Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 229 of 343
Found at i:75364423 original size:21 final size:21
Alignment explanation
Indices: 75364373--75364429 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
75364363 AGTGTACGGC
*
75364373 CTGTAGCCGTCCTGTATAAGG
1 CTGTAGCCTTCCTGTATAAGG
75364394 CTGTAGCCTTCCTGTATAAGG
1 CTGTAGCCTTCCTGTATAAGG
* *
75364415 CTTTAGCCTTTCTGT
1 CTGTAGCCTTCCTGT
75364430 GATACTTATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.37
Consensus pattern (21 bp):
CTGTAGCCTTCCTGTATAAGG
Found at i:75364517 original size:22 final size:22
Alignment explanation
Indices: 75364492--75364541 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
75364482 TACGGCCTTT
75364492 AGCCGTCATGTCT-ACGACGTTG
1 AGCCGTCATGTCTAACG-CGTTG
* *
75364514 AGCCGTCCTGTCTAACGTGTTG
1 AGCCGTCATGTCTAACGCGTTG
75364536 AGCCGT
1 AGCCGT
75364542 TTTGTTGACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.16, C:0.28, G:0.28, T:0.28
Consensus pattern (22 bp):
AGCCGTCATGTCTAACGCGTTG
Found at i:75372564 original size:19 final size:19
Alignment explanation
Indices: 75372542--75372609 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 19
75372532 AAGTGAAGGA
75372542 TTAAATAAGCAATTAATCC
1 TTAAATAAGCAATTAATCC
* ***
75372561 TTAAATAA-CAAAAAGTGAAGGA
1 TTAAATAAGC---AA-TTAATCC
75372583 TTAAATAAGCAATTAATCC
1 TTAAATAAGCAATTAATCC
75372602 TTAAATAA
1 TTAAATAA
75372610 CAAGTGTGCG
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
18 1 0.03
19 19 0.53
20 2 0.06
21 2 0.06
22 11 0.31
23 1 0.03
ACGTcount: A:0.53, C:0.10, G:0.09, T:0.28
Consensus pattern (19 bp):
TTAAATAAGCAATTAATCC
Found at i:75372579 original size:41 final size:41
Alignment explanation
Indices: 75372529--75372612 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
75372519 TTGATTAAAG
75372529 AAAAAGTGAAGGATTAAATAAGCAATTAATCCTTAAATAAC
1 AAAAAGTGAAGGATTAAATAAGCAATTAATCCTTAAATAAC
75372570 AAAAAGTGAAGGATTAAATAAGCAATTAATCCTTAAATAAC
1 AAAAAGTGAAGGATTAAATAAGCAATTAATCCTTAAATAAC
75372611 AA
1 AA
75372613 GTGTGCGGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.55, C:0.10, G:0.12, T:0.24
Consensus pattern (41 bp):
AAAAAGTGAAGGATTAAATAAGCAATTAATCCTTAAATAAC
Found at i:75379583 original size:24 final size:24
Alignment explanation
Indices: 75379555--75379600 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
75379545 TTTGACACTC
75379555 TAATCAAAAACTCAGTAGACTCTT
1 TAATCAAAAACTCAGTAGACTCTT
*
75379579 TAATCACAAACTCAGTAGACTC
1 TAATCAAAAACTCAGTAGACTC
75379601 AACAGGTAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (24 bp):
TAATCAAAAACTCAGTAGACTCTT
Found at i:75388049 original size:26 final size:27
Alignment explanation
Indices: 75388020--75388073 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
75388010 TTGAGTTAAT
*
75388020 AAATTCTC-TGAGGTTTTCTTTT-CAAG
1 AAATTCTCTTGA-GTTTTATTTTACAAG
*
75388046 AAATTTTCTTGAGTTTTATTTTACAAG
1 AAATTCTCTTGAGTTTTATTTTACAAG
75388073 A
1 A
75388074 GTTTTAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.48
Consensus pattern (27 bp):
AAATTCTCTTGAGTTTTATTTTACAAG
Found at i:75389280 original size:39 final size:39
Alignment explanation
Indices: 75389225--75389303 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
75389215 AATATTGTTG
* *
75389225 TTAGGTCAAAGTTACTGGTAATTGCTGCTCTGTATGATC
1 TTAGGTCAAAGCTACTGGTAATTGCTGCTCTATATGATC
75389264 TTAGGTCAAAGCTACTGGTAATTGCTGCTCTATATGATC
1 TTAGGTCAAAGCTACTGGTAATTGCTGCTCTATATGATC
75389303 T
1 T
75389304 AACCCTTGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (39 bp):
TTAGGTCAAAGCTACTGGTAATTGCTGCTCTATATGATC
Found at i:75393322 original size:55 final size:54
Alignment explanation
Indices: 75393206--75393394 Score: 200
Period size: 55 Copynumber: 3.5 Consensus size: 54
75393196 GTTTAAGGAT
* * * *
75393206 ACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTCTACAAGGCAAAGAA
1 ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAAGAA
* * * * *
75393260 ATCATGTAAGACCATGTCAAGACATGGCATTGATAAATTACTATAAGGCAAAGAG
1 ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGCAAAGAA
* * * * * *
75393315 CCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGCAAGGAT
1 ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAAGAA
* * *
75393368 ACCACGTAAGACCATGTCAAAACATGG
1 ACCATGTAAGACCATGCCAAGACATGG
75393395 AACTTGTAAG
Statistics
Matches: 110, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 33 0.30
54 33 0.30
55 44 0.40
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.19
Consensus pattern (54 bp):
ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAAGAA
Found at i:75396119 original size:19 final size:20
Alignment explanation
Indices: 75396076--75396119 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
75396066 TAAAAACAAA
*
75396076 ATAATTAGGATTAATTAATC
1 ATAATTAGGATTAATTAAAC
* *
75396096 CTAATTA-GTTTAATTAAAC
1 ATAATTAGGATTAATTAAAC
75396115 ATAAT
1 ATAAT
75396120 GAAGAAATAC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (20 bp):
ATAATTAGGATTAATTAAAC
Found at i:75405171 original size:27 final size:27
Alignment explanation
Indices: 75405153--75405206 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
75405143 ATAAGTATGT
*
75405153 AAATGATTGATAATATTATGGCATGAA
1 AAATGATTGATAATATTATAGCATGAA
*
75405180 AAATGATTGATAATATTATGGCATGAA
1 AAATGATTGATAATATTATAGCATGAA
75405207 TGATGTATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.04, G:0.19, T:0.33
Consensus pattern (27 bp):
AAATGATTGATAATATTATAGCATGAA
Found at i:75406785 original size:133 final size:133
Alignment explanation
Indices: 75406543--75406816 Score: 541
Period size: 133 Copynumber: 2.1 Consensus size: 133
75406533 CATGATTGGC
75406543 CATT-CCAATGGCTAATCATTACCAAACATTTCCATACCACTTAATAACCATATCATAAGACCAT
1 CATTACCAATGGCTAATCATTACCAAACATTTCCATACCACTTAATAACCATATCATAAGACCAT
75406607 ATATACAAATTGACCATAATGTTATACTCAAAATATACAAGCCATTTTCGCATGGCTATACGAAT
66 ATATACAAATTGACCATAATGTTATACTCAAAATATACAAGCCATTTTCGCATGGCTATACGAAT
75406672 ATA
131 ATA
75406675 CATTACCAATGGCTAATCATTACCAAACATTTCCATACCACTTAATAACCATATCATAAGACCAT
1 CATTACCAATGGCTAATCATTACCAAACATTTCCATACCACTTAATAACCATATCATAAGACCAT
75406740 ATATACAAATTGACCATAATGTTATACTCAAAATATACAAGCCATTTTCGCATGGCTATACGAAT
66 ATATACAAATTGACCATAATGTTATACTCAAAATATACAAGCCATTTTCGCATGGCTATACGAAT
75406805 ATA
131 ATA
75406808 CATTACCAA
1 CATTACCAA
75406817 AAGATACTTA
Statistics
Matches: 141, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
132 4 0.03
133 137 0.97
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (133 bp):
CATTACCAATGGCTAATCATTACCAAACATTTCCATACCACTTAATAACCATATCATAAGACCAT
ATATACAAATTGACCATAATGTTATACTCAAAATATACAAGCCATTTTCGCATGGCTATACGAAT
ATA
Found at i:75407367 original size:40 final size:40
Alignment explanation
Indices: 75407298--75407475 Score: 306
Period size: 40 Copynumber: 4.5 Consensus size: 40
75407288 AACCCAAGTA
* *
75407298 CCTTCGGGAATTAG-CCGGATATAGCAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
75407337 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
*
75407377 CCTTCGGGACTTAGCCCGGTTATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
75407417 CCTTCGGGACTTAGCCC-GATTATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGA-TATAGTAACTAGCACAATTG
75407457 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
75407476 TTATCATCCG
Statistics
Matches: 132, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
39 14 0.11
40 117 0.89
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
Found at i:75409004 original size:13 final size:13
Alignment explanation
Indices: 75408986--75409011 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75408976 ATTTTTATTT
75408986 TTAACATAAAATA
1 TTAACATAAAATA
75408999 TTAACATAAAATA
1 TTAACATAAAATA
75409012 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:75414134 original size:40 final size:40
Alignment explanation
Indices: 75414086--75414291 Score: 324
Period size: 40 Copynumber: 5.2 Consensus size: 40
75414076 GGACTAAGAT
* *
75414086 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
75414126 TCGAAGGCATTTGTGCGAGTTAATATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
75414166 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
75414206 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
75414246 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GACTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
75414285 CCGAAGG
1 CCGAAGG
75414292 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 14 0.09
40 141 0.91
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:75419134 original size:46 final size:46
Alignment explanation
Indices: 75419084--75419259 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
75419074 TGATTGAGCA
75419084 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75419130 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75419175 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75419223 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75419260 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75419240 original size:93 final size:93
