479 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
73708434 CCATTCATTC
73708444 AAATCAAAACAAAGAAG
1 AAATCAAAACAAAGAAG
*
73708461 AAATCTAAACAAAGAAG
1 AAATCAAAACAAAGAAG
73708478 AA
1 AA
73708480 GAAGTTAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.69, C:0.11, G:0.11, T:0.08
Consensus pattern (17 bp):
AAATCAAAACAAAGAAG
Found at i:73722878 original size:18 final size:18
Alignment explanation
Indices: 73722855--73722889 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
73722845 AAAGTGATAA
73722855 AATTAAA-AGATAATAAAT
1 AATTAAATAGA-AATAAAT
73722873 AATTAAATAGAAATAAA
1 AATTAAATAGAAATAAA
73722890 AATAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
AATTAAATAGAAATAAAT
Found at i:73723676 original size:7 final size:7
Alignment explanation
Indices: 73723664--73723690 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
73723654 AATAATGACC
73723664 GATAAAT
1 GATAAAT
73723671 GATAAAT
1 GATAAAT
73723678 GATAAAT
1 GATAAAT
73723685 GATAAA
1 GATAAA
73723691 AATGTTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (7 bp):
GATAAAT
Found at i:73725502 original size:22 final size:21
Alignment explanation
Indices: 73725455--73725504 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
73725445 CGGCCTGCAG
*
73725455 CACGGGCGTGTCTTAGGATCA
1 CACGGGCGTGTCTTAGGACCA
73725476 CACGGGCGTGTCCCTT-GGACCA
1 CACGGGCGTGT--CTTAGGACCA
73725498 CACGGGC
1 CACGGGC
73725505 ATGTGAGCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 11 0.42
22 12 0.46
23 3 0.12
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (21 bp):
CACGGGCGTGTCTTAGGACCA
Found at i:73729028 original size:48 final size:48
Alignment explanation
Indices: 73728947--73729071 Score: 169
Period size: 48 Copynumber: 2.6 Consensus size: 48
73728937 GCAACATGGA
* * * * *
73728947 CCCATACATTGTCTTATACTAGCACACATATCATCACCGATGCCATTT
1 CCCAAACATGGTCTTACACTGGCACACATATCATCACCGATGCCATGT
* * *
73728995 CCCAGACATGGTCTTACACTGGCACACATATCATCGCTGATGCCATGT
1 CCCAAACATGGTCTTACACTGGCACACATATCATCACCGATGCCATGT
*
73729043 CCCAAACATGGTCTTACACTGGCAAACAT
1 CCCAAACATGGTCTTACACTGGCACACAT
73729072 TAAATATGGT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (48 bp):
CCCAAACATGGTCTTACACTGGCACACATATCATCACCGATGCCATGT
Found at i:73730172 original size:13 final size:13
Alignment explanation
Indices: 73730156--73730226 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
73730146 AAATTTCTCC
*
73730156 AAAGCACTTCTCA
1 AAAGCACTTTTCA
*
73730169 AAAGTACTTTTCA
1 AAAGCACTTTTCA
*
73730182 AAAGCACTTTTCC
1 AAAGCACTTTTCA
*
73730195 ACAGCACTTTTCA
1 AAAGCACTTTTCA
73730208 AAAGCACTTTTCA
1 AAAGCACTTTTCA
73730221 AAAGCA
1 AAAGCA
73730227 ATGAAGAACT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 51 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.28
Consensus pattern (13 bp):
AAAGCACTTTTCA
Found at i:73731181 original size:60 final size:60
Alignment explanation
Indices: 73731110--73731230 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
73731100 AAACACAATT
73731110 TTCATGAAATCATTCCGTGAAATTGTAGACCATAAAAATATAGTAAAAACAAAATTTTCC
1 TTCATGAAATCATTCCGTGAAATTGTAGACCATAAAAATATAGTAAAAACAAAATTTTCC
73731170 TTCATGAAATCATTCCGTGAAATTGTAGACCATAAAAATATAGTAAAAACAAAATTTTCC
1 TTCATGAAATCATTCCGTGAAATTGTAGACCATAAAAATATAGTAAAAACAAAATTTTCC
73731230 T
1 T
73731231 CATCGAATTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.31
Consensus pattern (60 bp):
TTCATGAAATCATTCCGTGAAATTGTAGACCATAAAAATATAGTAAAAACAAAATTTTCC
Found at i:73736359 original size:46 final size:46
Alignment explanation
Indices: 73736306--73736477 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
73736296 GGTTGAACAT
73736306 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * *
73736352 CCGAACTCATTGAGTTGAGTCTGAGTTC-GTGA--GATGC-AACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
*
73736397 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
*
73736445 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73736478 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
45 4 0.04
46 57 0.53
47 26 0.24
48 4 0.04
50 6 0.06
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:73736462 original size:93 final size:93
Alignment explanation
Indices: 73736303--73736472 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
73736293 AATGGTTGAA
73736303 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGTT
*
73736368 GAGTCTGAGTTCGTGAGATGCAACTAGG
66 GAGTCCGAGTTCGTGAGATGCAACTAGG
* * *
73736396 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGAGCTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGTT
73736461 GAGTCCGAGTTC
66 GAGTCCGAGTTC
73736473 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGTT
GAGTCCGAGTTCGTGAGATGCAACTAGG
Found at i:73736738 original size:19 final size:20
Alignment explanation
Indices: 73736701--73736738 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73736691 ATAAGGTGGT
73736701 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
73736721 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
73736739 TGGTGTACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:73742970 original size:34 final size:34
Alignment explanation
Indices: 73742930--73742998 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
73742920 TAAAAAACAA
73742930 AATTAAAAGCCAATTTTTGTCCATCTTCTTCATT
1 AATTAAAAGCCAATTTTTGTCCATCTTCTTCATT
73742964 AATTAAAAGCCAATTTTTGTCCATCTTCTTCATT
1 AATTAAAAGCCAATTTTTGTCCATCTTCTTCATT
73742998 A
1 A
73742999 GGCCGAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.30, C:0.20, G:0.06, T:0.43
Consensus pattern (34 bp):
AATTAAAAGCCAATTTTTGTCCATCTTCTTCATT
Found at i:73743910 original size:46 final size:46
Alignment explanation
Indices: 73743857--73744028 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
73743847 GGTTGAGCAG
73743857 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
* * * *
73743903 CCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAAGCAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--T
* * *
73743950 CCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
* *
73743996 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73744029 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 57 0.55
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
Found at i:73744016 original size:93 final size:93
Alignment explanation
Indices: 73743852--73744023 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
73743842 AGGATGGTTG
* *
73743852 AGCAGCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAG
1 AGCAGCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
73743917 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
73743945 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 AGCAGCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
*
73744010 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
73744024 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
AGCAGCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:73749695 original size:46 final size:46
Alignment explanation
Indices: 73749645--73749817 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
73749635 TGGTTGAGCA
73749645 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73749691 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
73749736 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
73749784 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73749818 GGGCGGGTTA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73749801 original size:93 final size:93
Alignment explanation
Indices: 73749642--73749812 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
73749632 GGATGGTTGA
* *
73749642 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73749707 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
73749735 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73749800 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73749813 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73751517 original size:21 final size:21
Alignment explanation
Indices: 73751492--73751543 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
73751482 GAAGACTTGA
73751492 GTTAAGTTAAAGGACACTCGG
1 GTTAAGTTAAAGGACACTCGG
*
73751513 GTTAAGTTAAAGGACACTTGG
1 GTTAAGTTAAAGGACACTCGG
73751534 GTTAAGTTAA
1 GTTAAGTTAA
73751544 GGGAAAGTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.29
Consensus pattern (21 bp):
GTTAAGTTAAAGGACACTCGG
Found at i:73752609 original size:27 final size:27
Alignment explanation
Indices: 73752549--73752619 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
73752539 CGGAAAACTT
*
73752549 TAAATAAGAAAGCCTTTGTAGCAATCTC
1 TAAA-AAGAAAGCCTTCGTAGCAATCTC
* * * *
73752577 TGAAAAGGAAGCCTTCGTAGCTATGTC
1 TAAAAAGAAAGCCTTCGTAGCAATCTC
*
73752604 TAAAAAAGAAAACCTT
1 T-AAAAAGAAAGCCTT
73752620 TGTGGCACAA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 20 0.59
28 14 0.41
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (27 bp):
TAAAAAGAAAGCCTTCGTAGCAATCTC
Found at i:73756760 original size:51 final size:51
Alignment explanation
Indices: 73756620--73756798 Score: 164
Period size: 51 Copynumber: 3.5 Consensus size: 51
73756610 CTGATGCCCG
* * * *
73756620 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CACAAA
1 GTGGCCTGCACATAGTACCACACATGTGA-TCAAAGCTATCTT-TTACACATA
* * *
73756671 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTTACACATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCTATCTTTTACACATA
* * * *** **
73756722 GTGGCCTGCACTTAATACCACACATGTGATCGAAGCTATCGGGTACGTATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCTATCTTTTACACATA
* * *
73756773 GTAGCCTGCACTTAGTACTACACATG
1 GTGGCCTGCACATAGTACCACACATG
73756799 CGACCTAACC
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
50 2 0.02
51 104 0.97
52 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACATGTGATCAAAGCTATCTTTTACACATA
Found at i:73767394 original size:46 final size:46
Alignment explanation
Indices: 73767289--73767604 Score: 329
Period size: 46 Copynumber: 6.7 Consensus size: 46
73767279 AGGGTATAAT
*
73767289 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCCATCA--A-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-T-CATCATGAG
* * *
73767336 GTCGATGCCATGTCCTAGACATGTCTTACACTGGCT-TACATCTTGAG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTGGCTCT-CATCATGAG
* * *
73767383 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATC-TCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCAT-GAG
* *
73767429 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCATGAG
* * * *
73767477 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTC-TCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCAT-GAG
* * *
73767523 GCCGATGCTATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCTCTCATCATGAG
*
73767571 GCCGATGCATGTCCCAGACATGTCTTACATTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
73767605 ACACAAATAA
Statistics
Matches: 230, Mismatches: 27, Indels: 25
0.82 0.10 0.09
Matches are distributed among these distances:
44 5 0.02
45 2 0.01
46 90 0.39
47 82 0.36
48 49 0.21
49 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCATGAG
Found at i:73767464 original size:140 final size:137
Alignment explanation
Indices: 73767283--73767604 Score: 388
Period size: 140 Copynumber: 2.3 Consensus size: 137
73767273 AAACATAGGG
*
73767283 TATAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCCATCAA-GT-CGATGCCA
1 TATAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AATGTGCGATG-CA
* * **
73767346 TGTCCTAGACATGTCTTACACTGGCT-TACATCTTGAGGCCGATGC-ATGTCCCAGACAT-GTCT
62 TGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAAGGCCGATGCTATGTCCCAGACATGGTCT
73767408 TACACTAGCTCT
126 TACACTAGCTCT
*
73767420 CATCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGC
1 --TAT-AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-G-CGATGC
* *
73767485 ATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCTATGTCCCAGACATGGTCT
61 ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATGCTATGTCCCAGACATGGTCT
*
73767550 TACACTGGCTCT
126 TACACTAGCTCT
*
73767562 TATAATGTGGCCGATG-CATGTCCCAGACAT-GTCTTACATTGGC
1 TATAA--T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
73767605 ACACAAATAA
Statistics
Matches: 161, Mismatches: 11, Indels: 21
0.83 0.06 0.11
Matches are distributed among these distances:
137 2 0.01
138 5 0.03
139 5 0.03
140 93 0.58
141 34 0.21
142 22 0.14
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (137 bp):
TATAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGCGATGCATGTC
CCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATGCTATGTCCCAGACATGGTCTTACAC
TAGCTCT
Found at i:73767481 original size:94 final size:94
Alignment explanation
Indices: 73767289--73767599 Score: 452
Period size: 94 Copynumber: 3.3 Consensus size: 94
73767279 AGGGTATAAT
* * *
73767289 GCCGATGCCATGTCCTAGACATGGTCTTACACT-G-GCTCATCCATCAA-GTCGATGCCATGTCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-C-TCAATGCCGATGCCATGTCC
* ** *
73767351 TAGACAT-GTCTTACACTGGCT-TACATCTTGAG
62 CAGACATGGTCTTACACTGGCTCT-CATAATGTG
73767383 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGA
73767448 CATGGTCTTACACTGGCTCTCATAATGTG
66 CATGGTCTTACACTGGCTCTCATAATGTG
* *
73767477 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCTATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGA
*
73767542 CATGGTCTTACACTGGCTCTTATAATGTG
66 CATGGTCTTACACTGGCTCTCATAATGTG
73767571 GCCGATGCATGTCCCAGACATGTCTTACA
1 GCCGATGCATGTCCCAGACATGTCTTACA
73767600 TTGGCACACA
Statistics
Matches: 202, Mismatches: 10, Indels: 10
0.91 0.05 0.05
Matches are distributed among these distances:
92 14 0.07
93 35 0.17
94 152 0.75
95 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (94 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGA
CATGGTCTTACACTGGCTCTCATAATGTG
Found at i:73770387 original size:41 final size:41
Alignment explanation
Indices: 73770336--73770436 Score: 148
Period size: 41 Copynumber: 2.5 Consensus size: 41
73770326 TCAAATATTG
* *
73770336 TCCTTTTCAACCTTTTCATTTCATATCCTTTTCGGATATCA
1 TCCTTTTCAACCTTTTCATTTCATATCCTTTTCAGATAACA
** *
73770377 TCCTTTTCAACCTTTTCATTTGTTATCCTTTTCAGATAACT
1 TCCTTTTCAACCTTTTCATTTCATATCCTTTTCAGATAACA
*
73770418 TTCTTTTCAACCTTTTCAT
1 TCCTTTTCAACCTTTTCAT
73770437 AGATTCGGAA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.19, C:0.26, G:0.04, T:0.51
Consensus pattern (41 bp):
TCCTTTTCAACCTTTTCATTTCATATCCTTTTCAGATAACA
Found at i:73783400 original size:27 final size:28
Alignment explanation
Indices: 73783324--73783400 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 28
73783314 GCGGCACATT
* **
73783324 GCATGGGATGCATGG-TTCACATGAAAC
1 GCATGGGTTGCATGGAAACACATGAAAC
* *
73783351 GCATGGGTTGCATGGAAA-TCATGAAAT
1 GCATGGGTTGCATGGAAACACATGAAAC
**
73783378 GCATGTTTTGCAT-GAAACACATG
1 GCATGGGTTGCATGGAAACACATG
73783401 GAGTGCATAC
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 4 0.10
27 36 0.90
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (28 bp):
GCATGGGTTGCATGGAAACACATGAAAC
Found at i:73791036 original size:209 final size:210
Alignment explanation
Indices: 73790676--73791536 Score: 797
Period size: 209 Copynumber: 4.1 Consensus size: 210
73790666 CAAGTAGTGC
* * * * * * * *
73790676 AAGCTCAATCTACCAACTGTAATTTTAAGGCTTGTAGGTTTAATATTTTAGCCCC-AAAACAGTT
1 AAGCTCAAGCTCCCAACTGTAATTTTAAAGCTTGCAGGTTCAATACTGTAGCCCCTAAAATAGTT
** * * * * * * *
73790740 AGTGCGAGCTTAAGCTTCTAGTTGTAATTTTAAGGCTTAC-GAGTTCAATACCACAACCCTCAAA
66 AGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTTACAG-GTTCAATACCGCAACCCCCAAA
* * *
73790804 ATAGTTAGCGCGAGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGTA-GTTCAATGCCACAGCCC
130 ATAGTTAGCGCGAGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGCAGGTTCAATACCGCAGCCC
73790868 CCAAAATAGTTA-C-T
195 CCAAAATAGTTAGCGT
*
73790882 GAGAGCTCAAGCTCCCAACTGTAATTTTAAAGCTTGCAGGTTCAATACTGTAGCCCCTGAAATAG
1 -A-AGCTCAAGCTCCCAACTGTAATTTTAAAGCTTGCAGGTTCAATACTGTAGCCCCTAAAATAG
* ** *
73790947 TTAGCACGAGCTCAAACTCCCAATTGTAACTTTAAGGCTTACAGGTTCAATATTGCAGCCCCCAA
64 TTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTTACAGGTTCAATACCGCAACCCCCAA
* * * * ** *
73791012 AATAATTAGCGCGAGCTTAAGCTCCCAGCTATAGTTTTAAGGCTCGCAGGTTCAATACTGCAG-C
129 AATAGTTAGCGCGAGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGCAGGTTCAATACCGCAGCC
* *
73791076 CTCGAAATAGTTAGCGT
194 CCCAAAATAGTTAGCGT
* * * * * * * ** *
73791093 AAGCTCCAGATCCTAACTGTAACTTTAAGGCTCGCATGTTCAATACCATAGCCCCTGAAATAGTT
1 AAGCTCAAGCTCCCAACTGTAATTTTAAAGCTTGCAGGTTCAATACTGTAGCCCCTAAAATAGTT
* ** * ** * * * * * *
73791158 AGCGA-GAGCTCAACCTCCCAGCTATAACTTTAAGGCTTGTAGGTTCAATATCGTAGCTCTCGAA
66 AGC-ACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTTACAGGTTCAATACCGCAACCCCCAAA
* * * ** * *
73791222 ATAGTTAGCACAAGCTCCAGCTCCCAAATGTAACTTTAAGGCTCGCAGGTTCAATATCGCAACCC
130 ATAGTTAGCGCGAGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGCAGGTTCAATACCGCAGCCC
* * *
73791287 CCAAAACAATTAGTGT
195 CCAAAATAGTTAGCGT
* * * * * *
73791303 AAGCTTAAGCTCTCAGCTGTAGTTTT-AAGACTTGCAGGTTCAATA-TCGTAGTCTCTAAAATAG
1 AAGCTCAAGCTCCCAACTGTAATTTTAAAG-CTTGCAGGTTCAATACT-GTAGCCCCTAAAATAG
** *
73791366 TTAGCACGAGCTCAAGCTCCCCAATTGTAGTTTTAAGGCTTGCAGGTTCAATACCGCAACCCCCA
64 TTAGCACGAGCTCAAGCT-CCCAATTGTAACTTTAAGGCTTACAGGTTCAATACCGCAACCCCCA
* *** * * * * *
73791431 AAATAGTTAGCGTGAGCTCAAGCTCTTGGTTGTAATTTTAAGGCTTGTAGGTTCAATACTGTAGC
128 AAATAGTTAGCGCGAGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGCAGGTTCAATACCGCAGC
* *
73791496 CTCC-AAATCAGTTAGCGC
193 CCCCAAAAT-AGTTAGCGT
*
73791514 GAGCTCAAGCTCCCAACTGTAAT
1 AAGCTCAAGCTCCCAACTGTAAT
73791537 CCTAAGGCTC
Statistics
Matches: 514, Mismatches: 127, Indels: 22
0.78 0.19 0.03
Matches are distributed among these distances:
207 1 0.00
208 47 0.09
209 266 0.52
210 89 0.17
211 111 0.22
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (210 bp):
AAGCTCAAGCTCCCAACTGTAATTTTAAAGCTTGCAGGTTCAATACTGTAGCCCCTAAAATAGTT
AGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTTACAGGTTCAATACCGCAACCCCCAAAA
TAGTTAGCGCGAGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGCAGGTTCAATACCGCAGCCCC
CAAAATAGTTAGCGT
Found at i:73791066 original size:140 final size:140
Alignment explanation
Indices: 73790727--73791581 Score: 787
Period size: 140 Copynumber: 6.1 Consensus size: 140
73790717 AATATTTTAG
* * * * * * * *
73790727 CCCCAAAACAGTTAGTGCGAGCTTAAGCTTCTAGTTGTAATTTTAAGGCTTAC-GAGTTCAATAC
1 CCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAG-GTTCAATAC
*** * * * * *
73790791 CACAACC-CTCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGTA-GTT
65 TGTAGCCTCT-GAAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTT
* *
73790854 CAATGCCACAGC
129 CAATACCGCAGC
* *
73790866 CCCCAAAATAGTTA-CTGAGAGCTCAAGCTCCCAACTGTAATTTTAAAGCTTGCAGGTTCAATAC
