Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 228 of 343
Found at i:75068339 original size:15 final size:14
Alignment explanation
Indices: 75068279--75068339 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 14
75068269 ATATAAATAG
*
75068279 AAATAAAAATATAAT
1 AAATAGAAA-ATAAT
75068294 AAATAGAAATATAAT
1 AAATAGAAA-ATAAT
75068309 -AATAGTAGAAAT-AT
1 AAATAG-A-AAATAAT
75068323 AAATAGATAAATAAT
1 AAATAGA-AAATAAT
75068338 AA
1 AA
75068340 TAGCATTAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
14 12 0.30
15 26 0.65
16 2 0.05
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (14 bp):
AAATAGAAAATAAT
Found at i:75068931 original size:12 final size:11
Alignment explanation
Indices: 75068901--75068934 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
75068891 CTAATTTAAT
75068901 AATAAAAT-AA
1 AATAAAATCAA
75068911 AATAAAATCAA
1 AATAAAATCAA
75068922 AATCAAAATCAA
1 AAT-AAAATCAA
75068934 A
1 A
75068935 TCTTTCTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 5 0.23
12 9 0.41
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.18
Consensus pattern (11 bp):
AATAAAATCAA
Found at i:75073838 original size:30 final size:29
Alignment explanation
Indices: 75073802--75073862 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
75073792 GAACGGAAGT
75073802 TTTAGCACTAAGTGTGCGATTTAAACTAGC
1 TTTAGCACTAAGTGTGCGATTT-AACTAGC
75073832 TTTAGCACTAAGTGTGCGATTTAACTAGC
1 TTTAGCACTAAGTGTGCGATTTAACTAGC
75073861 TT
1 TT
75073863 CGGCTACTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (29 bp):
TTTAGCACTAAGTGTGCGATTTAACTAGC
Found at i:75074631 original size:19 final size:19
Alignment explanation
Indices: 75074607--75074646 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
75074597 TTGTAGGTTA
75074607 ATCTATAATGGATGGTAAG
1 ATCTATAATGGATGGTAAG
*
75074626 ATCTATAATGGGTGGTAAG
1 ATCTATAATGGATGGTAAG
75074645 AT
1 AT
75074647 GGCTTAAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.33
Consensus pattern (19 bp):
ATCTATAATGGATGGTAAG
Found at i:75092691 original size:17 final size:17
Alignment explanation
Indices: 75092669--75092706 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
75092659 TGTTAATTAC
*
75092669 ATTATTAAATTGAAATT
1 ATTATTAAATTGAAAGT
*
75092686 ATTATTAAATTTAAAGT
1 ATTATTAAATTGAAAGT
75092703 ATTA
1 ATTA
75092707 AAAAAAATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (17 bp):
ATTATTAAATTGAAAGT
Found at i:75096230 original size:22 final size:22
Alignment explanation
Indices: 75096205--75096252 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
75096195 TTTTTTGTTG
*
75096205 TTTT-CTACCTATTTTGCTACCA
1 TTTTACTA-CTATGTTGCTACCA
* *
75096227 TTTTACTATTATGTTGCTACTA
1 TTTTACTACTATGTTGCTACCA
75096249 TTTT
1 TTTT
75096253 GTTGTTATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.56
Consensus pattern (22 bp):
TTTTACTACTATGTTGCTACCA
Found at i:75096324 original size:30 final size:30
Alignment explanation
Indices: 75096290--75096352 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
75096280 ACTTATTTTA
*
75096290 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTAGTTTAAAGACAT
*
75096320 TTGTTAATTTTGTTATTAGTTTAGAGACAT
1 TTGTTAATTTTGTTATTAGTTTAAAGACAT
75096350 TTG
1 TTG
75096353 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.03, G:0.14, T:0.56
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTAGTTTAAAGACAT
Found at i:75096456 original size:18 final size:18
Alignment explanation
Indices: 75096435--75096474 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
75096425 GAAATATTTA
*
75096435 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
75096453 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
75096471 TTTT
1 TTTT
75096475 TAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:75096506 original size:12 final size:12
Alignment explanation
Indices: 75096476--75096508 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
75096466 TATATTTTTT
75096476 AAAATT-ATATA
1 AAAATTAATATA
75096487 AAAA-TAATATA
1 AAAATTAATATA
75096498 AAAATTAATAT
1 AAAATTAATAT
75096509 TGGTGGGCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:75103163 original size:15 final size:15
Alignment explanation
Indices: 75103126--75103167 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
75103116 TTAGACTTTT
75103126 TTAAAATTTATAAAAA
1 TTAAAA-TTATAAAAA
*
75103142 TTTAAATTAGTAAAAA
1 TTAAAATTA-TAAAAA
75103158 -TAAAATTATA
1 TTAAAATTATA
75103168 CTTTAGCCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 2 0.09
15 10 0.43
16 11 0.48
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (15 bp):
TTAAAATTATAAAAA
Found at i:75109452 original size:14 final size:14
Alignment explanation
Indices: 75109433--75109459 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75109423 AGATTTAAAA
75109433 ATTAAAAATAAATT
1 ATTAAAAATAAATT
75109447 ATTAAAAATAAAT
1 ATTAAAAATAAAT
75109460 ATAACACATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATTAAAAATAAATT
Found at i:75112767 original size:46 final size:46
Alignment explanation
Indices: 75112714--75112932 Score: 246
Period size: 46 Copynumber: 4.7 Consensus size: 46
75112704 ATTGTTGGTT
*
75112714 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGAGAGCC
* *
75112760 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGAGAGCC
* * *
75112808 AGTGTAAGACATGTCTGAGACATGCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-AGAGCC
* * * * *
75112854 AGTTTAAGACATGTCTGGGACATACATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCC
*
75112900 AGTGTAAGACCATGTCTCGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
75112933 ATCGGCATCT
Statistics
Matches: 146, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
45 1 0.01
46 69 0.47
47 44 0.30
48 31 0.21
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCC
Found at i:75112929 original size:94 final size:93
Alignment explanation
Indices: 75112713--75112932 Score: 254
Period size: 94 Copynumber: 2.3 Consensus size: 93
75112703 TATTGTTGGT
* *
75112713 TAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTG
1 TAGTGTAAGACATGTCT-GGACATGCATCGGCCACATGACGAGAGCCAGTGTAAGACCATGTCTG
* *
75112778 GGACATGGCATCGGCATTGAGATGAGAGC
65 GGACATGACATCGGCATCGAGATGAGAGC
* *
75112807 TAGTGTAAGACATGTCTGAGACATGCATCGGCCTCGA-GACGTA-AGCCAGTTTAAGA-CATGTC
1 TAGTGTAAGACATGTCTG-GACATGCATCGGCCAC-ATGACG-AGAGCCAGTGTAAGACCATGTC
*
75112869 TGGGACAT-ACATCGGC-TACGAGATGATAG-
63 TGGGACATGACATCGGCAT-CGAGATGAGAGC
75112898 TCAGTGTAAGACCATGTCTCGGACATGGCATCGGC
1 T-AGTGTAAGA-CATGTCT-GGACAT-GCATCGGC
75112933 ATCGGCATCT
Statistics
Matches: 111, Mismatches: 7, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
91 2 0.02
92 25 0.23
93 27 0.24
94 55 0.50
95 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
TAGTGTAAGACATGTCTGGACATGCATCGGCCACATGACGAGAGCCAGTGTAAGACCATGTCTGG
GACATGACATCGGCATCGAGATGAGAGC
Found at i:75122832 original size:7 final size:7
Alignment explanation
Indices: 75122820--75122868 Score: 64
Period size: 7 Copynumber: 7.0 Consensus size: 7
75122810 ACCAAATGGT
75122820 CCCTAAA
1 CCCTAAA
75122827 CCCTAAA
1 CCCTAAA
*
75122834 CTCTTAAA
1 C-CCTAAA
75122842 -CCTAAA
1 CCCTAAA
*
75122848 CTCTAAA
1 CCCTAAA
75122855 CCCTAAA
1 CCCTAAA
75122862 CCCTAAA
1 CCCTAAA
75122869 AAAGAGTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
6 5 0.14
7 26 0.72
8 5 0.14
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (7 bp):
CCCTAAA
Found at i:75125550 original size:21 final size:21
Alignment explanation
Indices: 75125536--75125586 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
75125526 AAATTTCATA
75125536 ATTTTAACATGAAATTTTACT
1 ATTTTAACATGAAATTTTACT
75125557 ATTTTAACATGAAATTTTACT
1 ATTTTAACATGAAATTTTACT
75125578 ATTTTAACA
1 ATTTTAACA
75125587 AATAAATCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (21 bp):
ATTTTAACATGAAATTTTACT
Found at i:75129597 original size:23 final size:23
Alignment explanation
Indices: 75129571--75129622 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
75129561 AAAACCTTAA
*
75129571 TTCTCTCTTTTTCTTTTCTTT-CT
1 TTCTCTCTTTTTC-CTTCTTTCCT
*
75129594 TTCTTTCTTTTTCCTTCTTTCCT
1 TTCTCTCTTTTTCCTTCTTTCCT
75129617 TTCTCT
1 TTCTCT
75129623 GTTTCGTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (23 bp):
TTCTCTCTTTTTCCTTCTTTCCT
Found at i:75129852 original size:20 final size:22
Alignment explanation
Indices: 75129817--75129856 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
75129807 TTTATTTTAC
75129817 ATAATATAATATAATATATTTT
1 ATAATATAATATAATATATTTT
75129839 ATAAT-TAA-ATAATATATT
1 ATAATATAATATAATATATT
75129857 AATATATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 3 0.17
22 5 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAATATAATATAATATATTTT
Found at i:75129875 original size:28 final size:30
Alignment explanation