Alignment explanation
Indices: 75419081--75419252 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
75419071 GGATGATTGA
*
75419081 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
75419146 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75419174 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
75419238 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
75419253 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75424305 original size:16 final size:16
Alignment explanation
Indices: 75424284--75424317 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
75424274 GATTACCATT
75424284 GACTCCAGGAAAGAAA
1 GACTCCAGGAAAGAAA
75424300 GACTCCAGGAAAGAAA
1 GACTCCAGGAAAGAAA
75424316 GA
1 GA
75424318 TGCCATCTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.18, G:0.26, T:0.06
Consensus pattern (16 bp):
GACTCCAGGAAAGAAA
Found at i:75432495 original size:40 final size:40
Alignment explanation
Indices: 75432435--75432597 Score: 224
Period size: 40 Copynumber: 4.1 Consensus size: 40
75432425 CGGATGATAA
*
75432435 CCGGACTAAGATC-CGAAGGCATTTGTGCT-AGTGACTATAT
1 CCGGGCTAAG-TCTCGAAGGCATTTGTG-TGAGTGACTATAT
*
75432475 CCGGGCTAAGTCTCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCTCGAAGGCATTTGTGTGAGTGACTATAT
* *
75432515 CCGGGCTAAGTCTCAAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCTCGAAGGCATTTGTGTGAGTGACTATAT
* *
75432555 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATAT
1 CCGGGCTAAGTCTCGAAGGCATTTGTGTGAG-TGACTATAT
75432595 CCG
1 CCG
75432598 ACTAAATCCC
Statistics
Matches: 113, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
39 3 0.03
40 109 0.96
41 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGGGCTAAGTCTCGAAGGCATTTGTGTGAGTGACTATAT
Found at i:75437333 original size:47 final size:47
Alignment explanation
Indices: 75437274--75437573 Score: 438
Period size: 47 Copynumber: 6.4 Consensus size: 47
75437264 GATGTACAAG
* *
75437274 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
75437321 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
75437368 GTGTATATATGTGATAAGGCTTAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * *
75437415 GTGTAGATATGAGATAAGACCTAATGGCCAAGGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * * *
75437462 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
75437509 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
75437556 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
75437574 TCCCGAAGGG
Statistics
Matches: 229, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 229 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:75438929 original size:46 final size:46
Alignment explanation
Indices: 75438879--75439146 Score: 266
Period size: 46 Copynumber: 5.8 Consensus size: 46
75438869 TGGTTGAGCA
75438879 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75438925 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75438970 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
75439018 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75439063 CATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75439110 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75439147 GCGGGTTACA
Statistics
Matches: 181, Mismatches: 22, Indels: 38
0.75 0.09 0.16
Matches are distributed among these distances:
42 4 0.02
43 10 0.06
45 25 0.14
46 76 0.42
47 50 0.28
48 3 0.02
49 4 0.02
50 7 0.04
51 2 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75439035 original size:93 final size:92
Alignment explanation
Indices: 75438876--75439139 Score: 483
Period size: 93 Copynumber: 2.8 Consensus size: 92
75438866 GGATGGTTGA
* *
75438876 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
75438941 TGAGTCCGAGTTCGTGAGATGTAACTAG
65 TGAGTCCGAGTTCGTGAGATGTAACTAG
75438969 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTC-GAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
75439034 TGAGTCCGAGTTCGTGAGATGTAACTAG
65 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75439062 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGTT
75439127 GAGTCCGAGTTCG
66 GAGTCCGAGTTCG
75439140 CTTATGGGCG
Statistics
Matches: 167, Mismatches: 3, Indels: 3
0.97 0.02 0.02
Matches are distributed among these distances:
92 53 0.32
93 114 0.68
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75446590 original size:46 final size:46
Alignment explanation
Indices: 75446540--75446715 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
75446530 TGGTTGAGCA
75446540 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75446586 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
75446631 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75446679 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75446716 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 63 0.56
47 29 0.26
48 3 0.03
50 5 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75446696 original size:93 final size:93
Alignment explanation
Indices: 75446537--75446708 Score: 326
Period size: 93 Copynumber: 1.8 Consensus size: 93
75446527 GGATGGTTGA
*
75446537 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
75446602 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75446630 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
75446695 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75446709 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75449918 original size:40 final size:40
Alignment explanation
Indices: 75449863--75450253 Score: 633
Period size: 40 Copynumber: 9.8 Consensus size: 40
75449853 CAGTATGTTA
75449863 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
75449903 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
** *
75449943 TATTTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
75449983 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
75450023 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
75450063 TATCCGGACTAGGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
75450103 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
75450143 TACCCGGGATAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
75450183 TA-CTGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
75450222 TATCCGGGCTAAG-CCCCAAAAGCATTCGTGCT
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
75450254 TGGATAAAAT
Statistics
Matches: 326, Mismatches: 24, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 52 0.16
40 274 0.84
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
Found at i:75454253 original size:47 final size:47
Alignment explanation
Indices: 75454194--75454493 Score: 442
Period size: 47 Copynumber: 6.4 Consensus size: 47
75454184 GATGTACAAG
* *
75454194 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
75454241 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
75454288 GTGTATATATGTGATAAGG-CTGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAA
* * *
75454335 GTGTAGATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * *
75454382 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
75454429 GTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAA
*
75454476 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
75454494 TCCCGAAGGG
Statistics
Matches: 232, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
46 3 0.01
47 227 0.98
48 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:75454474 original size:22 final size:22
Alignment explanation
Indices: 75454404--75454474 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
75454394 GATAAGACCT
75454404 AATGGCCAATGTGATGGATGTG
1 AATGGCCAATGTGATGGATGTG
*** * *
75454426 AAGGTGTATATATGTGAT-AAGGCTG
1 AA--TGGCCA-ATGTGATGGATG-TG
75454451 AATGGCCAATGTGATGGATGTG
1 AATGGCCAATGTGATGGATGTG
75454473 AA
1 AA
75454475 AGTGTATAAA
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
22 13 0.38
23 5 0.15
24 5 0.15
25 11 0.32
ACGTcount: A:0.31, C:0.07, G:0.34, T:0.28
Consensus pattern (22 bp):
AATGGCCAATGTGATGGATGTG
Found at i:75466097 original size:11 final size:11
Alignment explanation
Indices: 75466083--75466123 Score: 82
Period size: 11 Copynumber: 3.7 Consensus size: 11
75466073 AGTTAATAAA
75466083 TCACTAATTTG
1 TCACTAATTTG
75466094 TCACTAATTTG
1 TCACTAATTTG
75466105 TCACTAATTTG
1 TCACTAATTTG
75466116 TCACTAAT
1 TCACTAAT
75466124 CATGCCTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.44
Consensus pattern (11 bp):
TCACTAATTTG
Found at i:75467226 original size:23 final size:23
Alignment explanation
Indices: 75467196--75467242 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
75467186 ATTAGCTTAG
75467196 TTAGTAATTAACAAATCATTTGA
1 TTAGTAATTAACAAATCATTTGA
75467219 TTAGTAATTAACAAATCATTTGA
1 TTAGTAATTAACAAATCATTTGA
75467242 T
1 T
75467243 CATCATTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (23 bp):
TTAGTAATTAACAAATCATTTGA
Found at i:75472883 original size:179 final size:180
Alignment explanation
Indices: 75472583--75472945 Score: 665
