Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 224 of 343
Found at i:73969728 original size:129 final size:130
Alignment explanation
Indices: 73969527--73969813 Score: 432
Period size: 129 Copynumber: 2.2 Consensus size: 130
73969517 GACGAAGGGC
* * * * *
73969527 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCTCCCTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGACTAAAATTACAGATCTTAACGCCCTAAGCAGTAGGG
* * * *
73969592 AAGCAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGTGTAACAGGCTGAATTTCCAGAT
66 AAACAGATCGAAGACGAAGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
*
73969657 CTTAACCCCCTAAGCAGTAGGGTAACAGAC-AAAATTGCAGATCTTAACGCCCTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGACTAAAATTACAGATCTTAACGCCCTAAGCAGTAGGG
* * * *
73969721 AAACAGATCGAAGATGAATAGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGAATTTACAGAT
66 AAACAGATCGAAGACGAAGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
*
73969786 CTTAACCCCCTAAGTAGTAGGGTAACAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAG
73969814 CTGGAAATCA
Statistics
Matches: 142, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
129 113 0.80
130 29 0.20
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (130 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGACTAAAATTACAGATCTTAACGCCCTAAGCAGTAGGG
AAACAGATCGAAGACGAAGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
Found at i:73990533 original size:21 final size:21
Alignment explanation
Indices: 73990489--73990534 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
73990479 ATTTTTTTTA
* *
73990489 AAAATATTATTAAAATTTTGT
1 AAAATATTATTAAAATTATAT
73990510 AAAATATTA-TAAATATTATAT
1 AAAATATTATTAAA-ATTATAT
73990531 AAAA
1 AAAA
73990535 ATGAGAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
AAAATATTATTAAAATTATAT
Found at i:73990840 original size:10 final size:9
Alignment explanation
Indices: 73990816--73990867 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
73990806 TTCTCACTCC
73990816 TTTTATAAT
1 TTTTATAAT
73990825 TTTTATAAT
1 TTTTATAAT
*
73990834 GTTTTATAAAA
1 -TTTTAT-AAT
73990845 TTTTA-ATAT
1 TTTTATA-AT
*
73990854 TTTTTTAAT
1 TTTTATAAT
73990863 TTTTA
1 TTTTA
73990868 ATATATACAT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
8 1 0.03
9 20 0.57
10 12 0.34
11 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:73995029 original size:234 final size:234
Alignment explanation
Indices: 73994620--73995082 Score: 926
Period size: 234 Copynumber: 2.0 Consensus size: 234
73994610 AATCCATGTA
73994620 TTAGAAAGAAATTCTTTTATTGTACTTGACTGCGGTTATTTTTGGTAGTAGGAAAACCGTAAACA
1 TTAGAAAGAAATTCTTTTATTGTACTTGACTGCGGTTATTTTTGGTAGTAGGAAAACCGTAAACA
73994685 TGTTGCAACTTATGTTGCATTCAAGTTTGAGGTGAAATGAAAGCCTGGTTGAATGGTCTGTCATC
66 TGTTGCAACTTATGTTGCATTCAAGTTTGAGGTGAAATGAAAGCCTGGTTGAATGGTCTGTCATC
73994750 TGGTTTTCTTCTGTCGAGCCAAATGATCATAGTGCAGCATGCTCATTTTTATTGTGAACATGATA
131 TGGTTTTCTTCTGTCGAGCCAAATGATCATAGTGCAGCATGCTCATTTTTATTGTGAACATGATA
73994815 TAAAACGAGAAATTGACATGGAAAATTATGTAAATTCTT
196 TAAAACGAGAAATTGACATGGAAAATTATGTAAATTCTT
73994854 TTAGAAAGAAATTCTTTTATTGTACTTGACTGCGGTTATTTTTGGTAGTAGGAAAACCGTAAACA
1 TTAGAAAGAAATTCTTTTATTGTACTTGACTGCGGTTATTTTTGGTAGTAGGAAAACCGTAAACA
73994919 TGTTGCAACTTATGTTGCATTCAAGTTTGAGGTGAAATGAAAGCCTGGTTGAATGGTCTGTCATC
66 TGTTGCAACTTATGTTGCATTCAAGTTTGAGGTGAAATGAAAGCCTGGTTGAATGGTCTGTCATC
73994984 TGGTTTTCTTCTGTCGAGCCAAATGATCATAGTGCAGCATGCTCATTTTTATTGTGAACATGATA
131 TGGTTTTCTTCTGTCGAGCCAAATGATCATAGTGCAGCATGCTCATTTTTATTGTGAACATGATA
73995049 TAAAACGAGAAATTGACATGGAAAATTATGTAAA
196 TAAAACGAGAAATTGACATGGAAAATTATGTAAA
73995083 ATCTGTTAAA
Statistics
Matches: 229, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
234 229 1.00
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (234 bp):
TTAGAAAGAAATTCTTTTATTGTACTTGACTGCGGTTATTTTTGGTAGTAGGAAAACCGTAAACA
TGTTGCAACTTATGTTGCATTCAAGTTTGAGGTGAAATGAAAGCCTGGTTGAATGGTCTGTCATC
TGGTTTTCTTCTGTCGAGCCAAATGATCATAGTGCAGCATGCTCATTTTTATTGTGAACATGATA
TAAAACGAGAAATTGACATGGAAAATTATGTAAATTCTT
Found at i:74003018 original size:33 final size:33
Alignment explanation
Indices: 74002976--74003040 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
74002966 ATCCCCTACC
* *
74002976 AAATGACAAAACCCAACTTTCTACTTTATGGAG
1 AAATGACAAAAACCAACTTTCTACCTTATGGAG
*
74003009 AAATGACAAAAACCAGCTTTCTACCTTATGGA
1 AAATGACAAAAACCAACTTTCTACCTTATGGA
74003041 AAAGGGAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.40, C:0.22, G:0.12, T:0.26
Consensus pattern (33 bp):
AAATGACAAAAACCAACTTTCTACCTTATGGAG
Found at i:74006324 original size:14 final size:14
Alignment explanation
Indices: 74006286--74006328 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
74006276 CAAAATGTAC
74006286 AATATAATTAAA-T
1 AATATAATTAAATT
74006299 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
74006314 AA-ATAATTTAATT
1 AATATAATTAAATT
74006327 AA
1 AA
74006329 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:74009942 original size:16 final size:16
Alignment explanation
Indices: 74009917--74009951 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
74009907 ATTTCAAGTC
74009917 TTACAACCTATTAATT
1 TTACAACCTATTAATT
*
74009933 TTACAGCCTATTAATT
1 TTACAACCTATTAATT
74009949 TTA
1 TTA
74009952 GTCAAAGTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.34, C:0.17, G:0.03, T:0.46
Consensus pattern (16 bp):
TTACAACCTATTAATT
Found at i:74011929 original size:40 final size:40
Alignment explanation
Indices: 74011849--74011930 Score: 130
Period size: 40 Copynumber: 2.0 Consensus size: 40
74011839 ACATCTTCAG
**
74011849 TTGCACGTACTTTACCCGGGAAACTTATGTGCATGGATTC
1 TTGCACGTACTTTACCCGGGAAACTTATGTGCATAAATTC
74011889 TTGCACGTACTTTACCC-GGACAACTTATGTGCATAAATTC
1 TTGCACGTACTTTACCCGGGA-AACTTATGTGCATAAATTC
74011929 TT
1 TT
74011931 ATGTACATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 3 0.08
40 36 0.92
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34
Consensus pattern (40 bp):
TTGCACGTACTTTACCCGGGAAACTTATGTGCATAAATTC
Found at i:74014860 original size:39 final size:40
Alignment explanation
Indices: 74014806--74014884 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
74014796 CTTCAGTTGC
74014806 ACGTACTTTACCCGGA-AACTTATGTGCAT-AGATTCTTGT
1 ACGTACTTTACCCGGACAACTTATGTGCATGA-ATTCTTGT
74014845 ACGTACTTTACCCGGACAACTTATGTGCATGAATTCTTGT
1 ACGTACTTTACCCGGACAACTTATGTGCATGAATTCTTGT
74014885 GTACATGAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
39 16 0.42
40 21 0.55
41 1 0.03
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (40 bp):
ACGTACTTTACCCGGACAACTTATGTGCATGAATTCTTGT
Found at i:74015642 original size:12 final size:12
Alignment explanation
Indices: 74015625--74015657 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
74015615 TGGCCCGACC
74015625 ATATTAATTTTT
1 ATATTAATTTTT
74015637 ATATT-ATTTTT
1 ATATTAATTTTT
74015648 ATA-TAATTTT
1 ATATTAATTTT
74015658 AAAAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:74026679 original size:12 final size:12
Alignment explanation
Indices: 74026657--74026686 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
74026647 TCTGTAACAG
74026657 CTTTGTTTTTCTT
1 CTTT-TTTTTCTT
74026670 CTTTTTTTTCTT
1 CTTTTTTTTCTT
74026682 CTTTT
1 CTTTT
74026687 GGTCATCCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (12 bp):
CTTTTTTTTCTT
Found at i:74039609 original size:33 final size:33
Alignment explanation
Indices: 74039572--74039639 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
74039562 ATTATAGAAG
74039572 ATAGCCTGCATTAGATTTATTTATTTATTTATT
1 ATAGCCTGCATTAGATTTATTTATTTATTTATT
74039605 ATAGCCTGCATTAGATTTATTTATTTATTTATT
1 ATAGCCTGCATTAGATTTATTTATTTATTTATT
74039638 AT
1 AT
74039640 GAATCATAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.54
Consensus pattern (33 bp):
ATAGCCTGCATTAGATTTATTTATTTATTTATT
Found at i:74039623 original size:29 final size:30
Alignment explanation
Indices: 74039572--74039633 Score: 90
Period size: 29 Copynumber: 2.0 Consensus size: 30
74039562 ATTATAGAAG
74039572 ATAGCCTGCATTAGATTTATTTATTTATTTATT
1 ATAGCCTGCATTAG---TATTTATTTATTTATT
74039605 ATAGCCTGCATTAG-ATTTATTTATTTATT
1 ATAGCCTGCATTAGTATTTATTTATTTATT
74039634 TATTATGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 15 0.52
33 14 0.48
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (30 bp):
ATAGCCTGCATTAGTATTTATTTATTTATT
Found at i:74045518 original size:13 final size:13
Alignment explanation
Indices: 74045500--74045528 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
74045490 AACTAAGGTT
74045500 AAAATAGTAAATG
1 AAAATAGTAAATG
74045513 AAAATAGTAAATG
1 AAAATAGTAAATG
74045526 AAA
1 AAA
74045529 TAATATGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.21
Consensus pattern (13 bp):
AAAATAGTAAATG
Found at i:74047035 original size:7 final size:7
Alignment explanation
Indices: 74047023--74047085 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 7
74047013 ACCTTATTTT
74047023 TATATTA
1 TATATTA
74047030 TATATTA
1 TATATTA
74047037 TA-ATTA
1 TATATTA
*
74047043 TTTTATTA
1 -TATATTA
74047051 TATATTA
1 TATATTA
74047058 TTTATATTA
1 --TATATTA
74047067 T-TATTA
1 TATATTA
* *
74047073 TCTATTG
1 TATATTA
74047080 TATATT
1 TATATT
74047086 GTTTTTCACA
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
6 10 0.21
7 26 0.55
8 4 0.09
9 7 0.15
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (7 bp):
TATATTA
Found at i:74047054 original size:16 final size:16
Alignment explanation
Indices: 74047025--74047073 Score: 68
Period size: 15 Copynumber: 3.2 Consensus size: 16
74047015 CTTATTTTTA
74047025 TATTATATATTATA-AT
1 TATT-TATATTATATAT
74047041 TATTT-TATTATATAT
1 TATTTATATTATATAT
74047056 TATTTATATTAT-TAT
1 TATTTATATTATATAT
74047071 TAT
1 TAT
74047074 CTATTGTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.23
15 14 0.45
16 10 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTTATATTATATAT
Found at i:74047059 original size:3 final size:3
Alignment explanation
Indices: 74047016--74047137 Score: 56
Period size: 3 Copynumber: 39.3 Consensus size: 3
74047006 TTTTTTAACC
* *
74047016 TTA TTT TTA -TA TTA TATA TTA TAA TTA TT- TTA TTA TATA TTA TT-
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * **
74047060 TATA TTA TTA TTA TCTA TTG TATA TTG TTT TTCA CAAA TTA TTA TTA
1 T-TA TTA TTA TTA T-TA TTA T-TA TTA TTA TT-A -TTA TTA TTA TTA
*
74047107 TT- TTA -CA TTA TTA CTTA TATA TTA TTA TTA T
1 TTA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA T
74047138 GTTTTTACTT
Statistics
Matches: 90, Mismatches: 15, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
2 8 0.09
3 63 0.70
4 19 0.21
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:74047078 original size:19 final size:18
Alignment explanation
Indices: 74047016--74047085 Score: 72
Period size: 19 Copynumber: 3.8 Consensus size: 18
74047006 TTTTTTAACC
74047016 TTATT-TTTATATTATATA
1 TTATTATTTATATTAT-TA
* *
74047034 TTA-TAATTATTTTATTA
1 TTATTATTTATATTATTA
74047051 TATATTATTTATATTATTA
1 T-TATTATTTATATTATTA
74047070 TTATCTATTGTATATT
1 TTAT-TATT-TATATT
74047086 GTTTTTCACA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
17 4 0.09
18 16 0.37
19 17 0.40
20 6 0.14
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:74047133 original size:30 final size:30
Alignment explanation
Indices: 74047017--74047137 Score: 109
