Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 230 of 343
Found at i:75709348 original size:15 final size:15
Alignment explanation
Indices: 75709318--75709360 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 15
75709308 AGAAAAAACA
75709318 AAAATGAAAGTTAAAAT
1 AAAAT-AAA-TTAAAAT
75709335 AAAATAAATTAAAAT
1 AAAATAAATTAAAAT
*
75709350 AAATTAAATTA
1 AAAATAAATTA
75709361 TTCAAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 17 0.68
16 3 0.12
17 5 0.20
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (15 bp):
AAAATAAATTAAAAT
Found at i:75711006 original size:75 final size:75
Alignment explanation
Indices: 75710883--75711029 Score: 267
Period size: 75 Copynumber: 2.0 Consensus size: 75
75710873 GCATCGAACG
*
75710883 AGCGATCGAGCGCTTTACGATTTGGTATGCGCGAATTTTCCAGTTTTAATTTAACTCTTGAAAAT
1 AGCGATCGAGCGCTTTACGATTTGGTACGCGCGAATTTTCCAGTTTTAATTTAACTCTTGAAAAT
75710948 CCTACTAGAA
66 CCTACTAGAA
* *
75710958 AGCGATCGAGCGTTTTACGATTTGGTACGCGCGATTTTTCCAGTTTTAATTTAACTCTTGAAAAT
1 AGCGATCGAGCGCTTTACGATTTGGTACGCGCGAATTTTCCAGTTTTAATTTAACTCTTGAAAAT
75711023 CCTACTA
66 CCTACTA
75711030 TAAATTAAGA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (75 bp):
AGCGATCGAGCGCTTTACGATTTGGTACGCGCGAATTTTCCAGTTTTAATTTAACTCTTGAAAAT
CCTACTAGAA
Found at i:75711136 original size:81 final size:81
Alignment explanation
Indices: 75711001--75711163 Score: 317
Period size: 81 Copynumber: 2.0 Consensus size: 81
75710991 ATTTTTCCAG
75711001 TTTTAATTTAACTCTTGAAAATCCTACTATAAATTAAGATTTTCGCTTCTCCTCCCTCTTCATCA
1 TTTTAATTTAACTCTTGAAAATCCTACTATAAATTAAGATTTTCGCTTCTCCTCCCTCTTCATCA
75711066 TTTTTCTCTTTCTTCT
66 TTTTTCTCTTTCTTCT
*
75711082 TTTTAATTTAACTCTTGAAAATCCTACTATAAATTAAGATTTTCGCTTCTCCTCCCTCTTCATTA
1 TTTTAATTTAACTCTTGAAAATCCTACTATAAATTAAGATTTTCGCTTCTCCTCCCTCTTCATCA
75711147 TTTTTCTCTTTCTTCT
66 TTTTTCTCTTTCTTCT
75711163 T
1 T
75711164 ACTCCTTTCT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.22, C:0.24, G:0.04, T:0.50
Consensus pattern (81 bp):
TTTTAATTTAACTCTTGAAAATCCTACTATAAATTAAGATTTTCGCTTCTCCTCCCTCTTCATCA
TTTTTCTCTTTCTTCT
Found at i:75713854 original size:22 final size:22
Alignment explanation
Indices: 75713829--75713873 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
75713819 AACTTGTCCT
* *
75713829 CATCGCGACATTGGGAGCTTGA
1 CATCACGACATTGAGAGCTTGA
**
75713851 CATCACGATGTTGAGAGCTTGA
1 CATCACGACATTGAGAGCTTGA
75713873 C
1 C
75713874 GTTACGATGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (22 bp):
CATCACGACATTGAGAGCTTGA
Found at i:75715276 original size:44 final size:44
Alignment explanation
Indices: 75715197--75715994 Score: 514
Period size: 44 Copynumber: 17.6 Consensus size: 44
75715187 TCATTCCAAC
* ** *
75715197 CCACTGCAACTTCAGGG-GTATAGGAATT-GTCGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAG-ATAAG-ATTAGTATCTTCAATCTACT
* * *
75715241 CCACTGCAACTTCAAGGAGATAAGATTAGTAGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTAGTATCTTCAATCTACT
* * * * *
75715285 CCATTGCAACTTTAGGGAAATAAGATTCGCATCTTCAATCTACT
1 CCACTGCAACTTCAGGGAGATAAGATTAGTATCTTCAATCTACT
* * * * * *
75715329 CCATTACAAC-TCTAGGGAGATAAGATTTGTAACTTGTAGCATTAATCCATT
1 CCACTGCAACTTC-AGGGAGATAAGATTAGTATC-T-T--C---AATCTACT
* * * *
75715380 CCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTAGTATCTTCAATCTACT
* *
75715424 TCACTGCAACTTCAAGGG-GATAAGATTTGTATCTTCAATCTACT
1 CCACTGCAACTTC-AGGGAGATAAGATTAGTATCTTCAATCTACT
** * * * * *
75715468 CCACTGCATGTTCAGGGAGATAGGATTTGTAACTTGTAGCATTAATCCATT
1 CCACTGCAACTTCAGGGAGATAAGATTAGTATC-T-T--C---AATCTACT
* * * *
75715519 CCACTGCAACTTCAGGGAAATAAGATTCGCATATTCAATCTACT
1 CCACTGCAACTTCAGGGAGATAAGATTAGTATCTTCAATCTACT
* * * *
75715563 CCACTTCAACTTCAGTGAGATAAGATTCA-CATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATT-AGTATCTTCAATCTACT
* * * * * *
75715607 CCACTGCATCTTCAAGGAGATAAGATTTGTAACTTTTAACATTAATCCATT
1 CCACTGCAACTTCAGGGAGATAAGATTAGT-A-TCTT--C---AATCTACT
* * * * * *
75715658 CCACTACAACTTCAGGGAAATAAGATTCGCATATTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTAGTATCTTCAATCTACT
* ** * *
75715702 CCATTGCAACTTCAGGGAGATAAGATTTTCTATCTTTAATCTATT
1 CCACTGCAACTTCAGGGAGATAAGA-TTAGTATCTTCAATCTACT
** * * * *
75715747 CCACTAAAACTTCAAGTAGATAAGACTT-GTAACTTCAACCTACT
1 CCACTGCAACTTCAGGGAGATAAGA-TTAGTATCTTCAATCTACT
* * * * *
75715791 CCACTGCAAATTCAGGGAGATAAGGTTTA-TAGCTTTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAA-GATTAGTATCTTCAATCTACT
* * ** * *
75715835 CTACTGCAATTTCAAAGAGATAAGATTTGCTATCTTTAATCTACT
1 CCACTGCAACTTCAGGGAGATAAGATTAG-TATCTTCAATCTACT
*
75715880 CCACTGCAACTTCAGGGAGATAAGATTTA-TAGCTTCAATCTACT
1 CCACTGCAACTTCAGGGAGATAAGA-TTAGTATCTTCAATCTACT
* * * **
75715924 CCACTACAACTTTAGGGAGATAAGATTAGTAGCTTCAATCTGTT
1 CCACTGCAACTTCAGGGAGATAAGATTAGTATCTTCAATCTACT
* * **
75715968 CTACTGCAATTTCAGAAAGATAAGATT
1 CCACTGCAACTTCAGGGAGATAAGATT
75715995 CGCCATAATG
Statistics
Matches: 586, Mismatches: 132, Indels: 72
0.74 0.17 0.09
Matches are distributed among these distances:
43 14 0.02
44 382 0.65
45 77 0.13
46 7 0.01
47 3 0.01
48 3 0.01
49 5 0.01
50 3 0.01
51 90 0.15
52 2 0.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATTAGTATCTTCAATCTACT
Found at i:75715410 original size:95 final size:93
Alignment explanation
Indices: 75715229--75715994 Score: 392
Period size: 95 Copynumber: 8.4 Consensus size: 93
75715219 GGAATTGTCG
* * * * ** *
75715229 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTAGTAGCT-T-C---AATCTGCTCCAT
1 CTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAACTGTACATTAATCCACTCCAC
*
75715289 TGCAACTTTAGGGAAATAAGATTCGCAT
66 TGCAACTTCAGGGAAATAAGATTCGCAT
* * *
75715317 CTTCAATCTACTCCATTACAAC-TCTAGGGAGATAAGATTTGTAACTTGTAGCATTAATCCATTC
1 CTTCAATCTGCTCCATTGCAACTTC-AGGGAGATAAGATTTGTAAC-TGTA-CATTAATCCACTC
75715381 CACTGCAACTTCAGGGAAATAAGATTCGCAT
63 CACTGCAACTTCAGGGAAATAAGATTCGCAT
* * * *
75715412 CTTCAATCTGCTTCACTGCAACTTCAAGGG-GATAAGATTTGTATCT-T-C---AATCTACTCCA
1 CTTCAATCTGCTCCATTGCAACTTC-AGGGAGATAAGATTTGTAACTGTACATTAATCCACTCCA
** * * * * *
75715471 CTGCATGTTCAGGGAGATAGGATTTGTAA
65 CTGCAACTTCAGGGAAATAAGATTCGCAT
*** * * * *
75715500 CTTGTAGCATTAATCCATTCCACTGCAACTTCAGGGAAATAAGA--T-T--C-GCATATTCAATC
1 C-T-T--C---AATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAACTGTACATT-AATC
* * * * *
75715559 TACTCCACTTCAACTTCAGTGAGATAAGATTCACAT
58 CACTCCACTGCAACTTCAGGGAAATAAGATTCGCAT
* * * * *
75715595 CTTCAATCTGCTCCACTGCATCTTCAAGGAGATAAGATTTGTAACTTTTAACATTAATCCATTCC
1 CTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAAC-TGT-ACATTAATCCACTCC
*
75715660 ACTACAACTTCAGGGAAATAAGATTCGCAT
64 ACTGCAACTTCAGGGAAATAAGATTCGCAT
* * * * *
75715690 ATTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTT-T--CTAT-CTTTAATCTATTCCAC
1 CTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAACTGTACATTAATCCACTCCAC
** * * * * *
75715751 TAAAACTTCAAGTAGATAAGACTT-GTAA
66 TGCAACTTCAGGGAAATAAGA-TTCGCAT
* * * * * * * ** *
75715779 CTTCAACCTACTCCACTGCAAATTCAGGGAGATAAGGTTTAT-A--G--CTTTAATCTGCTCTAC
1 CTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAACTGTACATTAATCCACTCCAC
* ** * *
75715839 TGCAATTTCAAAGAGATAAGATTTGCTAT
66 TGCAACTTCAGGGAAATAAGATTCGC-AT
* * * * * *
75715868 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAGCT-T-C---AATCTACTCCAC