Indices: 75129817--75129875 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 30
75129807 TTTATTTTAC
* *
75129817 ATAATATAATATAATATATTTTATAATTAA
1 ATAATATAATATAATATATTTTAAAAATAA
75129847 ATAATAT-AT-TAATATA-TTTAAAACATAA
1 ATAATATAATATAATATATTTTAAAA-ATAA
75129875 A
1 A
75129876 AATCTAAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
27 6 0.23
28 11 0.42
29 2 0.08
30 7 0.27
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (30 bp):
ATAATATAATATAATATATTTTAAAAATAA
Found at i:75135993 original size:27 final size:26
Alignment explanation
Indices: 75135945--75136076 Score: 158
Period size: 27 Copynumber: 4.9 Consensus size: 26
75135935 GCGAGGCTGC
* *
75135945 CAGATATTGTGAC-GAAGTCACCAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
75135971 ACAGATATTGTGGCAGAGCCACCAGAT
1 -CAGATATTGTGGCAGAGCCACCAGAT
* * *
75135998 CAGATAATCGTGGCATAGCCACCAGAA
1 CAGAT-ATTGTGGCAGAGCCACCAGAT
75136025 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
*
75136052 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
75136077 GATGCTTCCT
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
26 7 0.08
27 82 0.89
28 3 0.03
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:75136039 original size:54 final size:54
Alignment explanation
Indices: 75135963--75136076 Score: 203
Period size: 54 Copynumber: 2.1 Consensus size: 54
75135953 GTGACGAAGT
75135963 CACCAGATACAGATATTGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
1 CACCAGATACAGATATTGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
*
75136017 CACCAGA-ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGC
1 CACCAGATACAGATAT-TGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
75136071 CACCAG
1 CACCAG
75136077 GATGCTTCCT
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
53 8 0.14
54 50 0.86
ACGTcount: A:0.34, C:0.25, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATACAGATATTGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
Found at i:75137696 original size:26 final size:26
Alignment explanation
Indices: 75137665--75137772 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
75137655 TGAAATGCCC
*
75137665 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
75137691 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75137717 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
75137743 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75137769 ATCA
1 ATCA
75137773 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:75143054 original size:27 final size:27
Alignment explanation
Indices: 75143004--75143161 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
75142994 GCGAGGCTGC
* *
75143004 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
75143031 CAGATATTGTGGCAGAGCCTCCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
75143057 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
75143084 CAGATAATCGTGGCATAGCCACCAG--A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
75143110 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
75143137 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
75143162 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
25 2 0.02
26 28 0.25
27 78 0.69
28 5 0.04
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:75143088 original size:53 final size:53
Alignment explanation
Indices: 75143022--75143161 Score: 228
Period size: 53 Copynumber: 2.6 Consensus size: 53
75143012 GTGACGAAGT
* *
75143022 CACCAGATACAGAT-ATTGTGGCAGAGCCTCCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAG-ACAGATATATGTGGCAGAGC
*
75143076 CACCAGATCAGATAATCGTGGCATAGCCACCAGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGACAGATATATGTGGCAGAGC
75143129 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
75143162 GACGCTTCCT
Statistics
Matches: 81, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
53 57 0.70
54 24 0.30
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.18
Consensus pattern (53 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGACAGATATATGTGGCAGAGC
Found at i:75144808 original size:26 final size:26
Alignment explanation
Indices: 75144752--75144857 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
75144742 TGAAATGCCC
*
75144752 ATCATGGAACATTTACCTAA--AATT
1 ATCATGGAACATTTACCTAACCCATT
*
75144776 ATCATGGAAAATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75144802 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
75144828 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75144854 ATCA
1 ATCA
75144858 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
24 19 0.26
26 55 0.74
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:75150265 original size:27 final size:26
Alignment explanation
Indices: 75150107--75150265 Score: 158
Period size: 27 Copynumber: 5.9 Consensus size: 26
75150097 GCGAGGCTGC
* * *
75150107 CAGATATTGTGAC-GAAGTCACTAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
* *
75150133 ACAGATATTGTGGCAGAGCCACCAAAA
1 -CAGATATTGTGGCAGAGCCACCAGAT
*
75150160 CAGATATATGTGGCAGAGCCACCAAAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
* *
75150187 CAGATAATTGTGGCATAGCCACCAGAA
1 CAGAT-ATTGTGGCAGAGCCACCAGAT
* *
75150214 CAAATATATGTGGTAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
*
75150241 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
75150266 GACGCTTCCT
Statistics
Matches: 111, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
26 9 0.08
27 97 0.87
28 5 0.05
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:75150265 original size:54 final size:54
Alignment explanation
Indices: 75150129--75150265 Score: 213
Period size: 54 Copynumber: 2.5 Consensus size: 54
75150119 CGAAGTCACT
* * *
75150129 AGATACAGAT-ATTGTGGCAGAGCCACCAAAACAGATATATGTGGCAGAGCCACC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGCCACC
* *
75150183 AAATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGTAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGCCACC
75150237 AGATCAGATAATTGTGGCATAGCCACCAG
1 AGATCAGATAATTGTGGCATAGCCACCAG
75150266 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
53 5 0.07
54 71 0.93
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGCCACC
Found at i:75151909 original size:26 final size:26
Alignment explanation
Indices: 75151878--75151985 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
75151868 TGAAATGCCC
*
75151878 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
75151904 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75151930 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
75151956 ATCACGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75151982 ATCA
1 ATCA
75151986 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:75165224 original size:17 final size:18
Alignment explanation
Indices: 75165186--75165225 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
75165176 TTTAAGGTTT
75165186 AAGAAAAGGAAAAAAAAA
1 AAGAAAAGGAAAAAAAAA
* *
75165204 AAGAAAA-GAAGAAAAAG
1 AAGAAAAGGAAAAAAAAA
75165221 AAGAA
1 AAGAA
75165226 GAATAGGAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (18 bp):
AAGAAAAGGAAAAAAAAA
Found at i:75165945 original size:3 final size:3
Alignment explanation
Indices: 75165937--75165997 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
75165927 ATGTTACATT
75165937 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
75165985 TTC TTC TTC TTC T
1 TTC TTC TTC TTC T
75165998 CTATTATTAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:75167806 original size:10 final size:10
Alignment explanation
Indices: 75167791--75167841 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
75167781 AAATTTTAGG
75167791 ATTTATTTTT
1 ATTTATTTTT
*
75167801 ATTTATCTTT
1 ATTTATTTTT
*
75167811 ATTTATCTTT
1 ATTTATTTTT
* *
75167821 AATTATTTGT
1 ATTTATTTTT
75167831 ATTTATCTTTT
1 ATTTAT-TTTT
75167842 GGAATTTAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
10 31 0.91
11 3 0.09
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.71
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:75167816 original size:20 final size:20
Alignment explanation
Indices: 75167791--75167840 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
75167781 AAATTTTAGG
* * *
75167791 ATTTATTTTTATTTATCTTT
1 ATTTATCTTTAATTATCTGT
*
75167811 ATTTATCTTTAATTATTTGT
1 ATTTATCTTTAATTATCTGT
75167831 ATTTATCTTT
1 ATTTATCTTT
75167841 TGGAATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.70
Consensus pattern (20 bp):
ATTTATCTTTAATTATCTGT
Found at i:75168646 original size:38 final size:39
Alignment explanation
Indices: 75168568--75168649 Score: 116
Period size: 39 Copynumber: 2.2 Consensus size: 39
75168558 ATTTTTGAAA
*
75168568 TTCCA-ATCAAAACTTTTAATTCTGTTTTTATTTTATTT
1 TTCCAGATCAAAACTTTTAATTCTGTTTTTATTTTACTT
*
75168606 TTCCAGATCAAAACTTTTAATTTTGTTCTTT-TTTT-CTT
