Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 225 of 343
Found at i:74217448 original size:16 final size:15
Alignment explanation
Indices: 74217429--74217465 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
74217419 AAATAATCAC
74217429 AAATATTAACATTTTA
1 AAATATT-ACATTTTA
*
74217445 AAATAGTACATTTTA
1 AAATATTACATTTTA
74217460 AAATAT
1 AAATAT
74217466 CTTAATTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (15 bp):
AAATATTACATTTTA
Found at i:74221717 original size:146 final size:147
Alignment explanation
Indices: 74221453--74221757 Score: 346
Period size: 146 Copynumber: 2.1 Consensus size: 147
74221443 GGCCACTCAA
** * *
74221453 GATGGTAGAATATGCAAATAGTGAAAACCATTATTGTCGGGCCACCCAAGATGGTAGAATATGTA
1 GATGGTAGAATACACAAATAGTGAAAACCATCATTGTCGGGCCACCCAAGATGGTAGAATATGCA
* * *
74221518 AATAGTGAAAACTATCATTATCAAGCCACCTGGGATGGTAGAATATGCAAATAGTAAAAACCATT
66 AATAGTGAAAACCATCATTATCAAGCCACCTGAGATGATAGAATATGCAAATAGTAAAAACCATT
74221583 -TTGTCGGACCACCT-AG
131 ATTGTCGGACCA-CTGAG
* * * * * ** *
74221599 GATGGTAGAATACATAAATAGTGAAAACTATCATTGTCTGGTCACTCGGGATGGTAGACTATGCA
1 GATGGTAGAATACACAAATAGTGAAAACCATCATTGTCGGGCCACCCAAGATGGTAGAATATGCA
* * ** * * *
74221664 AATAGTGGAAACCATCATTGTCCGGCCA-TTCGAGATGATAGAATATGCAAATAGTGAAAACTAT
66 AATAGTGAAAACCATCATTATCAAGCCACCT-GAGATGATAGAATATGCAAATAGTAAAAACCAT
* * *
74221728 TATTTTCGGGCCACTGGG
130 TATTGTCGGACCACTGAG
74221746 GATGGTAGAATA
1 GATGGTAGAATA
74221758 TGTAGATAAT
Statistics
Matches: 131, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
145 1 0.01
146 108 0.82
147 22 0.17
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (147 bp):
GATGGTAGAATACACAAATAGTGAAAACCATCATTGTCGGGCCACCCAAGATGGTAGAATATGCA
AATAGTGAAAACCATCATTATCAAGCCACCTGAGATGATAGAATATGCAAATAGTAAAAACCATT
ATTGTCGGACCACTGAG
Found at i:74221771 original size:49 final size:49
Alignment explanation
Indices: 74221425--74221759 Score: 334
Period size: 49 Copynumber: 6.9 Consensus size: 49
74221415 ATATAGTGAT
* * **
74221425 TGAAAACCATCGTTGTTGGGCCACTCAAGATGGTAGAATATGCAAATAG
1 TGAAAACCATCATTGTCGGGCCACTCGGGATGGTAGAATATGCAAATAG
* * ** *
74221474 TGAAAACCATTATTGTCGGGCCACCCAAGATGGTAGAATATGTAAATAG
1 TGAAAACCATCATTGTCGGGCCACTCGGGATGGTAGAATATGCAAATAG
* * **
74221523 TGAAAACTATCATTATCAAGCCAC-CTGGGATGGTAGAATATGCAAATAG
1 TGAAAACCATCATTGTCGGGCCACTC-GGGATGGTAGAATATGCAAATAG
* * * * ***
74221572 TAAAAACCAT-TTTGTCGGACCAC-CTAGGATGGTAGAATACATAAATAG
1 TGAAAACCATCATTGTCGGGCCACTC-GGGATGGTAGAATATGCAAATAG
* * * *
74221620 TGAAAACTATCATTGTCTGGTCACTCGGGATGGTAGACTATGCAAATAG
1 TGAAAACCATCATTGTCGGGCCACTCGGGATGGTAGAATATGCAAATAG
* * * * *
74221669 TGGAAACCATCATTGTCCGGCCATTCGAGATGATAGAATATGCAAATAG
1 TGAAAACCATCATTGTCGGGCCACTCGGGATGGTAGAATATGCAAATAG
* * * *
74221718 TGAAAACTATTATTTTCGGGCCACTGGGGATGGTAGAATATG
1 TGAAAACCATCATTGTCGGGCCACTCGGGATGGTAGAATATG
74221760 TAGATAATGA
Statistics
Matches: 231, Mismatches: 52, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
48 38 0.16
49 192 0.83
50 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (49 bp):
TGAAAACCATCATTGTCGGGCCACTCGGGATGGTAGAATATGCAAATAG
Found at i:74221789 original size:98 final size:96
Alignment explanation
Indices: 74221453--74221805 Score: 332
Period size: 98 Copynumber: 3.6 Consensus size: 96
74221443 GGCCACTCAA
* * *
74221453 GATGGTAGAATATGCAAATAGTGAAAACCATTATTGTCGGGCCACCCAAGATGGTAGAATATGTA
1 GATGGTAGAATATGCAAATAGTGAAAACAATTGTTGCCGGGCCA-CCAAGATGGTAGAATATGTA
*
74221518 AATAGTGAAAACTATCATTATCAAGCCACCTGG
65 AATAGTGAAAACTATCATTATCAGGCCA-CTGG
* * * * * **
74221551 GATGGTAGAATATGCAAATAGTAAAAACCATT-TTGTCGGACCACCTAGGATGGTAGAATACATA
1 GATGGTAGAATATGCAAATAGTGAAAACAATTGTTGCCGGGCCACC-AAGATGGTAGAATATGTA
* * *
74221615 AATAGTGAAAACTATCATTGTCTGGTCACTCGG
65 AATAGTGAAAACTATCATTATCAGGCCACT-GG
* * * ** * * * *
74221648 GATGGTAGACTATGCAAATAGTGGAAACCATCATTGTCC-GGCCATTCGAGATGATAGAATATGC
1 GATGGTAGAATATGCAAATAGTGAAAACAATTGTTG-CCGGGCCA-CCAAGATGGTAGAATATGT
* * *
74221712 AAATAGTGAAAACTATTATTTTCGGGCCACTGGG
64 AAATAGTGAAAACTATCATTATCAGGCCACT-GG
* * * * **
74221746 GATGGTAGAATATGTAGATAATGAAAGCAATTGTTGCCGGGCCAACCGTGATGGTAGAAT
1 GATGGTAGAATATGCAAATAGTGAAAACAATTGTTGCCGGGCC-ACCAAGATGGTAGAAT
74221806 GTACAAGTTC
Statistics
Matches: 209, Mismatches: 39, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
96 4 0.02
97 81 0.39
98 121 0.58
99 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (96 bp):
GATGGTAGAATATGCAAATAGTGAAAACAATTGTTGCCGGGCCACCAAGATGGTAGAATATGTAA
ATAGTGAAAACTATCATTATCAGGCCACTGG
Found at i:74224594 original size:16 final size:16
Alignment explanation
Indices: 74224575--74224610 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
74224565 AGTATTTTTC
*
74224575 AAATTTTGAAAAAATA
1 AAATTTAGAAAAAATA
*
74224591 AAATTTAGTAAAAATA
1 AAATTTAGAAAAAATA
74224607 AAAT
1 AAAT
74224611 AAATTATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.31
Consensus pattern (16 bp):
AAATTTAGAAAAAATA
Found at i:74226779 original size:3 final size:3
Alignment explanation
Indices: 74226771--74226799 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
74226761 GTCATTTTGC
74226771 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
74226800 TTCGAAACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:74230710 original size:44 final size:44
Alignment explanation
Indices: 74230636--74231054 Score: 529
Period size: 44 Copynumber: 9.5 Consensus size: 44
74230626 TGTTATTTTT
* *
74230636 GATCTACTCTCTGCCAATATAGAGACGCCAAATCTGCTATCTTC
1 GATCTGCTCTCTGCCAATATAGAGATGCCAAATCTGCTATCTTC
* *
74230680 TATCTGCTCTTTGCCAATATAGAGATGCCAAATCTGCTATCTTC
1 GATCTGCTCTCTGCCAATATAGAGATGCCAAATCTGCTATCTTC
* * *
74230724 GATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTATCTTT
1 GATCTGCTCTCTGCCAATATAGAGATGCCAAATCTGCTATCTTC
* * *
74230768 GATCTGCTCTCCGCCAATATAGAGACGCCAAATCTGCTATATTC
1 GATCTGCTCTCTGCCAATATAGAGATGCCAAATCTGCTATCTTC
* * * *
74230812 GATCTACTTTCTGCCAATACAGAGATGCCAAATCTACTATCTTC
1 GATCTGCTCTCTGCCAATATAGAGATGCCAAATCTGCTATCTTC
* *
74230856 GACCTGCTCTCTGCCAAT-TCAGAGATACCAAATCTGCTATCTTC
1 GATCTGCTCTCTGCCAATAT-AGAGATGCCAAATCTGCTATCTTC
* * * *
74230900 GACCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTC
1 GATCTGCTCTCTGCCAATATAGAGATGCCAAATCTGCTATCTTC
* * *
74230944 GATCTACTCTCCGCCAAT-CAGAGATGCCAAATCTGCTATCTTC
1 GATCTGCTCTCTGCCAATATAGAGATGCCAAATCTGCTATCTTC
* * *
74230987 GACCTGCTCTTTGCCAAT-TCCGAGATGCCAAATCTGCTATCTTC
1 GATCTGCTCTCTGCCAATAT-AGAGATGCCAAATCTGCTATCTTC
* * * *
74231031 GATCTACTCCCCGCCAATACAGAG
1 GATCTGCTCTCTGCCAATATAGAG
74231055 CCAAATCTGC
Statistics
Matches: 325, Mismatches: 46, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
43 38 0.12
44 287 0.88
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.29
Consensus pattern (44 bp):
GATCTGCTCTCTGCCAATATAGAGATGCCAAATCTGCTATCTTC
Found at i:74230872 original size:132 final size:132
Alignment explanation
Indices: 74230636--74231054 Score: 626
Period size: 132 Copynumber: 3.2 Consensus size: 132
74230626 TGTTATTTTT
* * * * *
74230636 GATCTACTCTCTGCCAATATAGAGACGCCAAATCTGCTATCTTCTATCTGCTCTT-TGCCAATAT
1 GATCTACTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTACT-TTCTGCCAATAC
* * *
74230700 AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTATC
65 AGAGATGCCAAATCTGCTATCTTCGACCTGCTCTCTGCCAATTCAGAGATGCCAAATCTGCTATC
*
74230765 TTT
130 TTC
* * *
74230768 GATCTGCTCTCCGCCAATATAGAGACGCCAAATCTGCTATATTCGATCTACTTTCTGCCAATACA
1 GATCTACTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTACTTTCTGCCAATACA
* *
74230833 GAGATGCCAAATCTACTATCTTCGACCTGCTCTCTGCCAATTCAGAGATACCAAATCTGCTATCT
66 GAGATGCCAAATCTGCTATCTTCGACCTGCTCTCTGCCAATTCAGAGATGCCAAATCTGCTATCT
74230898 TC
131 TC
* * * *
74230900 GACCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCCGCCAAT-CA
1 GATCTACTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTACTTTCTGCCAATACA
* *
74230964 GAGATGCCAAATCTGCTATCTTCGACCTGCTCTTTGCCAATTCCGAGATGCCAAATCTGCTATCT
66 GAGATGCCAAATCTGCTATCTTCGACCTGCTCTCTGCCAATTCAGAGATGCCAAATCTGCTATCT
74231029 TC
131 TC
*
74231031 GATCTACTCCCCGCCAATACAGAG
1 GATCTACTCTCCGCCAATACAGAG
74231055 CCAAATCTGC
Statistics
Matches: 262, Mismatches: 24, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
131 88 0.34
132 174 0.66
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.29
Consensus pattern (132 bp):
GATCTACTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTACTTTCTGCCAATACA
GAGATGCCAAATCTGCTATCTTCGACCTGCTCTCTGCCAATTCAGAGATGCCAAATCTGCTATCT
TC
Found at i:74245925 original size:44 final size:44
Alignment explanation
Indices: 74245877--74246281 Score: 594
Period size: 44 Copynumber: 9.2 Consensus size: 44
74245867 ATAAAGACGT
* *
74245877 CAAATCTGCTATCTTCGATCTGCTCTCTGCTAATACAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGC
*
74245921 CAAATCTGCTATCTTCGATCTGCTCTTCGCCAATACAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGC
* * * * *
74245965 CAAATCTGTTATCTTTGATCTGTTCTCCGTCAATACAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGC
74246009 CAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGC
* * * * *
74246053 CAAATCTGTTATCTTCGACCTGCTCTTCGTCAATTCAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGC
* * * * *
74246097 CAAATTTACTATCTTCGACCTGCTCTCTGCCAATACAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGC
74246141 CAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGC
* * *
74246185 CAAATCTGCTATCTTCGACCTGCTCTCCGCCAATTCTGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGC
* * *
74246229 CAAATATGCTATCTTCGATTTGCTCCCCGCCAATACAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGC
74246273 CAAATCTGC
1 CAAATCTGC
74246282 AGGATTCACC
Statistics
Matches: 319, Mismatches: 42, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 319 1.00
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (44 bp):
CAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGC
Found at i:74252277 original size:75 final size:74
Alignment explanation
Indices: 74252072--74252384 Score: 379
Period size: 73 Copynumber: 4.3 Consensus size: 74
74252062 CAGTTTGTGT
* * *
74252072 TTTTTAATTTATG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACAC
74252136 GCTGAGGTA
66 GCTGAGGTA
* * * *
74252145 TTTTTAATTT-TAAG-TTT-GAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGC
1 TTTTCAATTTCT--GTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGAC
*
74252207 ACGCTGGGGTA
64 ACGCTGAGGTA
* * *
74252218 TTTTCAATTTCTGCTTTTCAAAAAAATCAACTTACATTGCGAGAGATGAGTTGGGCCTCAGGACA
1 TTTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACA
74252283 CGCTGAGGTA
65 CGCTGAGGTA
* *
74252293 ATTTCAATTTCTGTTTGTC--AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGATA
1 TTTTCAATTTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACA
** *
74252356 TACTAAGGTA
65 CGCTGAGGTA
* *
74252366 TTTTTAATTT-TTTTTTCAA
1 TTTTCAATTTCTGTTTTCAA
74252385 TTTGTATTTT
Statistics
Matches: 209, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
71 2 0.01
72 6 0.03
73 127 0.61
74 11 0.05
75 63 0.30
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACAC
GCTGAGGTA
Found at i:74252366 original size:148 final size:147
Alignment explanation
Indices: 74252085--74252375 Score: 413
Period size: 148 Copynumber: 2.0 Consensus size: 147
74252075 TTAATTTATG
* * * *
74252085 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTT
1 TTTCAAAAAAATCAACTCACATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* * * **
74252150 AATTTTAAGTTTGAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGGG
66 AATTTT-AGTTTGAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACACTAAG
74252215 GTATTTTCAATTTCTGCT
130 GTATTTTCAATTTCTGCT
* *
74252233 TTTCAAAAAAATCAACTTACATTGCGAGAGATGAGTTGGGCCTCAGGACACGCTGAGGTAATTTC
1 TTTCAAAAAAATCAACTCACATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* * *
74252298 AATTTCT-GTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGATATACTAA
66 AATTT-TAGTTTG-AAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACACTAA
*
74252362 GGTATTTTTAATTT
129 GGTATTTTCAATTT
74252376 TTTTTTCAAT
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
147 5 0.04
148 120 0.95
149 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.32
Consensus pattern (147 bp):
TTTCAAAAAAATCAACTCACATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTTTAGTTTGAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACACTAAGG
TATTTTCAATTTCTGCT
Found at i:74252386 original size:12 final size:14
Alignment explanation
Indices: 74252363--74252398 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
74252353 ATATACTAAG
74252363 GTATTTTT-AATTT
1 GTATTTTTCAATTT
74252376 -T-TTTTTCAATTT
1 GTATTTTTCAATTT
74252388 GTATTTTTCAA
1 GTATTTTTCAA
74252399 AAATCAACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
11 5 0.25
12 6 0.30
13 1 0.05
14 8 0.40
ACGTcount: A:0.22, C:0.06, G:0.06, T:0.67
Consensus pattern (14 bp):
GTATTTTTCAATTT
Found at i:74253172 original size:14 final size:14
Alignment explanation
Indices: 74253153--74253197 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
74253143 ACCTATTTAT
74253153 AACCCAATCCCTAA
1 AACCCAATCCCTAA
* *
74253167 AACCC-AT--TTAT
1 AACCCAATCCCTAA
74253178 AACCCAATCCCTAA
1 AACCCAATCCCTAA
74253192 AACCCA
1 AACCCA
74253198 TTTACATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
11 7 0.29
12 2 0.08
13 2 0.08
14 13 0.54
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.18
Consensus pattern (14 bp):
AACCCAATCCCTAA
Found at i:74253177 original size:25 final size:25
Alignment explanation
Indices: 74253147--74253201 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
74253137 CCCAACACCT
74253147 ATTTATAACCCAATCCCTAAAACCC
1 ATTTATAACCCAATCCCTAAAACCC
74253172 ATTTATAACCCAATCCCTAAAACCC
1 ATTTATAACCCAATCCCTAAAACCC
74253197 ATTTA
1 ATTTA
74253202 CATAAAACCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.27
Consensus pattern (25 bp):
ATTTATAACCCAATCCCTAAAACCC
Found at i:74255133 original size:3 final size:3
Alignment explanation
Indices: 74255125--74255174 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
74255115 TATTTTTGTC
74255125 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
74255173 AT
1 AT
74255175 CAGTATCATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:74256548 original size:22 final size:20
Alignment explanation
Indices: 74256523--74256572 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
74256513 CCTCTTTTGT
*
74256523 TTTTTGGTATTCTCTCTCATAA
1 TTTTTGATATT-TC-CTCATAA
*
74256545 TTTTTTATATTTCCTCATAA
1 TTTTTGATATTTCCTCATAA
*
74256565 CTTTTGAT
1 TTTTTGAT
74256573 GCATTTTCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 13 0.54
21 2 0.08
22 9 0.38
ACGTcount: A:0.20, C:0.16, G:0.06, T:0.58
Consensus pattern (20 bp):
TTTTTGATATTTCCTCATAA
Found at i:74256683 original size:17 final size:17
Alignment explanation
Indices: 74256661--74256712 Score: 104
Period size: 17 Copynumber: 3.1 Consensus size: 17
74256651 TTTGATAGTC
74256661 AAATTAGACTTTCCGTT
1 AAATTAGACTTTCCGTT
74256678 AAATTAGACTTTCCGTT
1 AAATTAGACTTTCCGTT
74256695 AAATTAGACTTTCCGTT
1 AAATTAGACTTTCCGTT
74256712 A
1 A
74256713 CACTTAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 35 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (17 bp):
AAATTAGACTTTCCGTT
Found at i:74257411 original size:103 final size:103
Alignment explanation
Indices: 74257273--74257482 Score: 357
Period size: 103 Copynumber: 2.0 Consensus size: 103
74257263 TTTACAAGAC
* *
74257273 AACAATTCTATTACTATTCAAAACTATAGTCTGTGTAGTATAGAGCAAAATGTATGCTTCTGGAA
1 AACAATTCTATTACAATTCAAAACTATAGTATGTGTAGTATAGAGCAAAATGTATGCTTCTGGAA
*
74257338 AAAGCAATTCTTCAACACTAGTAACCTACAAAAGATAG
66 AAAGCAATTCTTCAACACTAGCAACCTACAAAAGATAG
* * *
74257376 AACAATTCTATTACAATTTAAAACTATAGTATGTGTAGTATGGAGTAAAATGTATGCTTCTGGAA
1 AACAATTCTATTACAATTCAAAACTATAGTATGTGTAGTATAGAGCAAAATGTATGCTTCTGGAA
*
74257441 AAAGCATTTCTTCAACACTAGCAACCTACAAAAGATAG
66 AAAGCAATTCTTCAACACTAGCAACCTACAAAAGATAG
74257479 AACA
1 AACA
74257483 TGACAATTAG
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
103 100 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (103 bp):
AACAATTCTATTACAATTCAAAACTATAGTATGTGTAGTATAGAGCAAAATGTATGCTTCTGGAA
AAAGCAATTCTTCAACACTAGCAACCTACAAAAGATAG
Found at i:74262652 original size:25 final size:27
Alignment explanation
Indices: 74262615--74262667 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
74262605 TCAAACATGC
74262615 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
74262641 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
74262667 A
1 A
74262668 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:74264186 original size:32 final size:32
Alignment explanation
Indices: 74264149--74264213 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
74264139 AATGCTTACC
74264149 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
74264181 ATGCCCATCATCGATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
74264213 A
1 A
74264214 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:74268245 original size:26 final size:26
Alignment explanation
Indices: 74268209--74268318 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
74268199 TGATACAAAT
74268209 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
74268235 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
74268261 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
74268287 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
74268313 TGATAA
1 TGATAA
74268319 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:74273183 original size:16 final size:16
Alignment explanation
Indices: 74273158--74273188 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74273148 TAATAATTAG
74273158 ATAAGATTGAGGTGTT
1 ATAAGATTGAGGTGTT
*
74273174 ATAAGGTTGAGGTGT
1 ATAAGATTGAGGTGT
74273189 GTCTTGGTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
ATAAGATTGAGGTGTT
Found at i:74276188 original size:20 final size:20
Alignment explanation
Indices: 74276163--74276225 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
74276153 TACATACATG
74276163 CCCCTATTTATACTTCGGTA
1 CCCCTATTTATACTTCGGTA
* * *
74276183 CCCCTAATTGCATA-TAC-GTG
1 CCCCT-ATT-TATACTTCGGTA
*
74276203 CCCCTATTTGTACTTCGGTA
1 CCCCTATTTATACTTCGGTA
74276223 CCC
1 CCC
74276226 TTGTTTGCAC
Statistics
Matches: 32, Mismatches: 7, Indels: 8
0.68 0.15 0.17
Matches are distributed among these distances:
18 2 0.06
19 5 0.16
20 17 0.53
21 5 0.16
22 3 0.09
ACGTcount: A:0.19, C:0.33, G:0.13, T:0.35
Consensus pattern (20 bp):
CCCCTATTTATACTTCGGTA
Found at i:74276217 original size:40 final size:40
Alignment explanation
Indices: 74276149--74276307 Score: 194
Period size: 40 Copynumber: 4.0 Consensus size: 40
74276139 TTATTGAATT
* * *
74276149 ATTGTACATACATGCCCCTATTTATACTTCGGTACCCCTA
1 ATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTA
* * *
74276189 ATTGCATATACGTGCCCCTATTTGTACTTCGGTACCCTTG
1 ATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTA
* * * * *
74276229 TTTGCACATATGTGCCCCTATTAGTA-TTCGATACCCCTG
1 ATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTA
* *
74276268 ATTGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTA
1 ATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTA
74276308 GTAGCACTTT
Statistics
Matches: 99, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 32 0.32
40 67 0.68
ACGTcount: A:0.20, C:0.29, G:0.15, T:0.36
Consensus pattern (40 bp):
ATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTA
Found at i:74279236 original size:23 final size:22
Alignment explanation
Indices: 74279202--74279245 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
74279192 TATAATAAAT
* *
74279202 ATATTTTTTTTTATTTTTAATC
1 ATATTTTATTTTAATTTTAATC
74279224 ATATTTATATTTTAATTTTAAT
1 ATATTT-TATTTTAATTTTAAT
74279246 TTTAATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (22 bp):
ATATTTTATTTTAATTTTAATC
Found at i:74281483 original size:16 final size:16
Alignment explanation
Indices: 74281462--74281506 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
74281452 TTTTATATGT
74281462 TATAAATTACATAATA
1 TATAAATTACATAATA
*
74281478 TATAAAAATAACATAATA
1 TAT--AAATTACATAATA
*
74281496 TAAAAATTACA
1 TATAAATTACA
74281507 AACTTAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 10 0.42
18 14 0.58
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (16 bp):
TATAAATTACATAATA
Found at i:74281491 original size:18 final size:17
Alignment explanation
Indices: 74281465--74281501 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
74281455 TATATGTTAT
*
74281465 AAATTACATAATATATAA
1 AAATAACATAATATA-AA
74281483 AAATAACATAATATAAA
1 AAATAACATAATATAAA
74281500 AA
1 AA
74281502 TTACAAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (17 bp):
AAATAACATAATATAAA
Found at i:74282499 original size:27 final size:26
Alignment explanation
Indices: 74282464--74282575 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
74282454 AGCATGGCTG
* * *
74282464 CCAGAACAGATAATGTGACGGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
74282490 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
74282518 CCAGAACAGAAATATGTGGCAAAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
74282545 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
74282572 CCAG
1 CCAG
74282576 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:74300772 original size:27 final size:27
Alignment explanation
Indices: 74300667--74300772 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
74300657 GCTGCTAGAA
* * *
74300667 CAGATAA-TGTGACGGAGTCACCAGAT
1 CAGATAATTGTGGCAGAGCCACCAGAT
* * *
74300693 ACAGATAATCGTGGCAGAGCCACCAAAA
1 -CAGATAATTGTGGCAGAGCCACCAGAT
74300721 CAGA-AATATGTGGCAGAGCCACCAGAT
1 CAGATAAT-TGTGGCAGAGCCACCAGAT
*
74300748 CAGATAATTGTGGCATAGCCACCAG
1 CAGATAATTGTGGCAGAGCCACCAG
74300773 GACGCTTCCT
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
26 3 0.05
27 47 0.71
28 16 0.24
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.16
Consensus pattern (27 bp):
CAGATAATTGTGGCAGAGCCACCAGAT
Found at i:74302215 original size:24 final size:24
Alignment explanation
Indices: 74302188--74302238 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
74302178 CTAGATTTCC
** *
74302188 TCCCTTATCTGCTCCTAGATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
74302212 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
74302236 TCC
1 TCC
74302239 TGACAGACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.39, G:0.04, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:74303338 original size:18 final size:16
Alignment explanation
Indices: 74303306--74303349 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
74303296 GAATTTGATT
74303306 TATTTTTATTTTTTAA
1 TATTTTTATTTTTTAA
74303322 TATTTTTATAATTTTTAA
1 TATTTTTAT--TTTTTAA
* *
74303340 AATATTTATT
1 TATTTTTATT
74303350 GATGTGACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 10 0.42
18 14 0.58
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTTTATTTTTTAA
Found at i:74303498 original size:19 final size:20
Alignment explanation
Indices: 74303474--74303513 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
74303464 AAAGAATTAG
74303474 TTATATA-TATTTTTAAAAA
1 TTATATATTATTTTTAAAAA
*
74303493 TTATATATTATTTTTATAAA
1 TTATATATTATTTTTAAAAA
74303513 T
1 T
74303514 AATAAGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TTATATATTATTTTTAAAAA
Found at i:74303507 original size:21 final size:20
Alignment explanation
Indices: 74303474--74303512 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
74303464 AAAGAATTAG
74303474 TTATATATATTTT-TAAAAA
1 TTATATATATTTTATAAAAA
74303493 TTATATATTATTTTTATAAA
1 TTATATA-TA-TTTTATAAA
74303513 TAATAAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.41
20 2 0.12
21 4 0.24
22 4 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTATATATATTTTATAAAAA
Found at i:74305648 original size:14 final size:14
Alignment explanation
Indices: 74305625--74305670 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
74305615 ATCTCACCCC
*
74305625 AAATATAGATACAA
1 AAATACAGATACAA
74305639 AAATACAGATAC-A
1 AAATACAGATACAA
**
74305652 GTATACAGATACAA
1 AAATACAGATACAA
74305666 AAATA
1 AAATA
74305671 ATAGATTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.61, C:0.11, G:0.09, T:0.20
Consensus pattern (14 bp):
AAATACAGATACAA
Found at i:74307307 original size:15 final size:15
Alignment explanation
Indices: 74307287--74307316 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
74307277 GAGCTTGTCC
74307287 TTTTATCATCTACGA
1 TTTTATCATCTACGA
74307302 TTTTATCATCTACGA
1 TTTTATCATCTACGA
74307317 CGAGTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.47
Consensus pattern (15 bp):
TTTTATCATCTACGA
Found at i:74319114 original size:17 final size:17
Alignment explanation
Indices: 74319092--74319143 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 17
74319082 GAGAGTTGAG
74319092 AAAAGAATAAAGAAAAT
1 AAAAGAATAAAGAAAAT
74319109 AAAAGAGACTAAA-AAAAT
1 AAAAGA-A-TAAAGAAAAT
*
74319127 ACAATGAA-AAAGAAAAT
1 A-AAAGAATAAAGAAAAT
74319144 CATTTTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
16 3 0.10
17 11 0.37
18 8 0.27
19 8 0.27
ACGTcount: A:0.73, C:0.04, G:0.12, T:0.12
Consensus pattern (17 bp):
AAAAGAATAAAGAAAAT
Found at i:74319292 original size:16 final size:16
Alignment explanation
Indices: 74319271--74319301 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
74319261 ACGGTATTCT
74319271 ATATTTTATAGTAGCG
1 ATATTTTATAGTAGCG
74319287 ATATTTTATAGTAGC
1 ATATTTTATAGTAGC
74319302 AAAGCAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.16, T:0.45
Consensus pattern (16 bp):
ATATTTTATAGTAGCG
Found at i:74319788 original size:15 final size:15
Alignment explanation
Indices: 74319764--74319797 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
74319754 AGTTATGTCT
* *
74319764 ATGTATGGAATTATA
1 ATGTAAGGAATTAGA
74319779 ATGTAAGGAATTAGA
1 ATGTAAGGAATTAGA
74319794 ATGT
1 ATGT
74319798 CAAAAAAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (15 bp):
ATGTAAGGAATTAGA
Found at i:74324116 original size:153 final size:152
Alignment explanation
Indices: 74323605--74324116 Score: 636
Period size: 153 Copynumber: 3.4 Consensus size: 152
74323595 CGGTGAAAGG
* ** *
74323605 TAATGCAGACGTTGAAGCAGCCTCTCTTGACAGATGGACATGGCCTGTTGATTTAATGGTTGTCA
1 TAATGCAGACGTTGAAGCAGCCTCTCTTGACAGATGGACATGGTCTGTCAATTCAATGGTTGTCA
* *** *
74323670 TTGTGGCTGCAGCTACTCCTGTTTCATCATCTTCATAGGAAGGAACTATAGCAACCGGTTCCACA
66 TTGTGGCTGCGGCTACTCCTGTTTCATCATCTTTGGAGGAAGGAATTATAGCAACCGGTTCCACA
* *
74323735 GTATCTATATCACTTGGTGTGGA
131 -CATCTATATCACTTGGCGTGGA
* * * *
74323758 TAATGCAGACATTGAAGCAGCCTCTCTTGACAGATGGAAATGATCTGTCGATTCAATGGTTGTCA
1 TAATGCAGACGTTGAAGCAGCCTCTCTTGACAGATGGACATGGTCTGTCAATTCAATGGTTGTCA
* * * * * * *
74323823 TTGCGGCTGAGGCTACTCCTGTATCATTATCTTTGGCGAAAGGAATTATAGCAACCGGTT--TCA
66 TTGTGGCTGCGGCTACTCCTGTTTCATCATCTTTGGAGGAAGGAATTATAGCAACCGGTTCCACA
* **
74323886 CATCT-TCATCACTTGGCATTAA
131 CATCTAT-ATCACTTGGCGTGGA
* * *
74323908 TAATGCAGATGTTGAAGCATCCTCTCTTGACAGATGGACATGGTCTGACAATTCAATGGTTGTCA
1 TAATGCAGACGTTGAAGCAGCCTCTCTTGACAGATGGACATGGTCTGTCAATTCAATGGTTGTCA
* *
74323973 TTGTGGCTGCGGCTACTTCTGTTTCATCATGTTTGGAGGAAGGAATTATAGCAACCGGTTCCACT
66 TTGTGGCTGCGGCTACTCCTGTTTCATCATCTTTGGAGGAAGGAATTATAGCAACCGGTTCCAC-
* * *
74324038 ACATCTATATTACTAGGGGTGGA
130 ACATCTATATCACTTGGCGTGGA
* **
74324061 TAATGCAGACGTGGAAGCAGCCTCTCTTGACA-AACGAGCATGGTCTGTCAATTCAA
1 TAATGCAGACGTTGAAGCAGCCTCTCTTGACAGATGGA-CATGGTCTGTCAATTCAA
74324117 GAACCTCAAC
Statistics
Matches: 302, Mismatches: 51, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
149 1 0.00
150 125 0.41
151 2 0.01
152 4 0.01
153 169 0.56
154 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (152 bp):
TAATGCAGACGTTGAAGCAGCCTCTCTTGACAGATGGACATGGTCTGTCAATTCAATGGTTGTCA
TTGTGGCTGCGGCTACTCCTGTTTCATCATCTTTGGAGGAAGGAATTATAGCAACCGGTTCCACA
CATCTATATCACTTGGCGTGGA
Found at i:74325144 original size:3 final size:3
Alignment explanation
Indices: 74325136--74325166 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
74325126 GAGATTTATC
74325136 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
74325167 GCTTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:74325444 original size:19 final size:19
Alignment explanation
Indices: 74325420--74325457 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
74325410 TTTAAGTAAG
74325420 GCTTAAATGAAAAATTAGC
1 GCTTAAATGAAAAATTAGC
74325439 GCTTAAATGAAAAATTAGC
1 GCTTAAATGAAAAATTAGC
74325458 ACTAAGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (19 bp):
GCTTAAATGAAAAATTAGC
Found at i:74329766 original size:30 final size:30
Alignment explanation
Indices: 74329732--74329791 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
74329722 AGCAAAAAAC
*
74329732 AAGTTATCTTTTATGTATTTTCTAAAAAGA
1 AAGTTATATTTTATGTATTTTCTAAAAAGA
74329762 AAGTTATATTTTATGTATTTTCTAAAAAGA
1 AAGTTATATTTTATGTATTTTCTAAAAAGA
74329792 GCAAGAAGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (30 bp):
AAGTTATATTTTATGTATTTTCTAAAAAGA
Found at i:74330891 original size:156 final size:156
Alignment explanation
Indices: 74330588--74330902 Score: 576
Period size: 156 Copynumber: 2.0 Consensus size: 156
74330578 TGTTTTAGGG
74330588 GGAAATTTTCAGCAAATCGCGCCATTAGGGAGCGTTTTTGTCATGTTAGCATAAAACGCGCTAAC
1 GGAAATTTTCAGCAAATCGCGCCATTAGGGAGCGTTTTTGTCATGTTAGCATAAAACGCGCTAAC
*
74330653 GTAGACTCGCTTTGCTAATGTGGCGAAAACGCTCCCTAAAGGCGCACTTTGCTCAGTGTTTTTAA
66 GTAGACTCGCTTTGCTAATGTGGCAAAAACGCTCCCTAAAGGCGCACTTTGCTCAGTGTTTTTAA
74330718 CCCAACGGCTAATTTTTTTGACCGTT
131 CCCAACGGCTAATTTTTTTGACCGTT
74330744 GGAAATTTTCAGCAAATCGCGCCATTAGGGAGCGTTTTTGTCATGTTAGCATAAAACGCGCTAAC
1 GGAAATTTTCAGCAAATCGCGCCATTAGGGAGCGTTTTTGTCATGTTAGCATAAAACGCGCTAAC
* * *
74330809 GTAGACTCGCTTTGCTGATGTGGCAAAAACGCTCCCCTAAGGGCGCGCTTTGCTCAGTGTTTTTA
66 GTAGACTCGCTTTGCTAATGTGGCAAAAACGCT-CCCTAAAGGCGCACTTTGCTCAGTGTTTTTA
*
74330874 ACCCAACGGCTAATTTTTTTGACTGTT
130 ACCCAACGGCTAATTTTTTTGACCGTT
74330901 GG
1 GG
74330903 GGGTCCAATG
Statistics
Matches: 153, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
156 96 0.63
157 57 0.37
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (156 bp):
GGAAATTTTCAGCAAATCGCGCCATTAGGGAGCGTTTTTGTCATGTTAGCATAAAACGCGCTAAC
GTAGACTCGCTTTGCTAATGTGGCAAAAACGCTCCCTAAAGGCGCACTTTGCTCAGTGTTTTTAA
CCCAACGGCTAATTTTTTTGACCGTT
Found at i:74331010 original size:21 final size:21
Alignment explanation
Indices: 74330981--74331030 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
74330971 ACAAAAAAAA
* *
74330981 CTCTAAAATTTCTCCTTAAAG
1 CTCTCAAATTTCTCATTAAAG
* *
74331002 CTCTCAAATTTTTCATTAAAT
1 CTCTCAAATTTCTCATTAAAG
*
74331023 TTCTCAAA
1 CTCTCAAA
74331031 ACTCTCTTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.34, C:0.22, G:0.02, T:0.42
Consensus pattern (21 bp):
CTCTCAAATTTCTCATTAAAG
Found at i:74331214 original size:18 final size:18
Alignment explanation
Indices: 74331191--74331271 Score: 69
Period size: 18 Copynumber: 4.6 Consensus size: 18
74331181 AAGGGTTAAT
74331191 TTTAATATTTGAATATTA
1 TTTAATATTTGAATATTA
***
74331209 TTTAATATTTTTTTATTTA
1 TTTAATATTTGAATA-TTA
* *
74331228 TGTAAT-TTT-AAT-TAA
1 TTTAATATTTGAATATTA
*
74331243 TTTTAATTTTTGAATATTA
1 -TTTAATATTTGAATATTA
74331262 TTTAATATTT
1 TTTAATATTT
74331272 TTTTCATTTA
Statistics
Matches: 48, Mismatches: 10, Indels: 10
0.71 0.15 0.15
Matches are distributed among these distances:
15 2 0.04
16 5 0.10
17 4 0.08
18 27 0.56
19 10 0.21
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (18 bp):
TTTAATATTTGAATATTA
Found at i:74331262 original size:53 final size:54
Alignment explanation
Indices: 74331186--74331299 Score: 212
Period size: 53 Copynumber: 2.1 Consensus size: 54
74331176 ATGATAAGGG
74331186 TTAATTTTAATATTTGAATATTATTTAATATTTTTTT-ATTTATGTAATTTTAA
1 TTAATTTTAATATTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
*
74331239 TTAATTTTAATTTTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
1 TTAATTTTAATATTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
74331293 TTAATTT
1 TTAATTT
74331300 GTATTTTATA
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
53 36 0.61
54 23 0.39
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.63
Consensus pattern (54 bp):
TTAATTTTAATATTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
Found at i:74332844 original size:17 final size:18
Alignment explanation
Indices: 74332802--74332844 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
74332792 ATGCCAGGTG
74332802 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
74332820 TGTATCCTAACCCTT-TA
1 TGTATCCTAACCCTTATA
*
74332837 TGTTTCCT
1 TGTATCCT
74332845 TTTTCCAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.21, C:0.28, G:0.07, T:0.44
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:74335187 original size:26 final size:26
Alignment explanation
Indices: 74335157--74335207 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
74335147 ACCAATGAAC
*
74335157 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
74335183 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
74335208 CTTTTCACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:74335214 original size:104 final size:104
Alignment explanation
Indices: 74335020--74335286 Score: 439
Period size: 104 Copynumber: 2.6 Consensus size: 104
74335010 TAACCGTTAT
* **
74335020 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
74335085 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
74335124 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
74335188 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
* **
74335228 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
74335287 TTATATACAA
Statistics
Matches: 153, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
103 25 0.16
104 127 0.83
105 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:74335645 original size:29 final size:29
Alignment explanation
Indices: 74335612--74335675 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
74335602 TAATCCACCA
74335612 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
74335641 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
74335671 CCCAA
1 CCCAA
74335676 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:74335649 original size:30 final size:30
Alignment explanation
Indices: 74335619--74335675 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
74335609 CCACCCAACT
74335619 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
74335648 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
74335676 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:74337367 original size:36 final size:36
Alignment explanation
Indices: 74337320--74337391 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
74337310 TTCTTTCTGC
74337320 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
74337356 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
74337392 TTCTTCTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.17, C:0.50, G:0.03, T:0.31
Consensus pattern (36 bp):
CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
Found at i:74337520 original size:21 final size:21
Alignment explanation
Indices: 74337508--74337548 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
74337498 CACGACCACA
*
74337508 GTTCCACAAGCCACAAACAAG
1 GTTCCACAAGCCACAACCAAG
74337529 GTTCCACAAGCCACAACCAA
1 GTTCCACAAGCCACAACCAA
74337549 CGTCAGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.37, G:0.12, T:0.10
Consensus pattern (21 bp):
GTTCCACAAGCCACAACCAAG
Found at i:74338075 original size:47 final size:47
Alignment explanation
Indices: 74338003--74338096 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
74337993 AATTAAATTA