1 CTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAACTGTACATTAATCCACTCCAC
* * * * * *
75715928 TACAACTTTAGGGAGATAAGATTAGTAG
66 TGCAACTTCAGGGAAATAAGATTCGCAT
* * * * **
75715956 CTTCAATCTGTTCTACTGCAATTTCAGAAAGATAAGATT
1 CTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATT
75715995 CGCCATAATG
Statistics
Matches: 529, Mismatches: 109, Indels: 80
0.74 0.15 0.11
Matches are distributed among these distances:
87 4 0.01
88 158 0.30
89 137 0.26
90 7 0.01
91 5 0.01
92 5 0.01
93 4 0.01
94 7 0.01
95 192 0.36
96 10 0.02
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (93 bp):
CTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAACTGTACATTAATCCACTCCAC
TGCAACTTCAGGGAAATAAGATTCGCAT
Found at i:75715495 original size:139 final size:138
Alignment explanation
Indices: 75715240--75715907 Score: 715
Period size: 139 Copynumber: 4.8 Consensus size: 138
75715230 TTCAATCTGC
* * * * * * * *
75715240 TCCACTGCAACTTCAAGGAGATAAGATTAGTAGCTTCAATCTGCTCCATTGCAACTTTAGGGAAA
1 TCCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTCAGGG-GA
* * * *
75715305 TAAGATTCGCATCTTCAATCTACTCCATTACAAC-TCTAGGGAGATAAGATTTGTAACTTGTAGC
65 TAAGATTTGTATCTTCAATCTACTCCACTGCAACTTC-AGGGAGATAAGATTTGTAACTTGTAGC
75715369 ATTAATCCAT
129 ATTAATCCAT
*
75715379 TCCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTTCACTGCAACTTCAAGGGGA
1 TCCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTC-AGGGGA
** *
75715444 TAAGATTTGTATCTTCAATCTACTCCACTGCATGTTCAGGGAGATAGGATTTGTAACTTGTAGCA
65 TAAGATTTGTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCA
75715509 TTAATCCAT
130 TTAATCCAT
* * * *
75715518 TCCACTGCAACTTCAGGGAAATAAGATTCGCATATTCAATCTACTCCACTTCAACTTCAGTGAGA
1 TCCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTCAG-GGGA
*** * * * * *
75715583 TAAGATTCACATCTTCAATCTGCTCCACTGCATCTTCAAGGAGATAAGATTTGTAACTTTTAACA
65 TAAGATTTGTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCA
75715648 TTAATCCAT
130 TTAATCCAT
* * *
75715657 TCCACTACAACTTCAGGGAAATAAGATTCGCATATTCAATCTGCTCCATTGCAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTCAGGG-GA
* * * ** * * *
75715722 TAAGATTTTCTATCTTTAATCTATTCCACTAAAACTTCAAGTAGATAAGACTTGTAAC-T-T--C
65 TAAGA-TTTGTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGC
*
75715783 ---AA-CCTAC
129 ATTAATCC-AT
* * * *** * * * * * *
75715790 TCCACTGCAAATTCAGGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAATTTCAAAGAGA
1 TCCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTC-AGGGGA
*
75715855 TAAGATTTGCTATCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTT
65 TAAGATTTG-TATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTT
75715908 ATAGCTTCAA
Statistics
Matches: 452, Mismatches: 69, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
132 5 0.01
133 92 0.20
134 2 0.00
136 1 0.00
138 4 0.01
139 301 0.67
140 47 0.10
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.32
Consensus pattern (138 bp):
TCCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTCAGGGGAT
AAGATTTGTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCAT
TAATCCAT
Found at i:75715793 original size:89 final size:88
Alignment explanation
Indices: 75715518--75715994 Score: 374
Period size: 89 Copynumber: 5.3 Consensus size: 88
75715508 ATTAATCCAT
* * * *
75715518 TCCACTGCAACTTCAGGGAAATAAGATTCGCATA--TTCAATCTACTCCACTTCAACTTC-AGTG
1 TCCACTGCAACTTCAGGGAGATAAGATT--TATAGCTTTAATCTACTCCACTACAACTTCAAG-G
* * *
75715580 AGATAAGATTCA-CATCTTCAATCTGC
63 AGATAAGATT-AGTAACTTCAATCTAC
* * * *
75715606 TCCACTGCATCTTCAAGGAGATAAGATTTGTAACTTTTAA-CATTAATCCATTCCACTACAACTT
1 TCCACTGCAACTTCAGGGAGATAAGATTTATAGC-TTTAATC--T-A--C--TCCACTACAACTT
* * * * *
75715670 CAGGGAAATAAGATTCGCATA-TTCAATCTGC
58 CAAGGAGATAAGATTAGTA-ACTTCAATCTAC
* * * * * *
75715701 TCCATTGCAACTTCAGGGAGATAAGATTTTCTATCTTTAATCTATTCCACTAAAACTTCAAGTAG
1 TCCACTGCAACTTCAGGGAGATAAGA-TTTATAGCTTTAATCTACTCCACTACAACTTCAAGGAG
*
75715766 ATAAGACTT-GTAACTTCAACCTAC
65 ATAAGA-TTAGTAACTTCAATCTAC
* * * * * * *
75715790 TCCACTGCAAATTCAGGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAATTTCAAAGAGA
1 TCCACTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTACTCCACTACAACTTCAAGGAGA
* * *
75715855 TAAGATTTGCTATCTTTAATCTAC
66 TAAGATTAG-TAACTTCAATCTAC
* * *
75715879 TCCACTGCAACTTCAGGGAGATAAGATTTATAGCTTCAATCTACTCCACTACAACTTTAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTACTCCACTACAACTTCAAGGAGA
* **
75715944 TAAGATTAGTAGCTTCAATCTGT
66 TAAGATTAGTAACTTCAATCTAC
* * **
75715967 TCTACTGCAATTTCAGAAAGATAAGATT
1 TCCACTGCAACTTCAGGGAGATAAGATT
75715995 CGCCATAATG
Statistics
Matches: 311, Mismatches: 59, Indels: 38
0.76 0.14 0.09
Matches are distributed among these distances:
86 2 0.01
87 2 0.01
88 96 0.31
89 133 0.43
90 3 0.01
91 1 0.00
93 2 0.01
94 1 0.00
95 63 0.20
96 8 0.03
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (88 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTACTCCACTACAACTTCAAGGAGA
TAAGATTAGTAACTTCAATCTAC
Found at i:75715857 original size:133 final size:133
Alignment explanation
Indices: 75715229--75715994 Score: 418
Period size: 139 Copynumber: 5.6 Consensus size: 133
75715219 GGAATTGTCG
* * * * * * *
75715229 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTAGTAGCTTCAATCTGCTCCATTGCAA
1 CTTCAACCTACTCCACTACAAATTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTCTACTGCAA
** * * * * * * *
75715294 CTTT-AGGGAAATAAGATTCGC-ATCTTCAATCTACTCCATTACAAC-TCTAGGGAGATAAGATT
66 -TTTCAAAGAGATAAGATTTGCTATCTTTAATCTACTCCACTAAAACTTC-AAGGAGATAAGACT
*
75715356 TGTAA
129 TATAA
* * * * * * *
75715361 CTTGTAGCATTAATCC-ATTCCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCT-
1 C-T-T--C---AA-CCTACTCCACTACAAATTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTC
* * * * ** ** *
75715424 TCACTGCAACTTCAAGGGGATAAGATTTG-TATCTTCAATCTACTCCACTGCATGTTCAGGGAGA
58 T-ACTGCAATTTCAAAGAGATAAGATTTGCTATCTTTAATCTACTCCACTAAAACTTCAAGGAGA
* * *
75715488 TAGGATTTGTAA
122 TAAGACTTATAA
* * * * * * ** *
75715500 CTTGTAGCATTAATCC-ATTCCACTGCAACTTCAGGGAAATAAGATTCGCATATTCAATCTACTC
1 C-T-T--C---AA-CCTACTCCACTACAAATTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTC
* * * ** ** * * ** *
75715564 CACTTCAACTTCAGTGAGATAAGATTCAC-ATCTTCAATCTGCTCCACTGCATCTTCAAGGAGAT
58 TACTGCAATTTCAAAGAGATAAGATTTGCTATCTTTAATCTACTCCACTAAAACTTCAAGGAGAT
* *
75715628 AAGATTTGTAA
123 AAGACTTATAA
* * * * * * ** *
75715639 CTTTTAACATTAATCCATTCCACTACAACTTCAGGGAAATAAGATTCGCATATTCAATCTGCTCC
1 C-TTCAAC-CT-A--C--TCCACTACAAATTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTCT
* * ** * * *
75715704 ATTGCAACTTCAGGGAGATAAGATTTTCTATCTTTAATCTATTCCACTAAAACTTCAAGTAGATA
59 ACTGCAATTTCAAAGAGATAAGATTTGCTATCTTTAATCTACTCCACTAAAACTTCAAGGAGATA
*
75715769 AGACTTGTAA
124 AGACTTATAA
* * *
75715779 CTTCAACCTACTCCACTGCAAATTCAGGGAGATAAGGTTTA-TAGCTTTAATCTGCTCTACTGCA
1 CTTCAACCTACTCCACTACAAATTCAGGGAGATAA-GATTAGTAGCTTCAATCTGCTCTACTGCA
** * *
75715843 ATTTCAAAGAGATAAGATTTGCTATCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTT
65 ATTTCAAAGAGATAAGATTTGCTATCTTTAATCTACTCCACTAAAACTTCAAGGAGATAAGACTT
*
75715908 ATAG
130 ATAA
* * * *
75715912 CTTCAATCTACTCCACTACAACTTTAGGGAGATAAGATTAGTAGCTTCAATCTGTTCTACTGCAA
1 CTTCAACCTACTCCACTACAAATTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTCTACTGCAA
75715977 TTTCAGAA-AGATAAGATT
66 TTTCA-AAGAGATAAGATT
75715995 CGCCATAATG
Statistics
Matches: 526, Mismatches: 83, Indels: 49
0.80 0.13 0.07
Matches are distributed among these distances:
132 6 0.01
133 166 0.32
134 6 0.01
135 2 0.00
136 1 0.00
137 1 0.00
138 4 0.01
139 298 0.57
140 42 0.08
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (133 bp):
CTTCAACCTACTCCACTACAAATTCAGGGAGATAAGATTAGTAGCTTCAATCTGCTCTACTGCAA
TTTCAAAGAGATAAGATTTGCTATCTTTAATCTACTCCACTAAAACTTCAAGGAGATAAGACTTA
TAA
Found at i:75721634 original size:40 final size:41
Alignment explanation
Indices: 75721587--75721705 Score: 125
Period size: 40 Copynumber: 2.9 Consensus size: 41
75721577 TGTATGTTTC
* *
75721587 GAGATAGCTTCGGCTATATATTGCACTTAGTGTGC-GAATT
1 GAGATAGCTTCGGCTATATATGGCACTAAGTGTGCAGAATT
* * *
75721627 G-GAATAGCTTAGGCTATATGTGGCACTAAGTGTGCAGTATT
1 GAG-ATAGCTTCGGCTATATATGGCACTAAGTGTGCAGAATT
* *
75721668 GAGATAGCTTCGGTTTAATGTGATGGCACTAAGTGTGC
1 GAGATAGCTTCGG-CT-ATAT-ATGGCACTAAGTGTGC
75721706 GATATCGTTA
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
39 1 0.02
40 29 0.45
41 14 0.22
42 2 0.03
43 3 0.05
44 15 0.23
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (41 bp):
GAGATAGCTTCGGCTATATATGGCACTAAGTGTGCAGAATT
Found at i:75729081 original size:19 final size:18
Alignment explanation
Indices: 75729053--75729089 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
75729043 AATAAAGCAT
75729053 AAAAATATGATGATAATA
1 AAAAATATGATGATAATA
75729071 AAAAATCATGATGATAATA
1 AAAAAT-ATGATGATAATA
75729090 TGTATAATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.59, C:0.03, G:0.11, T:0.27
Consensus pattern (18 bp):
AAAAATATGATGATAATA
Found at i:75737665 original size:14 final size:14
Alignment explanation
Indices: 75737638--75737672 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
75737628 AATGTTATGT
*
75737638 ATATAAATTTTAAA
1 ATATAAATTATAAA
*
75737652 ATATATATTATAAA
1 ATATAAATTATAAA
75737666 ATATAAA
1 ATATAAA
75737673 CAATTAATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
ATATAAATTATAAA
Found at i:75740787 original size:20 final size:20
Alignment explanation
Indices: 75740729--75740789 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
75740719 CAACATTTAA
75740729 TTAA-TTTTAAAAATATTTT
1 TTAATTTTTAAAAATATTTT
*
75740748 TATACATTTTT--AAAGA-TTT
1 T-TA-ATTTTTAAAAATATTTT
75740767 TTAATTTTTAAAAATATTTT
1 TTAATTTTTAAAAATATTTT
75740787 TTA
1 TTA
75740790 TAATTTAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
17 6 0.18
18 2 0.06
19 9 0.26
20 12 0.35
21 1 0.03
22 4 0.12
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (20 bp):
TTAATTTTTAAAAATATTTT
Found at i:75740796 original size:20 final size:20
Alignment explanation
Indices: 75740734--75740800 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
75740724 TTTAATTAAT
75740734 TTTAAAAATA-TTTTTATACA
1 TTTAAAAATATTTTTTATA-A
** * * *
75740754 TTTTTAAAGATTTTTAAT-T
1 TTTAAAAATATTTTTTATAA
75740773 TTTAAAAATATTTTTTATAA
1 TTTAAAAATATTTTTTATAA
75740793 TTTAAAAA
1 TTTAAAAA
75740801 AATCAATTAA
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
19 14 0.40
20 15 0.43
21 6 0.17
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (20 bp):
TTTAAAAATATTTTTTATAA
Found at i:75744292 original size:12 final size:13
Alignment explanation
Indices: 75744269--75744297 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
75744259 GGGCTATAAC
75744269 TATTGCATTTATT
1 TATTGCATTTATT
75744282 TATTG-ATTTATT
1 TATTGCATTTATT
75744294 TATT
1 TATT
75744298 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.24, C:0.03, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:75750439 original size:12 final size:12
Alignment explanation
Indices: 75750424--75750472 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
75750414 GGTTATTTCA
*
75750424 ATTTTAATTTTG
1 ATTTCAATTTTG
75750436 ATTTCAATTTCT-
1 ATTTCAATTT-TG
*
75750448 ATTTCGATTTTG
1 ATTTCAATTTTG
*
75750460 ATTTTAATTTTG
1 ATTTCAATTTTG
75750472 A
1 A
75750473 AACACTCACT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 1 0.03
12 29 0.94
13 1 0.03
ACGTcount: A:0.24, C:0.06, G:0.08, T:0.61
Consensus pattern (12 bp):
ATTTCAATTTTG
Found at i:75750441 original size:18 final size:18
Alignment explanation
Indices: 75750418--75750472 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
75750408 ATTTAGGGTT
75750418 ATTTCAATTTTAATTTTG
1 ATTTCAATTTTAATTTTG
*
75750436 ATTTCAATTTCT-ATTTCG
1 ATTTCAATTT-TAATTTTG
**
75750454 ATTTTGATTTTAATTTTG
1 ATTTCAATTTTAATTTTG
75750472 A
1 A
75750473 AACACTCACT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 1 0.03
18 29 0.94
19 1 0.03
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.60
Consensus pattern (18 bp):
ATTTCAATTTTAATTTTG
Found at i:75750604 original size:48 final size:48
Alignment explanation
Indices: 75750551--75750668 Score: 146
Period size: 48 Copynumber: 2.5 Consensus size: 48
75750541 GCCACGTGCA
* *
75750551 TGATGTTTATTATTTGCATCTGCCACTGTATGAATGCCATTATCAAAC
1 TGATGTTTATTATGTACATCTGCCACTGTATGAATGCCATTATCAAAC
* * * * *
75750599 TGATGTTTGTTGTGTATATCTGCCATTGTATGAATGCTATTATCAAAC
1 TGATGTTTATTATGTACATCTGCCACTGTATGAATGCCATTATCAAAC
* * *
75750647 TGATGTTTGTTGTGTATATCTG
1 TGATGTTTATTATGTACATCTG
75750669 TTGTTGTTTG
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 63 1.00
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.44
Consensus pattern (48 bp):
TGATGTTTATTATGTACATCTGCCACTGTATGAATGCCATTATCAAAC
Found at i:75750780 original size:89 final size:89
Alignment explanation
Indices: 75750629--75750808 Score: 315
Period size: 89 Copynumber: 2.0 Consensus size: 89
75750619 TGCCATTGTA
* * ***
75750629 TGAATGCTATTATCAAACTGATGTTTGTTGTGTATATCTGTTGTTGTTTGTATCCAAGCTGCTAT
1 TGAATGCCATTATCAAACTAATGTTTGTTGTGTATATCTGCCATTGTTTGTATCCAAGCTGCTAT
75750694 ATTGTATGTGGCAAAATCAAAATT
66 ATTGTATGTGGCAAAATCAAAATT
75750718 TGAATGCCATTATCAAACTAATGTTTGTTGTGTATATCTGCCATTGTTTGTATCCAAGCTGCTAT
1 TGAATGCCATTATCAAACTAATGTTTGTTGTGTATATCTGCCATTGTTTGTATCCAAGCTGCTAT
75750783 ATTGTATGTGGCAAAATCAAAATT
66 ATTGTATGTGGCAAAATCAAAATT
75750807 TG
1 TG
75750809 TTATTTACCT
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 86 1.00
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (89 bp):
TGAATGCCATTATCAAACTAATGTTTGTTGTGTATATCTGCCATTGTTTGTATCCAAGCTGCTAT
ATTGTATGTGGCAAAATCAAAATT
Found at i:75753772 original size:16 final size:16
Alignment explanation
Indices: 75753751--75753784 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
75753741 AAAATCCATG
*
75753751 TAATTCATGTAACTTA
1 TAATTCATGTAAATTA
75753767 TAATTCATGTAAATTA
1 TAATTCATGTAAATTA
75753783 TA
1 TA
75753785 TAGTTCTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (16 bp):
TAATTCATGTAAATTA
Found at i:75755436 original size:28 final size:28
Alignment explanation
Indices: 75755396--75755451 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
75755386 TAAAGAGCTT
75755396 CATATGGTGCCATCTTTATACTCGTTTG
1 CATATGGTGCCATCTTTATACTCGTTTG
75755424 CATATGGTGCCATCTTTATACTCGTTTG
1 CATATGGTGCCATCTTTATACTCGTTTG
75755452 GAAACTGTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.43
Consensus pattern (28 bp):
CATATGGTGCCATCTTTATACTCGTTTG