1 TTCCAGATCAAAACTTTTAATTCTGTT-TTTATTTTACTT
75168644 TTCCAG
1 TTCCAG
75168650 GTACGCAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
38 13 0.32
39 24 0.60
40 3 0.08
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.56
Consensus pattern (39 bp):
TTCCAGATCAAAACTTTTAATTCTGTTTTTATTTTACTT
Found at i:75177831 original size:28 final size:28
Alignment explanation
Indices: 75177798--75177851 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
75177788 TATTTTAAAC
75177798 TTATTCAACTAA-AGCATATTTACACAAT
1 TTATTCAACTAATA-CATATTTACACAAT
*
75177826 TTATTCAACTAATATATATTTACACA
1 TTATTCAACTAATACATATTTACACA
75177852 CATACAAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 23 0.96
29 1 0.04
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.39
Consensus pattern (28 bp):
TTATTCAACTAATACATATTTACACAAT
Found at i:75178080 original size:20 final size:22
Alignment explanation
Indices: 75178041--75178080 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
75178031 GCAATATTAA
75178041 ACAGAGAGCACTAAAGTGTGAT
1 ACAGAGAGCACTAAAGTGTGAT
75178063 ACAGAGAGCAC-AAA-TGTG
1 ACAGAGAGCACTAAAGTGTG
75178081 CTAGGGCCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 3 0.17
22 11 0.61
ACGTcount: A:0.42, C:0.15, G:0.28, T:0.15
Consensus pattern (22 bp):
ACAGAGAGCACTAAAGTGTGAT
Found at i:75180622 original size:7 final size:7
Alignment explanation
Indices: 75180610--75180635 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
75180600 TAATTCTAGA
75180610 AAAAATT
1 AAAAATT
75180617 AAAAATT
1 AAAAATT
75180624 AAAAATT
1 AAAAATT
75180631 AAAAA
1 AAAAA
75180636 AAATTCAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (7 bp):
AAAAATT
Found at i:75181645 original size:18 final size:18
Alignment explanation
Indices: 75181607--75181647 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
75181597 TTAACAATAC
* *
75181607 TTTTATCTCAAAAGTATT
1 TTTTATCGCAAAAGTACT
*
75181625 TTTTATCGCAAAAGTGCT
1 TTTTATCGCAAAAGTACT
75181643 TTTTA
1 TTTTA
75181648 AAAACAATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.49
Consensus pattern (18 bp):
TTTTATCGCAAAAGTACT
Found at i:75183426 original size:24 final size:25
Alignment explanation
Indices: 75183398--75183446 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
75183388 CTTTTTTTAT
*
75183398 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
75183422 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
75183447 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:75183439 original size:25 final size:23
Alignment explanation
Indices: 75183410--75183474 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
75183400 AATAAAAAAC
*
75183410 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
75183435 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
75183456 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAACAAATA
75183475 AAAATGGGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 9 0.24
20 8 0.22
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:75183473 original size:19 final size:20
Alignment explanation
Indices: 75183436--75183474 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
75183426 TCAAATACAT
75183436 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
75183456 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
75183475 AAAATGGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:75183711 original size:17 final size:17
Alignment explanation
Indices: 75183666--75183713 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
75183656 TACTAAAGTT
*
75183666 ATTTAAAATTAAAAATA
1 ATTTAATATTAAAAATA
*** *
75183683 AAAAAATTTTAAAAATA
1 ATTTAATATTAAAAATA
75183700 ATTTAATATTAAAA
1 ATTTAATATTAAAA
75183714 TCGGGCCGGG
Statistics
Matches: 22, Mismatches: 9, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
ATTTAATATTAAAAATA
Found at i:75184117 original size:43 final size:44
Alignment explanation
Indices: 75184064--75184186 Score: 153
Period size: 45 Copynumber: 2.8 Consensus size: 44
75184054 CAAAAGATGT
* * *
75184064 CATATTATCTTTCAACTATTG-TTTTTCATTTTCG-ATTTAATGC
1 CATAGTATCTTTCAACTATGGATTTTTC-TTTTCGAATATAATGC
*
75184107 TATAGTATCTTTCAACTATGGACTTTTTCTTTTCGAATATAATGC
1 CATAGTATCTTTCAACTATGGA-TTTTTCTTTTCGAATATAATGC
75184152 CATAGTATCTTTCAACTAT-GATCTTTTACTTTTCG
1 CATAGTATCTTTCAACTATGGAT-TTTT-CTTTTCG
75184187 TTTATATCAT
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
43 19 0.27
44 12 0.17
45 39 0.56
ACGTcount: A:0.24, C:0.17, G:0.09, T:0.50
Consensus pattern (44 bp):
CATAGTATCTTTCAACTATGGATTTTTCTTTTCGAATATAATGC
Found at i:75187677 original size:25 final size:25
Alignment explanation
Indices: 75187648--75187695 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
75187638 TTAAAAAATT
75187648 AAAT-ATCTCAAACAGATTAAATTTA
1 AAATAATCTCAAACAGA-TAAATTTA
75187673 AAATAATCTCAAACAGATAAATT
1 AAATAATCTCAAACAGATAAATT
75187696 AATAGTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.54, C:0.12, G:0.04, T:0.29
Consensus pattern (25 bp):
AAATAATCTCAAACAGATAAATTTA
Found at i:75187697 original size:24 final size:24
Alignment explanation
Indices: 75187643--75187697 Score: 78
Period size: 26 Copynumber: 2.3 Consensus size: 24
75187633 TTTTTTTAAA
75187643 AAATT-AAATATCTCAAACAGATT
1 AAATTAAAATATCTCAAACAGATT
75187666 AAATTTAAAATAATCTCAAACAGA-T
1 AAA-TTAAAAT-ATCTCAAACAGATT
75187691 AAATTAA
1 AAATTAA
75187698 TAGTAAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
23 3 0.10
24 6 0.21
25 8 0.28
26 12 0.41
ACGTcount: A:0.56, C:0.11, G:0.04, T:0.29
Consensus pattern (24 bp):
AAATTAAAATATCTCAAACAGATT
Found at i:75200445 original size:23 final size:22
Alignment explanation
Indices: 75200393--75200445 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
75200383 TCCACGTCTT
*
75200393 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
75200415 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
75200438 TTTCTTTT
1 TTTCTTTT
75200446 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:75212058 original size:11 final size:11
Alignment explanation
Indices: 75212040--75212108 Score: 51
Period size: 10 Copynumber: 6.6 Consensus size: 11
75212030 AATTAAATTT
75212040 TTTTAAAAAT-
1 TTTTAAAAATA
*
75212050 TCTTAAAAATA
1 TTTTAAAAATA
75212061 TTTT-AAAATA
1 TTTTAAAAATA
*
75212071 ---TAGAAAT-
1 TTTTAAAAATA
75212078 TTATTAAAAATA
1 TT-TTAAAAATA
*
75212090 TTATAAAAATTA
1 TTTTAAAAA-TA
75212102 TTTTAAA
1 TTTTAAA
75212109 GTGCAGAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
7 1 0.02
8 4 0.09
10 15 0.33
11 15 0.33
12 10 0.22
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (11 bp):
TTTTAAAAATA
Found at i:75212097 original size:40 final size:39
Alignment explanation
Indices: 75212053--75212141 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 39
75212043 TAAAAATTCT
*
75212053 TAAAAATATTTTAAAATATAGAAATTTATTAAAAATAT-TA
1 TAAAAATATTTTAAAATACAGAAA-TTA-TAAAAATATATA
* * *
75212093 TAAAAATTATTTTAAAGTGCAGAAATTATAAATATATATA
1 TAAAAA-TATTTTAAAATACAGAAATTATAAAAATATATA
75212133 TAAAAATAT
1 TAAAAATAT
75212142 AAAAATATCA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
39 11 0.26
40 17 0.40
41 15 0.35
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.38
Consensus pattern (39 bp):
TAAAAATATTTTAAAATACAGAAATTATAAAAATATATA
Found at i:75212189 original size:8 final size:9
Alignment explanation
Indices: 75212167--75212192 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
75212157 AATTAAATCA
75212167 ATTTTTAAT
1 ATTTTTAAT
75212176 ATTTTTAAT
1 ATTTTTAAT
75212185 ATTTTTAA
1 ATTTTTAA
75212193 ATATCTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:75212245 original size:13 final size:12
Alignment explanation
Indices: 75212230--75212292 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 12
75212220 TGATTTTTAT
75212230 TTTTTAATAATA
1 TTTTTAATAATA
75212242 TTTTTAAT-AT-
1 TTTTTAATAATA
*
75212252 TTTTAAATTAACTTA
1 TTTTTAA-TAA--TA
*
75212267 ATTTTAA-AATA
1 TTTTTAATAATA
75212278 TTTTTAAT-ATA
1 TTTTTAATAATA
75212289 TTTT
1 TTTT
75212293 CATAAATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
10 6 0.15
11 18 0.44
12 9 0.22
13 2 0.05
14 1 0.02
15 5 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTTAATAATA
Found at i:75212331 original size:20 final size:20
Alignment explanation
Indices: 75212306--75212344 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
75212296 AAATTTTACA
75212306 ATTTTTCATA-ATTATATAAT
1 ATTTTT-ATAGATTATATAAT
*
75212326 ATTTTTATAGTTTATATAA
1 ATTTTTATAGATTATATAA
75212345 ATTAAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (20 bp):
ATTTTTATAGATTATATAAT
Found at i:75212400 original size:19 final size:19
Alignment explanation
Indices: 75212353--75212403 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
75212343 AAATTAAACA
75212353 AATAGTTTTTATAATTTAT