1 CCCCAAAATAGTTAGC-GAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAGGTTCAATAC
* * **
73790930 TGTAGCCCCTGAAATAGTTAGCACGAGCTCAAACTCCCAATTGTAACTTTAAGGCTTACAGGTTC
65 TGTAGCCTCTGAAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTTC
**
73790995 AATATTGCAGC
130 AATACCGCAGC
* * * * * *
73791006 CCCCAAAATAATTAGCGCGAGCTTAAGCTCCCAGCTATAGTTTTAAGGCTCGCAGGTTCAATACT
1 CCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAGGTTCAATACT
* *** * * * * *
73791071 GCAGCCTC-GAAATAGTTAGCGTAAGCTCCAGATCCTAACTGTAACTTTAAGGCTCGCATGTTCA
66 GTAGCCTCTGAAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTTCA
**
73791135 ATACCATAGC
131 ATACCGCAGC
** * * * *
73791145 CCCTGAAATAGTTAGCGAGAGCTCAACCTCCCAGCTATAACTTTAAGGCTTGTAGGTTCAATA-T
1 CCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAGGTTCAATACT
* * *
73791209 CGTAG-CTCTCGAAATAGTTAGCACAAGCTCCAGCTCCCAAATGTAACTTTAAGGCTCGCAGGTT
66 -GTAGCCTCT-GAAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTT
* *
73791273 CAATATCGCAAC
129 CAATACCGCAGC
* * * * * * *
73791285 CCCCAAAACAATTAGTGTA-AGCTTAAGCTCTCAGCTGTAGTTTTAAGACTTGCAGGTTCAATA-
1 CCCCAAAATAGTTAGCG-AGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAGGTTCAATAC
* * ** *
73791348 TCGTAGTCTCTAAAATAGTTAGCACGAGCTCAAGCTCCCCAATTGTAGTTTTAAGGCTTGCAGGT
65 T-GTAGCCTCTGAAATAGTTAGCACGAGCTCAAGCT-CCCAATTGTAACTTTAAGGCTCGCAGGT
*
73791413 TCAATACCGCAAC
128 TCAATACCGCAGC
* *** * *
73791426 CCCCAAAATAGTTAGCGTGAGCTCAAGCTCTTGGTTGTAATTTTAAGGCTTGTAGGTTCAATACT
1 CCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAGGTTCAATACT
* * * * * *
73791491 GTAGCCTC-CAAATCAGTTAGCGCGAGCTCAAGCTCCCAACTGTAA-TCCTAAGGCTCGAAGATT
66 GTAGCCTCTGAAAT-AGTTAGCACGAGCTCAAGCTCCCAATTGTAACT-TTAAGGCTCGCAGGTT
* * *
73791554 TAATACCACATC
129 CAATACCGCAGC
* *
73791566 CTCCAAAGTAGTTAGC
1 CCCCAAAATAGTTAGC
73791582 CTGAGCCCAC
Statistics
Matches: 584, Mismatches: 117, Indels: 29
0.80 0.16 0.04
Matches are distributed among these distances:
138 4 0.01
139 205 0.35
140 255 0.44
141 119 0.20
142 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (140 bp):
CCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAGGTTCAATACT
GTAGCCTCTGAAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTTCA
ATACCGCAGC
Found at i:73791536 original size:70 final size:69
Alignment explanation
Indices: 73790677--73791545 Score: 595
Period size: 70 Copynumber: 12.4 Consensus size: 69
73790667 AAGTAGTGCA
* * * * * * *
73790677 AGCTCAATCTACCAACTGTAATTTTAAGGCTTGTAGGTTTAATATTTTAGCC-CCAAAACAGTTA
1 AGCTCAAGCTCCCAACTGTAATTTTAAGGCTTGCAGGTTCAATACTGTAGCCTCC-AAATAGTTA
*
73790741 GTGCG
65 GCGCG
* * * ** * *** * *
73790746 AGCTTAAGCTTCTAGTTGTAATTTTAAGGCTTAC-GAGTTCAATACCACAACCCTCAAAATAGTT
1 AGCTCAAGCTCCCAACTGTAATTTTAAGGCTTGCAG-GTTCAATA-CTGTAGCCTCCAAATAGTT
73790810 AGCGCG
64 AGCGCG
** * * * * *** *
73790816 AGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGTA-GTTCAATGCCACAGCCCCCAAAATAGTTA
1 AGCTCAAGCTCCCAACTGTAATTTTAAGGCTTGCAGGTTCAATACTGTAGCCTCC-AAATAGTTA
*
73790880 -CTGAG
65 GC-GCG
*
73790885 AGCTCAAGCTCCCAACTGTAATTTTAAAGCTTGCAGGTTCAATACTGTAGCC-CCTGAAATAGTT
1 AGCTCAAGCTCCCAACTGTAATTTTAAGGCTTGCAGGTTCAATACTGTAGCCTCC--AAATAGTT
*
73790949 AGCACG
64 AGCGCG
* * * * * * * *
73790955 AGCTCAAACTCCCAATTGTAACTTTAAGGCTTACAGGTTCAATATTGCAGCCCCCAAAATAATTA
1 AGCTCAAGCTCCCAACTGTAATTTTAAGGCTTGCAGGTTCAATACTGTAGCCTCC-AAATAGTTA
73791020 GCGCG
65 GCGCG
* * * * * * *
73791025 AGCTTAAGCTCCCAGCTATAGTTTTAAGGCTCGCAGGTTCAATACTGCAGCCTCGAAATAGTTAG
1 AGCTCAAGCTCCCAACTGTAATTTTAAGGCTTGCAGGTTCAATACTGTAGCCTCCAAATAGTTAG
**
73791090 CGTA
66 CGCG
* * * * * * **
73791094 AGCTCCAGATCCTAACTGTAACTTTAAGGCTCGCATGTTCAATACCATAGCC-CCTGAAATAGTT
1 AGCTCAAGCTCCCAACTGTAATTTTAAGGCTTGCAGGTTCAATACTGTAGCCTCC--AAATAGTT
*
73791158 AGCGAG
64 AGCGCG
* * * * * *
73791164 AGCTCAACCTCCCAGCTATAACTTTAAGGCTTGTAGGTTCAATA-TCGTAGCTCTCGAAATAGTT
1 AGCTCAAGCTCCCAACTGTAATTTTAAGGCTTGCAGGTTCAATACT-GTAGC-CTCCAAATAGTT
* *
73791228 AGCACA
64 AGCGCG
* * * * * * * * *
73791234 AGCTCCAGCTCCCAAATGTAACTTTAAGGCTCGCAGGTTCAATA-TCGCAACCCCCAAAACAATT
1 AGCTCAAGCTCCCAACTGTAATTTTAAGGCTTGCAGGTTCAATACT-GTAGCCTCC-AAATAGTT
* **
73791298 AGTGTA
64 AGCGCG
* * * * * * *
73791304 AGCTTAAGCTCTCAGCTGTAGTTTTAAGACTTGCAGGTTCAATA-TCGTAGTCTCTAAAATAGTT
1 AGCTCAAGCTCCCAACTGTAATTTTAAGGCTTGCAGGTTCAATACT-GTAGCCTC-CAAATAGTT
*
73791368 AGCACG
64 AGCGCG
* * * * * *
73791374 AGCTCAAGCTCCCCAATTGTAGTTTTAAGGCTTGCAGGTTCAATACCGCAACCCCCAAAATAGTT
1 AGCTCAAGCT-CCCAACTGTAATTTTAAGGCTTGCAGGTTCAATACTGTAGCCTCC-AAATAGTT
*
73791439 AGCGTG
64 AGCGCG
***** *
73791445 AGCTCAAGCTCTTGGTTGTAATTTTAAGGCTTGTAGGTTCAATACTGTAGCCTCCAAATCAGTTA
1 AGCTCAAGCTCCCAACTGTAATTTTAAGGCTTGCAGGTTCAATACTGTAGCCTCCAAAT-AGTTA
73791510 GCGCG
65 GCGCG
**
73791515 AGCTCAAGCTCCCAACTGTAATCCTAAGGCT
1 AGCTCAAGCTCCCAACTGTAATTTTAAGGCT
73791546 CGAAGATTTA
Statistics
Matches: 612, Mismatches: 167, Indels: 41
0.75 0.20 0.05
Matches are distributed among these distances:
68 8 0.01
69 139 0.23
70 403 0.66
71 61 0.10
72 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (69 bp):
AGCTCAAGCTCCCAACTGTAATTTTAAGGCTTGCAGGTTCAATACTGTAGCCTCCAAATAGTTAG
CGCG
Found at i:73792341 original size:29 final size:31
Alignment explanation
Indices: 73792293--73792356 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
73792283 TTTATAGTTA
*
73792293 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
*
73792324 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
73792353 TTTA
1 TTTA
73792357 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:73792345 original size:8 final size:8
Alignment explanation
Indices: 73792334--73792358 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
73792324 TTTAATAAGA
73792334 TATTTTAT
1 TATTTTAT
73792342 TATTTTAT
1 TATTTTAT
73792350 TATTTTAT
1 TATTTTAT
73792358 T
1 T
73792359 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:73796862 original size:21 final size:21
Alignment explanation
Indices: 73796829--73796888 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
73796819 TACTCAGAAT
* *
73796829 GTCAATCCTATGAATAATGGG
1 GTCAATCCTATGAACAATGGA
73796850 GTCAAGTCC-ATGAACAATGGA
1 GTCAA-TCCTATGAACAATGGA
73796871 GTCAAAT--TATGAACAATG
1 GTC-AATCCTATGAACAATG
73796889 ATAATATGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
20 10 0.29
21 19 0.56
22 5 0.15
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (21 bp):
GTCAATCCTATGAACAATGGA
Found at i:73797205 original size:18 final size:18
Alignment explanation
Indices: 73797182--73797220 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
73797172 AAACAACAAC
*
73797182 AATGATAATGATGATAAT
1 AATGATAATGATAATAAT
*
73797200 AATGATGATGATAATAAT
1 AATGATAATGATAATAAT
73797218 AAT
1 AAT
73797221 AGTAATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.33
Consensus pattern (18 bp):
AATGATAATGATAATAAT
Found at i:73797209 original size:15 final size:15
Alignment explanation
Indices: 73797189--73797217 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73797179 AACAATGATA
73797189 ATGATGATAATAATG
1 ATGATGATAATAATG
73797204 ATGATGATAATAAT
1 ATGATGATAATAAT
73797218 AATAGTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.34
Consensus pattern (15 bp):
ATGATGATAATAATG
Found at i:73798211 original size:19 final size:19
Alignment explanation
Indices: 73798176--73798228 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
73798166 GTTAAAAATA
* *
73798176 ATTTCTAAATAATTTTTTTT
1 ATTTTTAAAT-ATTTTTTAT
73798196 ATTTTTAAATATTTTTTAT
1 ATTTTTAAATATTTTTTAT
73798215 ATTATTTAAA-ATTT
1 ATT-TTTAAATATTT
73798229 AAGTTTAGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTTTAAATATTTTTTAT
Found at i:73800279 original size:10 final size:11
Alignment explanation
Indices: 73800263--73800302 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
73800253 TTATTTCTTT
73800263 TTAATAATTTC
1 TTAATAATTTC
73800274 TT-ATAA-TTC
1 TTAATAATTTC
*
73800283 TTAATAATTTT
1 TTAATAATTTC
73800294 TTAATAATT
1 TTAATAATT
73800303 ATTTGAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
9 5 0.19
10 8 0.31
11 13 0.50
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (11 bp):
TTAATAATTTC
Found at i:73800288 original size:20 final size:21
Alignment explanation
Indices: 73800263--73800302 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
73800253 TTATTTCTTT
73800263 TTAATAATTTCTT-ATAATTC
1 TTAATAATTTCTTAATAATTC
*
73800283 TTAATAATTTTTTAATAATT
1 TTAATAATTTCTTAATAATT
73800303 ATTTGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
TTAATAATTTCTTAATAATTC
Found at i:73803994 original size:20 final size:20
Alignment explanation
Indices: 73803965--73804006 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
73803955 CAACCAAAAT
*
73803965 AAAACCAAAT-ATTAAACCA
1 AAAACCAAATAATAAAACCA
73803984 AAAATCCAAATAATAAAACCA
1 AAAA-CCAAATAATAAAACCA
73804005 AA
1 AA
73804007 TTAATAGTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 6 0.30
21 10 0.50
ACGTcount: A:0.67, C:0.19, G:0.00, T:0.14
Consensus pattern (20 bp):
AAAACCAAATAATAAAACCA
Found at i:73804106 original size:35 final size:34
Alignment explanation
Indices: 73804039--73804106 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 34
73804029 CAAATTACAT
*
73804039 AAACCAAATTTAAAACCCAAAACATTACAAACCC
1 AAACCAAATTTAAAACCCAAAACAATACAAACCC
73804073 AAACTCAAATTTAAAACCCAAAACTAATA-AAACC
1 AAAC-CAAATTTAAAACCCAAAAC-AATACAAACC
73804107 TTAAGCCCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