** *
74338003 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTCATGCATATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATATAT
74338050 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATATAT
74338097 TAATGCATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (47 bp):
ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATATAT
Found at i:74338133 original size:36 final size:36
Alignment explanation
Indices: 74338093--74338165 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
74338083 AAGCATATAT
** *
74338093 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATACATAATGTTTAGCTTCATTTA
*
74338129 ATATTAATGCATATACATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATACATAATGTTTAGCTTCATTTA
74338165 A
1 A
74338166 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.47
Consensus pattern (36 bp):
ATATTAATGCATATACATAATGTTTAGCTTCATTTA
Found at i:74338324 original size:36 final size:36
Alignment explanation
Indices: 74338277--74338349 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
74338267 AAGCATATAT
* *
74338277 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
* *
74338313 ATATTAATGCATATATATAATGTTTTGCTTTATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
74338349 A
1 A
74338350 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:74338325 original size:184 final size:184
Alignment explanation
Indices: 74338037--74338565 Score: 859
Period size: 184 Copynumber: 2.9 Consensus size: 184
74338027 ATTTAAGTCA
* * * * *
74338037 TGCATATATATATACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATATATTAATG
1 TGCATATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATG
*
74338102 CATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATACATAATGTTTTGCTTCATTTAAG
66 CATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGTTTTGCTTCATTTAAG
74338167 TCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
131 TCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
* **
74338221 TGCATATATATATACTATAATTTTCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATG
1 TGCATATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATG
*
74338286 CATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGTTTTGCTTTATTTAAG
66 CATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGTTTTGCTTCATTTAAG
74338351 TCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
131 TCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
74338405 TGC--ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATATATA
1 TGCATATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGC------ATATATATA
*
74338468 TTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTGCTTCA
60 TTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGTTTTGCTTCA
*
74338533 TTTAAGTCAT--GCATAATTGCATATATATACCAT
125 TTTAAGTCATGCGCATAA-TGCATATATATTCCAT
74338566 AATTAGCAGA
Statistics
Matches: 322, Mismatches: 16, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
182 42 0.13
184 177 0.55
186 6 0.02
187 15 0.05
188 82 0.25
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (184 bp):
TGCATATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATG
CATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGTTTTGCTTCATTTAAG
TCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAAT
Found at i:74338513 original size:36 final size:36
Alignment explanation
Indices: 74338465--74338537 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
74338455 ATATATATAT
* * *
74338465 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
*
74338501 ATATTAAGGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
74338537 A
1 A
74338538 GTCATGCATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.47
Consensus pattern (36 bp):
ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
Found at i:74338547 original size:145 final size:145
Alignment explanation
Indices: 74338383--74338711 Score: 597
Period size: 145 Copynumber: 2.3 Consensus size: 145
74338373 TTCCATTTAA
*
74338383 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGC
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
*
74338448 CAAGCATATATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
66 CAAGCATATATAAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
74338513 ATATATAATGTTTTG
131 ATATATAATGTTTTG
74338528 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
74338593 CAAGCATATATAAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
66 CAAGCATATATAAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
74338658 ATATATAATGTTTTG
131 ATATATAATGTTTTG
* *
74338673 CTTCATTTAAGTCATGCGCAT-AGTGCATATATATTCCAT
1 CTTCATTTAAGTCAT--GCATAATTGCATATATATACCAT
74338712 TTAACTTCAT
Statistics
Matches: 178, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
145 158 0.89
146 16 0.09
147 4 0.02
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (145 bp):
CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
CAAGCATATATAAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
ATATATAATGTTTTG
Found at i:74338658 original size:36 final size:36
Alignment explanation
Indices: 74338610--74338682 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
74338600 ATATAAATAT
* * *
74338610 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
*
74338646 ATATTAAGGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
74338682 A
1 A
74338683 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.47
Consensus pattern (36 bp):
ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
Found at i:74338794 original size:333 final size:325
Alignment explanation
Indices: 74338199--74338875 Score: 1151
Period size: 333 Copynumber: 2.1 Consensus size: 325
74338189 TTCCATTTAA
* ** *
74338199 CTTCATTTAAGTCATGCATAATTGCATATATATATACTATAATTTTCAGGTTTAGCTTGAGTTAA
1 CTTCATTTAAGTCATGCATAATTGCA-ATATATATACCATAATTAGCAGATTTAGCTTGAGTTAA
*
74338264 GCCAAGCATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATAT
65 GCCAAGCATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATAT
*
74338329 ATAATGTTTTGCTTTATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAG
130 ATAATGTTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAG
74338394 TCATGCATAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATAT
195 TCATGCATAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGC--A-AT
74338459 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGT
257 ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGT
74338524 TTTG
322 TTTG
74338528 CTTCATTTAAGTCATGCATAATTGC-ATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAG
1 CTTCATTTAAGTCATGCATAATTGCAATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAG
74338592 CCAAGCATATATAAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCA
66 CCAAGC----AT--ATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCA
*
74338657 TATATATAATGTTTTGCTTCATTTAAGTCATGCGCATAGTGCATATATATTCCATTTAACTTCAT
125 TATATATAATGTTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCAT
*
74338722 TTAAGTCATGCATAATTGCATATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAG
190 TTAAGTCATGCATAATTGC--ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAG
*
74338787 C-ATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATA
253 CAATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATA
74338851 ATGTTTTG
318 ATGTTTTG
74338859 CTTCATTTAAGTCATGC
1 CTTCATTTAAGTCATGC
74338876 GCATATATAT
Statistics
Matches: 331, Mismatches: 9, Indels: 14
0.94 0.03 0.04
Matches are distributed among these distances:
327 41 0.12
329 25 0.08
331 89 0.27
333 132 0.40
335 44 0.13
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (325 bp):
CTTCATTTAAGTCATGCATAATTGCAATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAG
CCAAGCATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATA
TAATGTTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGT
CATGCATAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCAATATAT
ATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTG
Found at i:74338827 original size:186 final size:186
Alignment explanation
Indices: 74338528--74338880 Score: 629
Period size: 186 Copynumber: 1.9 Consensus size: 186
74338518 TAATGTTTTG
74338528 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
74338593 CAAGCATATATAAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
66 CAAGCA-ATAT-AATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
74338658 ATATATAATGTTTTGCTTCATTTAAGTCATGCGCATAGTGCATATATATTCCATTTAA
129 ATATATAATGTTTTGCTTCATTTAAGTCATGCGCATAGTGCATATATATTCCATTTAA
* *
74338716 CTTCATTTAAGTCATGCATAATTGCATATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAA
1 CTTCATTTAAGTCATGCATAATTGC--ATATATATACCATAATTAGCAGATTTAGCTTGAGTTAA
*
74338781 GCCAAGC-ATAT-ATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCAT
64 GCCAAGCAATATAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
74338844 ATATATAATGTTTTGCTTCATTTAAGTCATGCGCATA
129 ATATATAATGTTTTGCTTCATTTAAGTCATGCGCATA
74338881 TATATATTAA
Statistics
Matches: 160, Mismatches: 3, Indels: 6
0.95 0.02 0.04
Matches are distributed among these distances:
186 88 0.55
188 29 0.18
190 43 0.27
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (186 bp):
CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
CAAGCAATATAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATAT
ATATAATGTTTTGCTTCATTTAAGTCATGCGCATAGTGCATATATATTCCATTTAA
Found at i:74338843 original size:36 final size:36
Alignment explanation
Indices: 74338796--74338868 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
74338786 GCATATATAT
* *
74338796 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
*
74338832 ATATTAATGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
74338868 A
1 A
74338869 GTCATGCGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:74338920 original size:57 final size:52
Alignment explanation
Indices: 74338858--74338994 Score: 169
Period size: 46 Copynumber: 2.6 Consensus size: 52
74338848 ATAATGTTTT
74338858 GCTTCATTTAAGTCATGCGCATATATATATTAATGCATTATGCATATATTCCATTTA
1 GCTTCATTTAAGTCAT--GCATATATATATT-AT--ATTATGCATATATTCCATTTA
*
74338915 GCTTCATTTAGGTCATGC----ATATA-T-TATTATGCATATATTCCATTTA
1 GCTTCATTTAAGTCATGCATATATATATTATATTATGCATATATTCCATTTA
74338961 GCTTCATTTAAGTCATGCATATATTATATTATAT
1 GCTTCATTTAAGTCATGCATATA-TATATTATAT
74338995 ATATTATAAA
Statistics
Matches: 71, Mismatches: 2, Indels: 18
0.78 0.02 0.20
Matches are distributed among these distances:
46 38 0.54
48 1 0.01
50 2 0.03
51 9 0.13
52 1 0.01
53 3 0.04
55 2 0.03
57 15 0.21
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.45
Consensus pattern (52 bp):
GCTTCATTTAAGTCATGCATATATATATTATATTATGCATATATTCCATTTA
Found at i:74338945 original size:46 final size:46
Alignment explanation
Indices: 74338894--74338987 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
74338884 ATATTAATGC
*
74338894 ATTATGCATATATTCCATTTAGCTTCATTTAGGTCATGCATATATT
1 ATTATGCATATATTCCATTTAGCTTCATTTAAGTCATGCATATATT
74338940 ATTATGCATATATTCCATTTAGCTTCATTTAAGTCATGCATATATT
1 ATTATGCATATATTCCATTTAGCTTCATTTAAGTCATGCATATATT
74338986 AT
1 AT
74338988 ATTATATATA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.46
Consensus pattern (46 bp):
ATTATGCATATATTCCATTTAGCTTCATTTAAGTCATGCATATATT
Found at i:74339526 original size:36 final size:36
Alignment explanation
Indices: 74339479--74339552 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
74339469 TTTTATAAGT
74339479 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
1 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
74339515 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
1 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
74339551 AA
1 AA
74339553 CGCTTTAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.22, C:0.08, G:0.16, T:0.54
Consensus pattern (36 bp):
AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
Found at i:74342429 original size:21 final size:21
Alignment explanation
Indices: 74342403--74342444 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