1 AATAGTTTTTATAATTTAT
* *
75212372 -ATATTTTTTAGTCATTTAT
1 AATAGTTTTTA-TAATTTAT
75212391 AATA-TTTTTATAA
1 AATAGTTTTTATAA
75212404 GTTTTTTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
18 11 0.41
19 13 0.48
20 3 0.11
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (19 bp):
AATAGTTTTTATAATTTAT
Found at i:75212474 original size:10 final size:9
Alignment explanation
Indices: 75212358--75212481 Score: 60
Period size: 9 Copynumber: 13.7 Consensus size: 9
75212348 AAACAAATAG
75212358 TTTTTATAA
1 TTTTTATAA
* *
75212367 TTTATATAT
1 TTTTTATAA
*
75212376 TTTTTAGTCA
1 TTTTTA-TAA
*
75212386 TTTATA-ATA
1 TTTTTATA-A
75212395 TTTTTATAA
1 TTTTTATAA
75212404 GTTTTT-TAA
1 -TTTTTATAA
75212413 TTTTTAT--
1 TTTTTATAA
**
75212420 TTTGTT-GCA
1 TTT-TTATAA
* * *
75212429 CTTATATAT
1 TTTTTATAA
75212438 TTTTTATAA
1 TTTTTATAA
* *
75212447 TCTTTAAATA
1 TTTTTATA-A
75212457 TTTTTATAA
1 TTTTTATAA
75212466 TTTTCTATAA
1 TTTT-TATAA
75212476 TTTTTA
1 TTTTTA
75212482 ACATTTTTTA
Statistics
Matches: 83, Mismatches: 21, Indels: 22
0.66 0.17 0.17
Matches are distributed among these distances:
7 3 0.04
8 8 0.10
9 44 0.53
10 28 0.34
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:75212474 original size:29 final size:30
Alignment explanation
Indices: 75212430--75212492 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
75212420 TTTGTTGCAC
*
75212430 TTATATATTTTTTATAATCTTTAA-ATATTT
1 TTATATATTTTCTATAATCTTTAACAT-TTT
*
75212460 TTATA-ATTTTCTATAATTTTTAACATTTT
1 TTATATATTTTCTATAATCTTTAACATTTT
75212489 TTAT
1 TTAT
75212493 TAAATTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 23 0.77
30 7 0.23
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (30 bp):
TTATATATTTTCTATAATCTTTAACATTTT
Found at i:75212478 original size:19 final size:18
Alignment explanation
Indices: 75212433--75212481 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
75212423 GTTGCACTTA
*
75212433 TATATTTTTTATAATCTT
1 TATAATTTTTATAATCTT
* *
75212451 TAAATATTTTTATAATTTT
1 TATA-ATTTTTATAATCTT
75212470 CTATAATTTTTA
1 -TATAATTTTTA
75212482 ACATTTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 3 0.12
19 19 0.76
20 3 0.12
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (18 bp):
TATAATTTTTATAATCTT
Found at i:75215169 original size:32 final size:31
Alignment explanation
Indices: 75215095--75215170 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
75215085 AGTACAAGAA
* *
75215095 TAGTCACCCAACTATTAAGTTTGTTCTATTT
1 TAGTCACTCAACTATTAAGTTTGTTATATTT
* * * *
75215126 TGGTCACTCAACTATTAATTTTTTTATTTATT
1 TAGTCACTCAACTATTAAGTTTGTTATAT-TT
75215158 TAGTCACTCAACT
1 TAGTCACTCAACT
75215171 TTTTAAAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 23 0.62
32 14 0.38
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.47
Consensus pattern (31 bp):
TAGTCACTCAACTATTAAGTTTGTTATATTT
Found at i:75228249 original size:21 final size:21
Alignment explanation
Indices: 75228208--75228249 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
75228198 TTATGTTTTT
**
75228208 TTTTTATTTTTTTACTTTTGA
1 TTTTTATTTTTTTACAATTGA
75228229 TTTTTATTGTTTTTA-AATTGA
1 TTTTTATT-TTTTTACAATTGA
75228250 AAATTACATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.19, C:0.02, G:0.07, T:0.71
Consensus pattern (21 bp):
TTTTTATTTTTTTACAATTGA
Found at i:75229999 original size:29 final size:28
Alignment explanation
Indices: 75229967--75230161 Score: 116
Period size: 28 Copynumber: 6.8 Consensus size: 28
75229957 TAAAAATTAT
75229967 TTAAATTAGGGTTTATGATTTTAAATGAATTA
1 TTAAATTAGGGTTTATG-TTTTAAAT-AA--A
* * * *
75229999 ATAAATTAAGGTTTAAAGGTTTAAATAAA
1 TTAAATTAGGGTTT-ATGTTTTAAATAAA
*
75230028 TAAAATTA-GG-----GTTTTAAATAAA
1 TTAAATTAGGGTTTATGTTTTAAATAAA
* * *
75230050 TTAAACTAAGATTTATGGTGTTTAAATAAATAAA
1 TTAAATTAGGGTTTA---TGTTT---TAAATAAA
*
75230084 TTAAATTAGGGTTCTAGTGTTTTAAATAAT
1 TTAAATTAGGGTT-TA-TGTTTTAAATAAA
* * *
75230114 TTAAATTAGGGTTTATGGTTAAAATTAA
1 TTAAATTAGGGTTTATGTTTTAAATAAA
75230142 TTAAATTAGGGTTTA-GTTTT
1 TTAAATTAGGGTTTATGTTTT
75230162 TTTTAAAAAT
Statistics
Matches: 129, Mismatches: 20, Indels: 33
0.71 0.11 0.18
Matches are distributed among these distances:
22 17 0.13
23 1 0.01
27 3 0.02
28 26 0.20
29 9 0.07
30 20 0.16
31 6 0.05
32 19 0.15
33 8 0.06
34 18 0.14
35 2 0.02
ACGTcount: A:0.41, C:0.01, G:0.15, T:0.43
Consensus pattern (28 bp):
TTAAATTAGGGTTTATGTTTTAAATAAA
Found at i:75230111 original size:30 final size:29
Alignment explanation
Indices: 75230033--75230163 Score: 120
Period size: 28 Copynumber: 4.3 Consensus size: 29
75230023 ATAAATAAAA
* * * *
75230033 TTAGGGTTTTAAATAAATTAAACTAAGAT
1 TTAGTGTTTTAAATAAATTAAATTAGGGT
75230062 TTATGGTGTTTAAATAAATAAATTAAATTAGGGT
1 TTA--GTGTTT---TAAATAAATTAAATTAGGGT
*
75230096 TCTAGTGTTTTAAATAATTTAAATTAGGGT
1 T-TAGTGTTTTAAATAAATTAAATTAGGGT
* * *
75230126 TTA-TGGTTAAAATTAATTAAATTAGGGT
1 TTAGTGTTTTAAATAAATTAAATTAGGGT
*
75230154 TTAGTTTTTT
1 TTAGTGTTTT
75230164 TTAAAAATAA
Statistics
Matches: 83, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
28 24 0.29
29 8 0.10
30 20 0.24
31 5 0.06
33 6 0.07
34 18 0.22
35 2 0.02
ACGTcount: A:0.37, C:0.02, G:0.16, T:0.45
Consensus pattern (29 bp):
TTAGTGTTTTAAATAAATTAAATTAGGGT
Found at i:75230511 original size:126 final size:127
Alignment explanation
Indices: 75230216--75230593 Score: 636
Period size: 126 Copynumber: 3.0 Consensus size: 127
75230206 ATTTTGACAT
* * *
75230216 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTAAAAAATACTTCAAGAATGATGC
1 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGAAGGATGC
* * *
75230281 ACTGTCAGCAAAATTAT-AGAAAAAAATCTCCCACGTGGACGCTCTTTTTCTATAGTAGTTCC
66 ACTGTCAGCAAAATT-TCTGAAAAAAAGCTCCCACGTGGACGCCCTTTTTCTATAGTAGTTCC
*
75230343 TAAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGAAGGATGC
1 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGAAGGATGC
75230408 ACTGTCAGCAAAATTTCTGAAAAAAA-CTCCCACGTGGACGCCCTTTTTCTATAGTAGTTCC
66 ACTGTCAGCAAAATTTCTGAAAAAAAGCTCCCACGTGGACGCCCTTTTTCTATAGTAGTTCC
* *
75230469 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGAATGC
1 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGAAGGATGC
*
75230534 ACTGTCAGCAAAATTTCT-AAAAAAAGCTCCCACGTGGATGCCCTTTTTCTATAGTAGTTC
66 ACTGTCAGCAAAATTTCTGAAAAAAAGCTCCCACGTGGACGCCCTTTTTCTATAGTAGTTC
75230594 ATGCTTGGCC
Statistics
Matches: 239, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
125 7 0.03
126 148 0.62
127 84 0.35
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (127 bp):
TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGAAGGATGC
ACTGTCAGCAAAATTTCTGAAAAAAAGCTCCCACGTGGACGCCCTTTTTCTATAGTAGTTCC
Found at i:75231732 original size:18 final size:18
Alignment explanation
Indices: 75231709--75231775 Score: 80
Period size: 18 Copynumber: 3.7 Consensus size: 18
75231699 GAATGATTAT
*
75231709 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAATCAG
* *
75231727 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAG
* * *
75231745 TTATTCAATAATAATAAG
1 TTATTCAGTAACAATCAG
75231763 TTATTCAGTAACA
1 TTATTCAGTAACA
75231776 GTCGATCTTT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAATCAG
Found at i:75231963 original size:59 final size:53
Alignment explanation
Indices: 75231897--75232016 Score: 186
Period size: 53 Copynumber: 2.3 Consensus size: 53
75231887 CCGAAACAGT
* * * *
75231897 AACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCAGAACAAATTCGA
1 AACAGTAACAGTAACATTACGGTACACAGAGTACCTCATCAGAACAAATCCGA
* *
75231950 AACAGTAACAGTAACATTACGGTACACAGAGTACCTCATCGGAACAAATCCAA
1 AACAGTAACAGTAACATTACGGTACACAGAGTACCTCATCAGAACAAATCCGA
75232003 AACAGTAACAGTAA
1 AACAGTAACAGTAA
75232017 TGGTAACAGT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 61 1.00
ACGTcount: A:0.44, C:0.22, G:0.17, T:0.17
Consensus pattern (53 bp):
AACAGTAACAGTAACATTACGGTACACAGAGTACCTCATCAGAACAAATCCGA
Found at i:75232023 original size:59 final size:57
Alignment explanation
Indices: 75231890--75232027 Score: 158
Period size: 53 Copynumber: 2.4 Consensus size: 57
75231880 GCCGAAGCCG
* * * *
75231890 AAACAGTAACAGTAACAGTAGCAGTATGGTACACAGAGTACCTCATCAGAACAAATTCG
1 AAACAGTAACAGT-A-AGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCA
* *
75231949 AAACAGTAAC----AGTAACATTACGGTACACAGAGTACCTCATCGGAACAAATCCA
1 AAACAGTAACAGTAAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCA
75232002 AAACAGTAACAGTAATGGTAACAGTA
1 AAACAGTAACAGTAA--GTAACAGTA
75232028 ACAATATCCG
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
53 47 0.71
57 1 0.02
59 18 0.27
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.18
Consensus pattern (57 bp):
AAACAGTAACAGTAAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCA
Found at i:75236874 original size:30 final size:30
Alignment explanation
Indices: 75236810--75236875 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