Period size: 179 Copynumber: 2.0 Consensus size: 180
75472573 ATTCCACTTC
75472583 TTGATTCAGAGGTAAACCCGGTAGCTCCTCAGGGAAGATGTCCTAAAAATCCCTTACAGTTCTGA
1 TTGATTCAGAGGTAAACCCGGTAGCTCCTCAGGGAAGATGTCCTAAAAATCCCTTACAGTTCTGA
* **
75472648 TGTCCTTTGCAGTAAAGTCCCCAGAAATGGAAATGCTAATATAGGCCAAGAACGCCTCACATCCC
66 TGTCCTTTACAGTAAAGTCCCCAGAAACAGAAATGCTAATATAGGCCAAGAACGCCTCACATCCC
75472713 TT-AACCAGTTTCTCAGCCACTAGTGCAAAGATCACATTAGCCAAATAAT
131 TTAAACCAGTTTCTCAGCCACTAGTGCAAAGATCACATTAGCCAAATAAT
75472762 TTGATTCAGAGGTAAACCCGGTAGCTCCTCAGGGAAGATGTCCTAAAAATCCCTTACAGTTCTGA
1 TTGATTCAGAGGTAAACCCGGTAGCTCCTCAGGGAAGATGTCCTAAAAATCCCTTACAGTTCTGA
*
75472827 TGTCCTTTACAGTAGAGTCCCCAGAAACAGAAATGCTAATATAGGCCAAGAACGCCTCACATCCC
66 TGTCCTTTACAGTAAAGTCCCCAGAAACAGAAATGCTAATATAGGCCAAGAACGCCTCACATCCC
75472892 TTACAAACCAGTTTCTCAGCCACTAGTGCAAAGATCACATTAGCCAAATAAT
131 TT--AAACCAGTTTCTCAGCCACTAGTGCAAAGATCACATTAGCCAAATAAT
75472944 TT
1 TT
75472946 CGATGTTCTC
Statistics
Matches: 177, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
179 128 0.72
182 49 0.28
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (180 bp):
TTGATTCAGAGGTAAACCCGGTAGCTCCTCAGGGAAGATGTCCTAAAAATCCCTTACAGTTCTGA
TGTCCTTTACAGTAAAGTCCCCAGAAACAGAAATGCTAATATAGGCCAAGAACGCCTCACATCCC
TTAAACCAGTTTCTCAGCCACTAGTGCAAAGATCACATTAGCCAAATAAT
Found at i:75474735 original size:15 final size:15
Alignment explanation
Indices: 75474717--75474745 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
75474707 AGTTTGATGA
75474717 TTATTAGCTAAAATT
1 TTATTAGCTAAAATT
75474732 TTATTAGCTAAAAT
1 TTATTAGCTAAAAT
75474746 GATTATGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (15 bp):
TTATTAGCTAAAATT
Found at i:75478527 original size:38 final size:39
Alignment explanation
Indices: 75478480--75478553 Score: 89
Period size: 38 Copynumber: 1.9 Consensus size: 39
75478470 AACATAATAT
* **
75478480 AATATTAATT-AATAAAATTATAAATCTATAAAATCCTTG
1 AATATTAATTGAAT-AAATTAAAAATAAATAAAATCCTTG
*
75478519 AATA-TAATTGGATAAATTAAAAATAAATAAAATCC
1 AATATTAATTGAATAAATTAAAAATAAATAAAATCC
75478554 AAGTCTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
38 24 0.80
39 6 0.20
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.34
Consensus pattern (39 bp):
AATATTAATTGAATAAATTAAAAATAAATAAAATCCTTG
Found at i:75478857 original size:24 final size:24
Alignment explanation
Indices: 75478815--75478875 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
75478805 ATTATCACTT
*
75478815 AATTAATGTT-ATAATTATATATC
1 AATTAATATTAATAATTATATATC
75478838 AATTAATATTAATAATTATATATC
1 AATTAATATTAATAATTATATATC
*
75478862 AATTAATACTAATA
1 AATTAATATTAATA
75478876 TTTAGCATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
23 9 0.26
24 26 0.74
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (24 bp):
AATTAATATTAATAATTATATATC
Found at i:75482317 original size:30 final size:30
Alignment explanation
Indices: 75482271--75482327 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
75482261 ATCCCGAGCC
75482271 TAGGGGCAAAAATGTAAATATGCAAAAGTT
1 TAGGGGCAAAAATGTAAATATGCAAAAGTT
* * * *
75482301 TAGGGGTAAAATTGTAATTTTGCAAAA
1 TAGGGGCAAAAATGTAAATATGCAAAA
75482328 ATTTGAGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAAATATGCAAAAGTT
Found at i:75482799 original size:46 final size:46
Alignment explanation
Indices: 75482749--75482924 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75482739 TGGTTGAGCA
75482749 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75482795 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75482840 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75482888 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75482925 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75482905 original size:93 final size:93
Alignment explanation
Indices: 75482746--75482917 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75482736 GGATGGTTGA
* *
75482746 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75482811 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75482839 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75482904 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75482918 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75490361 original size:46 final size:46
Alignment explanation
Indices: 75490311--75490486 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75490301 TGGTTGAGCA
75490311 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75490357 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75490402 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75490450 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75490487 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75490467 original size:93 final size:93
Alignment explanation
Indices: 75490308--75490479 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75490298 GGATGGTTGA
* *
75490308 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75490373 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75490401 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75490466 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75490480 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75492583 original size:11 final size:11
Alignment explanation
Indices: 75492567--75492592 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
75492557 GATATTAATT
75492567 ATATTATAAAA
1 ATATTATAAAA
75492578 ATATTATAAAA
1 ATATTATAAAA
75492589 ATAT
1 ATAT
75492593 AAAGGTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
ATATTATAAAA
Found at i:75500183 original size:7 final size:7
Alignment explanation
Indices: 75500171--75500197 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
75500161 TGGCAACTTT
75500171 CAAACTG
1 CAAACTG
75500178 CAAACTG
1 CAAACTG
75500185 CAAACTG
1 CAAACTG
75500192 CAAACT
1 CAAACT
75500198 CAACTAAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.30, G:0.11, T:0.15
Consensus pattern (7 bp):
CAAACTG
Found at i:75503586 original size:29 final size:27
Alignment explanation
Indices: 75503535--75503590 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 27
75503525 AAAGTATACT
* *
75503535 CTTTTTTTTTTCATTTTGTTACCTAAA
1 CTTTTTTTTTTCATATTGATACCTAAA
75503562 CTTTTTTTTTGTCCATATTGATACCTAAA
1 CTTTTTTTTT-T-CATATTGATACCTAAA
75503591 GTATGCATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 10 0.40
28 1 0.04
29 14 0.56
ACGTcount: A:0.21, C:0.16, G:0.05, T:0.57
Consensus pattern (27 bp):
CTTTTTTTTTTCATATTGATACCTAAA
Found at i:75504242 original size:20 final size:20
Alignment explanation
Indices: 75504214--75504284 Score: 99
Period size: 20 Copynumber: 3.5 Consensus size: 20
75504204 TTCTTTTATT
75504214 TTATGTTTCATATTTAATTA
1 TTATGTTTCATATTTAATTA
* *
75504234 TTATTTTTCATTATTTTATT-
1 TTATGTTTCA-TATTTAATTA
75504254 TTATGTTTCATATTTAATTA
1 TTATGTTTCATATTTAATTA
*
75504274 TTATTTTTCAT
1 TTATGTTTCAT
75504285 TCTTCTTTCA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
19 8 0.18
20 28 0.64
21 8 0.18
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (20 bp):
TTATGTTTCATATTTAATTA
Found at i:75504262 original size:40 final size:40
Alignment explanation
Indices: 75504207--75504285 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
75504197 AGGAAGTTTC
75504207 TTTTATTTTATGTTTCATATTTAATTATTATTTTTCATTA
1 TTTTATTTTATGTTTCATATTTAATTATTATTTTTCATTA
75504247 TTTTATTTTATGTTTCATATTTAATTATTATTTTTCATT
1 TTTTATTTTATGTTTCATATTTAATTATTATTTTTCATT
75504286 CTTCTTTCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (40 bp):
TTTTATTTTATGTTTCATATTTAATTATTATTTTTCATTA
Found at i:75507375 original size:10 final size:10
Alignment explanation
Indices: 75507360--75507386 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
75507350 GCAACCTATT
75507360 AGCCAATATA
1 AGCCAATATA
75507370 AGCCAATATA
1 AGCCAATATA
75507380 AGCCAAT
1 AGCCAAT
75507387 TTATATGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.48, C:0.22, G:0.11, T:0.19
Consensus pattern (10 bp):
AGCCAATATA
Found at i:75508561 original size:20 final size:20
Alignment explanation
Indices: 75508536--75508573 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
75508526 GTCACATATA
75508536 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
75508556 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
75508574 TAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:75508700 original size:25 final size:25
Alignment explanation
Indices: 75508672--75508720 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
75508662 CTAGAGAACC
*
75508672 AATCACATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
75508697 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
75508721 AATAATAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:75513087 original size:37 final size:37
Alignment explanation
Indices: 75513013--75513087 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
75513003 TCACTCATGT
* ** * *
75513013 TCACCCATGTTCATCTTTGTCTTTGTTTTATACGGAA
1 TCACCCATGTTCATCTTGGTCTTTACTTTACAAGGAA
* *