Period size: 30 Copynumber: 3.9 Consensus size: 30
74047007 TTTTTAACCT
* *
74047017 TATTTTTATATTATATATTATAATTATTTTA
1 TATTATTAT-TTATATATTATTATTATTTTA
*
74047048 TTATATATTATTTATATTATTATTATCTATTGTA
1 -TAT-TATTATTTATA-TATTATTAT-TATTTTA
* * *
74047082 TATTGTT-TTTCACAAATTATTATTATTTTA
1 TATTATTATTT-ATATATTATTATTATTTTA
* *
74047112 CATTATTACTTATATATTATTATTAT
1 TATTATTATTTATATATTATTATTAT
74047138 GTTTTTACTT
Statistics
Matches: 72, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
30 24 0.33
31 13 0.18
32 13 0.18
33 16 0.22
34 6 0.08
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (30 bp):
TATTATTATTTATATATTATTATTATTTTA
Found at i:74047467 original size:22 final size:21
Alignment explanation
Indices: 74047419--74047482 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 21
74047409 ATCATTAATT
*
74047419 ACTTATTTCATATTATTCTA-A
1 ACTTATTT-ATATTATTATATA
74047440 ACTTATATATATATTATTATATA
1 ACTTAT-T-TATATTATTATATA
*
74047463 A-TTATTT-TATTATTTTATA
1 ACTTATTTATATTATTATATA
74047482 A
1 A
74047483 ATTCTTTTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
19 12 0.32
20 1 0.03
21 7 0.18
22 15 0.39
23 3 0.08
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (21 bp):
ACTTATTTATATTATTATATA
Found at i:74047550 original size:17 final size:18
Alignment explanation
Indices: 74047530--74047589 Score: 54
Period size: 17 Copynumber: 3.4 Consensus size: 18
74047520 TTAAAAACCA
74047530 ATATATTTTTATT-TTTT
1 ATATATTTTTATTCTTTT
*
74047547 ATATAATTATTATTCTTTT
1 ATAT-ATTTTTATTCTTTT
* *
74047566 GTA-ATTTTT-TTGTTATT
1 ATATATTTTTATTCTT-TT
74047583 ATATATT
1 ATATATT
74047590 GTATATTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
16 4 0.12
17 13 0.38
18 11 0.32
19 6 0.18
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (18 bp):
ATATATTTTTATTCTTTT
Found at i:74053347 original size:23 final size:23
Alignment explanation
Indices: 74053286--74053351 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 23
74053276 CCTGATCAGT
* **
74053286 ATACGACACATAAAATGTAT-AA
1 ATACGACACATAAAGTGCCTGAA
** *
74053308 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
74053330 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
74053352 TCGGTAAAGC
Statistics
Matches: 33, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
21 12 0.36
22 4 0.12
23 17 0.52
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:74054427 original size:14 final size:14
Alignment explanation
Indices: 74054410--74054440 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
74054400 AGTAAAATAT
74054410 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
74054424 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
74054438 TTT
1 TTT
74054441 ACTTTTGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42
Consensus pattern (14 bp):
TTTCTGGAAAATGA
Found at i:74054623 original size:16 final size:15
Alignment explanation
Indices: 74054602--74054643 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
74054592 AGTTTATTTT
74054602 ATATATATTTATATAA
1 ATATATATTTA-ATAA
74054618 ATATATATATTAATAA
1 ATATATAT-TTAATAA
*
74054634 ATTTATATTT
1 ATATATATTT
74054644 TAAAATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 2 0.08
16 19 0.79
17 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATATATTTAATAA
Found at i:74054900 original size:46 final size:46
Alignment explanation
Indices: 74054847--74054935 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
74054837 AGAAATTAAT
* * *
74054847 AATATTATCCAAATGCATAATTAGTATTACACCGCATGATAACAAC
1 AATATTATCCAAATGCATAACTAATATTACACCACATGATAACAAC
*
74054893 AATATTATCCAAGTGCATAACTAATATTACACCACATGATAAC
1 AATATTATCCAAATGCATAACTAATATTACACCACATGATAAC
74054936 TAATATTACA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (46 bp):
AATATTATCCAAATGCATAACTAATATTACACCACATGATAACAAC
Found at i:74054921 original size:22 final size:22
Alignment explanation
Indices: 74054909--74054957 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
74054899 ATCCAAGTGC
74054909 ATAACTAATATTACACCACATG
1 ATAACTAATATTACACCACATG
74054931 ATAACTAATATTACACCACATG
1 ATAACTAATATTACACCACATG
74054953 ATAAC
1 ATAAC
74054958 AACAACATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.47, C:0.22, G:0.04, T:0.27
Consensus pattern (22 bp):
ATAACTAATATTACACCACATG
Found at i:74054955 original size:68 final size:68
Alignment explanation
Indices: 74054871--74054997 Score: 218
Period size: 68 Copynumber: 1.9 Consensus size: 68
74054861 GCATAATTAG
* *
74054871 TATTACACCGCATGATAACAACAATATTATCCAAGTGCATAACTAATATTACACCACATGATAAC
1 TATTACACCACATGATAACAACAACATTATCCAAGTGCATAACTAATATTACACCACATGATAAC
74054936 TAA
66 TAA
* *
74054939 TATTACACCACATGATAACAACAACATTGTCCAAGTGTATAACTAATATTACACCACAT
1 TATTACACCACATGATAACAACAACATTATCCAAGTGCATAACTAATATTACACCACAT
74054998 TAAAAGTATC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 55 1.00
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.27
Consensus pattern (68 bp):
TATTACACCACATGATAACAACAACATTATCCAAGTGCATAACTAATATTACACCACATGATAAC
TAA
Found at i:74059026 original size:26 final size:26
Alignment explanation
Indices: 74058997--74059104 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
74058987 TGGTACAAAT
74058997 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
74059023 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74059049 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
74059075 TGATAATGGTTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74059101 TGAT
1 TGAT
74059105 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74059607 original size:78 final size:78
Alignment explanation
Indices: 74059478--74059624 Score: 294
Period size: 78 Copynumber: 1.9 Consensus size: 78
74059468 GCCAAACAAA
74059478 TGAGCATGCATGTGCCTTAGATGCTAAGGGGAAAAATCGGCTAACATGTTGTGCTTTAAAATGAT
1 TGAGCATGCATGTGCCTTAGATGCTAAGGGGAAAAATCGGCTAACATGTTGTGCTTTAAAATGAT
74059543 GAAAGATTATACC
66 GAAAGATTATACC
74059556 TGAGCATGCATGTGCCTTAGATGCTAAGGGGAAAAATCGGCTAACATGTTGTGCTTTAAAATGAT
1 TGAGCATGCATGTGCCTTAGATGCTAAGGGGAAAAATCGGCTAACATGTTGTGCTTTAAAATGAT
74059621 GAAA
66 GAAA
74059625 TGGAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 69 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (78 bp):
TGAGCATGCATGTGCCTTAGATGCTAAGGGGAAAAATCGGCTAACATGTTGTGCTTTAAAATGAT
GAAAGATTATACC
Found at i:74059609 original size:39 final size:39
Alignment explanation
Indices: 74059488--74059609 Score: 92
Period size: 39 Copynumber: 3.1 Consensus size: 39
74059478 TGAGCATGCA
74059488 TGTGCCTTAGATGCTAAGGGGAAAAATCGGCTAACATGT
1 TGTGCCTTAGATGCTAAGGGGAAAAATCGGCTAACATGT
* * * * ** * *
74059527 TGTGCTTTAAAATGATGAA--AG-ATTATAC--CTGAGCATGCA
1 TGTGCCTT-AGATGCT-AAGGGGAAAAAT-CGGCT-AACATG-T
74059566 TGTGCCTTAGATGCTAAGGGGAAAAATCGGCTAACATGT
1 TGTGCCTTAGATGCTAAGGGGAAAAATCGGCTAACATGT
74059605 TGTGC
1 TGTGC
74059610 TTTAAAATGA
Statistics
Matches: 57, Mismatches: 16, Indels: 20
0.61 0.17 0.22
Matches are distributed among these distances:
37 4 0.07
38 13 0.23
39 23 0.40
40 13 0.23
41 4 0.07
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (39 bp):
TGTGCCTTAGATGCTAAGGGGAAAAATCGGCTAACATGT
Found at i:74060820 original size:27 final size:26
Alignment explanation
Indices: 74060771--74060875 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 26
74060761 AGGAAGCGTC
*
74060771 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
* *
74060798 CTGGTGGCTCTGCGACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
74060825 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* *
74060852 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
74060876 GCACCCTCGC
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 8 0.12
27 59 0.87
28 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:74062502 original size:14 final size:14
Alignment explanation
Indices: 74062483--74062510 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
74062473 ACAGATCCTA
74062483 GAGTTAATTAAAAT
1 GAGTTAATTAAAAT
74062497 GAGTTAATTAAAAT
1 GAGTTAATTAAAAT
74062511 AATCGTTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (14 bp):
GAGTTAATTAAAAT
Found at i:74066622 original size:23 final size:25
Alignment explanation
Indices: 74066596--74066644 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
74066586 GTTAGTCTAG
*
74066596 TAAAATTC-TTTTGTTTT-CAAAAT
1 TAAAATTCTTTTTCTTTTCCAAAAT
*
74066619 TAAATTTCTTTTTCTTTTCCAAAAT
1 TAAAATTCTTTTTCTTTTCCAAAAT
74066644 T
1 T
74066645 TTCCCCTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 7 0.32
24 8 0.36
25 7 0.32
ACGTcount: A:0.31, C:0.12, G:0.02, T:0.55
Consensus pattern (25 bp):
TAAAATTCTTTTTCTTTTCCAAAAT
Found at i:74068746 original size:18 final size:17
Alignment explanation
Indices: 74068702--74068747 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
74068692 TACACCAAAT
*
74068702 TGGGCGTGTGGGCCACA
1 TGGGCGTGTGAGCCACA
*
74068719 TAGGCGTGTGAGCCTACA
1 TGGGCGTGTGAGCC-ACA
*
74068737 TGGGCATGTGA
1 TGGGCGTGTGA
74068748 AATTTGGGCC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.17, C:0.20, G:0.41, T:0.22
Consensus pattern (17 bp):
TGGGCGTGTGAGCCACA
Found at i:74081131 original size:206 final size:206
Alignment explanation
Indices: 74080769--74083385 Score: 4284
Period size: 206 Copynumber: 12.7 Consensus size: 206
74080759 GCAGATCTGG
* *
74080769 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
* * * * * *
74080834 GATTTGGCTTTCACGTGCTTTCGATGAAGCAAATCTAAGATGATTTGGCATCTCTCTATTGTCAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * *
74080899 AGAATAAATTGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
74080964 CAGATGATTAGA
195 CAGATGATTAGA
*
74080976 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATATCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
74081041 ATTTGGTTTTCGCTTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
74081106 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74081171 AGATGATTAGA
196 AGATGATTAGA
* * * *
74081182 CTGAAGTAGATCCAAGATGGTTTGTTATCCTTGTACTTACAAGGAGCAAATTGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* * * * * *
74081247 ATTTGGCTTTCACGTGCTTTCGATGAAGTAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
** * * ** *
74081312 GAACAAATCGAAGTTTGGCGTCTTTATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTT
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
* *
74081377 AGATGTTTATA
196 AGATGATTAGA
* * * * * *
74081388 CTGAAGCAGATCCAAGATGATTTGGCATCCTTTTGTTTACAAGGAACAAATC-AAAATCATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGA-CATAGCT
* * ** * * *
74081452 GATTTAGCTTTCATGTACTTACGCTGAAGCAAGTCTAAGATGATTTGACATCTCTGTATTGTTAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * * * * *
74081517 AGAATAAATCAAAGTTTAGCATCTCCATATTCGATGGAGGGTAGACATATAGCTGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
74081582 CAGATGATTAGA
195 CAGATGATTAGA
* * *
74081594 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGAAAGCAAATCGAAGATATAGTT
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAG-GAGCAAATCGAAGACATAGCT
74081659 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
74081724 AGAACAAATCGAATTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGTAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
74081789 CAGATGATTAGA
195 CAGATGATTAGA
*
74081801 CTGAAGTAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