75236800 AATCGGAAGA
* * * *
75236810 TTTGGCACTAAGTGTGCGGCTTAAATTAAT
1 TTTGGCACTAAGTGTGAGACTTAAACTAAC
* *
75236840 TTTGGCACTAAGTGTGAGATTTAAACTAGC
1 TTTGGCACTAAGTGTGAGACTTAAACTAAC
75236870 TTTGGC
1 TTTGGC
75236876 TACTTGAGGC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGAGACTTAAACTAAC
Found at i:75238237 original size:46 final size:46
Alignment explanation
Indices: 75238170--75238259 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
75238160 CCCTTGTAAT
*
75238170 ACCCCTACCTGTATTCATTGCCAGAATAGGGTACGAGGCATTACCG
1 ACCCCTACCCGTATTCATTGCCAGAATAGGGTACGAGGCATTACCG
*
75238216 ACCCCTACCCGTATTCATTGCCGGAATAGGGTACGAGGCATTAC
1 ACCCCTACCCGTATTCATTGCCAGAATAGGGTACGAGGCATTAC
75238260 TGGAGTTTAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (46 bp):
ACCCCTACCCGTATTCATTGCCAGAATAGGGTACGAGGCATTACCG
Found at i:75246072 original size:22 final size:23
Alignment explanation
Indices: 75246047--75246092 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
75246037 CAACCAAATC
75246047 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
75246069 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
75246092 A
1 A
75246093 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:75246098 original size:23 final size:23
Alignment explanation
Indices: 75246054--75246098 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
75246044 ATCAATTCAA
*
75246054 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
75246077 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
75246099 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:75251468 original size:46 final size:46
Alignment explanation
Indices: 75251362--75251624 Score: 384
Period size: 46 Copynumber: 5.6 Consensus size: 46
75251352 TTTGACATGA
* * * *
75251362 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTC-TTTTCATGTCACGT
75251412 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
* * *
75251458 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
75251504 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
* * *
75251550 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
75251596 TGCCATGGTATCTTTCAACCATGGTCTTA
1 TGCCATGGTATCTTTCAACCATGGTCTTA
75251625 CACATTTCAT
Statistics
Matches: 199, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
45 5 0.03
46 169 0.85
47 1 0.01
49 1 0.01
50 23 0.12
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
Found at i:75251574 original size:138 final size:141
Alignment explanation
Indices: 75251362--75251639 Score: 429
Period size: 138 Copynumber: 2.0 Consensus size: 141
75251352 TTTGACATGA
* * *
75251362 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTT
1 TGCCATAGTATCTTTCAACCATGGTCTTA-TCATTCATTTTCTGTCACGTTGCCATGGTATCTTT
* * * **
75251427 CAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCAT
65 CAACCATGGTCTTATTCATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACAT
75251492 TTCATATCAGGT
130 TTCATATCAGGT
*
75251504 TGCCATGGTATCTTTCAACCATGGTC-T-T-ATTC-TTTTCATGTCACGTTGCCATGGTATCTTT
1 TGCCATAGTATCTTTCAACCATGGTCTTATCATTCATTTTC-TGTCACGTTGCCATGGTATCTTT
75251565 CAACCATGGTCTTATTCATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACAT
65 CAACCATGGTCTTATTCATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACAT
75251630 TTCATATCAG
130 TTCATATCAG
75251640 AGAGCACACT
Statistics
Matches: 126, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
137 5 0.04
138 96 0.76
139 1 0.01
141 1 0.01
142 23 0.18
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (141 bp):
TGCCATAGTATCTTTCAACCATGGTCTTATCATTCATTTTCTGTCACGTTGCCATGGTATCTTTC
AACCATGGTCTTATTCATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATT
TCATATCAGGT
Found at i:75251631 original size:46 final size:46
Alignment explanation
Indices: 75251410--75251638 Score: 386
Period size: 46 Copynumber: 5.0 Consensus size: 46
75251400 TTTCTGTCAT
* *
75251410 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
*
75251456 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* *
75251502 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
75251548 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* **
75251594 ATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
75251639 GAGAGCACAC
Statistics
Matches: 172, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 172 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
Found at i:75253689 original size:16 final size:16
Alignment explanation
Indices: 75253664--75253695 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
75253654 AATCCCAATT
75253664 TTTCTCTTTTTCCTTC
1 TTTCTCTTTTTCCTTC
*
75253680 TTTCTTTTTTTCCTTC
1 TTTCTCTTTTTCCTTC
75253696 CCCCTGCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTCTCTTTTTCCTTC
Found at i:75253755 original size:16 final size:18
Alignment explanation
Indices: 75253726--75253766 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
75253716 TCATCCTTTC
75253726 TTTCTTTTTCTATT-CTT
1 TTTCTTTTTCTATTCCTT
75253743 TTTCTTTTT-TATTCCTT
1 TTTCTTTTTCTATTCCTT
*
75253760 TTACTTT
1 TTTCTTT
75253767 ATATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCTTTTTCTATTCCTT
Found at i:75254809 original size:30 final size:30
Alignment explanation
Indices: 75254754--75254839 Score: 109
Period size: 30 Copynumber: 2.9 Consensus size: 30
75254744 GGCATTGGGT
** *
75254754 CCGGTGATTGTGTGGGTACTGTTGATAGGC
1 CCGGTGATTGTGTGGGCGCTATTGATAGGC
*
75254784 CCGGTGATTGTGTGGGCGCTATTGATGGGC
1 CCGGTGATTGTGTGGGCGCTATTGATAGGC
* * *
75254814 TCGATAATTGTGTGGGCGCTATTGAT
1 CCGGTGATTGTGTGGGCGCTATTGAT
75254840 GGGCTCGTCC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.14, C:0.14, G:0.38, T:0.34
Consensus pattern (30 bp):
CCGGTGATTGTGTGGGCGCTATTGATAGGC
Found at i:75254840 original size:30 final size:30
Alignment explanation
Indices: 75254790--75254846 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
75254780 AGGCCCGGTG
75254790 ATTGTGTGGGCGCTATTGATGGGCTCGATA
1 ATTGTGTGGGCGCTATTGATGGGCTCGATA
75254820 ATTGTGTGGGCGCTATTGATGGGCTCG
1 ATTGTGTGGGCGCTATTGATGGGCTCG
75254847 TCCCATTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.14, C:0.14, G:0.39, T:0.33
Consensus pattern (30 bp):
ATTGTGTGGGCGCTATTGATGGGCTCGATA
Found at i:75255592 original size:85 final size:85
Alignment explanation
Indices: 75255485--75255654 Score: 277
Period size: 85 Copynumber: 2.0 Consensus size: 85
75255475 TAACTTGCCG
* * * **
75255485 GATGGTTCGACTTAATTAAATAAATTTTCAGCATACAATTTTATTTTATATCTATGGAATAATTG
1 GATGGTTCCACCTAATTAAATAAATTTTCAGCATACAATTTTATTTTAAATCTATACAATAATTG
*
75255550 TAAAATCAAATAAAATTTTT
66 TAAAATCAAATAAAAATTTT
*
75255570 GATGGTTCCACCTAATTAAATAAATTTTCAGCATATAATTTTATTTTAAATCTATACAATAATTG
1 GATGGTTCCACCTAATTAAATAAATTTTCAGCATACAATTTTATTTTAAATCTATACAATAATTG
75255635 TAAAATCAAATAAAAATTTT
66 TAAAATCAAATAAAAATTTT
75255655 ACCTCGTTAT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 78 1.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (85 bp):
GATGGTTCCACCTAATTAAATAAATTTTCAGCATACAATTTTATTTTAAATCTATACAATAATTG
TAAAATCAAATAAAAATTTT
Found at i:75256427 original size:23 final size:24
Alignment explanation
Indices: 75256398--75256481 Score: 80
Period size: 25 Copynumber: 3.3 Consensus size: 24
75256388 AATAAAAATT
75256398 AATTAAAATTACATAAATGAAAAA
1 AATTAAAATTACATAAATGAAAAA
* * *
75256422 AA-TAAAATAAAATTTAAATAATAAAA
1 AATTAAAATTACA--TAAATGA-AAAA
75256448 TTAATTAAAATTACATAAATGAAAAA
1 --AATTAAAATTACATAAATGAAAAA
75256474 ATATTAAA
1 A-ATTAAA
75256482 TAATTTTTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
23 8 0.17
24 3 0.06
25 12 0.26
26 8 0.17
27 6 0.13
28 2 0.04
29 8 0.17
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (24 bp):
AATTAAAATTACATAAATGAAAAA
Found at i:75256467 original size:19 final size:19
Alignment explanation
Indices: 75256393--75256467 Score: 54
Period size: 18 Copynumber: 4.2 Consensus size: 19
75256383 TATAAAATAA
75256393 AAATTAATTAAAATTACAT
1 AAATTAATTAAAATTACAT
* * * *
75256412 AAATGAA-AAAAATAAAAT
1 AAATTAATTAAAATTACAT
*
75256430 -AA--AATTTAAA-TA-AT
1 AAATTAATTAAAATTACAT
75256444 AAAATTAATTAAAATTACAT
1 -AAATTAATTAAAATTACAT
75256464 AAAT
1 AAAT
75256468 GAAAAAATAT
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
14 2 0.05
15 3 0.07
16 5 0.12
17 2 0.05
18 15 0.37
19 12 0.29
20 2 0.05
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (19 bp):
AAATTAATTAAAATTACAT
Found at i:75256479 original size:29 final size:28
Alignment explanation
Indices: 75256391--75256480 Score: 116
Period size: 28 Copynumber: 3.3 Consensus size: 28
75256381 AATATAAAAT
75256391 AAAAATTAATTAAAATTACATAAATGAA
1 AAAAATTAATTAAAATTACATAAATGAA
* *
75256419 AAAAATAAAATAAAATT---TAAAT-AA
1 AAAAATTAATTAAAATTACATAAATGAA
*
75256443 TAAAATTAATTAAAATTACATAAATGAA
1 AAAAATTAATTAAAATTACATAAATGAA
75256471 AAAATATTAA
1 AAAA-ATTAA