74342393 ATTTTGCATA
74342403 CCTAAAATAGTTCTTTACATG
1 CCTAAAATAGTTCTTTACATG
74342424 CCTAAAATAGTTCTTTACATG
1 CCTAAAATAGTTCTTTACATG
74342445 TAATTATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (21 bp):
CCTAAAATAGTTCTTTACATG
Found at i:74342472 original size:21 final size:22
Alignment explanation
Indices: 74342448--74342490 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
74342438 TTACATGTAA
* *
74342448 TTATTTAG-TAAATTATATTGT
1 TTATGTAGTTAAATAATATTGT
74342469 TTATGTAGTTAAATAATATTGT
1 TTATGTAGTTAAATAATATTGT
74342491 AATTCGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TTATGTAGTTAAATAATATTGT
Found at i:74344705 original size:18 final size:18
Alignment explanation
Indices: 74344682--74344719 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
74344672 CTACCTAACA
74344682 TATTATCATT-ATTACTAT
1 TATTAT-ATTAATTACTAT
*
74344700 TATTATTTTAATTACTAT
1 TATTATATTAATTACTAT
74344718 TA
1 TA
74344720 ACATTAGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTATATTAATTACTAT
Found at i:74344851 original size:3 final size:3
Alignment explanation
Indices: 74344845--74344950 Score: 96
Period size: 3 Copynumber: 36.3 Consensus size: 3
74344835 TACCATTATG
* * * *
74344845 TTA TTA TTA TTA TTA TTA CTA ATA TCA CTA TTA TTA TTA TTA TTA TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
74344894 ATA -TA TTA TTA -TA CTT- TT- TTA TTA TTA CTA TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
74344935 CTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
74344951 ATTTTTTTTG
Statistics
Matches: 85, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
2 10 0.12
3 72 0.85
4 3 0.04
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:74345126 original size:3 final size:3
Alignment explanation
Indices: 74345105--74345326 Score: 80
Period size: 3 Copynumber: 73.7 Consensus size: 3
74345095 CAAACTTTAG
* * **
74345105 ATT ATTT ATT ATT -TGT ATT ATT GTT ATT ACT ATT -TAT ATTT ACC ATT
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT AT-T A-TT ATT ATT
* * * *
74345152 ATT ATT ACT ATT ATT -TT CACCT -TT ATT ACT ATT ATT ATT -TT TTT
1 ATT ATT ATT ATT ATT ATT -A-TT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
74345196 ATT -TT TTCT ATT ACT ATT ATC ATT ATT ATT AAT ACT AAT ATT AGT
1 ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * ** *
74345241 ATT CTT ATT ATT ACTT -TT ATT ATT ATC ATT AGC ATT ATT ATT TTT
1 ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* ** * * **
74345286 ACT CCT ACT ATT ATT ATT ATC AAC ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
74345327 CGTTTTCACC
Statistics
Matches: 160, Mismatches: 44, Indels: 30
0.68 0.19 0.13
Matches are distributed among these distances:
2 11 0.07
3 137 0.86
4 10 0.06
5 2 0.01
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:74345652 original size:29 final size:29
Alignment explanation
Indices: 74345619--74345676 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
74345609 GCAAGCTTCG
74345619 TATTTAGAAATTCGAGAAAATTGTGCCCT
1 TATTTAGAAATTCGAGAAAATTGTGCCCT
74345648 TATTTAGAAATTCGAGAAAATTGTGCCCT
1 TATTTAGAAATTCGAGAAAATTGTGCCCT
74345677 AACTTACTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (29 bp):
TATTTAGAAATTCGAGAAAATTGTGCCCT
Found at i:74358123 original size:10 final size:10
Alignment explanation
Indices: 74358108--74358137 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
74358098 CAACGCATTT
74358108 TTTGCATTCA
1 TTTGCATTCA
74358118 TTTGCATTCA
1 TTTGCATTCA
74358128 -TTGCATTCA
1 TTTGCATTCA
74358137 T
1 T
74358138 GCATCAGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50
Consensus pattern (10 bp):
TTTGCATTCA
Found at i:74358131 original size:9 final size:9
Alignment explanation
Indices: 74358109--74358141 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
74358099 AACGCATTTT
74358109 TTGCATTCA
1 TTGCATTCA
74358118 TTTGCATTCA
1 -TTGCATTCA
74358128 TTGCATTCA
1 TTGCATTCA
74358137 -TGCAT
1 TTGCAT
74358142 CAGCATTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 5 0.22
9 9 0.39
10 9 0.39
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (9 bp):
TTGCATTCA
Found at i:74366303 original size:43 final size:43
Alignment explanation
Indices: 74366250--74366488 Score: 191
Period size: 43 Copynumber: 5.5 Consensus size: 43
74366240 GGTGATGGGC
*
74366250 CTTAAACCCCTAAGTAGTAGGGTAACAAGCTGAATTTACATAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACATAT
* * ** ** * **
74366293 CTTAACCCCCTAAGCAGTAGGGAAAC-AGACCAAAGAT-GATGGGC
1 CTTAAACCCCTAAGCAGTAGGGTAACAAG-CTGAATTTACAT--AT
*
74366337 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACATAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACATAT
* * * ** * **
74366380 CTTAACCCCCTAAGCAGTAGGGAAAC-AGATCGAAGGT-GATGGGC
1 CTTAAACCCCTAAGCAGTAGGGTAACAAGCT-GAATTTACAT--AT
* *
74366424 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACATAT
74366467 CTT-AACCCCTTAAGCAGTAGGG
1 CTTAAACCCC-TAAGCAGTAGGG
74366489 AAATAGACCG
Statistics
Matches: 146, Mismatches: 39, Indels: 22
0.71 0.19 0.11
Matches are distributed among these distances:
42 14 0.10
43 70 0.48
44 56 0.38
45 6 0.04
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.21
Consensus pattern (43 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACATAT
Found at i:74366314 original size:87 final size:87
Alignment explanation
Indices: 74366170--74366931 Score: 850
Period size: 87 Copynumber: 8.7 Consensus size: 87
74366160 CAAGCCTTAC
* * * *
74366170 CCCCTAAGCAGTGGGGTAACA-GCTGAATTTATAGATCTTAACCCCTTAAGCAGTAGGGAAATAG
1 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
*
74366234 ATCGAAGGTGATGGGCCTTAAA
66 ATCGAAGATGATGGGCCTTAAA
* * *
74366256 CCCCTAAGTAGTAGGGTAACAAGCTGAATTTACATATCTTAACCCCCTAAGCAGTAGGGAAACAG
1 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
* *
74366321 ACCAAAGATGATGGGCCTTAAA
66 ATCGAAGATGATGGGCCTTAAA
*
74366343 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACATATCTTAACCCCCTAAGCAGTAGGGAAACAG
1 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
*
74366408 ATCGAAGGTGATGGGCCTTAAA
66 ATCGAAGATGATGGGCCTTAAA
* *
74366430 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCTTAAGCAGTAGGGAAATAG
1 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
* *
74366495 ACCGAAGGTGATGGGCCTTAAA
66 ATCGAAGATGATGGGCCTTAAA
* * * *
74366517 CCCCTAAGTAGTAGGGTAATAGGATGAATTTACAGATCTTAACCCCCTAAGTAGTA-GGAAACAG
1 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
* *
74366581 ATCGAAGGTGATAGGCCTTAAA
66 ATCGAAGATGATGGGCCTTAAA
* * * ** * **
74366603 TCCCTAAGCAGTAGGGCAACAGGCTAGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGG-AGT
1 CCCCTAAGCAGTAGGGTAACAGGCT-GAATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAAC
* * * ** *
74366667 AGATCAAAGACGGTGAACCTTAAC
64 AGATCGAAGATGATGGGCCTTAAA
* * ** * * *
74366691 CCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCG-AGCA
1 CCCCTAAGCAGTAGGGTAACAGGCT-GAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
* * * * * ** *
74366755 CATCAAAAACGGTAAGCCTTAAC
65 GATCGAAGATGATGGGCCTTAAA
* * * * * *
74366778 CCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAATAGTGG-AGC
1 CCCCTAAGCAGTAGGGTAACAGGCT-GAATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAAC
* * *
74366842 AGATCGAAGACGATGAGCCTTAAC
64 AGATCGAAGATGATGGGCCTTAAA
* * * * *
74366866 CCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACATATCTTATCACCCTAAGCAGTAGGGTAACA
1 CCCCTAAGCAGTAGGGTAACAGGCTG-AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
74366931 G
65 G
74366932 GCTGAAAATT
Statistics
Matches: 598, Mismatches: 71, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
86 66 0.11
87 378 0.63
88 152 0.25
89 2 0.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (87 bp):
CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
ATCGAAGATGATGGGCCTTAAA
Found at i:74366653 original size:44 final size:43
Alignment explanation
Indices: 74366257--74366958 Score: 198
Period size: 44 Copynumber: 16.1 Consensus size: 43
74366247 GGCCTTAAAC
* * * * * *
74366257 CCCTAAGTAGTAGGGTAACAAGCTGAATTTACATATCTTAACC
1 CCCTAAGCAGTAGGGTAACAGGCTGAAATTACAGATCTTATCT
* * ** * ** ** *
74366300 CCCTAAGCAGTAGGGAAACAGACCAAAGATGATGGGCCTTAAAC-
1 CCCTAAGCAGTAGGGTAACAGGCTGAA-ATTACAGATCTT-ATCT
* * * *
74366344 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACATATCTTAACC
1 CCCTAAGCAGTAGGGTAACAGGCTGAAATTACAGATCTTATCT
* * * * ** ** *
74366387 CCCTAAGCAGTAGGGAAACA-GATCGAAGGTGATGGGCCTTAAAC-
1 CCCTAAGCAGTAGGGTAACAGGCT-GAA-ATTACAGATCTT-ATCT
* *
74366431 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAAC-
1 CCCTAAGCAGTAGGGTAACAGGCTGAAATTACAGATCTTATCT
* * * * * * ** ** *
74366473 CCCTTAAGCAGTAGGGAAATAGACCGAAGGTGATGGGCCTTAAAC-
1 CCC-TAAGCAGTAGGGTAACAGGCTGAA-ATTACAGATCTT-ATCT
* * * * * *
74366518 CCCTAAGTAGTAGGGTAATAGGATGAATTTACAGATCTTAACC
1 CCCTAAGCAGTAGGGTAACAGGCTGAAATTACAGATCTTATCT
* * * * * * ** **
74366561 CCCTAAGTAGTA-GGAAACA-GATCGAAGGTGATAGGCCTTAAAT
1 CCCTAAGCAGTAGGGTAACAGGCT-GAA-ATTACAGATCTTATCT
* *
74366604 CCCTAAGCAGTAGGGCAACAGGCTAGAAATTACAGATCTTGTCT
1 CCCTAAGCAGTAGGGTAACAGGCT-GAAATTACAGATCTTATCT
** * * * * * * *
74366648 CCCTAAGCAGTAGCGG-AGTA-GATCAAA-GACGGTGAACCTTAACC
1 CCCTAAGCAGTAG-GGTAACAGGCTGAAATTAC--AG-ATCTTATCT
* *
74366692 CCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTGTCT
1 CCCTAAGCAGTAGGGTAACAGGCT-GAAATTACAGATCTTATCT
* * * * * * * *
74366736 CCCTAAGCAGTAGCG-AGCA--CATCAAA-AACGGTAAGCCTTAACC
1 CCCTAAGCAGTAGGGTAACAGGC-TGAAATTACAG--A-TCTTATCT
*
74366779 CCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGCT-GAAATTACAGATCTTATCT
* * * * * * *
74366823 CCCTAAGCAATAGTGG-AGCA-GATCG-AA-GACGATGAGCCTTAACC
1 CCCTAAGCAGTAG-GGTAACAGGCT-GAAATTAC-A-GA-TCTTATCT
* *
74366867 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACATATCTTATCA
1 CCCTAAGCAGTAGGGTAACAGGCTG-AAATTACAGATCTTATCT
* * *
74366911 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTTCAAACCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGCTG-AAATTACAGATCTTATCT
74366955 CCCT
1 CCCT
74366959 GAAGTTGCAG
Statistics
Matches: 477, Mismatches: 141, Indels: 81
0.68 0.20 0.12
Matches are distributed among these distances:
40 3 0.01
41 11 0.02
42 30 0.06
43 144 0.30
44 241 0.51
45 31 0.06
46 10 0.02
47 7 0.01
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.21
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGCTGAAATTACAGATCTTATCT
Found at i:74367053 original size:45 final size:44
Alignment explanation
Indices: 74366943--74367072 Score: 145
Period size: 44 Copynumber: 2.9 Consensus size: 44
74366933 CTGAAAATTT
* * *
74366943 CAAACCTTATCTCCCTGAAGTTGCAGTGCAGCAGGTTGAAGTCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCA
* * *
74366987 CAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGAT-A
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TCA
* * * *
74367031 GCAAATCTTATTTCCCTAAAGTTGCAATGGAACAGATTGAAG
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
74367073 CTATAAATAA
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
44 36 0.51
45 35 0.49
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCA
Found at i:74367157 original size:41 final size:41
Alignment explanation
Indices: 74367081--74367158 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
74367071 AGCTATAAAT
* *
74367081 AAACATATCTTATCTCTCTGAAGTTGCAGGAGAGCAGATCA
1 AAACAGATCTTATCTCTCTGAAGTTACAGGAGAGCAGATCA
*
74367122 AAACAGATCTTATTTCTCTGAAGTTACAGTG-GAGCAG
1 AAACAGATCTTATCTCTCTGAAGTTACAG-GAGAGCAG
74367159 GTTAAAGCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
41 32 0.97
42 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (41 bp):
AAACAGATCTTATCTCTCTGAAGTTACAGGAGAGCAGATCA
Found at i:74371363 original size:126 final size:126
Alignment explanation
Indices: 74371125--74371377 Score: 355
Period size: 126 Copynumber: 2.0 Consensus size: 126
74371115 GGCCAAACAT
* ** ** *