74081866 ATTTGGTTTTAGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
74081931 GAACAAATCGATGTTTGGCGTCTCCATATTCAACAGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74081996 AGATGATTAGA
196 AGATGATTAGA
*
74082007 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTATGCTTACAAGGAAGCAAATCGAAGACATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGG-AGCAAATCGAAGACATAGCT
* *
74082072 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGTTAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
74082137 TGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
74082202 CAGATGATTAGA
195 CAGATGATTAGA
*
74082214 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTATGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
74082279 ATATGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * *
74082344 GAACAAATCGAAGTTTGGCATTTTCATATTCGACAGAGGGTAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74082409 AGATGATTAGA
196 AGATGATTAGA
74082420 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
74082485 ATTTGGTTTTCGCGTGCTTACGCTGAAGTAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
74082550 GAACAAATTGAAGTTTGGTGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74082615 AGATGATTAGA
196 AGATGATTAGA
*
74082626 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAATGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
74082691 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * *
74082756 GAACAAATCAAATTTTGGCGTTTCCATATTCTACGGAGGGCAGAAACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74082821 AGATGATTAGA
196 AGATGATTAGA
74082832 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
74082897 ATTTGGCTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
74082962 GAACAAATCGAAGTTTGTCGTCTCCATATTCTACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74083027 AGATGATTAGA
196 AGATGATTAGA
* * *
74083038 ATGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATTGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* * *
74083103 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTGAGATGATTTGGCATCTTTGTATTTTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
74083168 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74083233 AGATGATTAGA
196 AGATGATTAGA
* *
74083244 GTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* * * *
74083309 ATTTGGTTTGTC-TGTGCTTACGTTGAAGCAAATCTAACATGATTTGGCATCTCTGTATTGTCAG
66 ATTTGGTTT-TCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
74083373 AGAACAAATCGAA
130 AGAACAAATCGAA
74083386 TAAGCAGATT
Statistics
Matches: 2236, Mismatches: 169, Indels: 11
0.93 0.07 0.00
Matches are distributed among these distances:
205 3 0.00
206 1843 0.82
207 387 0.17
208 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:74085104 original size:12 final size:11
Alignment explanation
Indices: 74085089--74085160 Score: 54
Period size: 12 Copynumber: 6.2 Consensus size: 11
74085079 TATTTTTTTA
74085089 TTATCATATATT
1 TTAT-ATATATT
* **
74085101 TTATCTATAAA
1 TTATATATATT
74085112 TTATATAATATT
1 TTATAT-ATATT
* *
74085124 GTATATCTTATT
1 TTATAT-ATATT
*
74085136 TTATATATTTCT
1 TTATATATAT-T
74085148 TTATATATATT
1 TTATATATATT
74085159 TT
1 TT
74085161 TTAAAATTGT
Statistics
Matches: 45, Mismatches: 13, Indels: 5
0.71 0.21 0.08
Matches are distributed among these distances:
11 14 0.31
12 31 0.69
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (11 bp):
TTATATATATT
Found at i:74085610 original size:21 final size:21
Alignment explanation
Indices: 74085586--74085626 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74085576 TCTCTTATAT
*
74085586 TTTTATATATTATTTATTTTG
1 TTTTATATACTATTTATTTTG
*
74085607 TTTTTTATACTATTTATTTT
1 TTTTATATACTATTTATTTT
74085627 ACCATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTTATATACTATTTATTTTG
Found at i:74089962 original size:35 final size:34
Alignment explanation
Indices: 74089914--74090062 Score: 124
Period size: 33 Copynumber: 4.4 Consensus size: 34
74089904 AATTATTCAA
*
74089914 ATGTAAGACCATAGTTGGACTATGGCAGTGTTTAT
1 ATGTAAGACCATAGTTGGACTATGGCA-TGTTTAG
* ** *
74089949 ATGTAAGATCATAGTTGGGGTATGGCAT-TCT-G
1 ATGTAAGACCATAGTTGGACTATGGCATGTTTAG
* ** * * *
74089981 ATGATAAGACCATAATTGGGTTATGGCA-CTATGG
1 ATG-TAAGACCATAGTTGGACTATGGCATGTTTAG
* * *
74090015 ATGTAAGACCATGGTTGGACCATGGCAGTGTTTAT
1 ATGTAAGACCATAGTTGGACTATGGCA-TGTTTAG
74090050 ATGTAAGACCATA
1 ATGTAAGACCATA
74090063 ACTAGGCTAT
Statistics
Matches: 90, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
32 3 0.03
33 44 0.49
34 5 0.06
35 38 0.42
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.32
Consensus pattern (34 bp):
ATGTAAGACCATAGTTGGACTATGGCATGTTTAG
Found at i:74094018 original size:56 final size:56
Alignment explanation
Indices: 74093932--74094064 Score: 212
Period size: 56 Copynumber: 2.4 Consensus size: 56
74093922 ATGGCATCGA
* * **
74093932 TATATGTGTGTGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTTGT
1 TATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTCCGT
**
74093988 TATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGTGTCGATATGTGACTCCGT
1 TATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTCCGT
74094044 TATATGTGTGCGAGTAAGACC
1 TATATGTGTGCGAGTAAGACC
74094065 CTGTCTGGGA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 71 1.00
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTCCGT
Found at i:74094087 original size:56 final size:56
Alignment explanation
Indices: 74093932--74094093 Score: 184
Period size: 56 Copynumber: 2.9 Consensus size: 56
74093922 ATGGCATCGA
* * * * **
74093932 TATATGTGTGTGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTTGT
1 TATATGTGTGCGAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACTCCGT
* * **
74093988 TATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGTGTCGATATGTGACTCCGT
1 TATATGTGTGCGAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACTCCGT
**
74094044 TATATGTGTGCGAGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGA
1 TATATGTGTGCGAGTAAGACCAC-GTCTAAGAC-GTTGGCATCGATATGTGA
74094094 TTACAAGTAA
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
55 1 0.01
56 90 0.98
57 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACTCCGT
Found at i:74096242 original size:40 final size:40
Alignment explanation
Indices: 74096147--74096365 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
74096137 CCAAGCCAAG
* * *
74096147 TGCCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AA
1 TGCCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAA
* *
74096185 TGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
* *
74096225 TGCCTTTGGGACTTAGCCCGGATATAGTAGCTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
* *
74096265 TGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
* * *
74096305 TGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAA
1 TGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAA
74096345 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGACTTAGCCCGG
74096366 TTATCATCCG
Statistics
Matches: 160, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
38 14 0.09
39 17 0.11
40 129 0.81
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
Found at i:74098593 original size:14 final size:15
Alignment explanation
Indices: 74098574--74098629 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
74098564 AATCTTCAAT
74098574 GATATG-CAATCTTA
1 GATATGACAATCTTA
74098588 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
74098605 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
74098623 GATATGA
1 GATATGA
74098630 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:74098618 original size:35 final size:37
Alignment explanation
Indices: 74098572--74098650 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
74098562 ATAATCTTCA
74098572 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
74098608 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
74098644 A-GATATG
1 ATGATATG
74098651 ATTTGTAATC
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:74098652 original size:22 final size:19
Alignment explanation
Indices: 74098572--74098643 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
74098562 ATAATCTTCA
74098572 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74098591 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74098608 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74098626 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
74098644 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:74098660 original size:22 final size:21
Alignment explanation
Indices: 74098604--74098678 Score: 75
Period size: 22 Copynumber: 3.7 Consensus size: 21
74098594 ATACAATCTT
*
74098604 AGATATGA-TTGCAATCTT--
1 AGATATGATTTGTAATCTTAG
* *
74098622 AGATATGATATGCAATCTTAG
1 AGATATGATTTGTAATCTTAG
74098643 AAGATATGATTTGTAATCTTAG
1 -AGATATGATTTGTAATCTTAG
* *
74098665 AGATTTAATTTGTA
1 AGATATGATTTGTA
74098679 GATACCTTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
18 8 0.17
19 9 0.19
21 12 0.25
22 19 0.40
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.40
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAG
Found at i:74098675 original size:21 final size:22
Alignment explanation
Indices: 74098635--74098678 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
74098625 TATGATATGC
*
74098635 AATCTTAGAAGATATGATTTGT
1 AATCTTAGAAGATATAATTTGT
*
74098657 AATCTTAG-AGATTTAATTTGT
1 AATCTTAGAAGATATAATTTGT
74098678 A
1 A
74098679 GATACCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (22 bp):
AATCTTAGAAGATATAATTTGT
Found at i:74110812 original size:78 final size:78
Alignment explanation
Indices: 74110683--74110978 Score: 423
Period size: 78 Copynumber: 3.8 Consensus size: 78
74110673 TGAAGAAACA
* * * * * *
74110683 GATTTGGTATCTCTATATTCGACGGAGCGCAGATCGAAGACATAGCAGATCTGACATTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
74110748 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
74110761 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTAAAGACACAGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
74110826 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
74110839 GATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCT-GACCTTCATTGA
74110903 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * * *
74110917 AATTTGGCATCTCTGTATTAGACTGGGAGCTGATCAAAGACATAGCAGATCTGACCTTCATT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATT
74110979 TGTTTACATC
Statistics
Matches: 193, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
77 1 0.01
78 191 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:74111162 original size:89 final size:89
Alignment explanation
Indices: 74111010--74111173 Score: 265
Period size: 89 Copynumber: 1.8 Consensus size: 89
74111000 AAGATGACAT
* *
74111010 ATTTGGCATCTCTGTATTAGACGAGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAG
1 ATTTGGCATCTCTGTATTAGACGAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATATTAG
74111075 ACGGGGAGCAAATTGAAAAAGCAG
66 ACGGGGAGCAAATTGAAAAAGCAG
* * * * *
74111099 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATTGAAGATAACAGATTTGGCGTCTCTATATTAG
1 ATTTGGCATCTCTGTATTAGACGAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATATTAG
74111164 ACGGGGAGCA
66 ACGGGGAGCA