75513050 TCACCCCTGTTCATCTTGGTCTTTACTTTGCAAGGAA
1 TCACCCATGTTCATCTTGGTCTTTACTTTACAAGGAA
75513087 T
1 T
75513088 TCTCTAAAGG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.43
Consensus pattern (37 bp):
TCACCCATGTTCATCTTGGTCTTTACTTTACAAGGAA
Found at i:75514706 original size:46 final size:46
Alignment explanation
Indices: 75514656--75514831 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
75514646 TGTTTGGGCA
75514656 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75514702 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
75514747 CATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75514795 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75514832 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75514811 original size:93 final size:93
Alignment explanation
Indices: 75514652--75514824 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
75514642 AGGATGTTTG
* * * * *
75514652 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTCATGGATGCGAACGCCCGAACTCATTGAG
75514717 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75514745 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTCATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTCATGGATGCGAACGCCCGAACTCATTGAG
75514810 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
75514825 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTCATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75525028 original size:12 final size:11
Alignment explanation
Indices: 75524984--75525037 Score: 54
Period size: 12 Copynumber: 4.6 Consensus size: 11
75524974 TATCTAATAT
75524984 TTGAAATGGAAA
1 TTGAAAT-GAAA
* *
75524996 ATGATATGAAA
1 TTGAAATGAAA
*
75525007 TTGAAGTGAAA
1 TTGAAATGAAA
75525018 TGTGAAATGAAA
1 T-TGAAATGAAA
75525030 TATGAAAT
1 T-TGAAAT
75525038 TGTGTAATGA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
11 13 0.38
12 21 0.62
ACGTcount: A:0.50, C:0.00, G:0.22, T:0.28
Consensus pattern (11 bp):
TTGAAATGAAA
Found at i:75527305 original size:45 final size:45
Alignment explanation
Indices: 75527241--75527330 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
75527231 TTGATCCGTC
*
75527241 AATTCATATACGGGGGTGCCCATTAGGGCACAGAACCGGGAAGCA
1 AATTCATATACGGGGGTGCCCATTAGGGCAAAGAACCGGGAAGCA
* *
75527286 AATTCATATACGGGGGTGCCCATTGGGGCAAATAACCGGGAAGCA
1 AATTCATATACGGGGGTGCCCATTAGGGCAAAGAACCGGGAAGCA
75527331 TACTCTCGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.21, G:0.31, T:0.17
Consensus pattern (45 bp):
AATTCATATACGGGGGTGCCCATTAGGGCAAAGAACCGGGAAGCA
Found at i:75527485 original size:24 final size:23
Alignment explanation
Indices: 75527424--75527513 Score: 69
Period size: 23 Copynumber: 3.8 Consensus size: 23
75527414 TATATAATGG
*
75527424 GAAGCTTATAAGAGCCATAATCGG
1 GAAGCTTATAAGAGCCAT-ATCGA
* *
75527448 GAAG-TTCACAAAGAACCATATCGA
1 GAAGCTT-A-TAAGAGCCATATCGA
75527472 GAAGCTTATGAAGAGCC-TATC-A
1 GAAGCTTAT-AAGAGCCATATCGA
*
75527494 GGAAGCTTACAAAGAGCCAT
1 -GAAGCTTA-TAAGAGCCAT
75527514 GTAACGGGAA
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
22 1 0.02
23 21 0.40
24 21 0.40
25 10 0.19
ACGTcount: A:0.40, C:0.19, G:0.22, T:0.19
Consensus pattern (23 bp):
GAAGCTTATAAGAGCCATATCGA
Found at i:75527525 original size:49 final size:48
Alignment explanation
Indices: 75527417--75527526 Score: 118
Period size: 47 Copynumber: 2.3 Consensus size: 48
75527407 TCTGGGGTAT
* *
75527417 ATAATGGGAAGCTTATAAGAGCCATAATCGGGAAGTTCACAAAGAACC
1 ATAACGGGAAGCTTATAAGAGCCATAATCAGGAAGTTCACAAAGAACC
* * *
75527465 ATATCGAGAAGCTTATGAAGAGCC-T-ATCAGGAAGCTT-ACAAAGAGCC
1 ATAACGGGAAGCTTAT-AAGAGCCATAATCAGGAAG-TTCACAAAGAACC
75527512 ATGTAACGGGAAGCT
1 A--TAACGGGAAGCT
75527527 CTAGATAGCC
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
47 18 0.35
48 16 0.31
49 17 0.33
ACGTcount: A:0.39, C:0.17, G:0.25, T:0.19
Consensus pattern (48 bp):
ATAACGGGAAGCTTATAAGAGCCATAATCAGGAAGTTCACAAAGAACC
Found at i:75529440 original size:22 final size:22
Alignment explanation
Indices: 75529415--75529483 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
75529405 TGGTTGTATG
75529415 TTTGTATGGATTGAATAAGTTC
1 TTTGTATGGATTGAATAAGTTC
* * *
75529437 TTTGTA--G-TTTAAT-TGTGTG
1 TTTGTATGGATTGAATAAGT-TC
75529456 TTTGTATGGATTGAATAAGTTC
1 TTTGTATGGATTGAATAAGTTC
75529478 TTTGTA
1 TTTGTA
75529484 GTTTAATTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
18 2 0.06
19 12 0.33
20 1 0.03
21 1 0.03
22 18 0.50
23 2 0.06
ACGTcount: A:0.23, C:0.03, G:0.23, T:0.51
Consensus pattern (22 bp):
TTTGTATGGATTGAATAAGTTC
Found at i:75529470 original size:41 final size:41
Alignment explanation
Indices: 75529408--75529495 Score: 167
Period size: 41 Copynumber: 2.1 Consensus size: 41
75529398 GGCATATTGG
*
75529408 TTGTATGTTTGTATGGATTGAATAAGTTCTTTGTAGTTTAA
1 TTGTGTGTTTGTATGGATTGAATAAGTTCTTTGTAGTTTAA
75529449 TTGTGTGTTTGTATGGATTGAATAAGTTCTTTGTAGTTTAA
1 TTGTGTGTTTGTATGGATTGAATAAGTTCTTTGTAGTTTAA
75529490 TTGTGT
1 TTGTGT
75529496 ACCTATATGT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.22, C:0.02, G:0.24, T:0.52
Consensus pattern (41 bp):
TTGTGTGTTTGTATGGATTGAATAAGTTCTTTGTAGTTTAA
Found at i:75529683 original size:18 final size:18
Alignment explanation
Indices: 75529657--75529692 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
75529647 GCCAAAACAG
* *
75529657 TATCCATACTTACTATAA
1 TATCAATACTTACCATAA
75529675 TATCAATACTTACCATAA
1 TATCAATACTTACCATAA
75529693 AAGTATCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.22, G:0.00, T:0.36
Consensus pattern (18 bp):
TATCAATACTTACCATAA
Found at i:75531381 original size:25 final size:25
Alignment explanation
Indices: 75531321--75531423 Score: 113
Period size: 25 Copynumber: 4.2 Consensus size: 25
75531311 CAAAACTCTT
*
75531321 ATGAGCTTCTCGTTATAT-AGCTCGC
1 ATGAGCTTCCCGTTAT-TCAGCTCGC
*
75531346 A-GAGCTTCCCGTTATTCAGCTCAC
1 ATGAGCTTCCCGTTATTCAGCTCGC
* *
75531370 ATGAGCTTCCCGTTATTCAGCACGG
1 ATGAGCTTCCCGTTATTCAGCTCGC
* * *
75531395 AGGAGCTTCCCGTT-TGCAGCTCGT
1 ATGAGCTTCCCGTTATTCAGCTCGC
75531419 ATGAG
1 ATGAG
75531424 AATACATGAA
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
23 1 0.02
24 31 0.47
25 34 0.52
ACGTcount: A:0.19, C:0.27, G:0.23, T:0.30
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATTCAGCTCGC
Found at i:75531415 original size:49 final size:49
Alignment explanation
Indices: 75531321--75531416 Score: 124
Period size: 49 Copynumber: 2.0 Consensus size: 49
75531311 CAAAACTCTT
* * *
75531321 ATGAGCTTCTCGTTATATAGCTCGCAGAGCTTCCCGTTATTCAGCTCAC
1 ATGAGCTTCCCGTTATATAGCACGCAGAGCTTCCCGTTATGCAGCTCAC
*
75531370 ATGAGCTTCCCGTTAT-TCAGCACGGAGGAGCTTCCCGTT-TGCAGCTC
1 ATGAGCTTCCCGTTATAT-AGCACGCA-GAGCTTCCCGTTATGCAGCTC
75531417 GTATGAGAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
48 1 0.02
49 28 0.68
50 12 0.29
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.30
Consensus pattern (49 bp):
ATGAGCTTCCCGTTATATAGCACGCAGAGCTTCCCGTTATGCAGCTCAC
Found at i:75552407 original size:87 final size:87
Alignment explanation
Indices: 75552272--75552446 Score: 305
Period size: 87 Copynumber: 2.0 Consensus size: 87
75552262 CCACAGAAGA
* *
75552272 TAGGACAGCGTTAAAATCTCCTATGATAAGCAAAGGAATGGGCTGGGCTAGGGAGACAGATTTTA
1 TAGGACAGCGTTAAAATCTCCCATGATAAGCAAAGGAATGGGCTGGGCTAGAGAGACAGATTTTA
75552337 ACCCTTCCCAAAGAAGCTTGCG
66 ACCCTTCCCAAAGAAGCTTGCG
* * *
75552359 TAGGATAGCGTTAAAATCTCCCATGATAAGCCAAGGAATGGGCTGGGCTAGAGAGACATATTTTA
1 TAGGACAGCGTTAAAATCTCCCATGATAAGCAAAGGAATGGGCTGGGCTAGAGAGACAGATTTTA
75552424 ACCCTTCCCAAAGAAGCTTGCG
66 ACCCTTCCCAAAGAAGCTTGCG
75552446 T
1 T
75552447 TTCATCCTGC
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 83 1.00
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (87 bp):
TAGGACAGCGTTAAAATCTCCCATGATAAGCAAAGGAATGGGCTGGGCTAGAGAGACAGATTTTA
ACCCTTCCCAAAGAAGCTTGCG
Found at i:75555907 original size:14 final size:13
Alignment explanation
Indices: 75555880--75555904 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75555870 AAATAGTAAA
75555880 AATTTGAGAAAAT
1 AATTTGAGAAAAT
75555893 AATTTGAGAAAA
1 AATTTGAGAAAA
75555905 ATAGTAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (13 bp):
AATTTGAGAAAAT
Found at i:75557056 original size:23 final size:23
Alignment explanation
Indices: 75557030--75557073 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
75557020 TATAATATAT
75557030 TAAA-AATACTAAAAACATTAAAA
1 TAAATAATACTAAAAA-ATTAAAA
* *
75557053 TAAATATTCCTAAAAAATTAA
1 TAAATAATACTAAAAAATTAA
75557074 TTTTTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 9 0.50
24 9 0.50
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (23 bp):
TAAATAATACTAAAAAATTAAAA
Found at i:75557275 original size:21 final size:21
Alignment explanation
Indices: 75557231--75557281 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
75557221 AAATGATACC
75557231 AAAATAG-AGAAAAAAATAAG
1 AAAATAGCAGAAAAAAATAAG
75557251 AAAATAGCAGTAAAACAAA-AA-
1 AAAATAGCAG-AAAA-AAATAAG
75557272 AAAATAGCAG
1 AAAATAGCAG
75557282 CTTTTTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 7 0.25
21 12 0.43
22 6 0.21