75256481 ATAATTTTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
24 16 0.31
25 5 0.10
27 5 0.10
28 20 0.39
29 5 0.10
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (28 bp):
AAAAATTAATTAAAATTACATAAATGAA
Found at i:75264338 original size:17 final size:17
Alignment explanation
Indices: 75264304--75264354 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
75264294 CCTGAGCATT
* *
75264304 TTTTAAATTTTATAATA
1 TTTTATATTATATAATA
*
75264321 TTTTATATTATATTATA
1 TTTTATATTATATAATA
*
75264338 TTTATATATTATGTAAT
1 TTT-TATATTATATAAT
75264355 TTATAACATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 17 0.61
18 11 0.39
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (17 bp):
TTTTATATTATATAATA
Found at i:75264496 original size:25 final size:26
Alignment explanation
Indices: 75264438--75264496 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
75264428 AGATGACAAT
*
75264438 ATAAAAAAAATTTAATAAATAGAAAA
1 ATAAATAAAATTTAATAAATAGAAAA
* * *
75264464 ATATATAAAA-TTATTAAATATAAAA
1 ATAAATAAAATTTAATAAATAGAAAA
*
75264489 TTAAATAA
1 ATAAATAA
75264497 TATAAATATT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 19 0.70
26 8 0.30
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.31
Consensus pattern (26 bp):
ATAAATAAAATTTAATAAATAGAAAA
Found at i:75264498 original size:15 final size:15
Alignment explanation
Indices: 75264462--75264502 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
75264452 ATAAATAGAA
75264462 AAAT-ATATAAAATT
1 AAATAATATAAAATT
*
75264476 -ATTAAATATAAAATT
1 AAAT-AATATAAAATT
75264491 AAATAATATAAA
1 AAATAATATAAA
75264503 TATTTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
13 2 0.09
15 18 0.82
16 2 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AAATAATATAAAATT
Found at i:75264526 original size:31 final size:32
Alignment explanation
Indices: 75264454--75264529 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 32
75264444 AAAATTTAAT
75264454 AAATAGAAAAAT-ATATAAAATTATTAAATATA
1 AAATA-AAAAATAATATAAAATTATTAAATATA
* *
75264486 AAAT--TAAATAATATAAATATTTTTAAA-A-A
1 AAATAAAAAATAATATAAA-ATTATTAAATATA
75264515 AAATAAAAAATAATA
1 AAATAAAAAATAATA
75264530 CAGAACCTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
29 9 0.24
30 8 0.22
31 16 0.43
32 4 0.11
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (32 bp):
AAATAAAAAATAATATAAAATTATTAAATATA
Found at i:75267143 original size:23 final size:23
Alignment explanation
Indices: 75267117--75267162 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
75267107 TTCTATAAAG
75267117 GATTTCTACAGTAATACTTTATA
1 GATTTCTACAGTAATACTTTATA
75267140 GATTTCTACAGTAATACTTTATA
1 GATTTCTACAGTAATACTTTATA
75267163 CGATAATCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (23 bp):
GATTTCTACAGTAATACTTTATA
Found at i:75267178 original size:23 final size:23
Alignment explanation
Indices: 75267121--75267172 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
75267111 ATAAAGGATT
*
75267121 TCTACAGTAATACTTTATAGATT
1 TCTACAGTAATACTTTATAGATA
75267144 TCTACAGTAATACTTTATACGATAA
1 TCTACAGTAATACTTTATA-GAT-A
75267169 TCTA
1 TCTA
75267173 ATAATATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 19 0.73
24 3 0.12
25 4 0.15
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.40
Consensus pattern (23 bp):
TCTACAGTAATACTTTATAGATA
Found at i:75270279 original size:43 final size:42
Alignment explanation
Indices: 75270232--75270386 Score: 132
Period size: 42 Copynumber: 3.6 Consensus size: 42
75270222 GATCACATAT
*
75270232 CGATGCCAATAGCCCAGCTATGGTCTTACATGAAATCGCATGC
1 CGATGCC-ATAGCCCAGATATGGTCTTACATGAAATCGCATGC
* * * * * * * **
75270275 CGATGTCATATCCCAGATATGGCCTTATACGAAGTCTCATTTT
1 CGATGCCATAGCCCAGATATGGTCTTACATGAAATCGCA-TGC
* ** *
75270318 CGAAGCCAT-GTCCCAGACGTGGTCTTACATTAAATCGCATGC
1 CGATGCCATAG-CCCAGATATGGTCTTACATGAAATCGCATGC
* *
75270360 CGATGTCATATCCCAGATATGGTCTTA
1 CGATGCCATAGCCCAGATATGGTCTTA
75270387 TACAGAATCT
Statistics
Matches: 81, Mismatches: 28, Indels: 7
0.70 0.24 0.06
Matches are distributed among these distances:
42 47 0.58
43 34 0.42
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (42 bp):
CGATGCCATAGCCCAGATATGGTCTTACATGAAATCGCATGC
Found at i:75276665 original size:11 final size:11
Alignment explanation
Indices: 75276637--75276678 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
75276627 GTCTTATCAC
*
75276637 AATTCTCTCTA
1 AATTCTTTCTA
75276648 AATTCTTTCTA
1 AATTCTTTCTA
75276659 AATTCTTTC-A
1 AATTCTTTCTA
75276669 AATTTCTTTC
1 AA-TTCTTTC
75276679 AATTTTTGTC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
10 3 0.10
11 26 0.90
ACGTcount: A:0.26, C:0.21, G:0.00, T:0.52
Consensus pattern (11 bp):
AATTCTTTCTA
Found at i:75277292 original size:11 final size:11
Alignment explanation
Indices: 75277278--75277318 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
75277268 TGTTTTCTCC
75277278 CTATTTTGCTA
1 CTATTTTGCTA
*
75277289 CTATTTTACTA
1 CTATTTTGCTA
* *
75277300 TTATGTTGCTA
1 CTATTTTGCTA
75277311 CTATTTTG
1 CTATTTTG
75277319 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:75279092 original size:18 final size:18
Alignment explanation
Indices: 75279069--75279106 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
75279059 TGCCAGGTAC
*
75279069 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
*
75279087 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTATAT
75279105 GT
1 GT
75279107 TTTCTTTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:75279806 original size:129 final size:128
Alignment explanation
Indices: 75279509--75279884 Score: 594
Period size: 128 Copynumber: 2.9 Consensus size: 128
75279499 TGTAGAAACT
* * *
75279509 TTTTTTATATAG-TTTCATATAATAAAATAAAAGTCGTTTTTAATATTTTAATTGTACTTTATTT
1 TTTTTTATATAGTTTTAAT-TAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTT
* *
75279573 TTTTTAATTTTATTAAAATAAATATTCTTTTAAATTAGCCAATATTTTTAGTATTTTATATTTA
65 TTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTATATTTA
* *
75279637 TTTTTTATATAGTTTTAATTAACAAAATAAAAGTTATTTTTAATATTTTAATTGTACTTTACTTT
1 TTTTTTATATAGTTTTAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTT
* *
75279702 TTTTAATTTTATTAAAATAAATGTTCTTTGAAATTATCCAATATTTTTATTATTTTTATATTTA
66 TTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTA-TTTTATATTTA
*
75279766 TTTTTTATATAGTTTTAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGAACTTTACTTT
1 TTTTTTATATAGTTTTAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTAC-TT
*
75279831 TTTTTAATTTTA-AAACAATAAATGTTCTTTTAAATTAGCCAATAATTTTTATTA
65 TTTTTAATTTTATTAA-AATAAATGTTCTTTTAAATTAGCCAAT-ATTTTTATTA
75279885 AAATAAATGT
Statistics
Matches: 228, Mismatches: 15, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
128 102 0.45
129 77 0.34
130 39 0.17
131 10 0.04
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.55
Consensus pattern (128 bp):
TTTTTTATATAGTTTTAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTT
TTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTATATTTA
Found at i:75283199 original size:126 final size:125
Alignment explanation
Indices: 75282956--75283231 Score: 392
Period size: 126 Copynumber: 2.2 Consensus size: 125
75282946 TCTAAGCCCA
* * * *
75282956 TTTT-AGATACTTCTGTAGAAAAGAGTGTCCATATGGGAGCTTTTTTCCATAATTTTGCTGACAG
1 TTTTCAGATACTACTATAGAAAAGAGCGTCCACATGGGAGCTTTTTTCCATAATTTTGCTGACAG
*
75283020 TGTATCCTTCTTGAAGCATTTTTGACACTATTAGCTCAGAAACATCTTCTCAAAATTATT
66 TGCATCCTTCTTGAAGCATTTTTGACACTATTAGCTCAGAAACATCTTCTCAAAATTATT
* *
75283080 TTTTCAGATACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTGACA
1 TTTTCAGATACTACTATAG-AAAAGAGCGTCCACATGGGAGCTTTTTTCCATAATTTTGCTGACA
* ** * * * * *
75283145 GTGCATCTTTCTTGAAGTGTTTTTGACACTATTTGTTCAGAACCGTTTTCTCAAAATTATT
65 GTGCATCCTTCTTGAAGCATTTTTGACACTATTAGCTCAGAAACATCTTCTCAAAATTATT
75283206 TTTTCAGATACTACTATAGTAAAAGA
1 TTTTCAGATACTACTATAG-AAAAGA
75283232 TTAACCCTAA
Statistics
Matches: 134, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
124 4 0.03
125 12 0.09
126 118 0.88
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (125 bp):
TTTTCAGATACTACTATAGAAAAGAGCGTCCACATGGGAGCTTTTTTCCATAATTTTGCTGACAG
TGCATCCTTCTTGAAGCATTTTTGACACTATTAGCTCAGAAACATCTTCTCAAAATTATT
Found at i:75284666 original size:11 final size:10
Alignment explanation
Indices: 75284652--75284703 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
75284642 TTTTTTAAAA
75284652 TTATAACTTTT
1 TTATAA-TTTT
75284663 TTATATATTTT
1 TTATA-ATTTT
*
75284674 TTAGAATTTT
1 TTATAATTTT
**
75284684 TT-TAAAATT
1 TTATAATTTT
75284693 TTATAATTTT
1 TTATAATTTT
75284703 T
1 T
75284704 CTTAAAAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
9 6 0.18
10 13 0.39
11 13 0.39
12 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (10 bp):
TTATAATTTT
Found at i:75286086 original size:28 final size:27
Alignment explanation