74111174 GATCAAAGAT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 68 1.00
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (89 bp):
ATTTGGCATCTCTGTATTAGACGAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATATTAG
ACGGGGAGCAAATTGAAAAAGCAG
Found at i:74111174 original size:45 final size:45
Alignment explanation
Indices: 74110991--74111190 Score: 251
Period size: 45 Copynumber: 4.5 Consensus size: 45
74110981 TTTACATCGA
* * * *
74110991 AGCAGATCCAAGATGACATATTTGGCATCTCTGTATTAGACGAGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
74111036 AGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
74111081 AGCAAATTGAA-A-AAGCAGATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAA-CAGATTTGGCATCTCTGTATTAGACGGGG
* * *
74111125 AGCAGATTGAAGATAACAGATTTGGCGTCTCTATATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
74111170 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCGAAGATAACAGAT
74111191 ATCGCCTTCC
Statistics
Matches: 138, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
43 2 0.01
44 39 0.28
45 95 0.69
46 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:74111552 original size:17 final size:17
Alignment explanation
Indices: 74111543--74111609 Score: 89
Period size: 17 Copynumber: 3.8 Consensus size: 17
74111533 CTTCAATGAT
74111543 ATGCAATCTTAGATATG
1 ATGCAATCTTAGATATG
* *
74111560 ATACAATCTTAAATATG
1 ATGCAATCTTAGATATG
74111577 ATTGCAATCTTAGATATG
1 A-TGCAATCTTAGATATG
74111595 ATATGCAATCTTAGA
1 --ATGCAATCTTAGA
74111610 AGATATGATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
17 16 0.37
18 14 0.33
19 12 0.28
20 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (17 bp):
ATGCAATCTTAGATATG
Found at i:74111584 original size:35 final size:37
Alignment explanation
Indices: 74111538--74111607 Score: 117
Period size: 35 Copynumber: 1.9 Consensus size: 37
74111528 ATAATCTTCA
74111538 ATGATATGCAATCTTAGATATGATA-CAATCTTAAAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAAAT
74111574 ATGAT-TGCAATCTTAGATATGATATGCAATCTTA
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTA
74111608 GAAGATATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
35 19 0.59
36 5 0.16
37 8 0.25
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAAAT
Found at i:74111616 original size:17 final size:19
Alignment explanation
Indices: 74111538--74111609 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
74111528 ATAATCTTCA
74111538 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
74111557 ATGATA--CAATCTTAAAT
1 ATGATATGCAATCTTAGAT
74111574 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74111592 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
74111610 AGATATGATT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 15 0.31
18 15 0.31
19 18 0.38
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:74116438 original size:29 final size:28
Alignment explanation
Indices: 74116372--74116540 Score: 184
Period size: 29 Copynumber: 5.9 Consensus size: 28
74116362 TACATACATG
* *
74116372 CATATGGCCCACTAGGCCCAATCTCA-TT
1 CATATGGCCCATTCGGCCCAAT-TCACTT
*
74116400 TATATGGCCCATTCGGCCCAATTCACGTT
1 CATATGGCCCATTCGGCCCAATTCAC-TT
74116429 CATATGGCCCA-TCAGGCCCAATTCACGTT
1 CATATGGCCCATTC-GGCCCAATTCAC-TT
74116458 CATATGGCCCA-TCAGGCCCAATTCACATT
1 CATATGGCCCATTC-GGCCCAATTCAC-TT
*
74116487 CATATGGCCCATTAGGCCCAATCTCA-TT
1 CATATGGCCCATTCGGCCCAAT-TCACTT
* * *
74116515 TATATGGCCCATCCGGCCCAAATCAC
1 CATATGGCCCATTCGGCCCAATTCAC
74116541 ATTATATTCA
Statistics
Matches: 125, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
27 6 0.05
28 41 0.33
29 74 0.59
30 4 0.03
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.25
Consensus pattern (28 bp):
CATATGGCCCATTCGGCCCAATTCACTT
Found at i:74116480 original size:58 final size:56
Alignment explanation
Indices: 74116367--74116547 Score: 242
Period size: 57 Copynumber: 3.2 Consensus size: 56
74116357 ACCCCTACAT
*
74116367 ACATGCATATGGCCCA-CTAGGCCCAATCTCATTTATATGGCCCATTCGGCCCAATTC
1 ACATTCATATGGCCCATC-AGGCCCAATCTCATTTATATGGCCCA-TCGGCCCAATTC
* *
74116424 ACGTTCATATGGCCCATCAGGCCCAAT-TCACGTTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATCTCA--TTTATATGGCCCATC-GGCCCAATTC
* *
74116482 ACATTCATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAATCTCATTTATATGGCCCAT-CGGCCCAATTC
74116539 ACATT-ATAT
1 ACATTCATAT
74116548 TCATGCTCAC
Statistics
Matches: 111, Mismatches: 7, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
56 7 0.06
57 52 0.47
58 49 0.44
59 3 0.03
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (56 bp):
ACATTCATATGGCCCATCAGGCCCAATCTCATTTATATGGCCCATCGGCCCAATTC
Found at i:74116639 original size:18 final size:18
Alignment explanation
Indices: 74116616--74116651 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
74116606 TGGGCCCAAC
74116616 AGCCCA-TCAGACCCATTT
1 AGCCCATTCA-ACCCATTT
74116634 AGCCCATTCAACCCATTT
1 AGCCCATTCAACCCATTT
74116652 GGTCTATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.28, C:0.39, G:0.08, T:0.25
Consensus pattern (18 bp):
AGCCCATTCAACCCATTT
Found at i:74116779 original size:16 final size:16
Alignment explanation
Indices: 74116758--74116816 Score: 91
Period size: 16 Copynumber: 3.7 Consensus size: 16
74116748 GTAGCCAAAC
74116758 TTTCGACTTTTCGGCA
1 TTTCGACTTTTCGGCA
*
74116774 TTTCGACTTTTCAGCA
1 TTTCGACTTTTCGGCA
*
74116790 TTTCAACTTTTCGGCA
1 TTTCGACTTTTCGGCA
*
74116806 TTTCGGCTTTT
1 TTTCGACTTTT
74116817 GCCGATCTAC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.14, C:0.24, G:0.15, T:0.47
Consensus pattern (16 bp):
TTTCGACTTTTCGGCA
Found at i:74120302 original size:593 final size:593
Alignment explanation
Indices: 74117137--74121891 Score: 8137
Period size: 592 Copynumber: 8.0 Consensus size: 593
74117127 GAGGAATACT
* * *
74117137 TACCAATACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATCCAAGATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
74117202 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATC-GATATTAACAATACTAG
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAG-TATTAACAATACTAG
* *
74117266 CTGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTTGACTTTTCAG
130 CCGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAG
* *
74117331 CTTTTAAACTAATATGGTGTATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGGCAGAAGAATG
195 CTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATT--A-AAG-A----AGAAG---G
* * *
74117396 AATCGGCTAACCCAAAGGATAAATCAAAAGAGATCCGACGAGAGAAAGAATGGCAAAAGAATCAG
249 AATCGGCTAACCCAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAG
74117461 CTAGCAAAGATGGAAAAGCCAATCGACACTAT-AAAAAATGAAGAATTTGGCATTAGCCTAGGAT
314 CTAGCAAAGATGGAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGAT
* *
74117525 CCCAAACTCAGCACATATTTACAGCCTATAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCT
379 CCCAAACTCAGCACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCT
* ** *
74117590 CCGTCACTTCCTTCTTCTCATCTCCTCATTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAA
444 CCATCACTTCCCCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAA
74117655 TTTTCTCTTCTGAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCA
509 TTTTCTCTTCTGAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCA
74117720 AAATTAAACTCCTAAAAAAA
574 AAATTAAACTCCTAAAAAAA
*
74117740 TACCAAAACTGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
74117805 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
* *
74117870 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATTGGCCCAAGGGAGATTCGACTTTTTAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
*
74117935 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCAAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
*
74118000 CAAAGGGTAAATCAAAATAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
*
74118065 GAAAAGCCAATCGACATTATAAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAG
326 GAAAAGCCAATCGACACTAT-AAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAG
74118130 CACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAG--CCATCACTTCC
390 CACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCC
*
74118193 CCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTACTAAATTTTCTCTTCT
455 CCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCT
*
74118258 GAACACTCCCCTTAGAGTCCATCTTCACACCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTC
520 GAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTC
74118323 CTAAAAAAA
585 CTAAAAAAA
* *
74118332 TACCAAAACCGAAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGACATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
* *
74118397 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAAGGGAGTAATTAGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
*
74118462 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATTGGCCCAAGGGAGATTCGACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
74118527 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
* * * *
74118592 CAAAGGGTAAATCAAAAGAGATCTGAAGAGAGAAAGAATGGAAAAAGAATCAGGTAGCAAAAATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
*
74118657 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTTAGC
326 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
*
74118722 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTACCAATTCAGCTCCATCACTTCCC
391 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
74118787 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
456 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
*
74118852 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAAGCCAAAATTAAACTCC
521 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
74118917 TAAAAAAA
586 TAAAAAAA
* * *
74118925 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTAGACATTTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
* * *
74118990 ATTCCCTACCAAATTTGATT-AAAAAGAGTGAGGGAGGGAAGTAATCGGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
*
74119054 CAAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
*
74119119 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGACTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
* *
74119184 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGAAAAAGAATCAGCTAGTAAAGATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
*
74119249 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACACAGC
326 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
* * *
74119314 ACATATTTAGAGCCTCTAGCCAACTTGCCTAACCCTCAACTCCCAATTCAGTTCCATCACTTCCC
391 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
* * *
74119379 TCTTCTCGTCTCCTCGTTTTTCTCCCTGATAACTCCTCAATCTATTTCCTAAATTTTCTCTTCTG
456 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
*
74119444 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCTAAAATTAAACTCC
521 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
74119509 TAAGAAAAA
586 TAA-AAAAA
* * * * *
74119518 TACCAAAATCGCAAAACACCTAAGGAGCAATTCAACTGATAGCTAAAA-TCTGAGATCTGATGCT
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTC-GAGATCTGATACT
* * *
74119582 AATTCCCTACCAAAGTTGATTAAAAAATAGTGAGGGAGGGCAGTAATCAGCATTAACAATACTAG
65 AATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAG
* *
74119647 CCGAAAAAGAGATAAGGTACTTACCCCAAAAAAGTAATCGGCCCAAGGGAGATTCTACTTTTCAG
130 CCGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAG
*