Found at i:75761044 original size:26 final size:27
Alignment explanation
Indices: 75760994--75761045 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
75760984 CTAATTATAT
* **
75760994 AAGTATCTCATGTATCATATTATCCAC
1 AAGTATCTCATATATCATAAAATCCAC
75761021 AAGTAT-TCATATATCATAAAATCCA
1 AAGTATCTCATATATCATAAAATCCA
75761046 TGTAATTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.35
Consensus pattern (27 bp):
AAGTATCTCATATATCATAAAATCCAC
Found at i:75761296 original size:22 final size:22
Alignment explanation
Indices: 75761256--75761335 Score: 79
Period size: 23 Copynumber: 3.5 Consensus size: 22
75761246 TGAGCTGATA
* *
75761256 AACGGTAAGTTTCAAAGAGCTG
1 AACGGTAAGCTCCAAAGAGCTG
**
75761278 AACGGTAAGCTCCGTAGAGCTG
1 AACGGTAAGCTCCAAAGAGCTG
* * *
75761300 AAACAGTAAGCCCCAAAGAGCTTA
1 -AACGGTAAGCTCCAAAGAGC-TG
75761324 AACGGTAAGCTC
1 AACGGTAAGCTC
75761336 ATACGAGCTA
Statistics
Matches: 45, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
22 18 0.40
23 26 0.58
24 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.17
Consensus pattern (22 bp):
AACGGTAAGCTCCAAAGAGCTG
Found at i:75761319 original size:23 final size:23
Alignment explanation
Indices: 75761268--75761333 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 23
75761258 CGGTAAGTTT
*
75761268 CAAAGAGCTG-AACGGTAAGCTC
1 CAAAGAGCTGAAACGGTAAGCCC
** *
75761290 CGTAGAGCTGAAACAGTAAGCCC
1 CAAAGAGCTGAAACGGTAAGCCC
*
75761313 CAAAGAGCTTAAACGGTAAGC
1 CAAAGAGCTGAAACGGTAAGC
75761334 TCATACGAGC
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 8 0.23
23 27 0.77
ACGTcount: A:0.38, C:0.23, G:0.26, T:0.14
Consensus pattern (23 bp):
CAAAGAGCTGAAACGGTAAGCCC
Found at i:75761343 original size:23 final size:22
Alignment explanation
Indices: 75761255--75761344 Score: 74
Period size: 23 Copynumber: 4.0 Consensus size: 22
75761245 CTGAGCTGAT
* *
75761255 AAACGGTAAGTTTCAAAGAGCTG
1 AAACGGTAAG-CTCATAGAGCTG
*
75761278 -AACGGTAAGCTCCGTAGAGCTG
1 AAACGGTAAGCT-CATAGAGCTG
* * * *
75761300 AAACAGTAAGCCCCAAAGAGCTT
1 AAACGGTAAG-CTCATAGAGCTG
75761323 AAACGGTAAGCTCATACGAGCT
1 AAACGGTAAGCTCATA-GAGCT
75761345 ATAGTGAGTC
Statistics
Matches: 52, Mismatches: 11, Indels: 8
0.73 0.15 0.11
Matches are distributed among these distances:
21 1 0.02
22 21 0.40
23 29 0.56
24 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (22 bp):
AAACGGTAAGCTCATAGAGCTG
Found at i:75762624 original size:22 final size:22
Alignment explanation
Indices: 75762596--75762638 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
75762586 CTTTCTGATG
75762596 CCTTTATTCTGACTTCATGTTA
1 CCTTTATTCTGACTTCATGTTA
75762618 CCTTTATTCTGACTTCATGTT
1 CCTTTATTCTGACTTCATGTT
75762639 GCTAGCCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.16, C:0.23, G:0.09, T:0.51
Consensus pattern (22 bp):
CCTTTATTCTGACTTCATGTTA
Found at i:75762745 original size:29 final size:28
Alignment explanation
Indices: 75762706--75762766 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
75762696 GTGTTGACTA
* *
75762706 TTTTTTAATATGCATGCAGTGAGTATTT
1 TTTTTTAATATGCATACAGTGACTATTT
*
75762734 TTTTTATAATATGCATATAGTGACTATTT
1 TTTTT-TAATATGCATACAGTGACTATTT
75762763 TTTT
1 TTTT
75762767 GGGTGTGTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 5 0.17
29 24 0.83
ACGTcount: A:0.26, C:0.07, G:0.13, T:0.54
Consensus pattern (28 bp):
TTTTTTAATATGCATACAGTGACTATTT
Found at i:75763445 original size:21 final size:21
Alignment explanation
Indices: 75763415--75763461 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
75763405 AAGTTGATTT
*
75763415 CCCAACTCAGCAACAG-GATAC
1 CCCAAATCAGCAACAGAG-TAC
*
75763436 CCCAAATCAGCAAGAGAGTAC
1 CCCAAATCAGCAACAGAGTAC
75763457 CCCAA
1 CCCAA
75763462 CTCAACAGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.40, C:0.36, G:0.15, T:0.09
Consensus pattern (21 bp):
CCCAAATCAGCAACAGAGTAC
Found at i:75764578 original size:3 final size:3
Alignment explanation
Indices: 75764543--75764590 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
75764533 CTATTTTTCC
* * * *
75764543 TCT TCT CCT TCT CCT TCT TAT TCT TC- TCC TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
75764590 T
1 T
75764591 TTTTTTCTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.02, C:0.38, G:0.00, T:0.60
Consensus pattern (3 bp):
TCT
Found at i:75764598 original size:29 final size:29
Alignment explanation
Indices: 75764536--75764598 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
75764526 GGCATCTCTA
75764536 TTTT-TCCTCTTCTCCTTCTCCTTCTTAT
1 TTTTCTCCTCTTCTCCTTCTCCTTCTTAT
* * * *
75764564 TCTTCTCCTCTTCTTCTTCTTCTTCTTTT
1 TTTTCTCCTCTTCTCCTTCTCCTTCTTAT
75764593 TTTTCT
1 TTTTCT
75764599 AACCCTAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 3 0.10
29 26 0.90
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (29 bp):
TTTTCTCCTCTTCTCCTTCTCCTTCTTAT
Found at i:75765708 original size:26 final size:25
Alignment explanation
Indices: 75765669--75765718 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
75765659 TTTGTTTTAA
* * *
75765669 TATTTGTTTTTTATGTTTTTAAATG
1 TATTTGTTTATTATATTTTAAAATG
75765694 TATTTGATTTATTATATTTTAAAAT
1 TATTTG-TTTATTATATTTTAAAAT
75765719 TTTTATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (25 bp):
TATTTGTTTATTATATTTTAAAATG
Found at i:75766157 original size:25 final size:25
Alignment explanation
Indices: 75766124--75766177 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
75766114 AAATTGCAAG
* * *
75766124 AAAAATAAAATTTAT-TAACATAAT
1 AAAAATAAAAATTATAAAAAATAAT
75766148 AAAAATTAAAAATTATAAAAAATAAT
1 AAAAA-TAAAAATTATAAAAAATAAT
75766174 AAAA
1 AAAA
75766178 TAACCGACAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 5 0.20
25 9 0.36
26 11 0.44
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (25 bp):
AAAAATAAAAATTATAAAAAATAAT
Found at i:75766474 original size:16 final size:16
Alignment explanation
Indices: 75766453--75766520 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
75766443 TTTGGTTCGC
75766453 TGTATTGGATTAG-AG
1 TGTATTGGATTAGAAG
75766468 ATGTATTGGATTAGAAG
1 -TGTATTGGATTAGAAG
75766485 TGTATTGGATTAGAAG
1 TGTATTGGATTAGAAG
*
75766501 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAAG
75766517 TGTA
1 TGTA
75766521 ATAGCAAATC
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
16 48 0.96
17 2 0.04
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAAG
Found at i:75766844 original size:157 final size:157
Alignment explanation
Indices: 75766650--75766959 Score: 539
Period size: 157 Copynumber: 2.0 Consensus size: 157
75766640 CCCTTAGCAT
*
75766650 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
75766715 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
75766780 TTTAATAAAATTCTTAATAATTACCAG
131 TTTAATAAAATTCTTAATAATTACCAG
* * * *
75766807 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTGATAAGATTATTAATATGAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
75766872 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
75766937 TTTAATAAAATTCTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
75766960 ATATTCTTAT
Statistics
Matches: 144, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
157 144 1.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (157 bp):
AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTACCAG
Found at i:75766956 original size:82 final size:81
Alignment explanation
Indices: 75766713--75766962 Score: 186
Period size: 76 Copynumber: 3.1 Consensus size: 81
75766703 TATTATTATC
* * *
75766713 AATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTAT-ATTAAAATATAT
75766778 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
* * * * *
75766795 AATAATTACCAGA-AATTT-GT--T-TTGGT-AA-ATTATTATTGTT--AT-TGTTAT-TTAAAT
1 AATAA-TA--A-ATAATTTAATCATATT--TAAACATAATTATTATTAAATATATTATATTAAAA
* * * * *
75766849 TTTGATAAGATT-AT-TAA-TATG
60 TAT-ATAA-TTTAATAAAATTCTT
75766870 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATA-TTAAAATATAT
75766935 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
*
75766952 AATAATTAATA
1 AATAATAAATA
75766963 TTCTTATATG
Statistics
Matches: 121, Mismatches: 24, Indels: 46
0.63 0.13 0.24
Matches are distributed among these distances:
71 1 0.01
72 6 0.05
73 1 0.01
74 3 0.02
75 10 0.08
76 21 0.17
77 6 0.05
78 8 0.07
79 8 0.07
80 6 0.05
81 21 0.17
82 20 0.17
83 3 0.02
84 1 0.01
85 5 0.04
86 1 0.01
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (81 bp):
AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATATTAAAATATATA
ATTTAATAAAATTCTT
Found at i:75768439 original size:19 final size:21
Alignment explanation
Indices: 75768398--75768459 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
75768388 TTCCTTATCG
*
75768398 TATTTTTTTTACTCTTTTATA
1 TATTTTATTTACTCTTTTATA
*
75768419 TATTTTATTTCCTCTTTTATA
1 TATTTTATTTACTCTTTTATA
*
75768440 T-TTTTATTTATTTCTTTTAT
1 TATTTTATTTA-CTCTTTTAT
75768460 CGTTGTTGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.22
21 28 0.78
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.73
Consensus pattern (21 bp):
TATTTTATTTACTCTTTTATA
Found at i:75768711 original size:3 final size:3
Alignment explanation
Indices: 75768703--75768733 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
75768693 CTGACACATT
75768703 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
75768734 ATTTTCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:75768789 original size:74 final size:67
Alignment explanation
Indices: 75768710--75768875 Score: 156
Period size: 74 Copynumber: 2.4 Consensus size: 67
75768700 ATTTTATTAT
75768710 TATTATTATTATTATTATTATTATATTTTCTT-TTTACTTATGTGGTATGGTTATTATTATATAA
1 TATTATTATTATTATTATTATTATATTTT-TTATTTACTTA------ATGGTTATTATTAT-TAA
75768774 ACCAATTTAA
58 ACCAATTTAA
* * * * * * * *
75768784 TATTATTATTGTCACTATTATTTTCTTTTTTATTTACTTACTGGTTATTATTATTAGACTAATTT
1 TATTATTATTATTATTATTATTATATTTTTTATTTACTTAATGGTTATTATTATTAAACCAATTT
*
75768849 GA
66 AA
*
75768851 TA-TATTATTACTATTATTATTATAT
1 TATTATTATTATTATTATTATTATAT
75768876 CCCTATTTAT
Statistics
Matches: 76, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
66 17 0.22
67 12 0.16
68 13 0.17
73 2 0.03
74 32 0.42
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.58
Consensus pattern (67 bp):
TATTATTATTATTATTATTATTATATTTTTTATTTACTTAATGGTTATTATTATTAAACCAATTT
AA
Found at i:75775122 original size:3 final size:3
Alignment explanation
Indices: 75775102--75775147 Score: 74
Period size: 3 Copynumber: 15.0 Consensus size: 3
75775092 CAAGCATTAG
*
75775102 ATT ATTT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
75775148 CACATTATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:75782868 original size:3 final size:3
Alignment explanation
Indices: 75782860--75783065 Score: 50
Period size: 3 Copynumber: 67.3 Consensus size: 3
75782850 ATTGCTTTGG
* * * * *
75782860 TTA TTA TTA TTA TTT TTA TTA TT- TTG TTA ATA ATA TTA TTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
75782907 -CA CTA -TA TT- TTA TCTA TTTA TTCA TT- TCA TTA TTAA TCCA TTA
1 TTA TTA TTA TTA TTA T-TA -TTA TT-A TTA TTA TTA TT-A T-TA TTA
* * * * *
75782950 -TA TTA TCA TTA CTA ATA -TA TTC TTA TTA TTT TTA TTAA TGTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A T-TA TTA
* * * * * * *
75782995 TTA TCTG TTGC TCTA CTTT TTA TTG CTA TTA TCA TTA CTA -TA TTTA
1 TTA T-TA TT-A T-TA -TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
*
75783041 TTA TTA TTA TTA TTA TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
75783066 ATAGTAGTGT
Statistics
Matches: 148, Mismatches: 35, Indels: 40
0.66 0.16 0.18
Matches are distributed among these distances:
2 14 0.09
3 109 0.74
4 21 0.14
5 4 0.03
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:75783406 original size:3 final size:3
Alignment explanation
Indices: 75783400--75783468 Score: 54
Period size: 3 Copynumber: 24.0 Consensus size: 3
75783390 TTATTTAATG
* * * * * *
75783400 TAT TAT TTT TAT TAC TAT CAA TAC TAT TAT TAT TA- TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
75783447 TAC TAT TA- TAT TAT T-T TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
75783469 CTTTACCTAT
Statistics
Matches: 50, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
2 6 0.12
3 44 0.88
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:75783453 original size:20 final size:19
Alignment explanation
Indices: 75783424--75783467 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
75783414 CTATCAATAC
* *
75783424 TATTATTATTATATTGTTAT
1 TATTACTATTATATTATT-T
75783444 TATTACTATTATATTATTT
1 TATTACTATTATATTATTT
75783463 TATTA
1 TATTA
75783468 TCTTTACCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (19 bp):
TATTACTATTATATTATTT
Found at i:75786464 original size:16 final size:16
Alignment explanation
Indices: 75786445--75786475 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75786435 GTCGAAATGC
75786445 CGAAATGCCGAAAAGT
1 CGAAATGCCGAAAAGT
*
75786461 CGAAATGTCGAAAAG
1 CGAAATGCCGAAAAG
75786476 CTGAAAGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.16, G:0.26, T:0.13
Consensus pattern (16 bp):
CGAAATGCCGAAAAGT
Found at i:75786481 original size:16 final size:16
Alignment explanation
Indices: 75786435--75786481 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
75786425 ATCGGCAAAA
* *
75786435 GTCGAAATGCCGAAAT
1 GTCGAAAAGCTGAAAT
*
75786451 GCCGAAAAG-TCGAAAT
1 GTCGAAAAGCT-GAAAT
75786467 GTCGAAAAGCTGAAA
1 GTCGAAAAGCTGAAA
75786482 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 24 0.96
17 1 0.04
ACGTcount: A:0.43, C:0.17, G:0.26, T:0.15
Consensus pattern (16 bp):
GTCGAAAAGCTGAAAT
Found at i:75786481 original size:24 final size:24
Alignment explanation
Indices: 75786431--75786481 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
75786421 ATGAATCGGC
*
75786431 AAAAGTCGAAATGCCGAAATGCCG
1 AAAAGTCGAAATGCCGAAAAGCCG
* *
75786455 AAAAGTCGAAATGTCGAAAAGCTG
1 AAAAGTCGAAATGCCGAAAAGCCG
75786479 AAA
1 AAA
75786482 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.16, G:0.24, T:0.14
Consensus pattern (24 bp):
AAAAGTCGAAATGCCGAAAAGCCG
Found at i:75786751 original size:29 final size:29
Alignment explanation
Indices: 75786717--75786800 Score: 93
Period size: 29 Copynumber: 2.9 Consensus size: 29
75786707 GGTCTAACGA
75786717 GCCATATAAATGTGATTTGGGCCTAATGG
1 GCCATATAAATGTGATTTGGGCCTAATGG
75786746 GCCATATACAA-GTGATTT-GGCCATAATGG
1 GCCATATA-AATGTGATTTGGGCC-TAATGG
* * * *
75786775 GCCGTATGAATATGA-TTGGGCTTAAT
1 GCCATATAAATGTGATTTGGGCCTAAT