34 4 0.13
35 24 0.77
36 3 0.10
ACGTcount: A:0.57, C:0.26, G:0.00, T:0.16
Consensus pattern (34 bp):
AAACCAAATTTAAAACCCAAAACAATACAAACCC
Found at i:73805136 original size:15 final size:14
Alignment explanation
Indices: 73805107--73805145 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 14
73805097 TTTAATCTAT
73805107 TATTTCTATTATTA
1 TATTTCTATTATTA
73805121 TATTTCTATGTATTA
1 TATTTCTAT-TATTA
*
73805136 TCTTTCTATT
1 TATTTCTATT
73805146 TGTATTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.64
Consensus pattern (14 bp):
TATTTCTATTATTA
Found at i:73805265 original size:26 final size:27
Alignment explanation
Indices: 73805210--73805267 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
73805200 TAATATTATT
* *
73805210 TTATTATTATCAGTTATTATTATTCCTA
1 TTATTATTAACAG-TATCATTATTCCTA
*
73805238 TTATTATTAACA-TATCATTATTCTTA
1 TTATTATTAACAGTATCATTATTCCTA
73805264 TTAT
1 TTAT
73805268 CATTCTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 16 0.59
28 11 0.41
ACGTcount: A:0.31, C:0.10, G:0.02, T:0.57
Consensus pattern (27 bp):
TTATTATTAACAGTATCATTATTCCTA
Found at i:73805308 original size:3 final size:3
Alignment explanation
Indices: 73805300--73805471 Score: 106
Period size: 3 Copynumber: 58.0 Consensus size: 3
73805290 ATCAGCGTGG
* * ** *
73805300 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAC CCT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
73805348 TA- TAT CAT TAT TTT TAT TAT TAT T-T T-T TAT TAT TGT TAT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
73805393 TA- TAT TAT TAC TAT TCT TCT TAAT GTAT TAT TATT TAT T-T TCCAC
1 TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TA-T TAT TAT T--AT
* * *
73805438 T-T TAT TAT TAT TGT T-G TAT TAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
73805472 CACCATGTTA
Statistics
Matches: 131, Mismatches: 27, Indels: 22
0.73 0.15 0.12
Matches are distributed among these distances:
2 12 0.09
3 111 0.85
4 6 0.05
5 2 0.02
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:73805548 original size:3 final size:3
Alignment explanation
Indices: 73805540--73805610 Score: 65
Period size: 3 Copynumber: 23.7 Consensus size: 3
73805530 TTTATTTACG
* * * *
73805540 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTCG TTG TTG GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
*
73805585 TT- TGTA TTA TTA TTT TTA TTA TTA TT
1 TTA T-TA TTA TTA TTA TTA TTA TTA TT
73805611 TTCACCATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
2 3 0.05
3 53 0.90
4 3 0.05
ACGTcount: A:0.24, C:0.01, G:0.07, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:73812008 original size:10 final size:10
Alignment explanation
Indices: 73811989--73812038 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
73811979 TTAAATTCTA
73811989 AAAGATAAAT
1 AAAGATAAAT
73811999 ACAA-ATAAAT
1 A-AAGATAAAT
*
73812009 AAAGATAATT
1 AAAGATAAAT
73812019 AAAGATAAAT
1 AAAGATAAAT
73812029 GAAA-ATAAAT
1 -AAAGATAAAT
73812039 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:73823971 original size:13 final size:15
Alignment explanation
Indices: 73823937--73823970 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 15
73823927 ATGTCATGCA
73823937 AATAAACATAGAAAAT
1 AATAAACATA-AAAAT
73823953 AATAAACATAAAATAT
1 AATAAACATAAAA-AT
73823969 AA
1 AA
73823971 AATTACATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.21
Consensus pattern (15 bp):
AATAAACATAAAAAT
Found at i:73824504 original size:12 final size:11
Alignment explanation
Indices: 73824451--73824611 Score: 101
Period size: 12 Copynumber: 14.6 Consensus size: 11
73824441 TTTTTAAAAT
73824451 TATACATAATAA
1 TATA-ATAATAA
73824463 TA-AATAATAA
1 TATAATAATAA
*
73824473 AATAATAA-AA
1 TATAATAATAA
73824483 TA-AA-AATAA
1 TATAATAATAA
73824492 TATAATGAATAA
1 TATAAT-AATAA
73824504 TATATATAATAA
1 TATA-ATAATAA
*
73824516 AATGATATAAT-A
1 TAT-A-ATAATAA
73824528 TATAATAA-AA
1 TATAATAATAA
73824538 TAT-ATAAATAA
1 TATAAT-AATAA
*
73824549 AATATATAATAA
1 TATA-ATAATAA
*
73824561 AAT-ATAGATAA
1 TATAATA-ATAA
73824572 TATAATAAATAA
1 TATAAT-AATAA
*
73824584 TA-CATAAATAA
1 TATAAT-AATAA
73824595 -A-AATAATATA
1 TATAATAATA-A
73824605 TATAATA
1 TATAATA
73824612 TTTTTTACAT
Statistics
Matches: 123, Mismatches: 8, Indels: 36
0.74 0.05 0.22
Matches are distributed among these distances:
8 2 0.02
9 12 0.10
10 30 0.24
11 26 0.21
12 41 0.33
13 12 0.10
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (11 bp):
TATAATAATAA
Found at i:73824505 original size:29 final size:28
Alignment explanation
Indices: 73824456--73824611 Score: 134
Period size: 29 Copynumber: 5.7 Consensus size: 28
73824446 AAAATTATAC
*
73824456 ATAATAATAA-ATAATAA-AATAATAAA
1 ATAAAAATAATATAATAATAATAATAAA
*
73824482 ATAAAAATAATATAATGAATAATATATATA
1 ATAAAAATAATATAAT-AATAATA-ATAAA
*
73824512 AT-AAAATGATATAAT-AT-ATAATAAA
1 ATAAAAATAATATAATAATAATAATAAA
*
73824537 AT--ATATAA-ATAA-AATATATAATAAA
1 ATAAAAATAATATAATAATA-ATAATAAA
* *
73824562 ATATAGATAATATAATAAATAATACAT-AA
1 ATAAAAATAATATAAT-AATAATA-ATAAA
73824591 ATAAAAATAATATATATAATA
1 ATAAAAATAATATA-ATAATA
73824612 TTTTTTACAT
Statistics
Matches: 107, Mismatches: 9, Indels: 25
0.76 0.06 0.18
Matches are distributed among these distances:
23 6 0.06
24 4 0.04
25 16 0.15
26 12 0.11
27 12 0.11
28 6 0.06
29 37 0.35
30 14 0.13
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.31
Consensus pattern (28 bp):
ATAAAAATAATATAATAATAATAATAAA
Found at i:73824533 original size:63 final size:59
Alignment explanation
Indices: 73824458--73824609 Score: 173
Period size: 63 Copynumber: 2.5 Consensus size: 59
73824448 AATTATACAT
*
73824458 AATAATAAATAATAAAATAATA-AAATAAAAATAATATAATGAATAATATATATAATAAAATGA
1 AATAATAAATAATAAAATAATATAAAT-AAAAT-ATATAAT-AA-AATATAGATAATAAAAT-A
* * *
73824521 TATAATATATAATAAAAT-ATATAAATAAAATATATAATAAAATATAGATAATATAATA
1 AATAATAAATAATAAAATAATATAAATAAAATATATAATAAAATATAGATAATAAAATA
* *
73824579 AATAATACATAAATAAAAATAATATATATAA
1 AATAATAAAT-AAT-AAAATAATATAAATAA
73824610 TATTTTTTAC
Statistics
Matches: 78, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
58 9 0.12
59 18 0.23
60 7 0.09
61 16 0.21
62 8 0.10
63 20 0.26
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.31
Consensus pattern (59 bp):
AATAATAAATAATAAAATAATATAAATAAAATATATAATAAAATATAGATAATAAAATA
Found at i:73824541 original size:32 final size:31
Alignment explanation
Indices: 73824459--73824606 Score: 112
Period size: 32 Copynumber: 4.7 Consensus size: 31
73824449 ATTATACATA
* *
73824459 ATAATAAATAATAAAATA-ATAA-AATAA-AA
1 ATAATATATAATAAAATATATAATAA-AATAT
*
73824488 ATAATATAATGAATAATATATATAATAAAATGAT
1 ATAATAT-AT-AATAAAATATATAATAAAAT-AT
73824522 ATAATATATAATAAAATATATAAATAAAATAT
1 ATAATATATAATAAAATATAT-AATAAAATAT
*
73824554 ATAATA-A-AATATAGATAATATAAT-AAATA-
1 ATAATATATAATA-AAAT-ATATAATAAAATAT
* *
73824583 ATACATAAATAAAAATAATATATA
1 ATA-ATATATAATAA-AATATATA
73824607 TAATATTTTT
Statistics
Matches: 99, Mismatches: 7, Indels: 24
0.76 0.05 0.18
Matches are distributed among these distances:
29 9 0.09
30 14 0.14
31 22 0.22
32 34 0.34
33 12 0.12
34 8 0.08
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.31
Consensus pattern (31 bp):
ATAATATATAATAAAATATATAATAAAATAT
Found at i:73824612 original size:59 final size:50
Alignment explanation
Indices: 73824499--73824611 Score: 105
Period size: 52 Copynumber: 2.3 Consensus size: 50
73824489 TAATATAATG
* *
73824499 AATAATATATATAATAAA-AT---G--ATATAATATATAATAAAATATATA
1 AATAATATATATAATAAATATAAAGAAATATAATAAATAATAAAA-ATAAA
* *
73824544 AATAAAATATATAATAAA-ATATAGATAATATAATAAATAATACATAAATAAA
1 AATAATATATATAATAAATATAAAGA-AATATAATAAATAATA-A-AAATAAA
73824596 AATAATATATATAATA
1 AATAATATATATAATA
73824612 TTTTTTACAT
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
45 19 0.34
48 1 0.02
51 14 0.25
52 20 0.36
53 2 0.04
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.33
Consensus pattern (50 bp):
AATAATATATATAATAAATATAAAGAAATATAATAAATAATAAAAATAAA
Found at i:73824677 original size:29 final size:30
Alignment explanation
Indices: 73824644--73824701 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
73824634 TTTATAGTAA
*
73824644 AAATAAATAATATAT-AAAATATTTAAAAT
1 AAATAAATAATATATAAAAAAATTTAAAAT
*
73824673 AAATAAATTATATATAAAAAAATTTAAAA
1 AAATAAATAATATATAAAAAAATTTAAAA
73824702 AGGAGTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (30 bp):
AAATAAATAATATATAAAAAAATTTAAAAT
Found at i:73826282 original size:90 final size:90
Alignment explanation
Indices: 73826113--73826880 Score: 1047
Period size: 90 Copynumber: 8.5 Consensus size: 90
73826103 TAATATACTT
* * * * *
73826113 GATCTGCTCCCCGTCAAATACAGAGACGCCAAATCTG-CTATCTTTGATCTACTTCAATATAAAC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGATGTAAAC
* *
73826177 ACATGAATGTCAGATCTGCTATCTGC
65 ACACGAATGTCAGATCTGCTATCTTC
* * * * *
73826203 GA-CTTACTCCCCGTCTAATACAGAAACGCCAAATCTATCATTTTCGATCTGCTTTGATGTAAAC
1 GATC-TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAAC
* * * *
73826267 AAACAAATATAAGATCTGCTATCTTC
65 ACACGAATGTCAGATCTGCTATCTTC
* * * * *
73826293 GATCTGCTCCCCGTTTAATACAGAGACGCCAAATCTGTCATTTTCAATCTACTTTGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
* * *
73826358 CACAAATGTCACATCTGCTATCTTT
66 CACGAATGTCAGATCTGCTATCTTC
* * *
73826383 GATCTGCACCCCGTCTAATACAGAGACACCAAATCTGTCATCTTCGATCTGCTTCGATATAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
*