74119712 CTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAG-AGGAATCGACTAAC
195 CTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAAC
*
74119776 CCAAAGGGTAAATCAAAAGAGATCTGAAGAGAGAAAGAATGGCAAAAGAATCAG-TAAGCAAAGA
260 CCAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCT-AGCAAAGA
* *
74119840 TGGAAAAGCCAATCGACACTATAAAAAAAAAGAAGAATTTGGCATTAGCCTAGGATCCCAAACTT
324 TGGAAAAGCCAATCGACACTAT-AAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTC
*
74119905 AGTACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTT
388 AGCACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTT
*
74119970 CCCTCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTT
453 CCCCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTT
*
74120035 CTAAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAAC
518 CTGAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAAC
74120100 TCCTAAAAAAA
583 TCCTAAAAAAA
* * * * **
74120111 TACCAAAACCACAAAACACCTAAGAAGCAATTCAATAGAGAGCTAAAATTTTAGATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
* *
74120176 ATACCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGCAGTAATCAGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
74120241 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
*
74120306 TTTCAAACTAATATGGTGAATATGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
*
74120371 CAAAGGGTAAATCAAAATAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
* *
74120436 GAAAAGCCAATAGACACTAT-AAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTTAGC
326 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
*
74120500 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTACCAATTCAGCTCCATCACTTCCC
391 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
* * *
74120565 CCTTCTCATCTCCTCGTTTTTCTCGCTGATAACTTCTCAATCTATTTCCTAAATTTTCTCTTCTG
456 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
74120630 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
521 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
74120695 TAAAAAAA
586 TAAAAAAA
* * *
74120703 TACCAAAACCGCAAAATACCTAATGAGCAATTCGACAGAGAGCTAAAATTCGACATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
* * *
74120768 ATTCCCAACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAATAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
* *
74120833 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGACCCAAGGGAG-TTTGACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
*
74120897 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATTGGCTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
* * * *
74120962 CAAAGAGTAAATCAAAAGAGATTTGAAGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAAATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
*
74121027 GAAAAGCTAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
326 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
*
74121092 ACATATTTAGAGCCTTTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
391 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
*
74121157 CCTTCTTATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
456 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
*
74121222 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCA
521 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
74121287 TAAAAAAA
586 TAAAAAAA
* * * *
74121295 TACCAAAACCGTAAAACACCTAAGGAGCAATTCGATAGAGAGCTAAAATTCGATATTTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
* **
74121360 ATTCCTTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATTGGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
**
74121425 CGAAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGAACCAAGGGAGATTCGACTTTTCAG
131 CG-AAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAG
74121490 CTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAAC
195 CTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAAC
*
74121555 CCAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCCGCTAGCAAAGAT
260 CCAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGAT
* * *
74121620 GGAAAAGCCAATCGACACTA-AAAAAAATAAAGAATTTGGAATTAGCCTAGGACCCCAAACTCAG
325 GGAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAG
* * *
74121684 CACATATTTAGAGCCTCTAGCCAAATTGTCTGACCCTCAATTCCCAATTCTGCTCCATCACTTCC
390 CACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCC
* *
74121749 CCCTTCTCATCTTCTCATTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCT
455 CCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCT
* *
74121814 GAACACTCCCTTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATCAAACTC
520 GAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTC
*
74121879 CTTAGAAAAA
585 C-TAAAAAAA
74121889 TAC
1 TAC
74121892 TAAGCTAGGA
Statistics
Matches: 3944, Mismatches: 191, Indels: 43
0.94 0.05 0.01
Matches are distributed among these distances:
591 248 0.06
592 1815 0.46
593 908 0.23
594 736 0.19
595 6 0.00
599 1 0.00
600 3 0.00
601 1 0.00
603 225 0.06
604 1 0.00
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.24
Consensus pattern (593 bp):
TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGAGATCTGATACTA
ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAACC
CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
TAAAAAAA
Found at i:74133962 original size:19 final size:19
Alignment explanation
Indices: 74133934--74134031 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
74133924 AATCTTTAAG
*
74133934 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
74133953 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
74133972 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
74133989 GTTATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
74134008 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
74134029 GAT
1 GAT
74134032 CTTGTAATCT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
17 15 0.21
19 46 0.66
21 9 0.13
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:74133977 original size:36 final size:36
Alignment explanation
Indices: 74133937--74134031 Score: 136
Period size: 36 Copynumber: 2.5 Consensus size: 36
74133927 CTTTAAGGAT
74133937 ATACAATCTTAGATATGATATGCAATATTAGATATG
1 ATACAATCTTAGATATGATATGCAATATTAGATATG
* *
74133973 ATACAATCTTAGATATGTTATGCAATCTTAGATATG
1 ATACAATCTTAGATATGATATGCAATATTAGATATG
74134009 ATATGCAATCTTGAAGATATGAT
1 ATA--CAATCTT--AGATATGAT
74134032 CTTGTAATCT
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
36 37 0.71
38 7 0.13
40 8 0.15
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (36 bp):
ATACAATCTTAGATATGATATGCAATATTAGATATG
Found at i:74138843 original size:16 final size:15
Alignment explanation
Indices: 74138822--74138880 Score: 75
Period size: 16 Copynumber: 3.9 Consensus size: 15
74138812 CTATTTCAAA
74138822 AAAAAAGGAAAAAGAG
1 AAAAAAGGAAAAA-AG
*
74138838 AAAAAAAG-AAAAAG
1 AAAAAAGGAAAAAAG
74138852 AAAAAAGAGAAAAAAG
1 AAAAAAG-GAAAAAAG
*
74138868 GAAAAAGGAAAAA
1 AAAAAAGGAAAAA
74138881 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
14 8 0.21
15 11 0.29
16 19 0.50
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AAAAAAGGAAAAAAG
Found at i:74138856 original size:23 final size:23
Alignment explanation
Indices: 74138819--74138880 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
74138809 CTTCTATTTC
74138819 AAAA-AAAAAGGAAAAAGAGAAA
1 AAAAGAAAAAGGAAAAAGAGAAA
*
74138841 AAAAGAAAAAGAAAAAAGAGAAA
1 AAAAGAAAAAGGAAAAAGAGAAA
*
74138864 AAAGGAAAAAGGAAAAA
1 AAAAGAAAAAGGAAAAA
74138881 TGGAGAGGCC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 4 0.11
23 32 0.89
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (23 bp):
AAAAGAAAAAGGAAAAAGAGAAA
Found at i:74138872 original size:6 final size:7
Alignment explanation
Indices: 74138823--74138880 Score: 62
Period size: 7 Copynumber: 7.7 Consensus size: 7
74138813 TATTTCAAAA
74138823 AAAAAGG
1 AAAAAGG
74138830 AAAAAGAG
1 AAAAAG-G
*
74138838 AAAAAAAG
1 -AAAAAGG
*
74138846 AAAAAGA
1 AAAAAGG
74138853 AAAAAGAG
1 AAAAAG-G
74138861 AAAAAAGG
1 -AAAAAGG
74138869 AAAAAGG
1 AAAAAGG
74138876 AAAAA
1 AAAAA
74138881 TGGAGAGGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
7 29 0.67
8 3 0.07
9 11 0.26
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (7 bp):
AAAAAGG
Found at i:74139885 original size:43 final size:43
Alignment explanation
Indices: 74139838--74140145 Score: 218
Period size: 43 Copynumber: 7.3 Consensus size: 43
74139828 TACCTTAATC
*
74139838 CCCTAAGCAGTTGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* ** * * *
74139881 CCCTAAGCAGTAGTGG-AGCAAATCGAAGA-CT-C-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATCT
74139922 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * * ** *
74139965 CCCTAAGCAATAGTGG-AGCAGATCGAAAACT-C-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAAATTTGCAGATCTT-ATCT
74140006 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * *
74140049 CCCTAAGCAGTAGTGG-AGCAGATTGAAGA-CT-C-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGTT-AA-ATTTGCAGATCTT-ATCT
* *
74140090 CCCTAAGCGGTAGGGTAACAGGTTAAATTTGTAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
74140133 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
74140146 TAGAGCAGAT
Statistics
Matches: 199, Mismatches: 38, Indels: 56
0.68 0.13 0.19
Matches are distributed among these distances:
39 2 0.01
40 16 0.08
41 63 0.32
42 24 0.12
43 76 0.38
44 16 0.08
45 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
Found at i:74139971 original size:84 final size:84
Alignment explanation
Indices: 74139830--74140437 Score: 905
Period size: 84 Copynumber: 7.3 Consensus size: 84
74139820 AAATTCAGTA
*
74139830 CCTTAATCCCCTAAGCAGTTGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
74139895 GGAGCAAATCGAAGACTCG
66 GGAGCAGATCGAAGACTCG
*
74139914 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAATAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
74139979 GGAGCAGATCGAAAACTCG
66 GGAGCAGATCGAAGACTCG
74139998 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
74140063 GGAGCAGATTGAAGACTCG
66 GGAGCAGATCGAAGACTCG
* *
74140082 CCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
74140147 AGAGCAGATCGAAGACTCA
66 GGAGCAGATCGAAGACTCG
* * *
74140166 CCTTAATCCCCTAAGTAGTAGGGTAACAGG-----TTCG-AGATCTTATCTCCCTAAGCAGTAGC
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
74140225 GGAGCAGATCGACGACGACTCG
66 GGAGCAGATCGA--A-GACTCG
74140247 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
74140312 GGAGCAGATCGAAGAC-CTG
66 GGAGCAGATCGAAGACTC-G
* *
74140331 CCTTAGTCCCCT-AGACAGTAGGCTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTAG
1 CCTTAATCCCCTAAG-CAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* * *
74140393 CGGAGCAGATCGACGACGATGCA
65 TGGAGCAGATCGAAGAC--T-CG
74140416 CCTTAA-CCCCTTAAGCAGTAGG
1 CCTTAATCCCC-TAAGCAGTAGG
74140438 CTCCAAGATG
Statistics
Matches: 480, Mismatches: 27, Indels: 33
0.89 0.05 0.06
Matches are distributed among these distances:
78 35 0.07
79 3 0.01
80 1 0.00
81 34 0.07
82 29 0.06
83 3 0.01
84 319 0.66
85 14 0.03
86 6 0.01
87 36 0.08
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (84 bp):
CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
GGAGCAGATCGAAGACTCG
Found at i:74140310 original size:43 final size:43
Alignment explanation
Indices: 74140255--74140392 Score: 114