Indices: 75286040--75286107 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
75286030 TTTAAAATGT
* *
75286040 CATAAAGAGAATTTAGAATAAATATTA
1 CATAAAAAGAATTTAGAATAAATAATA
*
75286067 CATAAAAAGTAATTTGGAATAAATAATA
1 CATAAAAAG-AATTTAGAATAAATAATA
*
75286095 CATATATAAGAAT
1 CATA-AAAAGAAT
75286108 ACATAACAGC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 8 0.23
28 23 0.66
29 4 0.11
ACGTcount: A:0.56, C:0.04, G:0.10, T:0.29
Consensus pattern (27 bp):
CATAAAAAGAATTTAGAATAAATAATA
Found at i:75293877 original size:5 final size:5
Alignment explanation
Indices: 75293867--75293895 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
75293857 GTTCTTTATT
75293867 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
75293896 CACAAATGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:75299054 original size:16 final size:16
Alignment explanation
Indices: 75299018--75299057 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
75299008 TGAATTACTA
* *
75299018 ATTAAAGCTTTATTCC
1 ATTACAGCTCTATTCC
75299034 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
75299050 ATTACAGC
1 ATTACAGC
75299058 GAACCAAACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:75299157 original size:16 final size:16
Alignment explanation
Indices: 75299136--75299175 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
75299126 TGAATTATTG
* *
75299136 ATTACAGCTTTATTCT
1 ATTACAGCTCTATTCC
*
75299152 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
75299168 ATTACAGC
1 ATTACAGC
75299176 GAACCAAACG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:75299163 original size:118 final size:118
Alignment explanation
Indices: 75298952--75299310 Score: 549
Period size: 118 Copynumber: 3.0 Consensus size: 118
75298942 TCATTTCATT
*
75298952 CAACCAAACATAAGAATATCATTACAATTCTATACCATTCCATTCAACTAAACAATTGAATTACT
1 CAACCAAACATAAGAATATCATTACAATTCTATTCCATTCCATTCAACTAAACAATTGAATTACT
* *
75299017 AATTAAAGCTTTATTCCATTACAGCTCTATTCCATTACAGCGAACCAAACGTG
66 GATTAAAGCTTTATTCCATTACAACTCTATTCCATTACAGCGAACCAAACGTG
* * * ** * * * * *
75299070 TAACCAAATATAAGAATATCATTACAGTTCTATTTGATTTCATCCAACCAAATAATTGAATTATT
1 CAACCAAACATAAGAATATCATTACAATTCTATTCCATTCCATTCAACTAAACAATTGAATTACT
* *
75299135 GATTACAGCTTTATTCTATTACAACTCTATTCCATTACAGCGAACCAAACGTG
66 GATTAAAGCTTTATTCCATTACAACTCTATTCCATTACAGCGAACCAAACGTG
75299188 CAACCAAACATAAGAATATCATTACAATTCTATTCCATTCCATTCAACTAAACAATTGAATTACT
1 CAACCAAACATAAGAATATCATTACAATTCTATTCCATTCCATTCAACTAAACAATTGAATTACT
75299253 GATTATAA-CTTTATTCCATTACAACTCTATTCCATTACAGAGCGAACCAAACGTG
66 GATTA-AAGCTTTATTCCATTACAACTCTATTCCATTAC--AGCGAACCAAACGTG
75299308 CAA
1 CAA
75299311 GTGTTTCCTT
Statistics
Matches: 211, Mismatches: 27, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
118 192 0.91
119 1 0.00
120 18 0.09
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.31
Consensus pattern (118 bp):
CAACCAAACATAAGAATATCATTACAATTCTATTCCATTCCATTCAACTAAACAATTGAATTACT
GATTAAAGCTTTATTCCATTACAACTCTATTCCATTACAGCGAACCAAACGTG
Found at i:75299278 original size:16 final size:16
Alignment explanation
Indices: 75299254--75299291 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
75299244 TGAATTACTG
* *
75299254 ATTATAACTTTATTCC
1 ATTACAACTCTATTCC
75299270 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
75299286 ATTACA
1 ATTACA
75299292 GAGCGAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.24, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:75303904 original size:21 final size:22
Alignment explanation
Indices: 75303869--75303909 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
75303859 CATTATTATA
75303869 AAGTCGATCAACTAACGATGCC
1 AAGTCGATCAACTAACGATGCC
75303891 AAGTCGAT-AACTAACGATG
1 AAGTCGATCAACTAACGATG
75303910 ACAAAATGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (22 bp):
AAGTCGATCAACTAACGATGCC
Found at i:75312310 original size:33 final size:33
Alignment explanation
Indices: 75312273--75312342 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 33
75312263 GATATTTACC
*
75312273 ATATAAA-ATTTTAATATTATAATTTATATGTTT
1 ATATAAATATTTTAAAATTATAATTTA-ATGTTT
* *
75312306 ATATAAATATTTTAAAATTTTAATTTAATTTTT
1 ATATAAATATTTTAAAATTATAATTTAATGTTT
75312339 ATAT
1 ATAT
75312343 TATTTTTACT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
33 16 0.48
34 17 0.52
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (33 bp):
ATATAAATATTTTAAAATTATAATTTAATGTTT
Found at i:75316567 original size:39 final size:38
Alignment explanation
Indices: 75316508--75316581 Score: 112
Period size: 39 Copynumber: 1.9 Consensus size: 38
75316498 GTTACCAAAC
* *
75316508 ATTTGCCATATTAACTCATTTGATCATGATTTAATTAAT
1 ATTTACCATATTAACACATTT-ATCATGATTTAATTAAT
*
75316547 ATTTACCATATTAACACATTTATCTTGATTTAATT
1 ATTTACCATATTAACACATTTATCATGATTTAATT
75316582 CTTTTCTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 13 0.41
39 19 0.59
ACGTcount: A:0.34, C:0.14, G:0.05, T:0.47
Consensus pattern (38 bp):
ATTTACCATATTAACACATTTATCATGATTTAATTAAT
Found at i:75317630 original size:22 final size:21
Alignment explanation
Indices: 75317598--75317653 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
75317588 TTTAAACATT
75317598 AAAATAGAAAGGAAACCTTAA
1 AAAATAGAAAGGAAACCTTAA
**
75317619 AAAACTAGAAAGGAAATGTTAAA
1 AAAA-TAGAAAGGAAACCTT-AA
75317642 AAAATAGAAAGG
1 AAAATAGAAAGG
75317654 GTTGCGTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 4 0.13
22 21 0.68
23 6 0.19
ACGTcount: A:0.62, C:0.05, G:0.18, T:0.14
Consensus pattern (21 bp):
AAAATAGAAAGGAAACCTTAA
Found at i:75323840 original size:45 final size:45
Alignment explanation
Indices: 75323776--75323864 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
75323766 TGCATGGTAG
75323776 AACTTATTCCTGGTATGTATTCTCCCATGTTCTGTCCCATGTTAC
1 AACTTATTCCTGGTATGTATTCTCCCATGTTCTGTCCCATGTTAC
*
75323821 AACTTATTCCT-GTCATGTATTCTCCCATGTTCTGTCCTATGTTA
1 AACTTATTCCTGGT-ATGTATTCTCCCATGTTCTGTCCCATGTTA
75323865 AGTGGTTTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
44 2 0.05
45 40 0.95
ACGTcount: A:0.18, C:0.26, G:0.12, T:0.44
Consensus pattern (45 bp):
AACTTATTCCTGGTATGTATTCTCCCATGTTCTGTCCCATGTTAC
Found at i:75327341 original size:4 final size:4
Alignment explanation
Indices: 75327334--75327360 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
75327324 TACATACAGA
75327334 GAGG GAGG GAGG GAGG GAGG GAGG GAG
1 GAGG GAGG GAGG GAGG GAGG GAGG GAG
75327361 AGAATGATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.74, T:0.00
Consensus pattern (4 bp):
GAGG
Found at i:75329341 original size:41 final size:37
Alignment explanation
Indices: 75329282--75329355 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
75329272 AAATTGGTGA
75329282 TTGATTTCTTCCTGTACATACATGTTCTTTCCAGAAG
1 TTGATTTCTTCCTGTACATACATGTTCTTTCCAGAAG
75329319 TTGATTTCTTCCTGTACATACATGTTCTTTCCAGAAG
1 TTGATTTCTTCCTGTACATACATGTTCTTTCCAGAAG
75329356 AGGATAGGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.43
Consensus pattern (37 bp):
TTGATTTCTTCCTGTACATACATGTTCTTTCCAGAAG
Found at i:75332693 original size:36 final size:35
Alignment explanation
Indices: 75332646--75332713 Score: 100
Period size: 36 Copynumber: 1.9 Consensus size: 35
75332636 AAACCTTTAA
*
75332646 TAATTTAATTTAATGTAAAATTTTAAAAAATAACAG
1 TAATTTAATTTAATGTAAAA-TTAAAAAAATAACAG
* *
75332682 TAATTTAATTTAGTTTAAAATTAAAAAAATAA
1 TAATTTAATTTAATGTAAAATTAAAAAAATAA
75332714 GTAACCTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 11 0.38
36 18 0.62
ACGTcount: A:0.54, C:0.01, G:0.04, T:0.40
Consensus pattern (35 bp):
TAATTTAATTTAATGTAAAATTAAAAAAATAACAG
Found at i:75335121 original size:51 final size:51
Alignment explanation
Indices: 75335050--75335217 Score: 210
Period size: 51 Copynumber: 3.2 Consensus size: 51
75335040 CTGATCACAT
*
75335050 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAATCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
75335101 TTATCACTTGTCACTGATCAGATAAGTGTAGTTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* ** *
75335152 TTGCCACTTGTCACTTATCACTGATCAGATAAGTGTAGCCGAGGCTACCACTTATCAC
1 TT---A----TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
75335210 TTGTCACT
1 TTATCACT
75335218 GATCAGAAGT
Statistics
Matches: 102, Mismatches: 8, Indels: 14
0.82 0.06 0.11
Matches are distributed among these distances:
51 56 0.55
54 1 0.01
58 45 0.44
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:75335153 original size:58 final size:58
Alignment explanation
Indices: 75335091--75335222 Score: 183
Period size: 58 Copynumber: 2.3 Consensus size: 58
75335081 CTAAATCTAC
* * **
75335091 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGTTAAAGCTACCACTTAT
1 CACTTGTCACTTATCACTTATCACTGATCAGATAAGTGTAGCCAAAGCTACCACTTAT
* * * *
75335149 CACTTGCCACTTGTCACTTATCACTGATCAGATAAGTGTAGCCGAGGCTACCACTTAT