75786801 AGGCAAGATA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
28 12 0.26
29 33 0.70
30 2 0.04
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (29 bp):
GCCATATAAATGTGATTTGGGCCTAATGG
Found at i:75794382 original size:15 final size:15
Alignment explanation
Indices: 75794346--75794383 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
75794336 AGGATAAGGT
*
75794346 CAAGTTCATTAGAGA
1 CAAGTTGATTAGAGA
75794361 CAAGTTGATTAGAGA
1 CAAGTTGATTAGAGA
*
75794376 CCAGTTGA
1 CAAGTTGA
75794384 AGGAAGCATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (15 bp):
CAAGTTGATTAGAGA
Found at i:75799943 original size:138 final size:138
Alignment explanation
Indices: 75799690--75799960 Score: 400
Period size: 138 Copynumber: 2.0 Consensus size: 138
75799680 CAAATACTCA
* * **
75799690 ATCATAGTCCATTCAATGTCTTTAATTGTAGCCTTTTGCAACTAATATTGCTTTGTATTTTTTGA
1 ATCATAGTCCACTCAATGTCTTTAATTGTAGCCCTTTGCAACTAATATTGCTTTGTATTTTCCGA
* * **
75799755 CTTTTCCTTCTTTGTTAGTCTTTGTCTTGTACACCCATTTGACTTTAATTGGACTATGTCCTTCT
66 CTTTTCCTTCTTAGTTAGTCTTTATCTTGTACACCCATTTGACTCCAATTGGACTATGTCCTTCT
75799820 GGTCCTTC
131 GGTCCTTC
* * * *
75799828 ATCATAGTCCACTCTATGTCTTTACTTGTAGCCCTTTGCAACTAGTCTTGCTTTGTATTTCTCCG
1 ATCATAGTCCACTCAATGTCTTTAATTGTAGCCCTTTGCAACTAATATTGCTTTGTATTT-TCCG
* *
75799893 -CTTTTCCTTCTTAGTTAGTCTTTATCTTGTACACCTATTTGACTCCAATTGGACTATGTCTTTC
65 ACTTTTCCTTCTTAGTTAGTCTTTATCTTGTACACCCATTTGACTCCAATTGGACTATGTCCTTC
75799957 TGGT
130 TGGT
75799961 AGACTTGTTA
Statistics
Matches: 118, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
138 116 0.98
139 2 0.02
ACGTcount: A:0.17, C:0.22, G:0.13, T:0.47
Consensus pattern (138 bp):
ATCATAGTCCACTCAATGTCTTTAATTGTAGCCCTTTGCAACTAATATTGCTTTGTATTTTCCGA
CTTTTCCTTCTTAGTTAGTCTTTATCTTGTACACCCATTTGACTCCAATTGGACTATGTCCTTCT
GGTCCTTC
Found at i:75800960 original size:14 final size:14
Alignment explanation
Indices: 75800941--75800992 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 14
75800931 TTCTTTAACT
75800941 TTTTTTTCTTTTTC
1 TTTTTTTCTTTTTC
75800955 TTTTTTTCTTCTTTCAC
1 TTTTTTTCTT-TTT--C
*
75800972 ATTTCTTCTCTTTTTC
1 -TTT-TTTTCTTTTTC
75800988 TTTTT
1 TTTTT
75800993 GTTTGCTTCC
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
14 12 0.38
15 6 0.19
16 1 0.03
17 1 0.03
18 6 0.19
19 6 0.19
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTTTTCTTTTTC
Found at i:75800965 original size:32 final size:33
Alignment explanation
Indices: 75800929--75800992 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
75800919 TTAAAAACCA
* *
75800929 TCTTCTTTAAC-TTTTTTTTCTTTTTCTTTTTT
1 TCTTCTTTAACATTTCTTCTCTTTTTCTTTTTT
*
75800961 TCTTCTTTCACATTTCTTCTCTTTTTCTTTTT
1 TCTTCTTTAACATTTCTTCTCTTTTTCTTTTT
75800993 GTTTGCTTCC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 10 0.36
33 18 0.64
ACGTcount: A:0.06, C:0.20, G:0.00, T:0.73
Consensus pattern (33 bp):
TCTTCTTTAACATTTCTTCTCTTTTTCTTTTTT
Found at i:75810200 original size:13 final size:14
Alignment explanation
Indices: 75810182--75810210 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
75810172 AATTGATTTA
75810182 AAGGTTAA-TTAGT
1 AAGGTTAACTTAGT
75810195 AAGGTTAACTTAGT
1 AAGGTTAACTTAGT
75810209 AA
1 AA
75810211 ACTAGTAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.34
Consensus pattern (14 bp):
AAGGTTAACTTAGT
Found at i:75810423 original size:5 final size:5
Alignment explanation
Indices: 75810413--75810439 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
75810403 TGAGCATTTG
75810413 ATCGA ATCGA ATCGA ATCGA ATCGA AT
1 ATCGA ATCGA ATCGA ATCGA ATCGA AT
75810440 GAAATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (5 bp):
ATCGA
Found at i:75812373 original size:29 final size:28
Alignment explanation
Indices: 75812330--75812384 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
75812320 GAGTTATACC
*
75812330 GATTTGGCTTTGGGCCATGAATATCAGCT
1 GATTTGGCTTCGGGCCATG-ATATCAGCT
75812359 GATTTGGCTTCGGGCCATGATATCAG
1 GATTTGGCTTCGGGCCATGATATCAG
75812385 TATTTCGGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.33
Consensus pattern (28 bp):
GATTTGGCTTCGGGCCATGATATCAGCT
Found at i:75820069 original size:40 final size:39
Alignment explanation
Indices: 75820025--75820208 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 39
75820015 GCTACTCGTT
*
75820025 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCACA
* * *
75820065 CAAATACCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGG-TTATAGTAACTCACA
* * * *
75820105 CAAATGCCTTCGGGCTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTA-TAGTAACTCACA
* * * * *
75820144 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGTTATAGTAACTCA-CA
75820185 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG
75820209 GCATCATTCA
Statistics
Matches: 118, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
39 35 0.30
40 71 0.60
41 12 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:75820127 original size:79 final size:77
Alignment explanation
Indices: 75819990--75820208 Score: 201
Period size: 79 Copynumber: 2.8 Consensus size: 77
75819980 CCAAATCACG
* * ** * * *
75819990 TACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCAGGACATAGCCCGG-TTAT
1 TACCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTC-GGGCTTAGCCCGGAAT-T
75820054 AGTAACTCACACAAA
63 AGTAACTCACACAAA
*
75820069 TACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTA
1 TACCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTA
* *
75820134 GTATCTCGCACAAA
64 GTAACTCACACAAA
* * * *
75820148 TGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 TACCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGG-CTTAGCCCGG
75820209 GCATCATTCA
Statistics
Matches: 117, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.03
79 70 0.60
80 44 0.38
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (77 bp):
TACCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGT
AACTCACACAAA
Found at i:75825090 original size:93 final size:93
Alignment explanation
Indices: 75824874--75825092 Score: 359
Period size: 93 Copynumber: 2.3 Consensus size: 93
75824864 AGGTTTTTGA
* *
75824874 CCCACACAGCCTGGACACACGGGCGTGTCCTAGGCCGTGTGACTTAACATGGGCGCGATAATAGG
1 CCCACACGGCCTGGACACAC-GGCGTGTCCTAGGCCGTGTGACTTAACATGGGCACGATAATAGG
**
75824939 TTCCACGGTTGTGTGATATAGCCATGTAC
65 TTCCACGGTCATGTGATATAGCCATGTAC
*
75824968 CCCACACGGCCTGGACACACGGCCATGTCCTAGGCCGTGTGACTTAACAT-GGCACGATAATAGG
1 CCCACACGGCCTGGACACACGG-CGTGTCCTAGGCCGTGTGACTTAACATGGGCACGATAATAGG
75825032 TTCCACGGTCATGTGATATAGCCATGTAC
65 TTCCACGGTCATGTGATATAGCCATGTAC
75825061 CCCACACGGCCTGGACACACAGGCGTGTCCTA
1 CCCACACGGCCTGGACACAC-GGCGTGTCCTA
75825093 AGTTGTTTAA
Statistics
Matches: 117, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
93 70 0.60
94 47 0.40
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (93 bp):
CCCACACGGCCTGGACACACGGCGTGTCCTAGGCCGTGTGACTTAACATGGGCACGATAATAGGT
TCCACGGTCATGTGATATAGCCATGTAC
Found at i:75825988 original size:7 final size:7
Alignment explanation
Indices: 75825978--75826027 Score: 57
Period size: 7 Copynumber: 7.0 Consensus size: 7
75825968 CCTTATTAGC
75825978 ATTATTT
1 ATTATTT
75825985 ATTATTT
1 ATTATTT
75825992 ATTATTT
1 ATTATTT
75825999 ATT-TTT
1 ATTATTT
75826005 ATTTATTT
1 A-TTATTT
*
75826013 CTTATGTT