74371125 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTTGAAATTTTGCTGACATTGCATC
1 GAACTACTGTAGAAAAAGACCATCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAGGGCATA
* * * * *
74371190 CTTCTTGAAGCGTTTTTGACACTAGTTGTTCAAAAACGTCTTTTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCATTTTTGACACTAGTTGTTCAAAAACATCTTCTCAAAATTATTTTTGCAG
* *
74371251 GAACTACTGTAGAAAAAGACCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCAT-ACAGGGCAT
1 GAACTACTGTAGAAAAAGACCATCCACGTGGGAGCTTTTTTCAGAAATTTTGC-TGACAGGGCAT
* *
74371315 ACTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTGCAG
65 ACTGCTTGAAGCATTTTTGACACTAGTTGTTCAAAAACATCTTCTCAAAATTATTTTTGCAG
74371377 G
1 G
74371378 GTAAAAAAAG
Statistics
Matches: 111, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
126 110 0.99
127 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGACCATCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAGGGCATA
CTGCTTGAAGCATTTTTGACACTAGTTGTTCAAAAACATCTTCTCAAAATTATTTTTGCAG
Found at i:74371501 original size:34 final size:32
Alignment explanation
Indices: 74371418--74371556 Score: 153
Period size: 34 Copynumber: 4.3 Consensus size: 32
74371408 ACACAATATT
* *
74371418 ATTTTTTAAAAAC-TAAACCGTAATTTAATTA
1 ATTTTTTAAAACCTTAAACCCTAATTTAATTA
74371449 A--TTTT--AACCTTAAACCCTAATTTAATTA
1 ATTTTTTAAAACCTTAAACCCTAATTTAATTA
*
74371477 ATTTATTTAAAACCTTTAAACCCTAATTTACTTA
1 ATTT-TTTAAAACC-TTAAACCCTAATTTAATTA
* *
74371511 ATTTATTTAAAAACCATAAACCTTAATTTAATTA
1 ATTT-TTT-AAAACCTTAAACCCTAATTTAATTA
74371545 ATTTTTATAAAA
1 ATTTTT-TAAAA
74371557 TAACAGTAAA
Statistics
Matches: 93, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
27 3 0.03
28 18 0.19
29 4 0.04
30 1 0.01
31 4 0.04
33 10 0.11
34 47 0.51
35 6 0.06
ACGTcount: A:0.43, C:0.13, G:0.01, T:0.43
Consensus pattern (32 bp):
ATTTTTTAAAACCTTAAACCCTAATTTAATTA
Found at i:74371572 original size:36 final size:34
Alignment explanation
Indices: 74371459--74371576 Score: 123
Period size: 34 Copynumber: 3.4 Consensus size: 34
74371449 ATTTTAACCT
* * *
74371459 TAAACCCTAATTTAATTAATTTATTT-AAAACCTT
1 TAAACCTTAATTTAATTAATTTATTTAAAAAAC-A
* * *
74371493 TAAACCCTAATTTACTTAATTTATTTAAAAACCA
1 TAAACCTTAATTTAATTAATTTATTTAAAAAACA
74371527 TAAACCTTAATTTAATTAATTT-TTATAAAATAACA
1 TAAACCTTAATTTAATTAATTTATT-TAAAA-AACA
*
74371562 GTAAATCTTAATTTA
1 -TAAACCTTAATTTA
74371577 TTTTTAAAAT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
33 2 0.03
34 50 0.68
35 9 0.12
36 13 0.18
ACGTcount: A:0.44, C:0.13, G:0.01, T:0.42
Consensus pattern (34 bp):
TAAACCTTAATTTAATTAATTTATTTAAAAAACA
Found at i:74371630 original size:33 final size:34
Alignment explanation
Indices: 74371593--74371668 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 34
74371583 AAATCCACTA
* * * *
74371593 AAACCCT-ACCTTAACTTATTTTAACAAAAATCT
1 AAACCCTAAACTTAAATTATTTCAACAAAAACCT
*
74371626 AAACCCTAAACTTAAATTATTTCAACAAAACCCT
1 AAACCCTAAACTTAAATTATTTCAACAAAAACCT
74371660 AAA-CCTAAA
1 AAACCCTAAA
74371669 AACCCTAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 13 0.35
34 24 0.65
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (34 bp):
AAACCCTAAACTTAAATTATTTCAACAAAAACCT
Found at i:74374386 original size:43 final size:46
Alignment explanation
Indices: 74374320--74374444 Score: 177
Period size: 43 Copynumber: 2.8 Consensus size: 46
74374310 CTTCAGTATG
*
74374320 AGTTGCCTTGAGTTGGCTTCGGGCCATGGTATAGGCATT-C-G-GA
1 AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGCATTCCAGCGA
*
74374363 GAG-TACCTTGAGTTGGCTTCGGGCCATGGTATAGGTATTCCAAGCGA
1 -AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGCATTCC-AGCGA
*
74374410 AGTTACCTTGAGTTGGCTTCGGGCCATTGTATAGG
1 AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGG
74374445 TACCTATCGT
Statistics
Matches: 73, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
43 34 0.47
44 3 0.04
46 3 0.04
47 33 0.45
ACGTcount: A:0.18, C:0.18, G:0.33, T:0.30
Consensus pattern (46 bp):
AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGCATTCCAGCGA
Found at i:74374435 original size:47 final size:44
Alignment explanation
Indices: 74374319--74374446 Score: 179
Period size: 47 Copynumber: 2.9 Consensus size: 44
74374309 ACTTCAGTAT
* *
74374319 GAGTTGCCTTGAGTTGGCTTCGGGCCATGGTATAGGCATTCGGA
1 GAGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGTATTCGGA
74374363 GAG-TACCTTGAGTTGGCTTCGGGCCATGGTATAGGTATTCCAAGCGA
1 GAGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGTATT-C--G-GA
*
74374410 -AGTTACCTTGAGTTGGCTTCGGGCCATTGTATAGGTA
1 GAGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGTA
74374447 CCTATCGTAT
Statistics
Matches: 76, Mismatches: 3, Indels: 7
0.88 0.03 0.08
Matches are distributed among these distances:
43 34 0.45
44 4 0.05
46 3 0.04
47 35 0.46
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.30
Consensus pattern (44 bp):
GAGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGTATTCGGA
Found at i:74378958 original size:15 final size:15
Alignment explanation
Indices: 74378938--74378969 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
74378928 GCAAGCAGAG
74378938 TTAGAAAACTACCCT
1 TTAGAAAACTACCCT
74378953 TTAGAAAACTACCCT
1 TTAGAAAACTACCCT
74378968 TT
1 TT
74378970 GTATACCTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (15 bp):
TTAGAAAACTACCCT
Found at i:74383720 original size:66 final size:66
Alignment explanation
Indices: 74383530--74383720 Score: 213
Period size: 66 Copynumber: 2.9 Consensus size: 66
74383520 CCCAAACTAG
* * * * * *
74383530 TGAGCTTACTGACTTGGGTTACACGGCCAAGCCACATGTCCGTGTGCTAGGCCGTGAGAAAAATG
1 TGAGCATACTGACTTGTGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGAAAAATG
74383595 A
66 A
* * * * * * *
74383596 TGAGCATACTAACTTGTGACACACGACCAAGCCATACGGCCGTGTGCTAGGCCCTGTGAAAACTG
1 TGAGCATACTGACTTGTGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGAAAAAT-
74383661 GA
65 GA
* * * *
74383663 -GGGTATACTGACTTATGTCACACGGCCAAGTCACACGCCCGTGTGCTAGGCCGTGTGA
1 TGAGCATACTGACTTGTGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGA
74383721 GGTTACTAAC
Statistics
Matches: 102, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
66 100 0.98
67 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (66 bp):
TGAGCATACTGACTTGTGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGAAAAATG
A
Found at i:74384664 original size:35 final size:34
Alignment explanation
Indices: 74384625--74384735 Score: 91
Period size: 35 Copynumber: 3.2 Consensus size: 34
74384615 GAGCCCAACT
* *
74384625 CTAGTTGGATGAACAAACAGTAATTGTGCCCAGCA
1 CTAGTCGGATAAACAAACAGT-ATTGTGCCCAGCA
** * *
74384660 CTAGTCGGATAAACTGACGGTTTTGTGCCCAGCA
1 CTAGTCGGATAAACAAACAGTATTGTGCCCAGCA
* * *
74384694 CTAGTCAGACAAACTGACAA-AG-ATTGTGCCCAGCG
1 CTAGTCGGATAAAC--A-AACAGTATTGTGCCCAGCA
74384729 CTAGTCG
1 CTAGTCG
74384736 ATTATATCGA
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
34 24 0.41
35 33 0.56
36 1 0.02
37 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (34 bp):
CTAGTCGGATAAACAAACAGTATTGTGCCCAGCA
Found at i:74392175 original size:21 final size:21
Alignment explanation
Indices: 74392151--74392321 Score: 103
Period size: 21 Copynumber: 8.1 Consensus size: 21
74392141 TTGACTTTCC
* *
74392151 GTTTAGCTCTCATGAGCTTCT
1 GTTTAACTCTTATGAGCTTCT
* *
74392172 GTTTAACTCATATGAG-TTTT
1 GTTTAACTCTTATGAGCTTCT
* * * *
74392192 CGTTTAACCCTAATG-GGTTTT
1 -GTTTAACTCTTATGAGCTTCT
* * *
74392213 CGTTCAGCTCTTTTGAGCTTCT
1 -GTTTAACTCTTATGAGCTTCT
* * *
74392235 GTTTAACACTTATGGGTTTCT
1 GTTTAACTCTTATGAGCTTCT
* *
74392256 GTTCAGCTCTTATGAGCTTCT
1 GTTTAACTCTTATGAGCTTCT
* * * *
74392277 GTTCAACCCTTATGGGTTTCT
1 GTTTAACTCTTATGAGCTTCT
* * *
74392298 GTTTAGCACTTATGTGCTTCT
1 GTTTAACTCTTATGAGCTTCT
74392319 GTT
1 GTT
74392322 CAGCCTTAGG
Statistics
Matches: 113, Mismatches: 34, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
20 4 0.04
21 105 0.93
22 4 0.04
ACGTcount: A:0.16, C:0.20, G:0.19, T:0.46
Consensus pattern (21 bp):
GTTTAACTCTTATGAGCTTCT
Found at i:74392252 original size:42 final size:42
Alignment explanation
Indices: 74392193--74392321 Score: 179
Period size: 42 Copynumber: 3.1 Consensus size: 42
74392183 ATGAGTTTTC
* *
74392193 GTTTAACCCTAATGGGTTT-TCGTTCAGCTCTTTTGAGCTTCT
1 GTTTAACCCTTATGGGTTTCT-GTTCAGCTCTTATGAGCTTCT
*
74392235 GTTTAACACTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCT
1 GTTTAACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCT
* * * *
74392277 GTTCAACCCTTATGGGTTTCTGTTTAGCACTTATGTGCTTCT
1 GTTTAACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCT
74392319 GTT
1 GTT
74392322 CAGCCTTAGG
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
42 77 0.99
43 1 0.01
ACGTcount: A:0.15, C:0.20, G:0.19, T:0.46
Consensus pattern (42 bp):
GTTTAACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCT
Found at i:74394054 original size:66 final size:66
Alignment explanation
Indices: 74393982--74394126 Score: 175
Period size: 66 Copynumber: 2.2 Consensus size: 66
74393972 TGCCCATGCA
* *
74393982 CTAGGCCGTGTGAAAAAT-GATGAGTATACTGACTTGTGATACACGGCCAAGCCACACACCGATG
1 CTAGGCCGTGTGAAAAATGGA-GAGTATACTGACTTATGATACACGGCCAAGCCACACACCCATG
74394046 TG
65 TG
* * * * * * *
74394048 CTAGGCCATTTGAAAACTGGAGGGTATATTGACTTATGTTACACGGCCAAGTCACACACCCATGT
1 CTAGGCCGTGTGAAAAATGGAGAGTATACTGACTTATGATACACGGCCAAGCCACACACCCATGT
74394113 G
66 G
* *
74394114 CTATGTCGTGTGA
1 CTAGGCCGTGTGA
74394127 GGCTACTAAC
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
66 63 0.97
67 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (66 bp):
CTAGGCCGTGTGAAAAATGGAGAGTATACTGACTTATGATACACGGCCAAGCCACACACCCATGT
G
Found at i:74400491 original size:42 final size:42
Alignment explanation
Indices: 74400382--74400539 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
74400372 AGTTCGTACA
* *
74400382 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGAAATCAAATA-CG
74400425 ATGCC-ACTATCCCAGACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACACGAAATCAAATACG
* * * *
74400467 ATGCCAACGTCCTAGACGTAGTCTTACACGTAAATTATAAGT-CG
1 ATGCCAACATCCCAGACGTGGTCTTACACG-AAATCA-AA-TACG
* **
74400511 ATGCCAACGTATCAGACGTGGTCTTACAC
1 ATGCCAACATCCCAGACGTGGTCTTACAC
74400540 AAAAACACAT
Statistics
Matches: 98, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.27
43 40 0.41
44 30 0.31
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGAAATCAAATACG
Found at i:74404300 original size:83 final size:84
Alignment explanation
Indices: 74404147--74404313 Score: 318
Period size: 84 Copynumber: 2.0 Consensus size: 84
74404137 TACTTCCGGA
*
74404147 AGAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCGTTCTTTTTTCTCTGATAGATGGT
1 AGAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCATTCTTTTTTCTCTGATAGATGGT
74404212 CAGAACTTCATCTGGGTTC
66 CAGAACTTCATCTGGGTTC
74404231 AGAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCATT-TTTTTTCTCTGATAGATGGT
1 AGAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCATTCTTTTTTCTCTGATAGATGGT
74404295 CAGAACTTCATCTGGGTTC
66 CAGAACTTCATCTGGGTTC
74404314 GAACCCTACT
Statistics
Matches: 82, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
83 39 0.48
84 43 0.52
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (84 bp):
AGAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCATTCTTTTTTCTCTGATAGATGGT
CAGAACTTCATCTGGGTTC
Found at i:74429186 original size:28 final size:28
Alignment explanation
Indices: 74429064--74429183 Score: 179
Period size: 28 Copynumber: 4.3 Consensus size: 28
74429054 TGTTTAGCAT
*
74429064 TTAGTGTGCGAGACATTAAGTATGGCAC
1 TTAGTGTGCGAGACATTGAGTATGGCAC
* *
74429092 TTAGTGTACAAGACATTGAGTATGGCAC
1 TTAGTGTGCGAGACATTGAGTATGGCAC
*
74429120 TTAGTGTGCGAGACATTGAATATGGCAC
1 TTAGTGTGCGAGACATTGAGTATGGCAC
*
74429148 TTAGTGTGTGAGACATTTGA-TATGGCAC
1 TTAGTGTGCGAGACA-TTGAGTATGGCAC
74429176 TTAGTGTG
1 TTAGTGTG
74429184 TGAAATTTTG
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
28 80 0.95
29 4 0.05
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.32