73826448 CACGAATGTCAGATCTGCTATCTTT
66 CACGAATGTCAGATCTGCTATCTTC
*
73826473 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATATGCTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
*
73826538 CACGAATGTCAGATTTGCTATCTTC
66 CACGAATGTCAGATCTGCTATCTTC
* * *
73826563 GATCTACTACCCCGTCTAATATAGAGACGCCAAATCTGTCATCTTCAATCTGCTTCGATGTAAAC
1 GATCTGCT-CCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAAC
* *
73826628 ACACGAATGTCAAATCTTCTATCTTC
65 ACACGAATGTCAGATCTGCTATCTTC
* * * *
73826654 AATCTGCTCCCCGTCTAATATAGGGACGCCAAATCTATCATCTTCGATCTGCTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
73826719 CACGAATGTCAGATCTGCTATCTTC
66 CACGAATGTCAGATCTGCTATCTTC
* *
73826744 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATTTGTCATCTTCGATCTGTTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
*
73826809 CACGAATGTTAGATCTGCTATCTTC
66 CACGAATGTCAGATCTGCTATCTTC
** * * * * *
73826834 GATCTATTCCTCGTCTAATATAGAAACACCAAATCTG-CTTCTTCGAT
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGAT
73826881 TTGTTCCCCG
Statistics
Matches: 602, Mismatches: 72, Indels: 9
0.88 0.11 0.01
Matches are distributed among these distances:
89 10 0.02
90 508 0.84
91 84 0.14
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (90 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
CACGAATGTCAGATCTGCTATCTTC
Found at i:73826785 original size:361 final size:359
Alignment explanation
Indices: 73826111--73826880 Score: 1076
Period size: 361 Copynumber: 2.1 Consensus size: 359
73826101 GTTAATATAC
* * *
73826111 TTGATCTGCTCCCCGTCAAATACAGAGACGCCAAATCTGCTATCTTTGATCTACTTCAATATAAA
1 TTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGC-ATCTTCGATATACTTCAATATAAA
*
73826176 CACATGAATGTCAGATCTGCTATCTGCGACTTACTCCCCGTCTAATACAGAAACGCCAAATCTAT
65 CACACGAATGTCAGATCTGCTATCTGCGACTTACTCCCCGTCTAATACAGAAACGCCAAATCTAT
* * * *
73826241 CATTTTCGATCTGCTTTGATGTAAACAAACAAATATAAGATCTGCTATCTTCGATCTGCTCCCCG
130 CATCTTCAATCTGCTTCGATGTAAACAAACAAATATAAGATCTGCTATCTTCAATCTGCTCCCCG
* * * *
73826306 TTTAATACAGAGACGCCAAATCTGTCATTTTCAATCTACTTTGATGTAAACACACAAATGTCACA
195 TCTAATACAGAGACGCCAAATCTATCATCTTCAATCTACTTCGATGTAAACACACAAATGTCACA
*
73826371 TCTGCTATCTTTGATCTGCACCCCGTCTAATACAGAGACACCAAATCTGTCATCTTCGATCTGCT
260 TCTGCTATCTTCGATCTGCACCCCGTCTAATACAGAGACACCAAATCTGTCATCTTCGATCTGCT
73826436 TCGATATAAACACACGAATGTCAGATCTGCTATCT
325 TCGATATAAACACACGAATGTCAGATCTGCTATCT
* * *
73826471 TTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATATGCTTCGATGTAAA
1 TTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG-CATCTTCGATATACTTCAATATAAA
* * * *
73826536 CACACGAATGTCAGATTTGCTATCTTCGA-TCTACTACCCCGTCTAATATAGAGACGCCAAATCT
65 CACACGAATGTCAGATCTGCTATCTGCGACT-TACT-CCCCGTCTAATACAGAAACGCCAAATCT
* * * * *
73826600 GTCATCTTCAATCTGCTTCGATGTAAACACACGAATGTCAA-ATCTTCTATCTTCAATCTGCTCC
128 ATCATCTTCAATCTGCTTCGATGTAAACAAACAAATAT-AAGATCTGCTATCTTCAATCTGCTCC
* * * * *
73826664 CCGTCTAATATAGGGACGCCAAATCTATCATCTTCGATCTGCTTCGATGTAAACACACGAATGTC
192 CCGTCTAATACAGAGACGCCAAATCTATCATCTTCAATCTACTTCGATGTAAACACACAAATGTC
* * * *
73826729 AGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATTTGTCATCTTCGATCT
257 ACATCTGCTATCTTCGATCTGCACCCCGTCTAATACAGAGACACCAAATCTGTCATCTTCGATCT
* * *
73826794 GTTTCGATGTAAACACACGAATGTTAGATCTGCTATCT
322 GCTTCGATATAAACACACGAATGTCAGATCTGCTATCT
* ** * * * * *
73826832 TCGATCTATTCCTCGTCTAATATAGAAACACCAAATCTGCTTCTTCGAT
1 TTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCATCTTCGAT
73826881 TTGTTCCCCG
Statistics
Matches: 361, Mismatches: 45, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
359 1 0.00
360 96 0.27
361 262 0.73
362 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (359 bp):
TTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCATCTTCGATATACTTCAATATAAAC
ACACGAATGTCAGATCTGCTATCTGCGACTTACTCCCCGTCTAATACAGAAACGCCAAATCTATC
ATCTTCAATCTGCTTCGATGTAAACAAACAAATATAAGATCTGCTATCTTCAATCTGCTCCCCGT
CTAATACAGAGACGCCAAATCTATCATCTTCAATCTACTTCGATGTAAACACACAAATGTCACAT
CTGCTATCTTCGATCTGCACCCCGTCTAATACAGAGACACCAAATCTGTCATCTTCGATCTGCTT
CGATATAAACACACGAATGTCAGATCTGCTATCT
Found at i:73838439 original size:13 final size:15
Alignment explanation
Indices: 73838405--73838438 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 15
73838395 ATATCATGCA
73838405 AATAAACATAGAAAAT
1 AATAAACATA-AAAAT
73838421 AATAAACATAAAATAT
1 AATAAACATAAAA-AT
73838437 AA
1 AA
73838439 AATTACATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.21
Consensus pattern (15 bp):
AATAAACATAAAAAT
Found at i:73838920 original size:17 final size:16
Alignment explanation
Indices: 73838904--73839078 Score: 90
Period size: 17 Copynumber: 10.2 Consensus size: 16
73838894 ATTTTAAAAT
*
73838904 TATACATAATAATAAA
1 TATAAATAATAATAAA
73838920 TAATAAATAATAAAATAAA
1 T-ATAAATAAT--AATAAA
*
73838939 -ATATATAATAATAAA
1 TATAAATAATAATAAA
*
73838954 AATAATATAATGAATAATA
1 TATAA-ATAAT-AATAA-A
*
73838973 TATATAATAA-AATGATA
1 TATA-AATAATAAT-AAA
*
73838990 TAATATATAATAA-AATA
1 T-ATAAATAATAATAA-A
*
73839007 TATAAATAA-AATATA
1 TATAAATAATAATAAA
73839022 TAATAAA-ATATAGATAATA
1 T-ATAAATA-ATA-ATAA-A
*
73839041 TAATAAATAATCATAAA
1 T-ATAAATAATAATAAA
*
73839058 TAAAAATAATATATATAA
1 TATAAATAATA-ATA-AA
73839076 TAT
1 TAT
73839079 TTTTTACATA
Statistics
Matches: 124, Mismatches: 14, Indels: 40
0.70 0.08 0.22
Matches are distributed among these distances:
15 11 0.09
16 27 0.22
17 38 0.31
18 22 0.18
19 24 0.19
20 2 0.02
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.33
Consensus pattern (16 bp):
TATAAATAATAATAAA
Found at i:73838923 original size:7 final size:7
Alignment explanation
Indices: 73838911--73839068 Score: 82
Period size: 7 Copynumber: 22.0 Consensus size: 7
73838901 AATTATACAT
73838911 AATAATA
1 AATAATA
73838918 AATAATA
1 AATAATA
73838925 AATAAT-
1 AATAATA
73838931 AA-AATA
1 AATAATA
73838937 AA-ATATA
1 AATA-ATA
73838944 TAATAATA
1 -AATAATA
73838952 AA-AATA
1 AATAATA
*
73838958 ATATAATG
1 A-ATAATA
73838966 AATAATA
1 AATAATA
73838973 TATATAAT-
1 -A-ATAATA
73838981 AA-AATGA
1 AATAAT-A
*
73838988 TATAATA
1 AATAATA
*
73838995 TATAATAA
1 AATAAT-A
73839003 AATATATA
1 AATA-ATA
73839011 AATAAAATA
1 AAT--AATA
*
73839020 TATAATA
1 AATAATA
73839027 AA-ATATA
1 AATA-ATA
*
73839034 GATAATA
1 AATAATA
73839041 TAATAA-A
1 -AATAATA
*
73839048 TAATCATA
1 -AATAATA
73839056 AATAA-A
1 AATAATA
73839062 AATAATA
1 AATAATA
73839069 TATATAATAT
Statistics
Matches: 121, Mismatches: 10, Indels: 40
0.71 0.06 0.23
Matches are distributed among these distances:
5 6 0.05
6 18 0.15
7 56 0.46
8 27 0.22
9 13 0.11
10 1 0.01
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.31
Consensus pattern (7 bp):
AATAATA
Found at i:73838938 original size:12 final size:12
Alignment explanation
Indices: 73838911--73839077 Score: 96
Period size: 12 Copynumber: 13.6 Consensus size: 12
73838901 AATTATACAT
73838911 AATAATAAATAATA
1 AATAAT-AA-AATA
73838925 AATAATAAAATAA
1 AATAATAAAAT-A
73838938 AATATATAATAATA
1 AATA-ATAA-AATA
*
73838952 AA-AATAATAT-
1 AATAATAAAATA
*
73838962 AATGAATAATATA
1 AAT-AATAAAATA
*
73838975 TATAATAAAAT-
1 AATAATAAAATA
*
73838986 GAT-AT--AATA
1 AATAATAAAATA
*
73838995 TATAATAAAATA
1 AATAATAAAATA
*
73839007 TATAAATAAAATA
1 AAT-AATAAAATA
*
73839020 TATAATAAAATA
1 AATAATAAAATA
*
73839032 TAGATAATATAATA
1 -A-ATAATAAAATA
73839046 AATAATCATAAATA
1 AATAAT-A-AAATA
*
73839060 AA-AATAATATA
1 AATAATAAAATA
*
73839071 TATAATA
1 AATAATA
73839078 TTTTTTACAT
Statistics
Matches: 127, Mismatches: 10, Indels: 34
0.74 0.06 0.20
Matches are distributed among these distances:
8 3 0.02
9 2 0.02
10 6 0.05
11 9 0.07
12 48 0.38
13 27 0.21
14 29 0.23
15 3 0.02
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.32
Consensus pattern (12 bp):
AATAATAAAATA
Found at i:73838970 original size:45 final size:45
Alignment explanation
Indices: 73838909--73839077 Score: 164
Period size: 45 Copynumber: 3.9 Consensus size: 45
73838899 AAAATTATAC
73838909 ATAATAATA-AATAATAAATA-ATAAAATAAAATATATAATAATA
1 ATAATAATATAATAATAAATATATAAAATAAAATATATAATAATA
* *
73838952 AAAATAATATAATGAAT-AATATATATAATAAAATGATATAATATATA
1 ATAATAATATAAT-AATAAATATATAAAATAAAAT-ATATAATA-ATA
* *
73838999 ATAA-AATAT-ATAAATAAA-ATATATAATAAAATATA-GATAAT-
1 ATAATAATATAAT-AATAAATATATAAAATAAAATATATAATAATA
* *
73839040 ATAATAA-ATAATCAT-AA-ATA-AAAATAATATATATAATA
1 ATAATAATATAATAATAAATATATAAAATAAAATATATAATA
73839078 TTTTTTACAT
Statistics
Matches: 108, Mismatches: 9, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
39 11 0.10
40 8 0.07
41 8 0.07
42 6 0.06
43 11 0.10
44 10 0.09
45 33 0.31
46 15 0.14
47 6 0.06
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.32
Consensus pattern (45 bp):
ATAATAATATAATAATAAATATATAAAATAAAATATATAATAATA
Found at i:73839008 original size:32 final size:31
Alignment explanation
Indices: 73838914--73839077 Score: 107
Period size: 32 Copynumber: 5.4 Consensus size: 31
73838904 TATACATAAT
* *
73838914 AATAAATAAT-AAATA-ATAAAATAAAAT-A
1 AATATATAATAAAATATATAATATAAAATAA
*
73838942 TATA-ATAAT-AAA-A-ATAATATAATGAATAA
1 AATATATAATAAAATATATAATATAA--AATAA
* *
73838971 TATATATAATAAAATGATATAATATATAATAA
1 AATATATAATAAAAT-ATATAATATAAAATAA
73839003 AATATATAAATAAAATATAT-A-ATAAAATATA
1 AATATAT-AATAAAATATATAATATAAAATA-A
*
73839034 GATAATATAAT-AAATAATCATAA-ATAAAAATAA
1 AAT-ATATAATAAAAT-AT-ATAATAT-AAAATAA
*
73839067 TATATATAATA
1 AATATATAATA
73839078 TTTTTTACAT
Statistics
Matches: 113, Mismatches: 7, Indels: 27