23 3 0.11
ACGTcount: A:0.71, C:0.06, G:0.14, T:0.10
Consensus pattern (21 bp):
AAAATAGCAGAAAAAAATAAG
Found at i:75558377 original size:27 final size:26
Alignment explanation
Indices: 75558346--75558403 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
75558336 GAAATCATAA
*
75558346 AAAAAGTATAAAAAATTATTTAAAAA-AT
1 AAAAA-TACAAAAAATTA--TAAAAATAT
*
75558374 AAAAATACAAAAAGTTATAAAAATAT
1 AAAAATACAAAAAATTATAAAAATAT
75558400 AAAA
1 AAAA
75558404 TAATTACAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 6 0.22
26 6 0.22
27 10 0.37
28 5 0.19
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.24
Consensus pattern (26 bp):
AAAAATACAAAAAATTATAAAAATAT
Found at i:75558477 original size:30 final size:32
Alignment explanation
Indices: 75558443--75558510 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 32
75558433 TGGAAATTAT
* * *
75558443 AAAAAATTATT-GAAAGTTATAGAAAA-TACA
1 AAAAAATTATTCGAAAATAATAAAAAATTACA
75558473 AAAAAATTATTCGAAAATAATAAAAAATTACA
1 AAAAAATTATTCGAAAATAATAAAAAATTACA
75558505 AAAAAA
1 AAAAAA
75558511 CTCTATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 11 0.33
31 12 0.36
32 10 0.30
ACGTcount: A:0.66, C:0.04, G:0.06, T:0.24
Consensus pattern (32 bp):
AAAAAATTATTCGAAAATAATAAAAAATTACA
Found at i:75558482 original size:20 final size:21
Alignment explanation
Indices: 75558462--75558502 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75558452 TTGAAAGTTA
75558462 TAGAAAATACA-AAAAAATTAT
1 TAGAAAATA-ATAAAAAATTAT
*
75558483 TCGAAAATAATAAAAAATTA
1 TAGAAAATAATAAAAAATTA
75558503 CAAAAAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (21 bp):
TAGAAAATAATAAAAAATTAT
Found at i:75558836 original size:19 final size:19
Alignment explanation
Indices: 75558809--75558854 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
75558799 TATGTGTTTA
* *
75558809 TAAT-ATTTTGCAA-ATTT
1 TAATAATTTTTCAATATTG
*
75558826 TAATAATTTTTTAATATTG
1 TAATAATTTTTCAATATTG
75558845 TAATAATTTT
1 TAATAATTTT
75558855 CTATAGTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 4 0.17
18 7 0.29
19 13 0.54
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (19 bp):
TAATAATTTTTCAATATTG
Found at i:75559258 original size:17 final size:17
Alignment explanation
Indices: 75559212--75559258 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
75559202 CCTTTAACCA
75559212 ACTTTTAATTTT-ATAT
1 ACTTTTAATTTTAATAT
**
75559228 AAATTT-ATTATTAATAT
1 ACTTTTAATT-TTAATAT
75559245 ACTTTTAATTTTAA
1 ACTTTTAATTTTAA
75559259 GGAATTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
15 3 0.12
16 6 0.25
17 12 0.50
18 3 0.12
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (17 bp):
ACTTTTAATTTTAATAT
Found at i:75559275 original size:32 final size:33
Alignment explanation
Indices: 75559212--75559276 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
75559202 CCTTTAACCA
* *
75559212 ACTTTTAATTTTATATAAATTTATTATTAATAT
1 ACTTTTAATTTTATAGAAATTTATTACTAATAT
*
75559245 ACTTTTAATTTTA-AGGAATTTATTACTAATAT
1 ACTTTTAATTTTATAGAAATTTATTACTAATAT
75559277 CATAATTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.55
33 13 0.45
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (33 bp):
ACTTTTAATTTTATAGAAATTTATTACTAATAT
Found at i:75560318 original size:39 final size:39
Alignment explanation
Indices: 75560275--75560445 Score: 261
Period size: 39 Copynumber: 4.4 Consensus size: 39
75560265 GGTTTTTAAC
* ** *
75560275 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
* * *
75560314 CCGGATAGATTTCTAGCATATAGCCTGCGGATCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
*
75560353 CCGAATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
*
75560392 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
75560431 CCGGATATATTTCCA
1 CCGGATATATTTCCA
75560446 ATCTCATATA
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 118 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:75562642 original size:60 final size:60
Alignment explanation
Indices: 75562576--75562690 Score: 212
Period size: 60 Copynumber: 1.9 Consensus size: 60
75562566 TAAAGGAAAC
* *
75562576 AGTAATACAACCACTACTAGTACAAACATTATTATTAAAGTTATTGACATAAAGTGCAAT
1 AGTAATACAACCACTACTAGTACAAACATTATTATTAAAGCTATTAACATAAAGTGCAAT
75562636 AGTAATACAACCACTACTAGTACAAACATTATTATTAAAGCTATTAACATAAAGT
1 AGTAATACAACCACTACTAGTACAAACATTATTATTAAAGCTATTAACATAAAGT
75562691 AGCTAGGTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.30
Consensus pattern (60 bp):
AGTAATACAACCACTACTAGTACAAACATTATTATTAAAGCTATTAACATAAAGTGCAAT
Found at i:75573675 original size:40 final size:40
Alignment explanation
Indices: 75573617--75573806 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
75573607 CGGATGATAA
*
75573617 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
75573657 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
75573697 CC-GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * *
75573735 CCGGGCTAAGTCCCGAAGGCATTGGTGTGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* * *
75573775 CCGGGCTATGTCTCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
75573807 AGCTATATCC
Statistics
Matches: 132, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
38 28 0.21
39 15 0.11
40 89 0.67
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:75573767 original size:78 final size:80
Alignment explanation
Indices: 75573613--75573806 Score: 268
Period size: 78 Copynumber: 2.5 Consensus size: 80
75573603 TATTCGGATG
* * * *
75573613 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGTA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGCA
*
75573678 TTTGTGCGAGTTACT
66 TTGGTGCGAGTTACT
*
75573693 A-ATTCC-GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGC
*
75573755 ATTGGTGTGAGTTACT
65 ATTGGTGCGAGTTACT
* * *
75573771 ATAACCGGGCTATGTCTCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
75573807 AGCTATATCC
Statistics
Matches: 99, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 62 0.63
79 15 0.15
80 22 0.22
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGCA
TTGGTGCGAGTTACT
Found at i:75584498 original size:18 final size:19
Alignment explanation
Indices: 75584475--75584513 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
75584465 ATATATTCAC
75584475 ACATTTTCA-CAATTCAAT
1 ACATTTTCATCAATTCAAT
75584493 ACATTTTCATTCAATTCAAT
1 ACATTTTCA-TCAATTCAAT
75584513 A
1 A
75584514 TCAATGCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (19 bp):
ACATTTTCATCAATTCAAT
Found at i:75585410 original size:3 final size:3
Alignment explanation
Indices: 75585402--75585456 Score: 52
Period size: 3 Copynumber: 20.7 Consensus size: 3
75585392 TTATTTTATT
75585402 TAA TAA TAA T-A TAA T-A TAA -AA TAA T-A TAA T-A TAA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
75585444 TAA T-C TAA TAA TA
1 TAA TAA TAA TAA TA
75585457 TATTTTAACA
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
2 13 0.30
3 30 0.70
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:75585415 original size:5 final size:5
Alignment explanation
Indices: 75585402--75585453 Score: 59
Period size: 5 Copynumber: 10.0 Consensus size: 5
75585392 TTATTTTATT
* * *
75585402 TAATAA TAATA TAATA TAAAA TAATA TAATA TAAAA TAATAA TAATC TAATA
1 TAAT-A TAATA TAATA TAATA TAATA TAATA TAATA TAAT-A TAATA TAATA
75585454 ATATATTTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
5 30 0.77
6 9 0.23
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (5 bp):
TAATA
Found at i:75585426 original size:15 final size:15
Alignment explanation
Indices: 75585406--75585447 Score: 75
Period size: 15 Copynumber: 2.7 Consensus size: 15
75585396 TTTATTTAAT
75585406 AATAATATAATATAA
1 AATAATATAATATAA
75585421 AATAATATAATATAA
1 AATAATATAATATAA
75585436 AATAATAATAAT
1 AATAAT-ATAAT
75585448 CTAATAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 21 0.81
16 5 0.19
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAATATAATATAA
Found at i:75592185 original size:17 final size:17
Alignment explanation
Indices: 75592163--75592197 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
75592153 TTTTGAGAAG
75592163 TTAAAGACATTGTTAAC
1 TTAAAGACATTGTTAAC
75592180 TTAAAGACATTGTTAAC
1 TTAAAGACATTGTTAAC
75592197 T
1 T
75592198 GAAGCTCCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.37
Consensus pattern (17 bp):
TTAAAGACATTGTTAAC
Found at i:75597741 original size:55 final size:55
Alignment explanation
Indices: 75597644--75597752 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
75597634 CGAGCCTACC
* * *
75597644 AAAACAACACGGGCGTGCAACACGCCAGTGTGGAAGAACCGTGGGCAAACCTGTT
1 AAAACAACACGAGCGTGCAACACGCCAGTGTCGAACAACCGTGGGCAAACCTGTT
* * * * *
75597699 AAAACAGCACGAGCGTGCAACACGTCC-GTGTCTAACACCCGTGGTCGAACCTGT
1 AAAACAACACGAGCGTGCAACACG-CCAGTGTCGAACAACCGTGGGCAAACCTGT
75597753 CAAATTAACA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
55 43 0.96
56 2 0.04
ACGTcount: A:0.30, C:0.28, G:0.27, T:0.15
Consensus pattern (55 bp):
AAAACAACACGAGCGTGCAACACGCCAGTGTCGAACAACCGTGGGCAAACCTGTT
Found at i:75604599 original size:40 final size:40