Period size: 41 Copynumber: 3.3 Consensus size: 43
74140245 CGCCTTAATC
74140255 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * **
74140298 CCCTAAGCAGTAGTGG-AGCAGATCGAAGACCTGC----CTTAGTC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTTA-TCT
*
74140339 CCCT-AGACAGTAGGCTAACAGGTTAAATTTGCAGATCTTA--T
1 CCCTAAG-CAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
74140380 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
74140393 CGGAGCAGAT
Statistics
Matches: 72, Mismatches: 11, Indels: 26
0.66 0.10 0.24
Matches are distributed among these distances:
39 4 0.06
40 5 0.07
41 29 0.40
42 4 0.06
43 22 0.31
44 4 0.06
45 4 0.06
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
Found at i:74141204 original size:19 final size:19
Alignment explanation
Indices: 74141180--74141258 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
74141170 AATCTTTAAG
74141180 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
74141199 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
74141218 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
74141235 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
74141256 GAT
1 GAT
74141259 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
21 9 0.17
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:74141227 original size:36 final size:37
Alignment explanation
Indices: 74141186--74141258 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 37
74141176 TAAGGATATG
74141186 CAATCTTAGATATGATATGCAATATT-AGATATGATA
1 CAATCTTAGATATGATATGCAATATTAAGATATGATA
*
74141222 CAATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 CAATCTTAGATATGATATGCAATATT-AAGATATGAT
74141259 CTTGTAATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
38 9 0.26
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.36
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATATTAAGATATGATA
Found at i:74142728 original size:19 final size:19
Alignment explanation
Indices: 74142704--74142795 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
74142694 ATAATCTTCA
74142704 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
74142723 ATGATATGCAATCCTAGAT
1 ATGATATGCAATCTTAGAT
74142742 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74142761 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74142778 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
74142796 AGATATGATT
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
17 17 0.25
19 52 0.75
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:74142761 original size:14 final size:15
Alignment explanation
Indices: 74142744--74142781 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
74142734 TCCTAGATAT
74142744 GATATG-CAATCTTA
1 GATATGACAATCTTA
74142758 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
74142775 GATATGA
1 GATATGA
74142782 TATGCAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:74142778 original size:36 final size:37
Alignment explanation
Indices: 74142704--74142795 Score: 159
Period size: 36 Copynumber: 2.5 Consensus size: 37
74142694 ATAATCTTCA
74142704 ATGATATGCAATCTTAGATATGATATGCAATCCTAGAT
1 ATGATATGCAATCTTAGATATGATA-GCAATCCTAGAT
*
74142742 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCCTAGAT
74142778 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
74142796 AGATATGATT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
36 28 0.53
38 25 0.47
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCCTAGAT
Found at i:74142821 original size:22 final size:22
Alignment explanation
Indices: 74142704--74142818 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
74142694 ATAATCTTCA
74142704 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
74142723 ATGATATGCAATCCT---AGAT
1 ATGATATGCAATCTTAGAAGAT
74142742 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
74142761 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
74142778 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
74142800 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
74142819 GATTTAATTT
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
17 17 0.20
19 49 0.57
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:74143110 original size:18 final size:17
Alignment explanation
Indices: 74143087--74143120 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
74143077 TTTCCCGGAT
*
74143087 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
74143105 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
74143121 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:74151317 original size:89 final size:87
Alignment explanation
Indices: 74151188--74151349 Score: 191
Period size: 89 Copynumber: 1.8 Consensus size: 87
74151178 ATTCGACGGA
* * * *
74151188 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTATATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACAC-T-GAAGCAGATCCAAGATG
74151253 ATTTGGCATCCTTACGTTGACAAG
64 ATTTGGCATCCTTACGTTGACAAG
* * ** * * *
74151277 GAGCAGATCGAAGACATAGTAGATTTGGCTTTCACG-TGTTTACGCTGAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTC-CGATGTTTACACTGAAGCAGATCCAAGATGA
74151341 TTTGGCATC
65 TTTGGCATC
74151350 TCTGTACTAT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
87 24 0.39
88 1 0.02
89 35 0.57
90 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTACGTTGACAAG
Found at i:74151521 original size:78 final size:78
Alignment explanation
Indices: 74151382--74151755 Score: 448
Period size: 78 Copynumber: 4.6 Consensus size: 78
74151372 CGAAGAAACA
* ** * * * *
74151382 GATTTAGCATCTCCATATTCGACGGAGAGCAGATTGAAGACATAACATATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
74151447 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * ** *
74151460 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGTAGATCTGACCATCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
74151525 GCAGATCCAAGAT
66 GCAGATCCAAGAT
74151538 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGAACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTG-ACCTTCATTGA
74151602 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
74151616 GATTTGGCATCTCTGTATTAGACAGTGAGCAGATCGAAGACATAACAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCA-----
74151681 TTACATCGAAGCAGATCCAAGAT
61 -T---T-GAAGCAGATCCAAGAT
* *
74151704 GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG--GAGATAACAGAT
1 ----GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT
74151756 TTGGCATCTC
Statistics
Matches: 257, Mismatches: 23, Indels: 20
0.86 0.08 0.07
Matches are distributed among these distances:
77 2 0.01
78 191 0.74
79 2 0.01
84 1 0.00
87 1 0.00
88 16 0.06
90 11 0.04
92 33 0.13
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:74151822 original size:89 final size:89
Alignment explanation
Indices: 74151706--74151875 Score: 277
Period size: 89 Copynumber: 1.9 Consensus size: 89
74151696 TCCAAGATGA
*
74151706 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
74151771 TAGACGGGGAGCAGATTGAAAAAG
66 TAGACGGGGAGCAGATTGAAAAAG
** * * *
74151795 CAGATTTGGTGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAACAGATTTGGCGTCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
*
74151860 TAGATGGGGAGCAGAT
66 TAGACGGGGAGCAGAT
74151876 CAAAGATAGT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 74 1.00
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.27
Consensus pattern (89 bp):
CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
TAGACGGGGAGCAGATTGAAAAAG
Found at i:74151882 original size:45 final size:45
Alignment explanation
Indices: 74151616--74151883 Score: 249
Period size: 45 Copynumber: 5.9 Consensus size: 45
74151606 GATCCAAGAT
* * *
74151616 GATTTGGCATCTCTGTATTAGACAGTGAGCAGATCGAAGACATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATC-AA-AGATAACA
* * * * * * * *
74151663 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCAAAGATAACA
* **
74151708 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
* *
74151753 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAA-A-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGA-TCAAAGATAACA
** * *
74151797 GATTTGGTGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
* *
74151842 GATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCAAAGATA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATA
74151884 GTAGATATCA
Statistics
Matches: 177, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
43 4 0.02
44 38 0.21
45 105 0.59
46 7 0.04
47 18 0.10
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
Found at i:74152253 original size:17 final size:19
Alignment explanation
Indices: 74152231--74152273 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
74152221 ATGGAAATAT
74152231 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
74152248 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
74152267 AATCTTA
1 AATCTTA
74152274 GAAGATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 1 0.04
19 16 0.70
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:74152263 original size:19 final size:19
Alignment explanation
Indices: 74152239--74152275 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
74152229 ATAATCTTCA
74152239 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74152258 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
74152276 AGATATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:74152301 original size:22 final size:22
Alignment explanation
Indices: 74152239--74152298 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 22
74152229 ATAATCTTCA
74152239 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
74152258 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
74152280 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
74152299 GATTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.43
22 8 0.23
23 12 0.34
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:74152589 original size:17 final size:17
Alignment explanation
Indices: 74152565--74152599 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
74152555 TGTTTCCCGG
*
74152565 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
74152583 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
74152600 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:74154248 original size:34 final size:34
Alignment explanation
Indices: 74154209--74154306 Score: 133
Period size: 34 Copynumber: 2.9 Consensus size: 34
74154199 TCTGATATGT
74154209 TATGACATTTTGATATGGTATATGTTTCTGAAAA
1 TATGACATTTTGATATGGTATATGTTTCTGAAAA
* * **
74154243 TATGACATTTTGATCTAGTATATGTTTCTGGGAA
1 TATGACATTTTGATATGGTATATGTTTCTGAAAA
* **
74154277 TATGACATTTTGATTTGACATATGTTTCTG
1 TATGACATTTTGATATGGTATATGTTTCTG
74154307 GTAATGTGTA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (34 bp):
TATGACATTTTGATATGGTATATGTTTCTGAAAA
Found at i:74155104 original size:19 final size:19
Alignment explanation
Indices: 74155082--74155144 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 19
74155072 TGGCATTCTC
74155082 TCATATTTTTGGTACATCA
1 TCATATTTTTGGTACATCA
74155101 TCATA-TTTT--TACATCA
1 TCATATTTTTGGTACATCA
* * *
74155117 TCATATTATCGGTACATAA
1 TCATATTTTTGGTACATCA
74155136 TCAT-TTTTT
1 TCATATTTTT
74155145 TTTTACACTT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
16 12 0.33
17 2 0.06
18 7 0.19
19 15 0.42