Consensus pattern (28 bp):
TTAGTGTGCGAGACATTGAGTATGGCAC
Found at i:74432224 original size:6 final size:6
Alignment explanation
Indices: 74432213--74432263 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
74432203 AGTTTATTTG
* * *
74432213 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTGT GTTTAT TGTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
74432261 TTT
1 TTT
74432264 CTTAGACTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.14, C:0.00, G:0.06, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:74440142 original size:3 final size:3
Alignment explanation
Indices: 74440134--74440497 Score: 142
Period size: 3 Copynumber: 120.0 Consensus size: 3
74440124 TAATTTAATA
* *
74440134 TAT TAT TATT TAT TAT TAT TAT T-T TAC TGT TACT TA- TATT TAT TAT
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TA-T TAT TA-T TAT TAT
* * * * *
74440180 CAT TAC TAT TAT TAC TAT TA- TAT TAC TAT TAT TAT T-T TCAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT
* * **
74440224 T-T TCAT TAT TAT TAT TAC TAT TAT TAT T-T TCAT TAT CTAC TGC TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT -TAT TAT TAT
** * * * * *
74440270 TATT TAT TAT CGT TAT TAC CAT TAT CAT TAC TAT TACT T-G TAT T-T
1 TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT
* * ** *
74440315 TAT TAT TAT GAT TAT TGAT T-T TATT TAT TAT T-T ATAA TAT GGT TGT
1 TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT -TAT TAT TAT TAT
* *
74440361 TAT TAT TAT TCCT TAT TTT CTAT TAT TAT TAT TAT TAT TAT TAT TAAT
1 TAT TAT TAT T-AT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* * * * *
74440409 TAC TAT TAC TAT TAT T-T CTTT TAT TAT T-T AAT AAAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT
** * * * * * *
74440454 CCT TTT TAT TAT TGT TAT TAC TAT T-G TAC TAT TAG TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
74440498 ACTTTCACCT
Statistics
Matches: 264, Mismatches: 67, Indels: 60
0.68 0.17 0.15
Matches are distributed among these distances:
2 21 0.08
3 206 0.78
4 37 0.14
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:74440345 original size:22 final size:23
Alignment explanation
Indices: 74440302--74440345 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
74440292 TATCATTACT
74440302 ATTACTTGTATTTTATTATTATG
1 ATTACTTGTATTTTATTATTATG
74440325 ATTA-TTG-ATTTTATTTATTAT
1 ATTACTTGTATTTTA-TTATTAT
74440346 TTATAATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.30
22 10 0.50
23 4 0.20
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.64
Consensus pattern (23 bp):
ATTACTTGTATTTTATTATTATG
Found at i:74444904 original size:28 final size:27
Alignment explanation
Indices: 74444872--74444936 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
74444862 CAAAATACAT
74444872 TAATACTAAAGTAAAAATAAATAT-TGTA
1 TAATA-TAAAGTAAAAA-AAATATATGTA
**
74444900 TAATAATAAAGTTTAAAAAATATATGTA
1 TAAT-ATAAAGTAAAAAAAATATATGTA
*
74444928 TCATATAAA
1 TAATATAAA
74444937 CAAATAATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
27 11 0.34
28 20 0.62
29 1 0.03
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (27 bp):
TAATATAAAGTAAAAAAAATATATGTA
Found at i:74444991 original size:27 final size:28
Alignment explanation
Indices: 74444939--74444996 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
74444929 CATATAAACA
* * *
74444939 AATAATAAAATGTGAATTTAATAAT-AT
1 AATAAAAAAATATGAATTTAAGAATAAT
74444966 AATAAAAAAATAT-AATTATAAGAATAAT
1 AATAAAAAAATATGAATT-TAAGAATAAT
74444994 AAT
1 AAT
74444997 TACATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 4 0.15
27 17 0.65
28 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (28 bp):
AATAAAAAAATATGAATTTAAGAATAAT
Found at i:74445292 original size:3 final size:3
Alignment explanation
Indices: 74445284--74445485 Score: 93
Period size: 3 Copynumber: 64.7 Consensus size: 3
74445274 ATAAAAATGT
* * * *
74445284 ATA ATA AT- ATA AAA ATGA CATA ATA ACA TATA AT- ATA ATT ATA ATGT
1 ATA ATA ATA ATA ATA AT-A -ATA ATA ATA -ATA ATA ATA ATA ATA AT-A
74445331 ATA AT- ATA A-A AGTA TATA TATA A-A ATA ATA TATA ATA TATA ATTA
1 ATA ATA ATA ATA A-TA -ATA -ATA ATA ATA ATA -ATA ATA -ATA A-TA
*
74445376 ATA A-A CAT- ATA AT- ATA ATA ATA ATA TATAA ATA ATA AT- GTA A-A
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA
* *
74445419 ATA ATA ATA ATTT ATGA AAA ATA ATA TATA ATAA ATA ATA ATA ATGA
1 ATA ATA ATA A-TA AT-A ATA ATA ATA -ATA AT-A ATA ATA ATA AT-A
74445466 ATA ATA TATA ATA A-A ATA AT
1 ATA ATA -ATA ATA ATA ATA AT
74445486 TATATAACAT
Statistics
Matches: 156, Mismatches: 14, Indels: 58
0.68 0.06 0.25
Matches are distributed among these distances:
2 20 0.13
3 91 0.58
4 41 0.26
5 4 0.03
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:74445306 original size:19 final size:18
Alignment explanation
Indices: 74445274--74445309 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
74445264 TAATGTATAG
*
74445274 ATAAAAATGTATAATAAT
1 ATAAAAATGCATAATAAT
74445292 ATAAAAATGACATAATAA
1 ATAAAAATG-CATAATAA
74445310 CATATAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (18 bp):
ATAAAAATGCATAATAAT
Found at i:74445358 original size:19 final size:19
Alignment explanation
Indices: 74445330--74445485 Score: 88
Period size: 19 Copynumber: 8.5 Consensus size: 19
74445320 AATTATAATG
74445330 TATAAT-ATAAAAGTATATA
1 TATAATAATAAAA-TATATA
*
74445349 TATAA-AATAATATATAATA
1 TATAATAATAAAATAT-ATA
74445368 TATAATTAATAAACATATA-A
1 TATAA-TAATAAA-ATATATA
74445388 TATAATAAT--AATATATA
1 TATAATAATAAAATATATA
*
74445405 AATAATAATGTAAAATA-ATA
1 TATAATAA--TAAAATATATA
*
74445425 -ATAATTTATGAAAA-ATA-A
1 TATAA-TAAT-AAAATATATA
74445443 TAT-ATAAT-AAATA-ATA
1 TATAATAATAAAATATATA
*
74445459 -ATAATGAATAATATATA-A
1 TATAAT-AATAAAATATATA
*
74445477 TAAAATAAT
1 TATAATAAT
74445486 TATATAACAT
Statistics
Matches: 109, Mismatches: 7, Indels: 43
0.69 0.04 0.27
Matches are distributed among these distances:
15 6 0.06
16 9 0.08
17 15 0.14
18 15 0.14
19 39 0.36
20 11 0.10
21 10 0.09
22 4 0.04
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.35
Consensus pattern (19 bp):
TATAATAATAAAATATATA
Found at i:74445449 original size:27 final size:26
Alignment explanation
Indices: 74445352--74445479 Score: 109
Period size: 27 Copynumber: 4.7 Consensus size: 26
74445342 GTATATATAT
74445352 AAAATAATATATAATATATAATTAATA
1 AAAATAATATATAATA-ATAATTAATA
*
74445379 AACAT-ATAATATAATAATAA-TATATA
1 AAAATAAT-ATATAATAATAATTA-ATA
* *
74445405 AATAATAATGTAAAATAATAATAATTTATGA
1 AA-AATAA--T-ATATAATAATAATTAAT-A
74445436 AAAATAATATATAATAAATAA-TAATA
1 AAAATAATATATAAT-AATAATTAATA
*
74445462 ATGAATAATATATAATAA
1 A-AAATAATATATAATAA
74445480 AATAATTATA
Statistics
Matches: 84, Mismatches: 7, Indels: 21
0.75 0.06 0.19
Matches are distributed among these distances:
25 2 0.02
26 15 0.18
27 36 0.43
28 7 0.08
30 20 0.24
31 4 0.05
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.34
Consensus pattern (26 bp):
AAAATAATATATAATAATAATTAATA
Found at i:74445499 original size:18 final size:15
Alignment explanation
Indices: 74445305--74445492 Score: 114
Period size: 14 Copynumber: 12.8 Consensus size: 15
74445295 AAAATGACAT
*
74445305 AATAACATATAATATA
1 AATAATATATAATA-A
*
74445321 ATTATAATGTATAATATA
1 A--ATAATATATAATA-A
*
74445339 AA-AGTATATATATAA
1 AATAATATATA-ATAA
74445354 AATAATATATAAT-A
1 AATAATATATAATAA
*
74445368 TAT-A-AT-TAATAA
1 AATAATATATAATAA
74445380 ACAT-ATA-AT-ATAA
1 A-ATAATATATAATAA
*
74445393 TAATAATATATAA-AT
1 -AATAATATATAATAA
* *
74445408 AATAATGTAAAATAA
1 AATAATATATAATAA
* *
74445423 TAATAATTTATGA-AA
1 -AATAATATATAATAA
74445438 AATAATATATAAT-A
1 AATAATATATAATAA
*
74445452 AATAATA-ATAAT-G
1 AATAATATATAATAA
74445465 AATAATATATAATAA
1 AATAATATATAATAA
74445480 AATAATTATATAA
1 AATAA-TATATAA
74445493 CATAAAAATA
Statistics
Matches: 136, Mismatches: 18, Indels: 36
0.72 0.09 0.19
Matches are distributed among these distances:
11 4 0.03
12 3 0.02
13 22 0.16
14 42 0.31
15 22 0.16
16 29 0.21
18 14 0.10
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.36
Consensus pattern (15 bp):
AATAATATATAATAA
Found at i:74447536 original size:210 final size:207
Alignment explanation
Indices: 74447071--74447989 Score: 999
Period size: 210 Copynumber: 4.4 Consensus size: 207
74447061 CTGCTTCTTT
* * * * * *
74447071 GATTTATTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTT-ATT--T-G-AGATCATC-T
1 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTA-AACA-CGT
* * * * * ** *
74447130 GAGAGTCAAATCTGCTATGTCCTCAATTTGTTCCTTGTAAATACAAGGATACCAAATCATCTTGG
64 GAAAGTCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGG
* * * * * *
74447195 ATCTTACTTT-GGTCTAAACGTCTGAAGATC-AGATCTGCCATGTATCCGCTCCCCATTAAATGT
129 ATCTT-GTTTCAGTCTAAACGTCTGAAGGTCGAGATCTGCTATGTATCTGCTCTCCATTAAA-GT
*
74447258 GGAGATGCCAGACTTC
192 AGAGATGCCAGACTTC
* *
74447274 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTACTTCATCGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
74447339 AAG-CTAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGA
66 AAGTC-AAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGA
* * * *
74447403 TCTTGTTTCAGTCTAATCGTCTGAAGGTCAGATCGATCTACTATGTATCTGCTCTCTATTGAAGT
130 TCTTGTTTCAGTCTAAACGTCTGAAGGTC-GA--GATCTGCTATGTATCTGCTCTCCATTAAAGT
*
74447468 AGAGATGCCAGACTTT
192 AGAGATGCCAGACTTC
*
74447484 GATTTGTTCTCTGATAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* * * ** * * **
74447549 AAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCTGAA-TACAAAGAGATAAGATC-TGTCAT
66 AAGTCAAATCAGCTATGTCTTCGATTTGCTCCTTG-T-AAGCAC-AAG-GAT--G-CCAAATCAT
* * * * *
74447612 CTTGGATC-TGCTTCAG-CATAAACATCTGAAGGT-GAGATCTGCTATGTGTCTGAAT-TCCATC
124 CTTGGATCTTGTTTCAGTC-TAAACGTCTGAAGGTCGAGATCTGCTATGTATCTG-CTCTCCATT
* *
74447673 AAAGTGGAAATGCCAGACTTC
187 AAAGTAGAGATGCCAGACTTC
* * * *
74447694 GATTTATTCTCTGACAATACAGAGGCGACAAATCATCTTAGATTTGCTTTATCGTAAACATGTGA
1 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* *
74447759 AAGTCAAATCAGCTATGGCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGAT
66 AAGTCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGAT
* * * * *
74447824 ATTGTTTCAGTCTAATCGTCTGAAGGTC-AGATCTGCTATGCATCTGCTCTCTATTGAAGTAGAG
131 CTTGTTTCAGTCTAAACGTCTGAAGGTCGAGATCTGCTATGTATCTGCTCTCCATTAAAGTAGAG
* *
74447888 ATGCCAGAATTT
196 ATGCCAGACTTC
* * *
74447900 GATTTGTTCTCTAACAGTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTGAACACGT-A
1 GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
*
74447964 ATAGTCAAATCAGCTATATCTTCGAT
66 A-AGTCAAATCAGCTATGTCTTCGAT
74447990 CTGTTCCCCG
Statistics
Matches: 599, Mismatches: 88, Indels: 55
0.81 0.12 0.07
Matches are distributed among these distances:
203 41 0.07
204 3 0.01
205 14 0.02
206 140 0.23
207 86 0.14
208 6 0.01
209 4 0.01
210 232 0.39
211 28 0.05
212 7 0.01
213 4 0.01
214 20 0.03
215 13 0.02
216 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (207 bp):
GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
AAGTCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGAT
CTTGTTTCAGTCTAAACGTCTGAAGGTCGAGATCTGCTATGTATCTGCTCTCCATTAAAGTAGAG
ATGCCAGACTTC
Found at i:74448041 original size:416 final size:419
Alignment explanation
Indices: 74447247--74448074 Score: 1362
Period size: 416 Copynumber: 2.0 Consensus size: 419
74447237 TATCCGCTCC
* * *
74447247 CCATTAAATGTGGAGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCT
1 CCATCAAATGTGGAAATGCCAGACTTCGATTTATTCTCTGACAATACAGAGACGACAAATCATCT
* *
74447312 TAGATTTACTTCATCGTAAGCACGTGAAAGCTAAATCAGCTATGTCTTCGATTTGCTCCTTGTAA
66 TAGATTTACTTCATCGTAAACACGTGAAAGCTAAATCAGCTATGGCTTCGATTTGCTCCTTGTAA
* *
74447377 GCACAAGGATGCCAAATCATCTTGGATCTTGTTTCAGTCTAATCGTCTGAAGGTCAGATCGATCT
131 GCACAAGGATGCCAAATCATCTTAGATATTGTTTCAGTCTAATCGTCTGAAGGTCA-A-CGATCT
* * * *
74447442 ACTATGTATCTGCTCTCTATTGAAGTAGAGATGCCAGACTTTGATTTGTTCTCTGATAATACAGA
194 ACTATGCATCTGCTCTCTATTGAAGTAGAGATGCCAGAATTTGATTTGTTCTCTAACAATACAGA