1 ATTAT-TT
*
75826021 ACTATTT
1 ATTATTT
75826028 CTCTATTACT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
6 4 0.11
7 25 0.68
8 8 0.22
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (7 bp):
ATTATTT
Found at i:75827692 original size:6 final size:6
Alignment explanation
Indices: 75827613--75827675 Score: 99
Period size: 6 Copynumber: 10.5 Consensus size: 6
75827603 ATTGAGTCCA
* * *
75827613 TTTATC TTTATG TTTATT TTTATT TTTATC TTTATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
75827661 TTTATT TTTATT TTT
1 TTTATT TTTATT TTT
75827676 CTTATTTTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 53 1.00
ACGTcount: A:0.16, C:0.03, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:75838251 original size:20 final size:21
Alignment explanation
Indices: 75838208--75838251 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
75838198 AAACATAATA
*
75838208 ATAGTATTACAAAGTATATAC
1 ATAGTATTACAAAATATATAC
*
75838229 ATAGTATTA-AAAATATGTAC
1 ATAGTATTACAAAATATATAC
75838249 ATA
1 ATA
75838252 ATATGGCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (21 bp):
ATAGTATTACAAAATATATAC
Found at i:75838289 original size:26 final size:26
Alignment explanation
Indices: 75838229--75838320 Score: 75
Period size: 26 Copynumber: 3.6 Consensus size: 26
75838219 AAGTATATAC
**
75838229 ATAGTATT-AAAAATATGTACATAAT
1 ATAGTATTAAAAAATACATACATAAT
* **
75838254 ATGGCGTTAAAAAATACATACATAAT
1 ATAGTATTAAAAAATACATACATAAT
* *
75838280 ATAGTATTAAATATATACATAAGATAAT
1 ATAGTATTAAA-AAATACAT-ACATAAT
75838308 AT-GTA--AAAAAATA
1 ATAGTATTAAAAAATA
75838321 TAATATAGTA
Statistics
Matches: 53, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
24 4 0.08
25 8 0.15
26 23 0.43
27 10 0.19
28 8 0.15
ACGTcount: A:0.54, C:0.05, G:0.09, T:0.32
Consensus pattern (26 bp):
ATAGTATTAAAAAATACATACATAAT
Found at i:75838366 original size:45 final size:46
Alignment explanation
Indices: 75838263--75838366 Score: 110
Period size: 45 Copynumber: 2.3 Consensus size: 46
75838253 TATGGCGTTA
*
75838263 AAAAATACATACATAATATAGTATTAAATATATACATAAGATAATATG
1 AAAAATACA-ATATAATATAGTATTAAATATATA-ATAAGATAATATG
* *
75838311 TAAAA-A-AATATAATATAGTATTCGAAATATAT-ATATGAT-ATAT-
1 AAAAATACAATATAATATAGTATT--AAATATATAATAAGATAATATG
75838354 AAAAATACAATAT
1 AAAAATACAATAT
75838367 TAAAAGGCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
43 4 0.08
44 5 0.10
45 25 0.52
46 1 0.02
47 9 0.19
48 4 0.08
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.33
Consensus pattern (46 bp):
AAAAATACAATATAATATAGTATTAAATATATAATAAGATAATATG
Found at i:75838411 original size:24 final size:24
Alignment explanation
Indices: 75838375--75838523 Score: 88
Period size: 24 Copynumber: 6.5 Consensus size: 24
75838365 ATTAAAAGGC
*
75838375 ATATATACGTAATATATATATAAA
1 ATATATACATAATATATATATAAA
*
75838399 ATGTATACATAATATAGTAT-TAAA
1 ATATATACATAATATA-TATATAAA
* *
75838423 ATATTTACATAGATATACATATTAGAA
1 ATATATACATA-ATATATATA-TA-AA
* *
75838450 ATA-ATA-ATAATGT-TA-AAAACA
1 ATATATACATAATATATATATAA-A
*
75838471 ACTAT-TA-ATAATAT-TACAT-AA
1 A-TATATACATAATATATATATAAA
*
75838492 ATATATACAT-ATATAT-TA-AAG
1 ATATATACATAATATATATATAAA
75838513 ATATATACATA
1 ATATATACATA
75838524 TAATAAAACA
Statistics
Matches: 98, Mismatches: 13, Indels: 30
0.70 0.09 0.21
Matches are distributed among these distances:
20 4 0.04
21 23 0.23
22 17 0.17
23 2 0.02
24 32 0.33
25 11 0.11
26 4 0.04
27 5 0.05
ACGTcount: A:0.53, C:0.06, G:0.05, T:0.36
Consensus pattern (24 bp):
ATATATACATAATATATATATAAA
Found at i:75838599 original size:24 final size:24
Alignment explanation
Indices: 75838562--75838629 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 24
75838552 AATAATAAGG
*
75838562 ATAATAT-AAAATATATACATGAA
1 ATAATATAAAAATATATACATCAA
* * * *
75838585 ATAGTATAAAAATATATATAACTA
1 ATAATATAAAAATATATACATCAA
*
75838609 ATAATATTAAAATATATACAT
1 ATAATATAAAAATATATACAT
75838630 AATATTTATA
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 6 0.17
24 29 0.83
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (24 bp):
ATAATATAAAAATATATACATCAA
Found at i:75838641 original size:22 final size:23
Alignment explanation
Indices: 75838562--75838659 Score: 85
Period size: 22 Copynumber: 4.1 Consensus size: 23
75838552 AATAATAAGG
75838562 ATAATATAAAATATATACATGAA-
1 ATAATATAAAATATATACAT-AAT
* *
75838585 ATAGTATAAAA-ATATATATAACT
1 ATAATATAAAATATATACATAA-T
75838608 AATAATATTAAAATATATACATAAT
1 -ATAATA-TAAAATATATACATAAT
* *
75838633 AT-TTATAAAACATATACGATATAT
1 ATAATATAAAATATATAC-ATA-AT
75838657 ATA
1 ATA
75838660 TACATTAGAA
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
21 2 0.03
22 18 0.30
23 15 0.25
24 11 0.18
25 6 0.10
26 9 0.15
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (23 bp):
ATAATATAAAATATATACATAAT
Found at i:75838801 original size:24 final size:24
Alignment explanation
Indices: 75838773--75838849 Score: 83
Period size: 24 Copynumber: 3.3 Consensus size: 24
75838763 ATAATATTAG
75838773 AAATATATACATAAAATAGTATAA
1 AAATATATACATAAAATAGTATAA
*
75838797 AAATATATA-ACT--AAT-GATATTA
1 AAATATATACA-TAAAATAG-TATAA
75838819 AAATATATACATAATAATA-TATAA
1 AAATATATACATAA-AATAGTATAA
75838843 AAATATA
1 AAATATA
75838850 ATATTAAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
21 1 0.02
22 17 0.39
23 2 0.05
24 21 0.48
25 3 0.07
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (24 bp):
AAATATATACATAAAATAGTATAA
Found at i:75838802 original size:22 final size:23
Alignment explanation
Indices: 75838728--75838849 Score: 83
Period size: 22 Copynumber: 5.2 Consensus size: 23
75838718 ACGTATATAT
* * *
75838728 ATATAAATAATAATGGTATTAGAA
1 ATATACATAATAATAGTA-TAAAA
* * * *
75838752 ATATTCAATATATAATATTAGAAAT
1 ATATAC-ATA-ATAATAGTATAAAA
75838777 ATATACATAA-AATAGTATAAAA
1 ATATACATAATAATAGTATAAAA
75838799 ATAT--ATAACTAAT-GATATTAAAA
1 ATATACATAA-TAATAG-TA-TAAAA
75838822 TATATACATAATAATA-TATAAAA
1 -ATATACATAATAATAGTATAAAA
75838845 ATATA
1 ATATA
75838850 ATATTAAAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
20 4 0.05
21 1 0.01
22 23 0.30
23 11 0.14
24 13 0.17
25 14 0.18
26 11 0.14
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATACATAATAATAGTATAAAA
Found at i:75838852 original size:18 final size:16
Alignment explanation
Indices: 75838832--75838865 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
75838822 TATATACATA
*
75838832 ATAATA-TATAAAAAT
1 ATAATATTAAAAAAAT
75838847 ATAATATTAAAAAAAT
1 ATAATATTAAAAAAAT
75838863 ATA
1 ATA
75838866 TGTATATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAATATTAAAAAAAT
Found at i:75838899 original size:25 final size:27
Alignment explanation
Indices: 75838850--75838912 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 27
75838840 TAAAAATATA
*
75838850 ATATTAAAAAAATATATGTATATAACAT
1 ATATT-AAAAAATATATGTACATAACAT
75838878 ATATTAAAAAATATAT-T-CATAACAT
1 ATATTAAAAAATATATGTACATAACAT
75838903 AGTATTAAAA
1 A-TATTAAAA
75838913 TATTTACATA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
25 8 0.24
26 9 0.27
27 11 0.33
28 5 0.15
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (27 bp):
ATATTAAAAAATATATGTACATAACAT
Found at i:75838922 original size:24 final size:24
Alignment explanation