ACGTcount: A:0.29, C:0.16, G:0.06, T:0.49
Consensus pattern (19 bp):
TCATATTTTTGGTACATCA
Found at i:74155250 original size:16 final size:17
Alignment explanation
Indices: 74155214--74155251 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
74155204 TTTTTTATTC
*
74155214 CCTCATATTTTTATGCAT
1 CCTCATATATTTA-GCAT
74155232 CCTCATATATTTA-CAT
1 CCTCATATATTTAGCAT
74155248 CCTC
1 CCTC
74155252 GTAACTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
18 12 0.63
ACGTcount: A:0.24, C:0.29, G:0.03, T:0.45
Consensus pattern (17 bp):
CCTCATATATTTAGCAT
Found at i:74157942 original size:12 final size:12
Alignment explanation
Indices: 74157899--74157942 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
74157889 CATTAACCTG
74157899 AAAAATATTATAT
1 AAAAAT-TTATAT
*
74157912 AAATATATTTATAA
1 AAA-A-ATTTATAT
74157926 AAAAATTTATAT
1 AAAAATTTATAT
74157938 AAAAA
1 AAAAA
74157943 CTAAATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 12 0.44
13 4 0.15
14 9 0.33
15 2 0.07
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AAAAATTTATAT
Found at i:74163178 original size:49 final size:49
Alignment explanation
Indices: 74163109--74163423 Score: 297
Period size: 49 Copynumber: 6.6 Consensus size: 49
74163099 CAAGTACCCG
*
74163109 GGATGGTAGAATATGCAAATAGTGAAAACCATCATTGTCAGGCCACCTA
1 GGATGGTAGAATATGCAAATAGTGAAAACCATCATTGTCGGGCCACCTA
* ** * * * *
74163158 GGATGAG-AGAATATGTAAATAGTGAAAATTATCGTTGTCGGGTCACTTG
1 GGATG-GTAGAATATGCAAATAGTGAAAACCATCATTGTCGGGCCACCTA
* * * * *
74163207 GGATAGTGGAATATGCAAATAGAGAAAATCATCATTGTCGGGCCA-ATA
1 GGATGGTAGAATATGCAAATAGTGAAAACCATCATTGTCGGGCCACCTA
* * ** *
74163255 GGTATGGTAGAATATGCAAATAGTG--AACTATCGTTAACGAGCCAACC-A
1 GG-ATGGTAGAATATGCAAATAGTGAAAACCATCATTGTCGGGCC-ACCTA
* * * * *
74163303 GGATGGTAGAATACGTAAATAGTGAAAACCATCATTTTCGGGTCATCTA
1 GGATGGTAGAATATGCAAATAGTGAAAACCATCATTGTCGGGCCACCTA
* *
74163352 GGATGGTAGAATATACAAATAGTGAAAACTATCATTGTC--G--ACCTA
1 GGATGGTAGAATATGCAAATAGTGAAAACCATCATTGTCGGGCCACCTA
* *
74163397 GGATGGTAGACTATACAAATAGTGAAA
1 GGATGGTAGAATATGCAAATAGTGAAA
74163424 GTAATCATTG
Statistics
Matches: 215, Mismatches: 43, Indels: 20
0.77 0.15 0.07
Matches are distributed among these distances:
45 30 0.14
47 33 0.15
48 10 0.05
49 141 0.66
50 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.25
Consensus pattern (49 bp):
GGATGGTAGAATATGCAAATAGTGAAAACCATCATTGTCGGGCCACCTA
Found at i:74163379 original size:145 final size:141
Alignment explanation
Indices: 74163109--74163422 Score: 341
Period size: 145 Copynumber: 2.2 Consensus size: 141
74163099 CAAGTACCCG
** *
74163109 GGATGGTAGAATATGCAAATAGTGAAAACCATCATTGTCAGGCCACCTAGGATGAGAGAATATGT
1 GGATGGTAGAATATGCAAATAGTG--AACCATCATTAACAGGCCACCTAGGATGAGAGAATACGT
** * * * *
74163174 AAATAGTGAAAATTATCGTTGTCGGGTCACTTGGGATAGTGGAATATGCAAATAGAGAAAA-TCA
64 AAATAGTGAAAACCATCATTGTCGGGTCACTTAGGATAGTAGAATATACAAATAGAGAAAACT-A
*
74163238 TCATTGTCGGGCCAATA
128 TCATTGTC-GACC--TA
* *
74163255 GGTATGGTAGAATATGCAAATAGTGAACTATCGTTAAC-GAGCCAACC-AGGATG-GTAGAATAC
1 GG-ATGGTAGAATATGCAAATAGTGAACCATCATTAACAG-GCC-ACCTAGGATGAG-AGAATAC
* * *
74163317 GTAAATAGTGAAAACCATCATTTTCGGGTCA-TCTAGGATGGTAGAATATACAAATAGTGAAAAC
62 GTAAATAGTGAAAACCATCATTGTCGGGTCACT-TAGGATAGTAGAATATACAAATAGAGAAAAC
74163381 TATCATTGTCGACCTA
126 TATCATTGTCGACCTA
* *
74163397 GGATGGTAGACTATACAAATAGTGAA
1 GGATGGTAGAATATGCAAATAGTGAA
74163423 AGTAATCATT
Statistics
Matches: 145, Mismatches: 17, Indels: 17
0.81 0.09 0.09
Matches are distributed among these distances:
141 22 0.15
142 4 0.03
144 6 0.04
145 85 0.59
146 6 0.04
147 22 0.15
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.25
Consensus pattern (141 bp):
GGATGGTAGAATATGCAAATAGTGAACCATCATTAACAGGCCACCTAGGATGAGAGAATACGTAA
ATAGTGAAAACCATCATTGTCGGGTCACTTAGGATAGTAGAATATACAAATAGAGAAAACTATCA
TTGTCGACCTA
Found at i:74164942 original size:27 final size:27
Alignment explanation
Indices: 74164890--74164981 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
74164880 TAAACATGAC
*
74164890 ATAAAAGAATAA-CTTCTATGGTGAACT
1 ATAAAAGAATAACCTTCT-TGGCGAACT
*
74164917 ATGAAAGAATAACCTT-TGTGGCGAACT
1 ATAAAAGAATAACCTTCT-TGGCGAACT
* *
74164944 AAAAAAGAATAACCTTCTTGGCAAACT
1 ATAAAAGAATAACCTTCTTGGCGAACT
*
74164971 CTAAAAGAATA
1 ATAAAAGAATA
74164982 GTTGTAACAA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
27 51 0.93
28 4 0.07
ACGTcount: A:0.46, C:0.14, G:0.15, T:0.25
Consensus pattern (27 bp):
ATAAAAGAATAACCTTCTTGGCGAACT
Found at i:74167167 original size:28 final size:27
Alignment explanation
Indices: 74167109--74167169 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 27
74167099 TAAGCCCCCC
74167109 CCAA-AAAAACCTAACCCAAAAAAAAA
1 CCAAGAAAAACCTAACCCAAAAAAAAA
*
74167135 -AAAGAAAAACCTAACCCTAAAAAAAAA
1 CCAAGAAAAACCTAACCC-AAAAAAAAA
74167162 CCAAGAAA
1 CCAAGAAA
74167170 CCCTAGCCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 2 0.07
26 13 0.43
27 9 0.30
28 6 0.20
ACGTcount: A:0.69, C:0.23, G:0.03, T:0.05
Consensus pattern (27 bp):
CCAAGAAAAACCTAACCCAAAAAAAAA
Found at i:74169658 original size:16 final size:16
Alignment explanation
Indices: 74169639--74169674 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
74169629 TATGTATGAA
74169639 ATGTGGTAATGTTTCC
1 ATGTGGTAATGTTTCC
74169655 ATGTGGTAATGTTTCC
1 ATGTGGTAATGTTTCC
74169671 ATGT
1 ATGT
74169675 TTAGGTAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.19, C:0.11, G:0.25, T:0.44
Consensus pattern (16 bp):
ATGTGGTAATGTTTCC
Found at i:74169789 original size:22 final size:20
Alignment explanation
Indices: 74169748--74169789 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
74169738 TGGTTCATTG
*
74169748 AATTGGTTTTTTTATGCTTT
1 AATTGGTTTTTTGATGCTTT
74169768 AATTGGTTTGTTTAGATGCTTT
1 AATTGGTTT-TTT-GATGCTTT
74169790 GGTTAAGGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 3 0.16
22 7 0.37
ACGTcount: A:0.17, C:0.05, G:0.19, T:0.60
Consensus pattern (20 bp):
AATTGGTTTTTTGATGCTTT
Found at i:74181733 original size:26 final size:26
Alignment explanation
Indices: 74181704--74181811 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
74181694 TGGTACAAAT
74181704 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
74181730 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74181756 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74181782 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74181808 TGAT
1 TGAT
74181812 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74185866 original size:41 final size:41
Alignment explanation
Indices: 74185796--74185997 Score: 248
Period size: 41 Copynumber: 5.0 Consensus size: 41
74185786 ATTGTAAAAC
* ** *
74185796 ACAGAGCAATAGCGGCG-TTTTGACAAAAACGCCACTAAA-A
1 ACAGAGCATTAGCGGCGCTTTTG-GTAAAACGCCGCTAAAGA
** * * * *
74185836 ATTGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCCAAA-A
1 ACAGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGCTAAAGA
*
74185877 ACAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGCTAAAGA
1 ACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGA
*
74185918 CCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGA
1 ACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGA
*
74185959 CCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAA
1 ACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAA
74185998 TACCAGAGTA
Statistics
Matches: 144, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
40 33 0.23
41 106 0.74
42 5 0.03
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (41 bp):
ACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGA
Found at i:74186003 original size:41 final size:41
Alignment explanation
Indices: 74185839--74186005 Score: 255
Period size: 41 Copynumber: 4.1 Consensus size: 41
74185829 ACTAAAAATT
* * * * *
74185839 GAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCCAAA-AACA
1 GAGCATTAGCGGCG-CTTTTGGTAAAACGCCGCTAAAGACCA
*
74185880 GAGCATTAGCGGCGCTTTTGGTGAAACGCCGCTAAAGACCA
1 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCA
74185921 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCA
1 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCA
*
74185962 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAATACCA
1 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCA
74186003 GAG
1 GAG
74186006 TAACTCCTAA
Statistics
Matches: 117, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 18 0.15
41 99 0.85
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.20
Consensus pattern (41 bp):
GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCA
Found at i:74186731 original size:21 final size:21
Alignment explanation
Indices: 74186698--74186740 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
74186688 ATATATGTTC
*
74186698 ATGGTCTAGGATTTAGGGTTT
1 ATGGTCTAAGATTTAGGGTTT
* *
74186719 ATGGTTTAAGATTTGGGGTTT
1 ATGGTCTAAGATTTAGGGTTT
74186740 A
1 A
74186741 ATTTTTAGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.02, G:0.33, T:0.44
Consensus pattern (21 bp):
ATGGTCTAAGATTTAGGGTTT
Found at i:74187170 original size:8 final size:8
Alignment explanation
Indices: 74187151--74187234 Score: 63
Period size: 8 Copynumber: 11.2 Consensus size: 8
74187141 CAATATTCAA
74187151 AAAAATTT
1 AAAAATTT
74187159 -AAAATTT
1 AAAAATTT
74187166 AAAAA--T
1 AAAAATTT
**
74187172 AAAAAAAT
1 AAAAATTT
* *
74187180 AAAAAATA
1 AAAAATTT
*
74187188 AAAAAATT
1 AAAAATTT
74187196 -AAAATTT
1 AAAAATTT
74187203 -AAAATTT
1 AAAAATTT
*
74187210 AAAAA-TA
1 AAAAATTT
*
74187217 AAAAACTT
1 AAAAATTT
74187225 AAAAATTT
1 AAAAATTT
74187233 AA
1 AA
74187235 TATTTAATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
6 6 0.09
7 26 0.41
8 32 0.50
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.27
Consensus pattern (8 bp):
AAAAATTT
Found at i:74187170 original size:18 final size:21
Alignment explanation
Indices: 74187130--74187170 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
74187120 ATGTTAATTT
*
74187130 AAAAATTATAACAATATTCAA
1 AAAAATTATAACAATATTAAA
74187151 AAAAATT-TAA-AAT-TTAAA
1 AAAAATTATAACAATATTAAA
74187169 AA
1 AA
74187171 TAAAAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 6 0.32
19 3 0.16
20 3 0.16
21 7 0.37
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (21 bp):
AAAAATTATAACAATATTAAA
Found at i:74187171 original size:15 final size:15
Alignment explanation
Indices: 74187159--74187230 Score: 83
Period size: 15 Copynumber: 4.9 Consensus size: 15
74187149 AAAAAAATTT
74187159 AAAATTTAAAAATAA
1 AAAATTTAAAAATAA
* *
74187174 AAAAATAAAAAATAA
1 AAAATTTAAAAATAA
* **
74187189 AAAAATT-AAAATTT
1 AAAATTTAAAAATAA
74187203 AAAATTTAAAAATAA
1 AAAATTTAAAAATAA
*
74187218 AAAACTTAAAAAT
1 AAAATTTAAAAAT
74187231 TTAATATTTA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.23
15 36 0.77
ACGTcount: A:0.74, C:0.01, G:0.00, T:0.25
Consensus pattern (15 bp):
AAAATTTAAAAATAA
Found at i:74187200 original size:37 final size:38
Alignment explanation
Indices: 74187149--74187241 Score: 118
Period size: 37 Copynumber: 2.5 Consensus size: 38
74187139 AACAATATTC
74187149 AAAAAAATTTAAAATTTAAAAATAAAAAAATAAAAAA-T
1 AAAAAAA-TTAAAATTTAAAAATAAAAAAATAAAAAACT
**
74187187 AAAAAAATTAAAATTT-AAAATTTAAAAATAAAAAACT
1 AAAAAAATTAAAATTTAAAAATAAAAAAATAAAAAACT
* * *
74187224 TAAAAATTTAATATTTAA
1 AAAAAAATTAAAATTTAA
74187242 TATTTTAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