0.77 0.05 0.18
Matches are distributed among these distances:
26 9 0.08
27 8 0.07
28 6 0.05
29 5 0.04
30 16 0.14
31 12 0.11
32 28 0.25
33 15 0.13
34 14 0.12
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.32
Consensus pattern (31 bp):
AATATATAATAAAATATATAATATAAAATAA
Found at i:73839143 original size:29 final size:30
Alignment explanation
Indices: 73839110--73839167 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
73839100 TCTATAGTAA
*
73839110 AAATAAATAATATAT-AAAATATTTAAAAT
1 AAATAAATAATATATAAAAAAATTTAAAAT
*
73839139 AAATAAATTATATATAAAAAAATTTAAAA
1 AAATAAATAATATATAAAAAAATTTAAAA
73839168 AGGAGTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (30 bp):
AAATAAATAATATATAAAAAAATTTAAAAT
Found at i:73840648 original size:14 final size:14
Alignment explanation
Indices: 73840629--73840657 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
73840619 AAAAACCAAT
73840629 TGTAATAAGGAGTA
1 TGTAATAAGGAGTA
73840643 TGTAATAAGGAGTA
1 TGTAATAAGGAGTA
73840657 T
1 T
73840658 TTATAACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (14 bp):
TGTAATAAGGAGTA
Found at i:73843243 original size:2 final size:2
Alignment explanation
Indices: 73843236--73843268 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
73843226 TATCAAGTTG
73843236 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73843269 GATGGAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73844700 original size:61 final size:61
Alignment explanation
Indices: 73844605--73844725 Score: 215
Period size: 61 Copynumber: 2.0 Consensus size: 61
73844595 TCTACTACAC
* *
73844605 CAATCCGCCTAGGTCTATGGATTATCTAAACAGAACAGACAACAGATGTGAGTTTACATAT
1 CAATCCACCTAGGTCTATGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACATAT
*
73844666 CAATCCACCTAGGTCTGTGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACATA
1 CAATCCACCTAGGTCTATGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACATA
73844726 AACTCAGTGT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (61 bp):
CAATCCACCTAGGTCTATGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACATAT
Found at i:73848053 original size:20 final size:20
Alignment explanation
Indices: 73848009--73848060 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
73847999 AGTAAATTAT
* *
73848009 ATTATTTTTTAAATTCTTTT
1 ATTATTTTTTAAAATCTTTA
73848029 A-TATTTTTATAAAAT-TTTA
1 ATTATTTTT-TAAAATCTTTA
73848048 ATTATTTATTTAA
1 ATTATTT-TTTAA
73848061 TTATTATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 11 0.41
20 14 0.52
21 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
ATTATTTTTTAAAATCTTTA
Found at i:73850611 original size:12 final size:13
Alignment explanation
Indices: 73850594--73850622 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
73850584 TTTTTAATTT
73850594 ATATAAAAAA-TA
1 ATATAAAAAAGTA
73850606 ATATAAAAAAGTA
1 ATATAAAAAAGTA
73850619 ATAT
1 ATAT
73850623 GAGCCGGACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (13 bp):
ATATAAAAAAGTA
Found at i:73860183 original size:21 final size:20
Alignment explanation
Indices: 73860129--73860184 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 20
73860119 CCAAACCTAC
*
73860129 TAATAGAATAATAATGAAAAG
1 TAATAGAA-AATAATAAAAAG
73860150 TAATATGATAAATAATAAAATAG
1 TAATA-GA-AAATAATAAAA-AG
73860173 TAATAGAAAATA
1 TAATAGAAAATA
73860185 CAAATTTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 10 0.32
22 13 0.42
23 8 0.26
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.27
Consensus pattern (20 bp):
TAATAGAAAATAATAAAAAG
Found at i:73860681 original size:19 final size:20
Alignment explanation
Indices: 73860606--73860681 Score: 70
Period size: 20 Copynumber: 4.0 Consensus size: 20
73860596 TTTAATTAAT
*
73860606 TTTTTTAATA-TTT-AAATA
1 TTTTTTGATATTTTAAAATA
*
73860624 TTTTTT-ATATTTTTAAAAAA
1 TTTTTTGATA-TTTTAAAATA
** *
73860644 TTTAATGATTTTTTAAAATA
1 TTTTTTGATATTTTAAAATA
73860664 TTTTTTGA-ATTTTAAAAT
1 TTTTTTGATATTTTAAAAT
73860682 CATAAAAAAC
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
17 3 0.07
18 6 0.13
19 12 0.26
20 23 0.50
21 2 0.04
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTTTTGATATTTTAAAATA
Found at i:73861232 original size:22 final size:24
Alignment explanation
Indices: 73861178--73861237 Score: 67
Period size: 22 Copynumber: 2.7 Consensus size: 24
73861168 TACAATGATA
73861178 TTAT-TTTTATGT-TATATATCGT
1 TTATATTTTATGTATATATATCGT
*
73861200 TTATTATTTTATGTATAT-TA-CTT
1 TTA-TATTTTATGTATATATATCGT
73861223 TTATATTTTAT-TATA
1 TTATATTTTATGTATA
73861238 AATTATAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
21 4 0.12
22 11 0.32
23 6 0.18
24 10 0.29
25 3 0.09
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.65
Consensus pattern (24 bp):
TTATATTTTATGTATATATATCGT
Found at i:73861242 original size:23 final size:23
Alignment explanation
Indices: 73861176--73861237 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
73861166 TTTACAATGA
*
73861176 TATTATTTTTATGT-TATATATCGTT
1 TATTA-TTTTATGTATAT-TA-CTTT
73861201 TATTATTTTATGTATATTACTTT
1 TATTATTTTATGTATATTACTTT
73861224 TA-TATTTTAT-TATA
1 TATTATTTTATGTATA
73861238 AATTATAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
21 4 0.11
22 8 0.23
23 5 0.14
24 10 0.29
25 8 0.23
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.65
Consensus pattern (23 bp):
TATTATTTTATGTATATTACTTT
Found at i:73861777 original size:41 final size:40
Alignment explanation
Indices: 73861715--73861853 Score: 136
Period size: 41 Copynumber: 3.4 Consensus size: 40
73861705 GGCGCTAACC
*
73861715 GAAAAACGCCGCAATAA-GTAAAGTAATAGTAGCGTTTATGA
1 GAAAAACGCCACAA-AAGGTAAAGTAATAGT-GCGTTTATGA
* * **
73861756 GAAAAACGCCACAAAAGGTAAAGTAGTAGTGACGTTTTTCT
1 GAAAAACGCCACAAAAGGTAAAGTAATAGTG-CGTTTATGA
* * * * * *
73861797 CATAAATGCCGCAAAAGGTAAAGCAATAGCGGCGTTTATGA
1 GAAAAACGCCACAAAAGGTAAAGTAATAG-TGCGTTTATGA
73861838 GAAAAACGCCACAAAA
1 GAAAAACGCCACAAAA
73861854 TATCCTTTTA
Statistics
Matches: 76, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
40 3 0.04
41 72 0.95
42 1 0.01
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (40 bp):
GAAAAACGCCACAAAAGGTAAAGTAATAGTGCGTTTATGA
Found at i:73861933 original size:35 final size:35
Alignment explanation
Indices: 73861894--73862010 Score: 110
Period size: 35 Copynumber: 3.3 Consensus size: 35
73861884 TTTTGGCTAG
* *
73861894 CCTTAGTTTTATCCCCAAATTAGTTTCCCAAAATC
1 CCTTAGTTTTATCCCCAAATTAATTTCCCCAAATC
* * * * *
73861929 CCTTATTTTTTTCCCTAAAATATTTTCCCCAAATC
1 CCTTAGTTTTATCCCCAAATTAATTTCCCCAAATC
* * **
73861964 CTTTAGTCTTT-TCCCCAAATCAAAATCCCCAAATC
1 CCTTAGT-TTTATCCCCAAATTAATTTCCCCAAATC
73861999 CCTTAGATTTTA
1 CCTTAG-TTTTA
73862011 ATGAAACGGT
Statistics
Matches: 64, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
35 60 0.94
36 4 0.06
ACGTcount: A:0.28, C:0.29, G:0.03, T:0.39
Consensus pattern (35 bp):
CCTTAGTTTTATCCCCAAATTAATTTCCCCAAATC
Found at i:73862069 original size:25 final size:25
Alignment explanation
Indices: 73862031--73862128 Score: 115
Period size: 25 Copynumber: 3.9 Consensus size: 25
73862021 GAATGTCAGC
* *
73862031 TGCATCACCGTCGACAATCCTCTGT
1 TGCATCACCATCGACAGTCCTCTGT
73862056 TGCATCACCATCGACAGTCCTCTGT
1 TGCATCACCATCGACAGTCCTCTGT
* * *
73862081 CGCATCACCATCGATAGTCCTCTGC
1 TGCATCACCATCGACAGTCCTCTGT
* * * *
73862106 CGTATCGCCATCGATAGTCCTCT
1 TGCATCACCATCGACAGTCCTCT
73862129 ACTGCATTGT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.19, C:0.37, G:0.16, T:0.28
Consensus pattern (25 bp):
TGCATCACCATCGACAGTCCTCTGT
Found at i:73866144 original size:44 final size:44
Alignment explanation
Indices: 73866079--73866207 Score: 118
Period size: 44 Copynumber: 2.9 Consensus size: 44
73866069 ATAACTACGG
** *
73866079 ATATATATTAACACTTGGTGTGCGAGACTGATATAGCTTCAG-CT
1 ATATATATTGGCACTTAGTGTGCGAGA-TGATATAGCTTCAGACT
* * *
73866123 ATATATATTGGCACTTAGTGTGCGTGATTGAGATAGC-TCCGACT
1 ATATATATTGGCACTTAGTGTGCGAGA-TGATATAGCTTCAGACT
* * *
73866167 ATATATTTATTGGCACTTATTATGTGAGATCGATATAGCTT
1 ATATA--TATTGGCACTTAGTGTGCGAGAT-GATATAGCTT
73866208 TGGTTGTTTA
Statistics
Matches: 68, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
43 3 0.04
44 38 0.56
45 1 0.01
46 25 0.37
47 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (44 bp):
ATATATATTGGCACTTAGTGTGCGAGATGATATAGCTTCAGACT
Found at i:73867582 original size:40 final size:41
Alignment explanation
Indices: 73867537--73867632 Score: 133
Period size: 40 Copynumber: 2.4 Consensus size: 41
73867527 CACACACCCA
*
73867537 TGTCCCTAGGCCGTGTCCTTCACATGGCAATGACA-GCCCG
1 TGTCCCTAGGCCGTGTCCTTCACACGGCAATGACATGCCCG
* * *
73867577 TGTCCCTGGGCTGTGTCCTTCACACGGCCATGACATGCCCG
1 TGTCCCTAGGCCGTGTCCTTCACACGGCAATGACATGCCCG
*
73867618 TGT-CCTAGCCCGTGT
1 TGTCCCTAGGCCGTGT
73867633 GTAAAAATCT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 40 0.83
41 8 0.17
ACGTcount: A:0.14, C:0.35, G:0.26, T:0.25
Consensus pattern (41 bp):
TGTCCCTAGGCCGTGTCCTTCACACGGCAATGACATGCCCG
Found at i:73868389 original size:47 final size:46
Alignment explanation
Indices: 73868315--73868583 Score: 156
Period size: 46 Copynumber: 5.7 Consensus size: 46
73868305 TGGGTAAGGT
* *
73868315 GCCGATGTCATGTCCCAAACACAGTCTTACACTAGCTCAT-ATCTCAT-
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTAGCT-ATCATCTCATA
* * *
73868362 GTCGATGCCATGTTCCAGACATGGTCTTTCACT-GACTATCATCTCATA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTATCATCTCATA
* * *