Alignment explanation
Indices: 75604544--75604685 Score: 234
Period size: 40 Copynumber: 3.6 Consensus size: 40
75604534 TATTCGAATG
75604544 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
75604584 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
75604624 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
75604664 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
75604686 TACTTGGGTT
Statistics
Matches: 97, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 14 0.14
40 81 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:75612188 original size:25 final size:25
Alignment explanation
Indices: 75612134--75612216 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 25
75612124 CAGCTTGTAT
* * *
75612134 GAGCTTACCGATT-TCTCAGCTTGTAA
1 GAGCTTACC-ATTAT-TCAGCTCGGAG
*
75612160 GAGCTTACTATTATTCAGCTCGGAG
1 GAGCTTACCATTATTCAGCTCGGAG
* *
75612185 GAGCTTACCATTATTCAGCTCGTAT
1 GAGCTTACCATTATTCAGCTCGGAG
75612210 GAGCTTA
1 GAGCTTA
75612217 TTGTTTATCG
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
25 40 0.82
26 9 0.18
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (25 bp):
GAGCTTACCATTATTCAGCTCGGAG
Found at i:75613386 original size:21 final size:21
Alignment explanation
Indices: 75613360--75613407 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
75613350 CGGCCTGAAG
75613360 CACGGGCGTG-TCCCATAGT-CA
1 CACGGGCGTGTTCCC-TA-TCCA
75613381 CACGGGCGTGTTCCCTATCCA
1 CACGGGCGTGTTCCCTATCCA
75613402 CACGGG
1 CACGGG
75613408 TGTATGACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.04
21 20 0.80
22 4 0.16
ACGTcount: A:0.17, C:0.35, G:0.29, T:0.19
Consensus pattern (21 bp):
CACGGGCGTGTTCCCTATCCA
Found at i:75615118 original size:30 final size:30
Alignment explanation
Indices: 75615072--75615131 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
75615062 TTCCCGAGCC
* *
75615072 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAATGTAATTATGCAAAAGTT
* *
75615102 TAGGGGAAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAATGTAATTATGCAAAAGTT
75615132 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAATGTAATTATGCAAAAGTT
Found at i:75620785 original size:34 final size:34
Alignment explanation
Indices: 75620742--75620809 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
75620732 ATTCCATCCA
75620742 TGTCCAAATTTTTGTCCATATAAAGTATAATGGT
1 TGTCCAAATTTTTGTCCATATAAAGTATAATGGT
75620776 TGTCCAAATTTTTGTCCATATAAAGTATAATGGT
1 TGTCCAAATTTTTGTCCATATAAAGTATAATGGT
75620810 CTAATTACCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (34 bp):
TGTCCAAATTTTTGTCCATATAAAGTATAATGGT
Found at i:75623265 original size:18 final size:19
Alignment explanation
Indices: 75623238--75623282 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 19
75623228 TCAATCATAT
75623238 ATTC-ATACATTTTCA-CA
1 ATTCAATACATTTTCATCA
75623255 ATTCAATACATTTTCATTCA
1 ATTCAATACATTTTCA-TCA
75623275 ATTCAATA
1 ATTCAATA
75623283 TCAATACTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.16
18 11 0.44
20 10 0.40
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTCAATACATTTTCATCA
Found at i:75623952 original size:18 final size:18
Alignment explanation
Indices: 75623925--75623959 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75623915 TTCCTAATTT
* *
75623925 CCTTTTTTTCTTTCTTTC
1 CCTTTCTTTCCTTCTTTC
75623943 CCTTTCTTTCCTTCTTT
1 CCTTTCTTTCCTTCTTT
75623960 TCTTCTCTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (18 bp):
CCTTTCTTTCCTTCTTTC
Found at i:75630835 original size:45 final size:45
Alignment explanation
Indices: 75630771--75630900 Score: 174
Period size: 45 Copynumber: 2.9 Consensus size: 45
75630761 GTTGTACAGT
* * *
75630771 ATTATTCGGGCCTTGGAGCCTAGTAGGCTATAATGCTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* * *
75630816 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
75630861 ATTTTTCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
75630901 ATAAATTCGG
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
43 11 0.14
44 14 0.18
45 51 0.67
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
Found at i:75634149 original size:27 final size:27
Alignment explanation
Indices: 75634111--75634164 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
75634101 ATATGAGAAA
75634111 AGGATATGAAGCCTACCTTGCTTTTAT
1 AGGATATGAAGCCTACCTTGCTTTTAT
75634138 AGGATATGAAGCCTACCTTGCTTTTAT
1 AGGATATGAAGCCTACCTTGCTTTTAT
75634165 GTTAAATACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
AGGATATGAAGCCTACCTTGCTTTTAT
Found at i:75636936 original size:47 final size:47
Alignment explanation
Indices: 75636883--75637444 Score: 836
Period size: 47 Copynumber: 12.0 Consensus size: 47
75636873 TTAGGATTTT
*
75636883 ATGTGATGAATGTGAGCATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* *
75636930 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
75636977 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
75637024 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * *
75637071 ATGTGATGAATGTGAGCATGTATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
75637118 GTGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
75637165 ATGTGATGAATGTGAGCATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* *
75637212 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
75637259 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* *
75637306 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
75637353 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* ** * * *
75637400 ATGTGGTGAATAAGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGC
75637445 TAGTGTGAAA
Statistics
Matches: 462, Mismatches: 53, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 462 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:75637168 original size:22 final size:22
Alignment explanation
Indices: 75637143--75637218 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
75637133 ACATGTATAT
75637143 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
75637165 ATGTGATGAATGTG-AGCATGTATA
1 ATGTGAT-AA-G-GCCGAATGGCCA
75637189 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
75637212 ATGTGAT
1 ATGTGAT
75637219 GAATGTGAGC
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:75637359 original size:22 final size:22
Alignment explanation
Indices: 75637284--75637359 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
75637274 ACATGTATAT
*
75637284 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
* *
75637306 ATGTGATGAATG-TGAGCAT-GCATA
1 ATGTGAT-AAGGCTGA--ATGGC-CA
*
75637330 TATATGATAAGGCTGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
75637353 ATGTGAT
1 ATGTGAT
75637360 GAATGTGAGC
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:75637452 original size:141 final size:141
Alignment explanation
Indices: 75636883--75637444 Score: 1016
Period size: 141 Copynumber: 4.0 Consensus size: 141
75636873 TTAGGATTTT
* *
75636883 ATGTGATGAATGTGAGCATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
75636948 TGCATATGTGTGATAAGGCTGAATGGCCAATGTGGTGAATATGAACATGTATATATGTGATAAGG
66 TGCATATGTGTGATAAGGCTGAATGGCCAATGTGGTGAATATGAACATGTATATATGTGATAAGG
75637013 CCGAATGGCCA
131 CCGAATGGCCA
75637024 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
* *
75637089 TGTATATGTGTGATAAGGCTGAATGGCCAGTGTGGTGAATATGAACATGTATATATGTGATAAGG
66 TGCATATGTGTGATAAGGCTGAATGGCCAATGTGGTGAATATGAACATGTATATATGTGATAAGG
75637154 CCGAATGGCCA
131 CCGAATGGCCA
* *
75637165 ATGTGATGAATGTGAGCATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
75637230 TGCATATGTGTGATAAGGCTGAATGGCCAATGTGGTGAATATGAACATGTATATATGTGATAAGG
66 TGCATATGTGTGATAAGGCTGAATGGCCAATGTGGTGAATATGAACATGTATATATGTGATAAGG
75637295 CCGAATGGCCA
131 CCGAATGGCCA
*
75637306 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCTGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
* * * * *
75637371 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATAAGAACATGCATATATGTGGTAAAG
66 TGCATATGTGTGATAAGGCTGAATGGCCAATGTGGTGAATATGAACATGTATATATGTGATAAGG
75637436 CCGAATGGC
131 CCGAATGGC
75637445 TAGTGTGAAA
Statistics
Matches: 405, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 405 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (141 bp):
ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATGTGTGATAAGGCTGAATGGCCAATGTGGTGAATATGAACATGTATATATGTGATAAGG
CCGAATGGCCA
Found at i:75637713 original size:37 final size:37
Alignment explanation
Indices: 75637607--75637721 Score: 176
Period size: 37 Copynumber: 3.1 Consensus size: 37
75637597 GGAAATATAT
* * *
75637607 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
75637644 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
75637681 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
75637718 TCCG
1 TCCG
75637722 AGCTAAAGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:75640675 original size:46 final size:46
Alignment explanation
Indices: 75640632--75640804 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
75640622 ACATCTCATA
* *