1 CACTTGTCACTTATCACTTATCACTGATCAGATAAGTGTAGCCAAAGCTACCACTTAT
*
75335207 CACTTGTCACTGATCA
1 CACTTGTCACTTATCA
75335223 GAAGTACTCA
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
58 63 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (58 bp):
CACTTGTCACTTATCACTTATCACTGATCAGATAAGTGTAGCCAAAGCTACCACTTAT
Found at i:75338003 original size:21 final size:21
Alignment explanation
Indices: 75337979--75338020 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
75337969 ATCAAAACAA
*
75337979 AATAGTTTTACCTTTTAACTT
1 AATAGTTTTAACTTTTAACTT
75338000 AATAGTTTTAACTTTTAACTT
1 AATAGTTTTAACTTTTAACTT
75338021 TAGAAAAGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.12, G:0.05, T:0.52
Consensus pattern (21 bp):
AATAGTTTTAACTTTTAACTT
Found at i:75338379 original size:19 final size:19
Alignment explanation
Indices: 75338319--75338394 Score: 68
Period size: 19 Copynumber: 4.1 Consensus size: 19
75338309 CAAAATTATT
**
75338319 ATTTTATAAAATTTTTAAA
1 ATTTTATAATTTTTTTAAA
* *
75338338 A--TT-TAACTTTTTTATAT
1 ATTTTATAATTTTTTTA-AA
*
75338355 ATTTTTTAGATTTTTTTAAA
1 ATTTTATA-ATTTTTTTAAA
75338375 ATTTTATAATTTTTTTAAA
1 ATTTTATAATTTTTTTAAA
75338394 A
1 A
75338395 ATACAAAATT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
16 9 0.20
17 4 0.09
19 15 0.33
20 10 0.22
21 8 0.17
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (19 bp):
ATTTTATAATTTTTTTAAA
Found at i:75338395 original size:20 final size:21
Alignment explanation
Indices: 75338345--75338396 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
75338335 AAAATTTAAC
* * *
75338345 TTTTTTATATATTTTTTAGAT
1 TTTTTTAAAAATTTTATAGAT
75338366 TTTTTT-AAAATTTTATA-AT
1 TTTTTTAAAAATTTTATAGAT
75338385 TTTTTTAAAAAT
1 TTTTTTAAAAAT
75338397 ACAAAATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 8 0.30
20 13 0.48
21 6 0.22
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTTTTAAAAATTTTATAGAT
Found at i:75342461 original size:16 final size:17
Alignment explanation
Indices: 75342440--75342474 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
75342430 AGATGTGTAA
*
75342440 GTAATGAA-TTAATCAT
1 GTAATGAACTTAAACAT
75342456 GTAATGAACTTAAACAT
1 GTAATGAACTTAAACAT
75342473 GT
1 GT
75342475 TAAGTAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (17 bp):
GTAATGAACTTAAACAT
Found at i:75342782 original size:18 final size:18
Alignment explanation
Indices: 75342755--75342795 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
75342745 GTTTTTGTAG
75342755 TTCT-TTCACTAGTTATT
1 TTCTATTCACTAGTTATT
75342772 TTCTATTCACTAGTTATT
1 TTCTATTCACTAGTTATT
75342790 TTCTAT
1 TTCTAT
75342796 GTACCTAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.20, C:0.17, G:0.05, T:0.59
Consensus pattern (18 bp):
TTCTATTCACTAGTTATT
Found at i:75353248 original size:27 final size:27
Alignment explanation
Indices: 75353200--75353355 Score: 151
Period size: 27 Copynumber: 5.8 Consensus size: 27
75353190 GCGACGTTGC
* *
75353200 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
75353227 CAGATATTGTGCCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* * *
75353253 CAGATAGATGTCGCAGAGCCACTAGAT-
1 CAGATA-TTGTGGCAGAGCCACCAGATA
* *
75353280 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
75353307 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
75353334 CAGATAATTGTGGCATAGCCAC
1 CAGAT-ATTGTGGCAGAGCCAC
75353356 TAGGACGCTT
Statistics
Matches: 107, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
26 9 0.08
27 94 0.88
28 4 0.04
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:75353307 original size:54 final size:54
Alignment explanation
Indices: 75353218--75353355 Score: 197
Period size: 54 Copynumber: 2.6 Consensus size: 54
75353208 GTGACGAAGT
* * *
75353218 CACCAGATACAGAT-ATTGTGCCAGAGCCACCAGAACAGATAGATGTCGCAGAGC
1 CACCAGAT-CAGATAATCGTGGCATAGCCACCAGAACAGATAGATGTCGCAGAGC
* * *
75353272 CACTAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATAGATGTCGCAGAGC
*
75353326 CACCAGATCAGATAATTGTGGCATAGCCAC
1 CACCAGATCAGATAATCGTGGCATAGCCAC
75353356 TAGGACGCTT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
53 5 0.07
54 70 0.93
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATAGATGTCGCAGAGC
Found at i:75355010 original size:26 final size:26
Alignment explanation
Indices: 75354979--75355086 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
75354969 TGAAATGCCC
*
75354979 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
75355005 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75355031 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
75355057 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75355083 ATCA
1 ATCA
75355087 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:75360394 original size:27 final size:27
Alignment explanation
Indices: 75360352--75360484 Score: 191
Period size: 27 Copynumber: 5.0 Consensus size: 27
75360342 GTCACTAGAT
75360352 ACAGATAT-TGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
75360378 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
75360405 TCAGATA-ATCGTGGCATAGCCACCAGA
1 ACAGATATAT-GTGGCAGAGCCACCAGA
75360432 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
75360459 TCAGATA-ATTGTGGCATAGCCACCAG
1 ACAGATATA-TGTGGCAGAGCCACCAG
75360485 GATGCTTCCT
Statistics
Matches: 97, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
26 11 0.11
27 84 0.87
28 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:75360428 original size:54 final size:54
Alignment explanation
Indices: 75360348--75360484 Score: 240
Period size: 54 Copynumber: 2.5 Consensus size: 54
75360338 CGAAGTCACT
*
75360348 AGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
*
75360402 AGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
75360456 AGATCAGATAATTGTGGCATAGCCACCAG
1 AGATCAGATAATTGTGGCATAGCCACCAG
75360485 GATGCTTCCT
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 74 0.94
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
Found at i:75360617 original size:26 final size:27
Alignment explanation
Indices: 75360588--75360663 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
75360578 CAAAATTAAC
*
75360588 CCTAGGGGTATAATGGTAATTTT-ACA
1 CCTAGGGGTATAATAGTAATTTTCACA
* *
75360614 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAATAGTAATTTT-CACA
* *
75360642 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAATAGTAATTT
75360664 AGCTACTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.50
28 21 0.50
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.36
Consensus pattern (27 bp):
CCTAGGGGTATAATAGTAATTTTCACA
Found at i:75360652 original size:28 final size:26
Alignment explanation
Indices: 75360590--75360663 Score: 85
Period size: 28 Copynumber: 2.8 Consensus size: 26
75360580 AAATTAACCC
* *
75360590 TAGGGGTATAATGGTAATTTTACACC
1 TAGGGGTATAATAGTAATTTTACACA
* *
75360616 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAATAGTAATTTT--ACACA
*
75360644 TAGGGGTATTATAGTAATTT
1 TAGGGGTATAATAGTAATTT
75360664 AGCTACTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
26 19 0.47
28 21 0.52
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.36
Consensus pattern (26 bp):
TAGGGGTATAATAGTAATTTTACACA
Found at i:75362111 original size:26 final size:26
Alignment explanation
Indices: 75362080--75362187 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
75362070 TGAAATGCCC
75362080 ATCATGGAACATTTACCTTAA-CCATT
1 ATCATGGAACATTTACC-TAACCCATT
*
75362106 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75362132 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75362158 ATCATAGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75362184 ATCA
1 ATCA
75362188 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 3 0.04
26 74 0.96
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:75362650 original size:21 final size:21
Alignment explanation
Indices: 75362624--75362664 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
75362614 TGGACCAGGT
75362624 CAGTATATGTATACGTGTAAG
1 CAGTATATGTATACGTGTAAG
*
75362645 CAGTATATGTATATGTGTAA
1 CAGTATATGTATACGTGTAA
75362665 TACCGTAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (21 bp):
CAGTATATGTATACGTGTAAG
Found at i:75363233 original size:5 final size:6
Alignment explanation
Indices: 75363158--75363237 Score: 54
Period size: 6 Copynumber: 12.0 Consensus size: 6
75363148 TAAACAAAAT
*
75363158 AAAGAA AAA-AA GAATAGAA AAAGAA ATAAGAA GAATGAA TAAAGAAGA
1 AAAGAA AAAGAA -AA-AGAA AAAGAA A-AAGAA -AAAGAA -AAAG-A-A
*
75363206 AAAGGGAG AAAGAA AAAGAA AAAGAA AAAGAA
1 AAA--GAA AAAGAA AAAGAA AAAGAA AAAGAA
75363238 GGAGAAAATT
Statistics
Matches: 60, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
5 2 0.03
6 30 0.50
7 15 0.25
8 10 0.17
9 2 0.03
10 1 0.02
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (6 bp):
AAAGAA
Done.