73868410 GCCGATGCATGTCCCAGATATGTCTTACACTAGCT-TACGTCTCGA-G
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTAT-CATCTC-ATA
* * ** *
73868456 GCTGATGCATGTCCCAGACAAGTCTTACACTAGCCCTCGTCTCGAT-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTC-ATA
* * * * * * * * * *
73868502 GCTGATGCCATGTCCTAAACATGGTCTTATACTGGCTCTTATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCAT-CTCATA
* *
73868550 GCTGATACATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
73868584 CCACAATAAC
Statistics
Matches: 178, Mismatches: 31, Indels: 27
0.75 0.13 0.11
Matches are distributed among these distances:
45 1 0.01
46 76 0.43
47 74 0.42
48 26 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCATA
Found at i:73876526 original size:22 final size:22
Alignment explanation
Indices: 73876501--73876563 Score: 117
Period size: 22 Copynumber: 2.9 Consensus size: 22
73876491 TTTGCAAGAA
*
73876501 TTTTCTTTTTGCCATTTGATGT
1 TTTTCTCTTTGCCATTTGATGT
73876523 TTTTCTCTTTGCCATTTGATGT
1 TTTTCTCTTTGCCATTTGATGT
73876545 TTTTCTCTTTGCCATTTGA
1 TTTTCTCTTTGCCATTTGA
73876564 GCTTAGTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.10, C:0.17, G:0.13, T:0.60
Consensus pattern (22 bp):
TTTTCTCTTTGCCATTTGATGT
Found at i:73876812 original size:34 final size:34
Alignment explanation
Indices: 73876774--73876844 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
73876764 ACTTGACTGA
73876774 ACAAAACTTCTATAAGTTCAAAGATACTTACCAG
1 ACAAAACTTCTATAAGTTCAAAGATACTTACCAG
73876808 ACAAAACTTCTATAAGTTCAAAGATACTTACCAG
1 ACAAAACTTCTATAAGTTCAAAGATACTTACCAG
73876842 ACA
1 ACA
73876845 TAAATTATCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.25
Consensus pattern (34 bp):
ACAAAACTTCTATAAGTTCAAAGATACTTACCAG
Found at i:73878697 original size:39 final size:39
Alignment explanation
Indices: 73878574--73878687 Score: 183
Period size: 39 Copynumber: 2.9 Consensus size: 39
73878564 ATTACCAGCA
*
73878574 CCAGCACGAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
73878613 CCAGCACGAAGCCTGCGGGAGTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
73878652 CCAGCACGAAGCCTACGGGACTGTAACCCGGATACA
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACA
73878688 ATCTCAGCAC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:73884891 original size:42 final size:43
Alignment explanation
Indices: 73884826--73884922 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 43
73884816 TAATGATGGG
*
73884826 CACTTAGTGTGCAAAATCGAGATAACTTCGG-ATATATATTGA
1 CACTTAGTGTGCAAAACCGAGATAACTTCGGCATATATATTGA
* * * * *
73884868 CACTTGGTGTGCAAGACCTAGATAGCTTCGGCTATATATATTGG
1 CACTTAGTGTGCAAAACCGAGATAACTTCGGC-ATATATATTGA
73884912 CACTTAGTGTG
1 CACTTAGTGTG
73884923 TGTGATTGAG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
42 26 0.57
44 20 0.43
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
CACTTAGTGTGCAAAACCGAGATAACTTCGGCATATATATTGA
Found at i:73884922 original size:44 final size:44
Alignment explanation
Indices: 73884824--73885015 Score: 192
Period size: 46 Copynumber: 4.4 Consensus size: 44
73884814 GCTAATGATG
* *
73884824 GGCACTTAGTGTGCAAAATCGAGATAACTTCGG--ATATATATT
1 GGCACTTAGTGTGCAAGATCGAGATAGCTTCGGCTATATATATT
* * * *
73884866 GACACTTGGTGTGCAAGACCTAGATAGCTTCGGCTATATATATT
1 GGCACTTAGTGTGCAAGATCGAGATAGCTTCGGCTATATATATT
*** * *
73884910 GGCACTTAGTGTGTGTGATTGAGATAGCTTCAGCTAGATATATATT
1 GGCACTTAGTGTGCAAGATCGAGATAGCTTCGGCT--ATATATATT
** * * *
73884956 GGCACTTAGTGTGTGAGATCGATATAGCTTCGGCTGTTTAT-TT
1 GGCACTTAGTGTGCAAGATCGAGATAGCTTCGGCTATATATATT
*
73884999 GGCACTTATTGTGCAAG
1 GGCACTTAGTGTGCAAG
73885016 TCTCCCAAGT
Statistics
Matches: 122, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
42 27 0.22
43 16 0.13
44 39 0.32
46 40 0.33
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (44 bp):
GGCACTTAGTGTGCAAGATCGAGATAGCTTCGGCTATATATATT
Found at i:73887566 original size:22 final size:22
Alignment explanation
Indices: 73887541--73887584 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
73887531 TAATCTTATA
73887541 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
73887563 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
73887585 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:73887630 original size:16 final size:16
Alignment explanation
Indices: 73887609--73887644 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
73887599 ATTTTATTTT
73887609 AATAATAAATTTAAAA
1 AATAATAAATTTAAAA
* *
73887625 AATAATAATTTTAAAT
1 AATAATAAATTTAAAA
73887641 AATA
1 AATA
73887645 TTATTCACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AATAATAAATTTAAAA
Found at i:73888213 original size:14 final size:14
Alignment explanation
Indices: 73888194--73888232 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
73888184 TCAGAAAAAT
73888194 AAATTATTTTCCAA
1 AAATTATTTTCCAA
*
73888208 AAATTATTTTCCGA
1 AAATTATTTTCCAA
73888222 AAATTATTTTC
1 AAATTATTTTC
73888233 AGTGAAACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.03, T:0.46
Consensus pattern (14 bp):
AAATTATTTTCCAA
Found at i:73894645 original size:39 final size:40
Alignment explanation
Indices: 73894579--73894662 Score: 127
Period size: 39 Copynumber: 2.1 Consensus size: 40
73894569 ATAAAAGTTA
73894579 AAAAAAATCCAAACTTCTCAAAAAAAAATCTTCTTCCCTT
1 AAAAAAATCCAAACTTCTCAAAAAAAAATCTTCTTCCCTT
*
73894619 AAAAAAATCCAAAC-TC-CATAACAAAAATCTTCTTCCCTT
1 AAAAAAATCCAAACTTCTCA-AAAAAAAATCTTCTTCCCTT
*
73894658 CAAAA
1 AAAAA
73894663 GCAACAACAA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.05
39 25 0.61
40 14 0.34
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.25
Consensus pattern (40 bp):
AAAAAAATCCAAACTTCTCAAAAAAAAATCTTCTTCCCTT
Found at i:73896411 original size:23 final size:23
Alignment explanation
Indices: 73896362--73896417 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
73896352 AAATCCCCTC
* * *
73896362 AAAAAATTAGTAAATAATGATTG
1 AAAAAATTATTAAAAAATAATTG
73896385 AAAAAATTATTACAAAAATAATT-
1 AAAAAATTATTA-AAAAATAATTG
*
73896408 AAAACATTAT
1 AAAAAATTAT
73896418 CTTTTATTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 20 0.71
24 8 0.29
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.30
Consensus pattern (23 bp):
AAAAAATTATTAAAAAATAATTG
Found at i:73896769 original size:19 final size:19
Alignment explanation
Indices: 73896745--73896783 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
73896735 TTACAGTGGA
**
73896745 TAGAAAAATTGACTCTTAT
1 TAGAAAAATCAACTCTTAT
73896764 TAGAAAAATCAACTCTTAT
1 TAGAAAAATCAACTCTTAT
73896783 T
1 T
73896784 GCTTACTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.36
Consensus pattern (19 bp):
TAGAAAAATCAACTCTTAT
Found at i:73898531 original size:30 final size:30
Alignment explanation
Indices: 73898469--73898541 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 30
73898459 AGATTGCACA
* *
73898469 AAAGATTT-CTTTCAGTCAAATCTCGCCAC
1 AAAGGTTTCCTTTCAGTCAAATCTCACCAC
**
73898498 AAAGGTTTCCTTTCAGTTGAATCTCACCAC
1 AAAGGTTTCCTTTCAGTCAAATCTCACCAC
73898528 AAAGGTGTTCCTTT
1 AAAGGT-TTCCTTT
73898542 TTTTGCTGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 7 0.18
30 24 0.63
31 7 0.18
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (30 bp):
AAAGGTTTCCTTTCAGTCAAATCTCACCAC
Found at i:73901563 original size:22 final size:20
Alignment explanation
Indices: 73901521--73901563 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
73901511 AATGGTATGA
**
73901521 TCAAAATTTAAATTTCGTTT
1 TCAAAATTTAAATTTAATTT
73901541 TCAATAATGTTAAATTTAATTT
1 TCAA-AAT-TTAAATTTAATTT
73901563 T
1 T
73901564 TTATTATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 3 0.16
22 12 0.63
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (20 bp):
TCAAAATTTAAATTTAATTT
Found at i:73914636 original size:19 final size:20
Alignment explanation
Indices: 73914600--73914641 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
73914590 GTCTTTTCGC
* *
73914600 GAAATTTAATACACATG-AT
1 GAAATGTAATACAAATGAAT
*
73914619 GAAATGTAATGCAAATGAAT
1 GAAATGTAATACAAATGAAT
73914639 GAA
1 GAA
73914642 TGCAAAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.50, C:0.07, G:0.17, T:0.26
Consensus pattern (20 bp):
GAAATGTAATACAAATGAAT
Found at i:73923041 original size:31 final size:31
Alignment explanation
Indices: 73922958--73923043 Score: 100
Period size: 31 Copynumber: 2.8 Consensus size: 31
73922948 TTTCAGTTAA
* * * *
73922958 ATGGGCTCACACGCTCATATGGCCTGTCCGT
1 ATGGGCCCACACGCCCATGTGGCCTATCCGT
* * *
73922989 GTGGGCCCACACGCCTATGTGGCCTATCTGT
1 ATGGGCCCACACGCCCATGTGGCCTATCCGT
*
73923020 ATGGGCCCACACGCCCGTGTGGCC
1 ATGGGCCCACACGCCCATGTGGCC
73923044 CATACGGCCC
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.14, C:0.35, G:0.29, T:0.22
Consensus pattern (31 bp):
ATGGGCCCACACGCCCATGTGGCCTATCCGT
Found at i:73932124 original size:17 final size:17
Alignment explanation
Indices: 73932104--73932137 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
73932094 AAATAGATTT
73932104 TTAATTAAAAAATTTAA
1 TTAATTAAAAAATTTAA
*
73932121 TTAATTAAAAATTTTAA
1 TTAATTAAAAAATTTAA
73932138 ACCTAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAATTAAAAAATTTAA
Found at i:73932864 original size:18 final size:17
Alignment explanation
Indices: 73932826--73932864 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
73932816 GGTTTGAAAA
73932826 TTTTAATTAATTAAATTT
1 TTTTAATTAA-TAAATTT
73932844 TTTTAATTAA-AAATTT
1 TTTTAATTAATAAATTT
73932860 ATTTT
1 -TTTT