75640632 GCCGATGCATGTCCCAAACATGTCTTACACTGGT-TTACGTCTCAAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGTACT-CGTCTCAAG
* *
75640678 GTCGATGCATGTCCCAAACATGTCTTACACTAGTACTCGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGTACTCGTCTCAAG
*
75640724 GCCGATGTCATGTCCCAAACATGGTATTACACTAG--CTC-TCAT-AATGTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGTACTCGTC-TCAA---G
** *
75640772 GCTAATGCATGTCCCAGACATGTCTTACACTAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAG
75640805 CTCACATAAG
Statistics
Matches: 109, Mismatches: 11, Indels: 14
0.81 0.08 0.10
Matches are distributed among these distances:
45 4 0.04
46 61 0.56
47 28 0.26
48 16 0.15
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGTACTCGTCTCAAG
Found at i:75648269 original size:46 final size:44
Alignment explanation
Indices: 75648174--75648391 Score: 167
Period size: 46 Copynumber: 4.7 Consensus size: 44
75648164 ATATTTATGT
75648174 CGATGACATGTCCCAGACATGGTCTTACACT-GACACATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-CACATCTCGTAGC
* *
75648220 CGATGCATGTCCCATACATGTCTTACACTAGCATATGTCTCG-AGCC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACA--TCTCGTAG-C
* * *
75648266 CGATGCATGTCCCAGGCATGTCTTACACTAGCACTCGTCTCAATA-C
1 CGATGCATGTCCCAGACATGTCTTACACTAGCA--CATCTC-GTAGC
* * * * * *
75648312 AGATGCCATGTCTCAGACATGGTCTTATACTGGCTCCCATAAT-GT-GTC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG--CACAT-CTCGTAG-C
75648360 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
75648392 TTACAAAAGT
Statistics
Matches: 137, Mismatches: 20, Indels: 32
0.72 0.11 0.17
Matches are distributed among these distances:
44 14 0.10
45 16 0.12
46 61 0.45
47 26 0.19
48 18 0.13
49 1 0.01
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGC
Found at i:75665626 original size:24 final size:24
Alignment explanation
Indices: 75665580--75665639 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 24
75665570 TTTATATTAT
75665580 ATTATTTTAGTATTTAATAATTTTATAC
1 ATTATTTTA-TA--TAATAATTTTA-AC
*
75665608 ATT-TTTTATATAATCATTTTAAC
1 ATTATTTTATATAATAATTTTAAC
75665631 ATTATTTTA
1 ATTATTTTA
75665640 ATGTTTACAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
23 5 0.17
24 15 0.50
26 2 0.07
27 5 0.17
28 3 0.10
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (24 bp):
ATTATTTTATATAATAATTTTAAC
Found at i:75669689 original size:37 final size:37
Alignment explanation
Indices: 75669627--75669735 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
75669617 AGCTCAGACG
* * *
75669627 AAATCTCCACACGAAGTTATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
75669664 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
75669701 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
75669736 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:75669999 original size:100 final size:96
Alignment explanation
Indices: 75669881--75670066 Score: 302
Period size: 100 Copynumber: 1.9 Consensus size: 96
75669871 GCACATCGCC
*
75669881 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACA
75669946 TT-GACCATTCGGCTTTACCACATATGCATATCTCA
62 TTAG-CCATTCGGCTTTACCACATATGCATATCTCA
*
75669981 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
75670046 CCATTCGGCTTTACCACATAT
66 CCATTCGGCTTTACCACATAT
75670067 ATGCATGTTC
Statistics
Matches: 83, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
96 36 0.43
97 1 0.01
100 46 0.55
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATGCATATCTCA
Found at i:75670007 original size:48 final size:48
Alignment explanation
Indices: 75669881--75670067 Score: 295
Period size: 48 Copynumber: 3.8 Consensus size: 48
75669871 GCACATCGCC
*
75669881 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
75669933 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
75669981 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
75670029 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
75670068 TGCATGTTCA
Statistics
Matches: 128, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
48 84 0.66
49 1 0.01
51 1 0.01
52 42 0.33
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:75670116 original size:47 final size:47
Alignment explanation
Indices: 75670038--75670165 Score: 184
Period size: 47 Copynumber: 2.7 Consensus size: 47
75670028 ATACATATTT
* * * * *
75670038 CACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCAC
* * *
75670085 CACATTGGCCGTTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCAC
75670132 CACATTGGCCATTCGGCCTTATCACATATATGCA
1 CACATTGGCCATTCGGCCTTATCACATATATGCA
75670166 ACGACCAGAA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (47 bp):
CACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCAC
Found at i:75671082 original size:30 final size:30
Alignment explanation
Indices: 75671048--75671131 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
75671038 ATTTTCGGAC
*
75671048 CTAGGGGTAAAATGGTCATTTTACAAAAGT
1 CTAGGGGCAAAATGGTCATTTTACAAAAGT
* *
75671078 CTAGGCGCAAAATGGTCATTTTGCAAAAGT
1 CTAGGGGCAAAATGGTCATTTTACAAAAGT
75671108 CTAGGGGCAAAATGGTCATTTTAC
1 CTAGGGGCAAAATGGTCATTTTAC
75671132 CCAAGTATAG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACAAAAGT
Found at i:75671632 original size:46 final size:47
Alignment explanation
Indices: 75671505--75671632 Score: 138
Period size: 44 Copynumber: 2.8 Consensus size: 47
75671495 CCGCATTATG
* * *
75671505 AGAGCCAGTGTAAAACCATGTTTGGGACATGGCATCGACATTAAGACA
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACA-TAAGACA
* * * *
75671553 AGAGCTAGTGTAAGA-CATCTCTGGGCCAT-GCATCGAC-TACGAGTA
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATAAGA-CA
*
75671598 A-AGCTAGTGTAAGACCATGTCCGGGACATGGCATC
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
75671633 AGTATCCTAC
Statistics
Matches: 67, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
44 17 0.25
45 13 0.19
46 13 0.19
47 11 0.16
48 13 0.19
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (47 bp):
AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATAAGACA
Found at i:75675615 original size:22 final size:22
Alignment explanation
Indices: 75675588--75675632 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
75675578 TTACCATTAA
*
75675588 AAAAATTAAAAACCCTAACCCT
1 AAAAATTAAAAACCATAACCCT
75675610 AAAAATTAAAAACCATAACCCT
1 AAAAATTAAAAACCATAACCCT
75675632 A
1 A
75675633 GAAGAGAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.58, C:0.24, G:0.00, T:0.18
Consensus pattern (22 bp):
AAAAATTAAAAACCATAACCCT
Found at i:75676213 original size:10 final size:10
Alignment explanation
Indices: 75676198--75676250 Score: 51
Period size: 10 Copynumber: 5.7 Consensus size: 10
75676188 ATGTTCCAAA
*
75676198 ATTTTAATAT
1 ATTTAAATAT
*
75676208 ATTTTAATAT
1 ATTTAAATAT
*
75676218 ATTAAAATAT
1 ATTTAAATAT
75676228 A-TTAAATAT
1 ATTTAAATAT
75676237 A-TTAAA-A-
1 ATTTAAATAT
75676244 ATTTAAA
1 ATTTAAA
75676251 ATTGATTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
7 1 0.03
8 6 0.15
9 13 0.33
10 19 0.49
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
ATTTAAATAT
Found at i:75676236 original size:9 final size:9
Alignment explanation
Indices: 75676203--75676242 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
75676193 CCAAAATTTT
*
75676203 AATATATTTT
1 AATATA-TTA
75676213 AATATATTAA
1 AATATATT-A
75676223 AATATATTA
1 AATATATTA
75676232 AATATATTA
1 AATATATTA
75676241 AA
1 AA
75676243 AATTTAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 14 0.50
10 14 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AATATATTA
Found at i:75676237 original size:19 final size:20
Alignment explanation
Indices: 75676203--75676243 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
75676193 CCAAAATTTT
*
75676203 AATATATTTTAATATATTAA
1 AATATATTTAAATATATTAA
75676223 AATATA-TTAAATATATTAA
1 AATATATTTAAATATATTAA
75676242 AA
1 AA
75676244 ATTTAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AATATATTTAAATATATTAA
Found at i:75676309 original size:17 final size:17
Alignment explanation
Indices: 75676273--75676308 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
75676263 CAACATTTTC
75676273 TTTAACATATTTAAAAT
1 TTTAACATATTTAAAAT
*
75676290 TTTAATATATTT-AAAT
1 TTTAACATATTTAAAAT
75676306 TTT
1 TTT
75676309 TTAAGTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTAACATATTTAAAAT
Found at i:75676477 original size:10 final size:10
Alignment explanation
Indices: 75676458--75676505 Score: 68
Period size: 9 Copynumber: 5.2 Consensus size: 10
75676448 TATACTTAAC
75676458 ATTTTT-AAT
1 ATTTTTAAAT
75676467 ATTTTTAAAT
1 ATTTTTAAAT
75676477 ATTTTTAAAT
1 ATTTTTAAAT
75676487 -TTTTTAAA-
1 ATTTTTAAAT
75676495 A-TTTTAAAT
1 ATTTTTAAAT
75676504 AT
1 AT
75676506 ATTAAGAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
8 7 0.20
9 15 0.43
10 13 0.37
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
ATTTTTAAAT
Found at i:75676482 original size:19 final size:18
Alignment explanation
Indices: 75676453--75676505 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