74447507 GACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCG
259 GACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCG
*
74447572 ATCTGCTCCCCGCTGAATACAAAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCATAAACAT
324 ATCTGCTCCCCGCTAAATACAAAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCATAAACAT
74447637 CTGAAGGTGAGATCTGCTATGTGTCTGAATT
389 CTGAAGGTGAGATCTGCTATGTGTCTGAATT
*
74447668 CCATCAAA-GTGGAAATGCCAGACTTCGATTTATTCTCTGACAATACAGAGGCGACAAATCATCT
1 CCATCAAATGTGGAAATGCCAGACTTCGATTTATTCTCTGACAATACAGAGACGACAAATCATCT
* * *
74447732 TAGATTTGCTTTATCGTAAACATGTGAAAG-TCAAATCAGCTATGGCTTCGATTTGCTCCTTGTA
66 TAGATTTACTTCATCGTAAACACGTGAAAGCT-AAATCAGCTATGGCTTCGATTTGCTCCTTGTA
*
74447796 AGCACAAGGATGCCAAATCATCTTAGATATTGTTTCAGTCTAATCGTCTGAAGGTC-A-GATCTG
130 AGCACAAGGATGCCAAATCATCTTAGATATTGTTTCAGTCTAATCGTCTGAAGGTCAACGATCTA
*
74447859 CTATGCATCTGCTCTCTATTGAAGTAGAGATGCCAGAATTTGATTTGTTCTCTAACAGTACAGAG
195 CTATGCATCTGCTCTCTATTGAAGTAGAGATGCCAGAATTTGATTTGTTCTCTAACAATACAGAG
* *
74447924 ACGACAAATCATCTTAGATTTGCTTCATCGTGAACACGT-AATAGTCAAATCAGCTATATCTTCG
260 ACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAA-AGCCAAATCAGCTATATCTTCG
* * *
74447988 ATCTGTTCCCCGCTAAATACAAAGAGATAA-ATCTGTTCATCTTGGATCTGCTTCAGCGTGAACA
324 ATCTGCTCCCCGCTAAATACAAAGAGATAAGATCTG-TCATCTTGGATCTGCTTCAGCATAAACA
74448052 TCTGAAGGTGAGATCTGCTATGT
388 TCTGAAGGTGAGATCTGCTATGT
74448075 TGCGGCTTAT
Statistics
Matches: 381, Mismatches: 23, Indels: 11
0.92 0.06 0.03
Matches are distributed among these distances:
415 7 0.02
416 201 0.53
418 1 0.00
419 1 0.00
420 164 0.43
421 7 0.02
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (419 bp):
CCATCAAATGTGGAAATGCCAGACTTCGATTTATTCTCTGACAATACAGAGACGACAAATCATCT
TAGATTTACTTCATCGTAAACACGTGAAAGCTAAATCAGCTATGGCTTCGATTTGCTCCTTGTAA
GCACAAGGATGCCAAATCATCTTAGATATTGTTTCAGTCTAATCGTCTGAAGGTCAACGATCTAC
TATGCATCTGCTCTCTATTGAAGTAGAGATGCCAGAATTTGATTTGTTCTCTAACAATACAGAGA
CGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGAT
CTGCTCCCCGCTAAATACAAAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCATAAACATCT
GAAGGTGAGATCTGCTATGTGTCTGAATT
Found at i:74458968 original size:27 final size:28
Alignment explanation
Indices: 74458916--74458973 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
74458906 CATATAAACA
* * *
74458916 AATAATAAAATGTGAATTTAATAAT-AT
1 AATAAAAAAATATGAATTTAAGAATAAT
74458943 AATAAAAAAATAT-AATTATAAGAATAAT
1 AATAAAAAAATATGAATT-TAAGAATAAT
74458971 AAT
1 AAT
74458974 TACATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 4 0.15
27 17 0.65
28 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (28 bp):
AATAAAAAAATATGAATTTAAGAATAAT
Found at i:74459282 original size:19 final size:18
Alignment explanation
Indices: 74459250--74459285 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
74459240 TAATGTATAG
*
74459250 ATAAAAATGTATAATAAT
1 ATAAAAATGCATAATAAT
74459268 ATAAAAATGACATAATAA
1 ATAAAAATG-CATAATAA
74459286 CATATAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (18 bp):
ATAAAAATGCATAATAAT
Found at i:74459329 original size:14 final size:14
Alignment explanation
Indices: 74459305--74459341 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
74459295 TAATTATAAT
74459305 GTATA-ATATAAAA
1 GTATATATATAAAA
74459318 GTATATATATAAAA
1 GTATATATATAAAA
74459332 -TA-ATATATAA
1 GTATATATATAA
74459342 TATATAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 8 0.35
13 7 0.30
14 8 0.35
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (14 bp):
GTATATATATAAAA
Found at i:74459334 original size:19 final size:19
Alignment explanation
Indices: 74459306--74459465 Score: 106
Period size: 19 Copynumber: 8.3 Consensus size: 19
74459296 AATTATAATG
74459306 TATAAT-ATAAAAGTATATA
1 TATAATAATAAAA-TATATA
*
74459325 TATAA-AATAATATATAATA
1 TATAATAATAAAATAT-ATA
74459344 TATAATTAATAAACATATA-A
1 TATAA-TAATAAA-ATATATA
74459364 TATAATAAT--AATATATA
1 TATAATAATAAAATATATA
*
74459381 AATAATAATGTAAAATA-ATA
1 TATAATAA--TAAAATATATA
*
74459401 -ATAATTTATGAAAA-ATAATA
1 TATAA-TAAT-AAAATAT-ATA
74459421 TATAATAAATAATAATATATA
1 TATAAT-AATAA-AATATATA
74459442 -ATATATAATAAAATA-ATTA
1 TATA-ATAATAAAATATA-TA
74459461 TATAA
1 TATAA
74459466 CATAAAAATA
Statistics
Matches: 115, Mismatches: 5, Indels: 42
0.71 0.03 0.26
Matches are distributed among these distances:
16 5 0.04
17 9 0.08
18 6 0.05
19 38 0.33
20 28 0.24
21 23 0.20
22 6 0.05
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (19 bp):
TATAATAATAAAATATATA
Found at i:74459348 original size:14 final size:14
Alignment explanation
Indices: 74459292--74459465 Score: 93
Period size: 14 Copynumber: 12.4 Consensus size: 14
74459282 ATAACATATA
74459292 ATATAAT-TATAAT
1 ATATAATATATAAT
*
74459305 GTATAATATA-AA-
1 ATATAATATATAAT
74459317 AGTAT-ATATATAA-
1 A-TATAATATATAAT
74459330 A-ATAATATATAAT
1 ATATAATATATAAT
74459343 ATATAAT-TAATAA-
1 ATATAATAT-ATAAT
*
74459356 ACAT-ATAATATAAT
1 ATATAAT-ATATAAT
74459370 A-ATAATATATAA-
1 ATATAATATATAAT
* *
74459382 ATAATAATGTAAAAT
1 AT-ATAATATATAAT
*
74459397 AATAATAATTTATGAA-
1 -AT-ATAATATAT-AAT
*
74459413 AAATAATATATAAT
1 ATATAATATATAAT
74459427 AAATAATAATATATAAT
1 --AT-ATAATATATAAT
*
74459444 ATATAATAAAATAATT
1 ATATAAT-ATATAA-T
74459460 ATATAA
1 ATATAA
74459466 CATAAAAATA
Statistics
Matches: 128, Mismatches: 11, Indels: 41
0.71 0.06 0.23
Matches are distributed among these distances:
11 2 0.02
12 16 0.12
13 33 0.26
14 37 0.29
15 8 0.06
16 18 0.14
17 14 0.11
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (14 bp):
ATATAATATATAAT
Found at i:74459356 original size:84 final size:83
Alignment explanation
Indices: 74459277--74459437 Score: 186
Period size: 84 Copynumber: 1.9 Consensus size: 83
74459267 TATAAAAATG
*
74459277 ACATAATAAC-ATATAATATAATTATAATGTATAATATAA-AAGT-ATATATATAAAATAATATA
1 ACATAATAACAATAT-ATA-AATAATAATGTA-AA-ATAATAA-TAATATATA-AAAATAATATA
74459339 TAATATATAATTAATAAACATATA
60 TAATATATAATTAATAAACATATA
* * *
74459363 ATATAATAATAATATATAAATAATAATGTAAAATAATAATAATTTATGAAAAATAATATATAATA
1 ACATAATAACAATATATAAATAATAATGTAAAATAATAATAATATAT-AAAAATAATATATAATA
*
74459428 AATAA-TAATA
65 TATAATTAATA
74459438 TATAATATAT
Statistics
Matches: 66, Mismatches: 5, Indels: 11
0.80 0.06 0.13
Matches are distributed among these distances:
83 10 0.15
84 29 0.44
85 12 0.18
86 11 0.17
87 4 0.06
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (83 bp):
ACATAATAACAATATATAAATAATAATGTAAAATAATAATAATATATAAAAATAATATATAATAT
ATAATTAATAAACATATA
Found at i:74459388 original size:7 final size:7
Alignment explanation
Indices: 74459329--74459458 Score: 56
Period size: 7 Copynumber: 18.0 Consensus size: 7
74459319 TATATATATA
74459329 AAATAAT
1 AAATAAT
*
74459336 ATATAAT
1 AAATAAT
*
74459343 ATATAAT
1 AAATAAT
*
74459350 TAATAA-
1 AAATAAT
74459356 ACATATAAT
1 A-A-ATAAT
74459365 ATAATAAT
1 A-AATAAT
74459373 -AATATAT
1 AAATA-AT
74459380 AAATAAT
1 AAATAAT
*
74459387 -AAT-GT
1 AAATAAT
74459392 AAAATAAT
1 -AAATAAT
74459400 -AATAAT
1 AAATAAT
**
74459406 TTATGAA-
1 AAAT-AAT
74459413 AAATAAT
1 AAATAAT
*
74459420 ATATAAT
1 AAATAAT
74459427 AAATAAT
1 AAATAAT
74459434 AATATATAAT
1 -A-A-ATAAT
*
74459444 ATATAAT
1 AAATAAT
74459451 AAAATAAT
1 -AAATAAT
74459459 TATATAACAT
Statistics
Matches: 94, Mismatches: 14, Indels: 29
0.69 0.10 0.21
Matches are distributed among these distances:
5 1 0.01
6 15 0.16
7 46 0.49
8 23 0.24
9 4 0.04
10 5 0.05
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (7 bp):
AAATAAT
Found at i:74459465 original size:40 final size:38
Alignment explanation
Indices: 74459332--74459464 Score: 76
Period size: 44 Copynumber: 3.2 Consensus size: 38
74459322 ATATATAAAA
74459332 TAATATATAATATATAATTAATAA-ACATATA-ATATAATAA
1 TAATATATAATATATAA-TAA-AATA-ATATATATA-AATAA
74459372 TAATATATAA-ATAATAATGTAAAATAATAATAATTTATGAAA-AA
1 TAATATATAATAT-ATAA--TAAAATAAT-AT-A--TAT-AAATAA
*
74459416 TAATATATAATAAATAATAATATATAATATATAATAAAATAA
1 TAATATATAATATATAATAA-A-ATAATATAT-AT-AAATAA
*
74459458 TTATATA
1 TAATATA
74459465 ACATAAAAAT
Statistics
Matches: 75, Mismatches: 4, Indels: 26
0.71 0.04 0.25
Matches are distributed among these distances:
39 2 0.03
40 19 0.25
41 11 0.15
42 13 0.17
43 3 0.04
44 21 0.28
45 5 0.07
46 1 0.01
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.37
Consensus pattern (38 bp):
TAATATATAATATATAATAAAATAATATATATAAATAA
Found at i:74459500 original size:72 final size:73
Alignment explanation
Indices: 74459277--74459500 Score: 173
Period size: 72 Copynumber: 3.1 Consensus size: 73
74459267 TATAAAAATG
* * *
74459277 ACATAAT-AACATATAATATAATTATAATGTATAATATAA-AAGTAT-ATATATAAAATAA--TA
1 ACATAATAAACATATAATATAATAATAATATATAA-ATAATAA-TATAAAATA-AAAATAATTTA
* * *
74459337 TATAATATATA
63 TAAAAAATAAA
* * * *
74459348 A-TTAATAAACATATAATATAATAATAATATATAAATAATAATGTAAAATAATAATAATTTATGA
1 ACATAATAAACATATAATATAATAATAATATATAAATAATAATATAAAATAAAAATAATTTATAA
*
74459412 AAAATAAT
66 AAAATAAA
* * * *
74459420 ATATAATAAATA-ATAATAT-ATAAT-ATATAATAAAATAATTATATAACATAAAAATAAGGTTT
1 ACATAATAAACATATAATATAATAATAATAT-AT-AAATAATAATATAAAATAAAAATAA--TTT
74459482 A-AAAAAATAAA
62 ATAAAAAATAAA
74459493 ACA-AATAA
1 ACATAATAA
74459501 CAATGTAAAA
Statistics
Matches: 123, Mismatches: 20, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
70 20 0.16
71 39 0.32
72 42 0.34
73 18 0.15
74 4 0.03
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (73 bp):
ACATAATAAACATATAATATAATAATAATATATAAATAATAATATAAAATAAAAATAATTTATAA
AAAATAAA
Found at i:74459991 original size:9 final size:9
Alignment explanation
Indices: 74459977--74460039 Score: 108
Period size: 9 Copynumber: 7.0 Consensus size: 9
74459967 TGACCACCGT
74459977 TCACGCGCC
1 TCACGCGCC
74459986 TCACGCGCC
1 TCACGCGCC
*
74459995 TCACGCTCC
1 TCACGCGCC
74460004 TCACGCGCC
1 TCACGCGCC
74460013 TCACGCGCC
1 TCACGCGCC
*
74460022 TCACGTGCC
1 TCACGCGCC
74460031 TCACGCGCC
1 TCACGCGCC
74460040 ATTGTACACG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.11, C:0.54, G:0.21, T:0.14
Consensus pattern (9 bp):
TCACGCGCC
Found at i:74461316 original size:20 final size:20
Alignment explanation
Indices: 74461291--74461328 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74461281 ATATTTACTC
* *
74461291 TTTAAAAGTAAATATAAAAT
1 TTTAAAAATAAAAATAAAAT
74461311 TTTAAAAATAAAAATAAA
1 TTTAAAAATAAAAATAAA
74461329 TAAAAGTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (20 bp):
TTTAAAAATAAAAATAAAAT
Found at i:74461944 original size:3 final size:3
Alignment explanation
Indices: 74461938--74461965 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
74461928 GTTGGAGATA
74461938 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
74461966 GCTACTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:74462137 original size:16 final size:16
Alignment explanation
Indices: 74462068--74462135 Score: 100
Period size: 16 Copynumber: 4.2 Consensus size: 16
74462058 TTTGGTTCAC
74462068 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
74462084 TCTATTGGATTGGAGG
1 TGTATTGGATTAGAGG
74462100 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
74462116 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
74462132 TGTA
1 TGTA
74462136 ATAGCAAATC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.26, C:0.01, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:74462221 original size:39 final size:43
Alignment explanation
Indices: 74462116--74462225 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 43
74462106 GGATTAGAGG
74462116 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * *
74462161 TGTAATGGAATAGAGGCGTAATAG-TAATCTTA-TGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATC-AACTGTTTGGTTA
74462201 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
74462226 TAATGGAAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
39 20 0.34
40 2 0.03
43 1 0.02
44 11 0.19
45 24 0.41
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Done.