36 17 0.35
37 23 0.48
38 8 0.17
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (38 bp):
AAAAAAATTAAAATTTAAAAATAAAAAAATAAAAAACT
Found at i:74187231 original size:30 final size:29
Alignment explanation
Indices: 74187181--74187241 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
74187171 TAAAAAAATA
74187181 AAAAATAAAAAAATTAAAATTTAAAATTT
1 AAAAATAAAAAAATTAAAATTTAAAATTT
* *
74187210 AAAAATAAAAAACTTAAAAATTTAATATTT
1 AAAAATAAAAAAATT-AAAATTTAAAATTT
74187240 AA
1 AA
74187242 TATTTTAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 14 0.48
30 15 0.52
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (29 bp):
AAAAATAAAAAAATTAAAATTTAAAATTT
Found at i:74187241 original size:15 final size:15
Alignment explanation
Indices: 74187151--74187241 Score: 76
Period size: 15 Copynumber: 6.1 Consensus size: 15
74187141 CAATATTCAA
74187151 AAAAATTTAAAATTT
1 AAAAATTTAAAATTT
** * *
74187166 AAAAATAAAAAAATA
1 AAAAATTTAAAATTT
** *
74187181 AAAAATAAAAAAATT
1 AAAAATTTAAAATTT
74187196 -AAAATTTAAAATTT
1 AAAAATTTAAAATTT
** *
74187210 AAAAATAAAAAACTT
1 AAAAATTTAAAATTT
*
74187225 AAAAATTTAATATTT
1 AAAAATTTAAAATTT
74187240 AA
1 AA
74187242 TATTTTAATT
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
14 11 0.18
15 49 0.82
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAATTTAAAATTT
Found at i:74187320 original size:18 final size:18
Alignment explanation
Indices: 74187293--74187340 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
74187283 ATTTAAAAAT
74187293 AAAT-AAAAAAATGTTAA
1 AAATAAAAAAAATGTTAA
74187310 AAATAAAAAAAATGTTAA
1 AAATAAAAAAAATGTTAA
74187328 AAATAAAAAAAAT
1 AAATAAAAAAAAT
74187341 TAAAATTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 4 0.13
18 26 0.87
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (18 bp):
AAATAAAAAAAATGTTAA
Found at i:74187343 original size:16 final size:16
Alignment explanation
Indices: 74187293--74187350 Score: 71
Period size: 18 Copynumber: 3.4 Consensus size: 16
74187283 ATTTAAAAAT
*
74187293 AAATAAAAAAATGTTAA
1 AAATAAAAAAA-ATTAA
74187310 AAATAAAAAAAATGTTAA
1 AAATAAAAAAAA--TTAA
74187328 AAATAAAAAAAATTAA
1 AAATAAAAAAAATTAA
*
74187344 AATTAAA
1 AAATAAA
74187351 CAATAGTGGC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
16 10 0.27
17 11 0.30
18 16 0.43
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.22
Consensus pattern (16 bp):
AAATAAAAAAAATTAA
Found at i:74190427 original size:12 final size:12
Alignment explanation
Indices: 74190410--74190434 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74190400 ATGTTGGCTG
74190410 TTTTTATTTATT
1 TTTTTATTTATT
74190422 TTTTTATTTATT
1 TTTTTATTTATT
74190434 T
1 T
74190435 ATGAATATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTATTTATT
Found at i:74190893 original size:21 final size:21
Alignment explanation
Indices: 74190848--74190893 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
74190838 CATTTCATTG
*
74190848 TGTTTGGAAGAAACAAAGAAG
1 TGTTTGGAAGAAACAAAGAAA
* * *
74190869 TGTTTGGAATAAATAAATAAA
1 TGTTTGGAAGAAACAAAGAAA
74190890 TGTT
1 TGTT
74190894 GTCAGCATGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.30
Consensus pattern (21 bp):
TGTTTGGAAGAAACAAAGAAA
Found at i:74192539 original size:44 final size:43
Alignment explanation
Indices: 74192451--74192591 Score: 183
Period size: 43 Copynumber: 3.3 Consensus size: 43
74192441 TTTTAAAATT
* * * *
74192451 TCATTACCTTTAGCGGCGTTTTTAGGTAAAGCGCCGCTAAAGG
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
* * * *
74192494 TCGTGACCTTTAGCGGTGTTTGTGGGAAAAAGTGTCGCTAAAGG
1 TCATGACCTTTAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGG
* *
74192538 TCAAGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGG
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
74192581 TCATGACCTTT
1 TCATGACCTTT
74192592 CACTAAAGTT
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
43 45 0.55
44 37 0.45
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
Found at i:74195429 original size:26 final size:26
Alignment explanation
Indices: 74195400--74195507 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
74195390 TGATACAAAT
74195400 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
74195426 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74195452 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74195478 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74195504 TGAT
1 TGAT
74195508 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74201846 original size:22 final size:23
Alignment explanation
Indices: 74201799--74201847 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
74201789 TAAGATACAT
*
74201799 TTTTTTATCATTAAAAATAACTA
1 TTTTTTATCATTAAAAATAACAA
*
74201822 TTTTTTAT-ATTTAAAATTAA-AA
1 TTTTTTATCA-TTAAAAATAACAA
74201844 TTTT
1 TTTT
74201848 AAATAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (23 bp):
TTTTTTATCATTAAAAATAACAA
Found at i:74203344 original size:21 final size:22
Alignment explanation
Indices: 74203320--74203367 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
74203310 GATTTCTTAA
74203320 ATATAAATAATTATTTATTT-T
1 ATATAAATAATTATTTATTTAT
* *
74203341 ATATAAATATTTGTTTATTTAT
1 ATATAAATAATTATTTATTTAT
74203363 ATATA
1 ATATA
74203368 TATATATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
ATATAAATAATTATTTATTTAT
Found at i:74203363 original size:20 final size:21
Alignment explanation
Indices: 74203320--74203376 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 21
74203310 GATTTCTTAA
*
74203320 ATATAAATAATTATTTATTTT
1 ATATAAATATTTATTTATTTT
*
74203341 ATATAAATATTTGTTTA-TTT
1 ATATAAATATTTATTTATTTT
* *
74203361 ATATATATATATATTT
1 ATATAAATATTTATTT
74203377 GCTAACGTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
20 16 0.52
21 15 0.48
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
ATATAAATATTTATTTATTTT
Found at i:74203374 original size:24 final size:25
Alignment explanation
Indices: 74203330--74203377 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
74203320 ATATAAATAA
*
74203330 TTATTTATTTTATATAAATATTTGT
1 TTATTTATTATATATAAATATTTGT
*
74203355 TTATTTA-TATATATATATATTTG
1 TTATTTATTATATATAAATATTTG
74203378 CTAACGTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (25 bp):
TTATTTATTATATATAAATATTTGT
Found at i:74210329 original size:20 final size:20
Alignment explanation
Indices: 74210296--74210382 Score: 88
Period size: 20 Copynumber: 4.2 Consensus size: 20
74210286 TTGGTATTCT
74210296 CTCATAATTTTTTTATACTTC
1 CTCATAA-TTTTTTATACTTC
74210317 CTCATAATTTTTTATACATT-
1 CTCATAATTTTTTATAC-TTC
* *
74210337 TTCATATTTTTTTAATA-TTC
1 CTCATAATTTTTT-ATACTTC
* *
74210357 TCTCATAATTTTTTGTACTTT
1 -CTCATAATTTTTTATACTTC
74210378 CTCAT
1 CTCAT
74210383 TTTTTGGTAC
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
19 2 0.04
20 28 0.51
21 25 0.45
ACGTcount: A:0.24, C:0.16, G:0.01, T:0.59
Consensus pattern (20 bp):
CTCATAATTTTTTATACTTC
Found at i:74210486 original size:23 final size:24
Alignment explanation
Indices: 74210442--74210489 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
74210432 CTTCTTAATA
74210442 TTTTTAGTATTCCTTCATTATTTT
1 TTTTTAGTATTCCTTCATTATTTT
*
74210466 TTTTTTGTATT-CTCTCA-TATTTT
1 TTTTTAGTATTCCT-TCATTATTTT
74210489 T
1 T
74210490 GGTACATCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.15, C:0.12, G:0.04, T:0.69
Consensus pattern (24 bp):
TTTTTAGTATTCCTTCATTATTTT
Found at i:74210502 original size:19 final size:17
Alignment explanation
Indices: 74210480--74210524 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
74210470 TTGTATTCTC
74210480 TCATATTTTTGGTACATCA
1 TCATATTTTT--TACATCA
74210499 TCATA-TTTTTACATCA
1 TCATATTTTTTACATCA
74210515 TCAT-TTTTTT
1 TCATATTTTTT
74210525 TTTACTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 16 0.64
18 4 0.16
19 5 0.20
ACGTcount: A:0.24, C:0.16, G:0.04, T:0.56
Consensus pattern (17 bp):
TCATATTTTTTACATCA
Found at i:74210674 original size:20 final size:19
Alignment explanation
Indices: 74210660--74210744 Score: 89
Period size: 20 Copynumber: 4.3 Consensus size: 19
74210650 TCCTCATATT
74210660 TTTTTGGTATCCCTCATAA
1 TTTTTGGTATCCCTCATAA
* *
74210679 CTTTTGGTATCCGATCATAA
1 TTTTTGGTATCC-CTCATAA
* *
74210699 TTTTTGGTATTTCCTCATAT
1 TTTTTGGTA-TCCCTCATAA
*
74210719 TTTTTGGTATTCTCTCATAA
1 TTTTTGGTA-TCCCTCATAA
74210739 TCTTTT
1 T-TTTT
74210745 ATACATCTAA
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
19 11 0.20
20 37 0.69
21 6 0.11
ACGTcount: A:0.19, C:0.18, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTTGGTATCCCTCATAA
Found at i:74213677 original size:21 final size:21
Alignment explanation
Indices: 74213652--74213692 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
74213642 TTTTTGGTGC
*
74213652 TTCCTTATATTTCTTTTGTAA
1 TTCCTCATATTTCTTTTGTAA
* *
74213673 TTCCTCATGTTTTTTTTGTA
1 TTCCTCATATTTCTTTTGTA
74213693 TTCATTCATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (21 bp):
TTCCTCATATTTCTTTTGTAA
Found at i:74213871 original size:20 final size:20
Alignment explanation
Indices: 74213848--74213909 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
74213838 TATTTTTTGC
*
74213848 TATTCCCTCAAAATTTTTTA
1 TATTCCCTCAAATTTTTTTA
* **
74213868 TATTTCCTCGTATTTTTTTA
1 TATTCCCTCAAATTTTTTTA
* *
74213888 GTATACCCTCAATTTTTTTTA
1 -TATTCCCTCAAATTTTTTTA
74213909 T
1 T
74213910 GTGGTTTGGA
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
20 17 0.53
21 15 0.47
ACGTcount: A:0.23, C:0.18, G:0.03, T:0.56
Consensus pattern (20 bp):
TATTCCCTCAAATTTTTTTA
Found at i:74214305 original size:19 final size:21
Alignment explanation
Indices: 74214261--74214304 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
74214251 GGAATAACAC
*
74214261 AAAATATGATGTGAGTACCAA
1 AAAATATGATGTAAGTACCAA
74214282 AAAATATGATG-AAGTACCAA
1 AAAATATGATGTAAGTACCAA
74214302 AAA
1 AAA
74214305 TTATAAGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.55, C:0.09, G:0.16, T:0.20
Consensus pattern (21 bp):
AAAATATGATGTAAGTACCAA
Found at i:74214370 original size:17 final size:18
Alignment explanation
Indices: 74214338--74214372 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
74214328 ATTCTTCTTA
74214338 TAAAATTTACTTTATTTTT
1 TAAAATTTA-TTTATTTTT
74214357 TAAAATTT-TTTATTTT
1 TAAAATTTATTTATTTT
74214373 ATAGTATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (18 bp):
TAAAATTTATTTATTTTT
Found at i:74214530 original size:20 final size:21
Alignment explanation
Indices: 74214496--74214552 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 21
74214486 TGCCTTACGA
*
74214496 GAAAATACT-AAAATTATG-G
1 GAAAATATTAAAAATTATGAG
74214515 GAAAATATTAAAAATTATGAG
1 GAAAATATTAAAAATTATGAG
* *
74214536 G-AATTATTAATAATTAT
1 GAAAATATTAAAAATTAT
74214553 TAAAAAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.24
20 23 0.70
21 2 0.06
ACGTcount: A:0.53, C:0.02, G:0.12, T:0.33
Consensus pattern (21 bp):
GAAAATATTAAAAATTATGAG
Found at i:74216582 original size:18 final size:18
Alignment explanation
Indices: 74216551--74216585 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74216541 TATTTGAATA
74216551 AAAATATTAGAAAATTTC
1 AAAATATTAGAAAATTTC
* *
74216569 AAAATTTTATAAAATTT
1 AAAATATTAGAAAATTT
74216586 TTCAAAAGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (18 bp):
AAAATATTAGAAAATTTC
Done.