75676443 TTGGTTATAC
*
75676453 TTAACATTTTTAATATTT
1 TTAAAATTTTTAATATTT
75676471 TTAAATATTTTTAA-ATTTT
1 TTAAA-ATTTTTAATA-TTT
*
75676490 TTAAAATTTTAAATAT
1 TTAAAATTTTTAATAT
75676506 ATTAAGAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 13 0.43
19 17 0.57
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (18 bp):
TTAAAATTTTTAATATTT
Found at i:75676510 original size:9 final size:9
Alignment explanation
Indices: 75676458--75676510 Score: 54
Period size: 10 Copynumber: 5.8 Consensus size: 9
75676448 TATACTTAAC
*
75676458 ATTTTTAAT
1 ATTTTAAAT
75676467 ATTTTTAAAT
1 A-TTTTAAAT
75676477 ATTTTTAAAT
1 A-TTTTAAAT
*
75676487 TTTTTAAA-
1 ATTTTAAAT
75676495 ATTTTAAAT
1 ATTTTAAAT
*
75676504 ATATTAA
1 ATTTTAA
75676511 GAAAAAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
8 7 0.18
9 14 0.37
10 17 0.45
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
ATTTTAAAT
Found at i:75676593 original size:18 final size:17
Alignment explanation
Indices: 75676547--75676585 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
75676537 AAAATATATA
* *
75676547 TTAAGTATATTAAAATT
1 TTAAATATATTAAACTT
75676564 TTAAATATATTAAACTT
1 TTAAATATATTAAACTT
75676581 TTAAA
1 TTAAA
75676586 ATTAATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (17 bp):
TTAAATATATTAAACTT
Found at i:75676626 original size:19 final size:21
Alignment explanation
Indices: 75676587--75676626 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
75676577 ACTTTTAAAA
75676587 TTAATTATACTTAACATTTTT
1 TTAATTATACTTAACATTTTT
*
75676608 TTAA-TATATTTAA-ATTTTT
1 TTAATTATACTTAACATTTTT
75676627 AGAAAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 8 0.44
21 4 0.22
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (21 bp):
TTAATTATACTTAACATTTTT
Found at i:75677708 original size:11 final size:11
Alignment explanation
Indices: 75677692--75677728 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
75677682 CAGTTAATCT
75677692 GTTAGCTGTTA
1 GTTAGCTGTTA
75677703 GTTAGCTGTTA
1 GTTAGCTGTTA
*
75677714 GTTAATCTGTTA
1 GTT-AGCTGTTA
75677726 GTT
1 GTT
75677729 TGTTCTCTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.19, C:0.08, G:0.24, T:0.49
Consensus pattern (11 bp):
GTTAGCTGTTA
Found at i:75680049 original size:15 final size:15
Alignment explanation
Indices: 75680029--75680072 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
75680019 AAAAATATTT
75680029 ATATTTTTTATTTTA
1 ATATTTTTTATTTTA
** *
75680044 ATATTTAATAATTTA
1 ATATTTTTTATTTTA
75680059 ATAATTTTTTATTT
1 AT-ATTTTTTATTT
75680073 ATTAAATTTT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATATTTTTTATTTTA
Found at i:75687067 original size:49 final size:49
Alignment explanation
Indices: 75687001--75687245 Score: 328
Period size: 49 Copynumber: 4.9 Consensus size: 49
75686991 TAGCCAAAGC
* *
75687001 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* * * * *
75687050 TATCCGGTACATGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC-AAT
* * * *
75687100 CATCTGATACACGTAATAGCCTGCACTTAGTACTACACATGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-T
* * *
75687151 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
*
75687200 AATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
75687246 TCACAATAGA
Statistics
Matches: 166, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 83 0.50
50 44 0.27
51 39 0.23
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
Found at i:75691519 original size:3 final size:3
Alignment explanation
Indices: 75691506--75691539 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
75691496 ATAAAATATT
*
75691506 ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
75691540 GTAAATATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:75695504 original size:17 final size:17
Alignment explanation
Indices: 75695482--75695514 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
75695472 AAAACCCTAA
*
75695482 TTTTTCCTT-TTTCTTT
1 TTTTTTCTTCTTTCTTT
75695498 TTTTTTCTTCTTTCTTT
1 TTTTTTCTTCTTTCTTT
75695515 CCCCTAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTCTTCTTTCTTT
Found at i:75695730 original size:3 final size:3
Alignment explanation
Indices: 75695703--75695746 Score: 56
Period size: 3 Copynumber: 15.0 Consensus size: 3
75695693 TTATCTCAAT
*
75695703 TAA TAGA TAA -AA T-A TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
75695747 CAAGTAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
2 4 0.11
3 29 0.81
4 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:75697369 original size:14 final size:13
Alignment explanation
Indices: 75697346--75697377 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
75697336 AGGATATCAA
75697346 AACAATAATTAAG
1 AACAATAATTAAG
75697359 AACACATAATTAAG
1 AACA-ATAATTAAG
75697373 AACAA
1 AACAA
75697378 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:75698336 original size:468 final size:468
Alignment explanation
Indices: 75697460--75698399 Score: 1542
Period size: 468 Copynumber: 2.0 Consensus size: 468
75697450 AGGGGATATA
*
75697460 GTTCATAACTAAAAAGGAAAACATATCAGAAGAATAATGAATACAAAACATAAAGAAAATCCAAA
1 GTTCATAACTAAAAAGGAAAACATATCAGAAGAATAATGAATACAAAACATAAAGAAAACCCAAA
75697525 ACTTTTGAAGGGAAATTAAGGGGAGATCGGCAGTCTTGATGGTGACTCCAGCTTCTGAGATGGAT
66 ACTTTTGAAGGGAAATTAAGGGGAGATCGGCAGTCTTGATGGTGACTCCAGCTTCTGAGATGGAT
75697590 CAATTAGCTTCCCTTGAGCAGTTCCATGCCTCCTTCTATCTGTGCCCCTTTTCTTCTTCCTTTAG
131 CAATTAGCTTCCCTTGAGCAGTTCCATGCCTCCTTCTATCTGTGCCCCTTTTCTTCTTCCTTTAG
* * * *
75697655 GGCGTATTTATAGGCTTTAGAATGCCTAAAAACCTTCAAAATTAGCCTTTTTCGAATTGGACTCA
196 GGCATATTTATAGGCTTTAGAATGCCTAAAAACCCTCAAAATTAGCCTTTTCCGAATTGAACTCA
* *
75697720 ACTTGGGCTCGATAGGGTCACGCCCGTGTACGATTACTTCAGGCTGTGGTCAAGCCTGTTAAATA
261 ACTTGGGCTCGATAGGGACACGCCCGGGTACGATTACTTCAGGCTGTGGTCAAGCCTGTTAAATA
* *
75697785 GGCACGGGCGTATGGTCTACCCGTGTGAATCGTGCTTCGATTCTACCAAATTGACACGACCGTGT
326 GGCACGGGCGTATGGTCTACCCATGTGAATCATGCTTCGATTCTACCAAATTGACACGACCGTGT
* * * * *
75697850 GGTCTGCCTGTGTGAGGAAGTTTAGGCCATGTTGATTTCGTACTTTGGCTCATTTTCTCAGTTTT
391 GGTCTACCTATGTGAGGAAGTTCAGGCCATGTTGATTTCGTAATTTGGCTCATTTTCTCAATTTT
75697915 TAGTTCATTTCTC
456 TAGTTCATTTCTC
* *
75697928 GTTCATAACTAAAAAGGAAAACATATTAGAAGAATAATGAATACAATACATAAAGAAAACCCAAA
1 GTTCATAACTAAAAAGGAAAACATATCAGAAGAATAATGAATACAAAACATAAAGAAAACCCAAA
** * *
75697993 ACTTTTGAAGGGAAATTGAA-GGGAGATCTTCAGTTTTGATGGTGACTCCGGCTTCTGAGATGGA
66 ACTTTTGAAGGGAAATT-AAGGGGAGATCGGCAGTCTTGATGGTGACTCCAGCTTCTGAGATGGA
* * **
75698057 TCAATTGGCTTCCCTTGAGCAGTTCCCTGCCTCCTTCTATCTGTGCCCCTTTT-TCTCTTTTTTT
130 TCAATTAGCTTCCCTTGAGCAGTTCCATGCCTCCTTCTATCTGTGCCCCTTTTCT-TCTTCCTTT
*
75698121 AGGGCATGTTTATAGGCTTTAGAATGCCTAAAAACCCTCAAAATTAGCCTTTTCCGAATTGAACT
194 AGGGCATATTTATAGGCTTTAGAATGCCTAAAAACCCTCAAAATTAGCCTTTTCCGAATTGAACT
* *
75698186 CAACTTGGGCTCGATAGGGACACGCCCGGGTGCGATTACTTTAGGCTGTGGTCAAGCCTGTTAAA
259 CAACTTGGGCTCGATAGGGACACGCCCGGGTACGATTACTTCAGGCTGTGGTCAAGCCTGTTAAA
* *
75698251 TAGGCACGGGCGTGTGGTCTACCTATGTGAATCATGCTTCGATTCTACCAAATTGACACGACCGT
324 TAGGCACGGGCGTATGGTCTACCCATGTGAATCATGCTTCGATTCTACCAAATTGACACGACCGT
* * *
75698316 GTGGTCTACCTATGTGAGGAAGTTCAGGCTATGTTGATTTTGTAATTTGTCTCATTTTCTCAATT
389 GTGGTCTACCTATGTGAGGAAGTTCAGGCCATGTTGATTTCGTAATTTGGCTCATTTTCTCAATT
**
75698381 TTTAGTTTGTTTCTC
454 TTTAGTTCATTTCTC
75698396 GTTC
1 GTTC
75698400 CTTTTGCTCT
Statistics
Matches: 436, Mismatches: 34, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
467 1 0.00
468 433 0.99
469 2 0.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (468 bp):
GTTCATAACTAAAAAGGAAAACATATCAGAAGAATAATGAATACAAAACATAAAGAAAACCCAAA
ACTTTTGAAGGGAAATTAAGGGGAGATCGGCAGTCTTGATGGTGACTCCAGCTTCTGAGATGGAT
CAATTAGCTTCCCTTGAGCAGTTCCATGCCTCCTTCTATCTGTGCCCCTTTTCTTCTTCCTTTAG
GGCATATTTATAGGCTTTAGAATGCCTAAAAACCCTCAAAATTAGCCTTTTCCGAATTGAACTCA
ACTTGGGCTCGATAGGGACACGCCCGGGTACGATTACTTCAGGCTGTGGTCAAGCCTGTTAAATA
GGCACGGGCGTATGGTCTACCCATGTGAATCATGCTTCGATTCTACCAAATTGACACGACCGTGT
GGTCTACCTATGTGAGGAAGTTCAGGCCATGTTGATTTCGTAATTTGGCTCATTTTCTCAATTTT
TAGTTCATTTCTC
Found at i:75702379 original size:55 final size:55
Alignment explanation
Indices: 75702286--75702394 Score: 182
Period size: 55 Copynumber: 2.0 Consensus size: 55
75702276 CTTCTCCCAC
* * *
75702286 GCCCGTGTTAATTTAACAGGTTTGGCCACGGGTTAAAGGCACGGGCGTGTCGCAT
1 GCCCATGTTAATTTAACAGGTTTGGCCACGGGTAAAAGGCACGCGCGTGTCGCAT
*
75702341 GCCCATGTTAATTTGACAGGTTTGGCCACGGGTAAAAGGCACGCGCGTGTCGCA
1 GCCCATGTTAATTTAACAGGTTTGGCCACGGGTAAAAGGCACGCGCGTGTCGCA
75702395 CACTCGTGCT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.21, C:0.23, G:0.32, T:0.24
Consensus pattern (55 bp):
GCCCATGTTAATTTAACAGGTTTGGCCACGGGTAAAAGGCACGCGCGTGTCGCAT
Found at i:75708358 original size:14 final size:14
Alignment explanation
Indices: 75708339--75708365 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75708329 CGAAATTCAA
75708339 AGAAGAAGAAGAAT
1 AGAAGAAGAAGAAT
75708353 AGAAGAAGAAGAA
1 AGAAGAAGAAGAA
75708366 GTGTTCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.04
Consensus pattern (14 bp):
AGAAGAAGAAGAAT
Done.