73932865 CATCCCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 4 0.20
18 10 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTAATTAATAAATTT
Found at i:73933897 original size:12 final size:12
Alignment explanation
Indices: 73933880--73933905 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73933870 AAGTTAAATA
73933880 AACATGTTCTTG
1 AACATGTTCTTG
73933892 AACATGTTCTTG
1 AACATGTTCTTG
73933904 AA
1 AA
73933906 TATTAAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (12 bp):
AACATGTTCTTG
Found at i:73934018 original size:20 final size:20
Alignment explanation
Indices: 73933993--73934032 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
73933983 CAAAATGAAC
*
73933993 ACAAACAAACTTAAAAATAA
1 ACAAACAAACATAAAAATAA
*
73934013 ACAAACAAACATGAAAATAA
1 ACAAACAAACATAAAAATAA
73934033 GTTTCTTCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.70, C:0.15, G:0.03, T:0.12
Consensus pattern (20 bp):
ACAAACAAACATAAAAATAA
Found at i:73935787 original size:20 final size:20
Alignment explanation
Indices: 73935750--73935788 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
73935740 GGACTAAATC
* * *
73935750 GAGAACTTTTAAATTTTTTT
1 GAGAAATTTCAAAATTTTTT
73935770 GAGAAATTTCAAAATTTTT
1 GAGAAATTTCAAAATTTTT
73935789 CCTAGGTGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.05, G:0.10, T:0.49
Consensus pattern (20 bp):
GAGAAATTTCAAAATTTTTT
Found at i:73938020 original size:37 final size:37
Alignment explanation
Indices: 73937967--73938069 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
73937957 CAAATAGTCC
* *
73937967 CCACAAGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
73938004 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
73938041 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
73938070 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:73938268 original size:48 final size:48
Alignment explanation
Indices: 73938210--73938547 Score: 478
Period size: 48 Copynumber: 7.0 Consensus size: 48
73938200 ATATACACAC
* * * *
73938210 ATCTCCTACATATTTCATATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
73938258 ATCTCTTACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
73938306 ATCTCATACATATTTCATAATAGCCATTCAGTTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
73938354 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAGATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
73938402 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
73938450 ATCTCATACATATTTCATATTAGCCATTCGGCCTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
73938498 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
73938546 AT
1 AT
73938548 ATTTATGTTG
Statistics
Matches: 255, Mismatches: 35, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 255 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:73938474 original size:144 final size:144
Alignment explanation
Indices: 73938210--73938547 Score: 559
Period size: 144 Copynumber: 2.3 Consensus size: 144
73938200 ATATACACAC
* * * * * *
73938210 ATCTCCTACATATTTCATATTAGCCATTCGGCTTTACCAAATATACATATCTCTTACATATATCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATACATATCTCATACATATATCA
**
73938275 CACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATAATAGCCATTCAGTTT
66 CACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATAATAGCCATTCAGCCT
73938340 TACCACATATACAT
131 TACCACATATACAT
*
73938354 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAGATACATATCTCATACATATATCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATACATATCTCATACATATATCA
* *
73938419 CACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATATTAGCCATTCGGCCT
66 CACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATAATAGCCATTCAGCCT
73938484 TACCACATATACAT
131 TACCACATATACAT
* *
73938498 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATACATAT
73938548 ATTTATGTTG
Statistics
Matches: 181, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
144 181 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (144 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATACATATCTCATACATATATCA
CACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATAATAGCCATTCAGCCT
TACCACATATACAT
Found at i:73947917 original size:33 final size:32
Alignment explanation
Indices: 73947871--73947933 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
73947861 TCTATAGAGT
*
73947871 TCAATTGAATTACCTGTCCAGGCTAAATCCAG
1 TCAATTGAATTACCAGTCCAGGCTAAATCCAG
*
73947903 TCAATTAGGATTACCAGTCCAGGCTAAATCC
1 TCAATT-GAATTACCAGTCCAGGCTAAATCC
73947934 TAATTGAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 6 0.21
33 22 0.79
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (32 bp):
TCAATTGAATTACCAGTCCAGGCTAAATCCAG
Found at i:73949614 original size:47 final size:47
Alignment explanation
Indices: 73949561--73949690 Score: 118
Period size: 47 Copynumber: 2.8 Consensus size: 47
73949551 GTGCAAATAA
* *
73949561 TACCTTGATTTGGATATAGGCCATAATATAGGTATTC-AGAGAGGAGT
1 TACCTTGATTTGGATATAGGCCATAATATAGGTACTCTAG-GAGAAGT
* * * * ** *
73949608 TACCTTGGTTTGGCTATGGGCTATGGTATAGGTACTCTAGGATAAGT
1 TACCTTGATTTGGATATAGGCCATAATATAGGTACTCTAGGAGAAGT
** * **
73949655 TACCTTGATTTGCCTATGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGATATAGGCCATAATATAGGTACT
73949691 TATCGATTGA
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
47 68 0.97
48 2 0.03
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGATATAGGCCATAATATAGGTACTCTAGGAGAAGT
Found at i:73955715 original size:78 final size:72
Alignment explanation
Indices: 73955576--73955722 Score: 197
Period size: 78 Copynumber: 2.0 Consensus size: 72
73955566 GAGCTAGTGT
* * *
73955576 AAGACATGTCTGGGACATGCATCGGTTACGAGATGTATCAGTGTAAGACCATGTCTTGGACATGG
1 AAGACATGTCTGGGACATGCATCGGTCACGAGATGTAGCAGTGTAAGACCATGTCTGGGACATGG
73955641 CATCCGA
66 CATCCGA
73955648 AAGACTATGTCTGGGACATGGCATCGG-CACGAGTATGTGAAAGCTAGTGTAAGACCATGTCTGG
1 AAGAC-ATGTCTGGGACAT-GCATCGGTCACGAG-ATGT---AGC-AGTGTAAGACCATGTCTGG
73955712 GACATGGCATC
59 GACATGGCATC
73955723 GGCTTTAATT
Statistics
Matches: 65, Mismatches: 3, Indels: 8
0.86 0.04 0.11
Matches are distributed among these distances:
72 5 0.08
73 18 0.28
74 11 0.17
77 2 0.03
78 29 0.45
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (72 bp):
AAGACATGTCTGGGACATGCATCGGTCACGAGATGTAGCAGTGTAAGACCATGTCTGGGACATGG
CATCCGA
Found at i:73969512 original size:87 final size:86
Alignment explanation
Indices: 73969269--73969678 Score: 540
Period size: 87 Copynumber: 4.8 Consensus size: 86
73969259 GAAAAAGGGT
* * * *
73969269 CTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTGT--AGATCTTATCTCCCTAAGCAGAAGT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATT-TACAGATCTTAGCTCCCTAAGCAGTAG-
73969332 GGAGCAGATCAAAGACGAAGAAC
64 GGAGCAGATCAAAGACGAAGAAC
** * * * *
73969355 CTTAAA-CCCTAAATAGTAGGGTAATAGGTTGAA-TTACAGATCTTATCTCCCTAAGTAGTAGTG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCTCCCTAAGCAGTAG-G
*
73969418 GAGCAGATCGAAGACGAAGAAC
65 GAGCAGATCAAAGACGAAGAAC
*
73969440 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCTCCCTAAGCAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCTCCCTAAGCAGTAGGG
* **
73969505 AAACAGATCAAAGACGAAGGGC
66 -AGCAGATCAAAGACGAAGAAC
*
73969527 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCTCCCTAAGCAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCTCCCTAAGCAGTAGGG
* **
73969592 AAGCAGATCGAAGACGAAGGGC
66 -AGCAGATCAAAGACGAAGAAC
* * * *
73969614 CTTAAACCCCTAAGCAGTAGTGTAACAGGCTGAATTTCCAGATCTTAACCCCCTAAGCAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCTCCCTAAGCAGTAGGG
73969679 TAACAGACAA
Statistics
Matches: 292, Mismatches: 27, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
83 1 0.00
84 1 0.00
85 71 0.24
86 31 0.11
87 188 0.64
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.20
Consensus pattern (86 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCTCCCTAAGCAGTAGGG
AGCAGATCAAAGACGAAGAAC
Found at i:73969547 original size:44 final size:43
Alignment explanation
Indices: 73969403--73969764 Score: 200
Period size: 44 Copynumber: 8.3 Consensus size: 43
73969393 GATCTTATCT
* * *
73969403 CCCTAAGTAGTAGTGG-AGCAGATCGAAGACGAAGAACCTTAACC
1 CCCTAAGCAGTAG-GGAAACAGATCAAAGACGAAG-ACCTTAACC
* * * ** * * *
73969447 CCCTAAGCAGTAGGGTAACAGGCTGAATTTAC--AGATCTTAGCT
1 CCCTAAGCAGTAGGGAAACA-GATCAA-AGACGAAGACCTTAACC
*
73969490 CCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGGCCTTAACC
1 CCCTAAGCAGTAGGGAAACAGATCAAAGACGAA-GACCTTAACC
* * * ** * * *
73969534 CCCTAAGCAGTAGGGTAACAGGCTGAATTTAC--AGATCTTAGCT
1 CCCTAAGCAGTAGGGAAACA-GATCAA-AGACGAAGACCTTAACC
* * * *
73969577 CCCTAAGCAGTAGGGAAGCAGATCGAAGACGAAGGGCCTTAAAC
1 CCCTAAGCAGTAGGGAAACAGATCAAAGACGAA-GACCTTAACC
* * * * *** * *
73969621 CCCTAAGCAGTAGTGTAACAGGCTGAATTTC-CAGATCTTAACC
1 CCCTAAGCAGTAGGGAAACA-GATCAAAGACGAAGACCTTAACC
* * * * *
73969664 CCCTAAGCAGTAGGGTAACAGA-CAAA-ATTGCAGATCTTAACG
1 CCCTAAGCAGTAGGGAAACAGATCAAAGA-CGAAGACCTTAACC
* * *
73969706 CCCTAAGCAGTAGGGAAACAGATCGAAGATGAATAGCCTTAACC
1 CCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGA-CCTTAACC
73969750 CCCTAAGCAGTAGGG
1 CCCTAAGCAGTAGGG
73969765 TAATAGGCTG
Statistics
Matches: 235, Mismatches: 66, Indels: 34
0.70 0.20 0.10
Matches are distributed among these distances:
41 6 0.03
42 40 0.17
43 86 0.37
44 88 0.37
45 11 0.05
46 4 0.02
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGACCTTAACC
Done.