Indices: 75838857--75838929 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 24
75838847 ATAATATTAA
*
75838857 AAAAATATATGTATATAACATATATT
1 AAAAATATAT-T-CATAACATATATT
75838883 AAAAAATATATTCATAACATAGTATT
1 -AAAAATATATTCATAACATA-TATT
*
75838909 -AAAATAT-TTACATAATATATA
1 AAAAATATATT-CATAACATATA
75838930 CCTATTAGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
23 4 0.10
24 15 0.36
25 8 0.19
26 5 0.12
27 10 0.24
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (24 bp):
AAAAATATATTCATAACATATATT
Found at i:75839028 original size:18 final size:19
Alignment explanation
Indices: 75838995--75839054 Score: 70
Period size: 18 Copynumber: 3.2 Consensus size: 19
75838985 TTTATTAAAG
75838995 ATATATACATATATAATAA-A
1 ATATATAC-TA-ATAATAATA
75839015 ATATATACTAATAATAATA
1 ATATATACTAATAATAATA
* *
75839034 ACA-ATAATAATAATAATA
1 ATATATACTAATAATAATA
75839052 ATA
1 ATA
75839055 ATAAACAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
18 23 0.64
19 5 0.14
20 8 0.22
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
ATATATACTAATAATAATA
Found at i:75839029 original size:3 final size:3
Alignment explanation
Indices: 75839007--75839058 Score: 70
Period size: 3 Copynumber: 17.3 Consensus size: 3
75838997 ATATACATAT
* *
75839007 ATA ATA A-A ATA TATA CTA ATA ATA ATA ACA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
75839052 ATA ATA A
1 ATA ATA A
75839059 ACAAAAAGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 38 0.88
4 3 0.07
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:75840634 original size:21 final size:21
Alignment explanation
Indices: 75840609--75840662 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
75840599 AAGATAAGAT
**
75840609 CTGCAACTTCAATGTGCTCCA
1 CTGCAACTTCAATCAGCTCCA
*
75840630 CTGCAACTTCGATCAGCTCCA
1 CTGCAACTTCAATCAGCTCCA
*
75840651 CTACAACTTCAA
1 CTGCAACTTCAA
75840663 GGAGGCAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.28, C:0.35, G:0.11, T:0.26
Consensus pattern (21 bp):
CTGCAACTTCAATCAGCTCCA
Found at i:75840863 original size:13 final size:14
Alignment explanation
Indices: 75840842--75840878 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
75840832 GCGTTGTTTT
75840842 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
75840856 TT-AAAAACAGAAT
1 TTGAAAAACAGAAA
75840869 TTGAAAAACA
1 TTGAAAAACA
75840879 AATTTTGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.62, C:0.08, G:0.11, T:0.19
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:75840882 original size:13 final size:14
Alignment explanation
Indices: 75840841--75840889 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
75840831 TGCGTTGTTT
75840841 TTTGAAAAACAGAA
1 TTTGAAAAACAGAA
*
75840855 ATT-AAAAACAGAA
1 TTTGAAAAACAGAA
75840868 TTTGAAAAACA-AA
1 TTTGAAAAACAGAA
75840881 TTTTGAAAA
1 -TTTGAAAA
75840890 TACCTCGGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 14 0.45
14 17 0.55
ACGTcount: A:0.59, C:0.06, G:0.10, T:0.24
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:75841021 original size:88 final size:88
Alignment explanation
Indices: 75840859--75841308 Score: 593
Period size: 88 Copynumber: 5.2 Consensus size: 88
75840849 ACAGAAATTA
*
75840859 AAAACAGAATTTGAAAAACA-AATTTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACC
1 AAAACAGAAATT-AAAAACAGAA-TTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACC
*
75840923 TCTCGAAATATGAGTTGATTTTTGG
64 TCTCGCAATATGAGTTGATTTTTGG
*
75840948 AAAATAGAAATTAAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTC
1 AAAACAGAAATTAAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTC
* *
75841013 TCGTAATATGAGTTGATTTTTTTG
66 TCGCAATATGAGTTGA-TTTTTGG
* * *
75841037 AAAAGCAGAAATT---GA-A-AA---G-AAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCT
1 AAAA-CAGAAATTAAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCT
* * * *
75841091 CTCACAATATGCGTTGTTTTTTTGC
65 CTCGCAATATGAGTTG-ATTTTTGG
* * **
75841116 TAAATAGAAATTAAAAACAGAATTTGAAAATACCTCGGCATGTGACCTAAGGCTCAACTCACCTC
1 AAAACAGAAATTAAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTC
*
75841181 TCGCAATATGAGTTGATTTTTGA
66 TCGCAATATGAGTTGATTTTTGG
75841204 AAAACAGAAATTAAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTC
1 AAAACAGAAATTAAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTC
75841269 TCGCAATATGAGTTGATTTTT-G
66 TCGCAATATGAGTTGATTTTTGG
*
75841291 AAGAACAGAAATTGAAAA
1 AA-AACAGAAATTAAAAA
75841309 TACCTCAACG
Statistics
Matches: 314, Mismatches: 31, Indels: 33
0.83 0.08 0.09
Matches are distributed among these distances:
78 7 0.02
79 43 0.14
81 12 0.04
82 2 0.01
83 2 0.01
85 2 0.01
86 2 0.01
87 14 0.04
88 167 0.53
89 56 0.18
90 7 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (88 bp):
AAAACAGAAATTAAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTGG
Found at i:75841100 original size:79 final size:79
Alignment explanation
Indices: 75840975--75841461 Score: 433
Period size: 88 Copynumber: 6.0 Consensus size: 79
75840965 CAGAATTTGA
* *
75840975 AAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAA
1 AAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
*
75841040 AGCAGAAATTGAAAAG
65 A-CAGAAATTAAAAAG
* * * *
75841056 AAATACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTCACAATATGCGTTG-TTTTTTTGCTAA
1 AAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAA
*
75841119 ATAGAAATTAAAAACAGAATTTG
65 ACAGAAATT---AA-A-AA---G
* **
75841142 AAAATACCTCGGCATGTGACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAA
1 -AAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-A
75841205 AAACAGAAATTAAAAACAGAATTTG
63 AAACAGAAATT---AA-A-AA---G
*
75841230 AAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAA
1 -AAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
*
75841293 GAACAGAAATT---GA-
64 -AACAGAAATTAAAAAG
* * *
75841306 AAATACCTCAAC-GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
1 AAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
*
75841370 GCAGAAATTGAAAAG
66 -CAGAAATTAAAAAG
* * * * * *
75841385 AAATACCTTAGCA-TGTCCCGAGGCTCAACTCACTTTTCACAATATGCGTTG-TTTTTTTGAAAA
1 AAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAA
75841448 ACAGAAATTAAAAA
65 ACAGAAATTAAAAA
75841462 CAGAATTTGA
Statistics
Matches: 350, Mismatches: 33, Indels: 49
0.81 0.08 0.11
Matches are distributed among these distances:
73 38 0.11
74 2 0.01
75 26 0.07
78 36 0.10
79 85 0.24
80 1 0.00
81 12 0.03
82 1 0.00
83 2 0.01
86 1 0.00
87 13 0.04
88 99 0.28
89 34 0.10
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.28
Consensus pattern (79 bp):
AAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
CAGAAATTAAAAAG
Found at i:75841365 original size:75 final size:74
Alignment explanation
Indices: 75841217--75841461 Score: 271
Period size: 79 Copynumber: 3.2 Consensus size: 74
75841207 ACAGAAATTA
* * * *
75841217 AAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTC--AACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
75841282 TGA--TTTTTG
64 TGATTTTTTTG
*
75841291 AAGAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AA-AACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
75841356 GATTTTTTTG
65 GATTTTTTTG
* * * * * *
75841366 AAAAGCAGAAATTGAAAAGAAATACCTTAGCATGTCCCGAGGCTCAACTCACTTTTCACAATATG
1 AAAA-CAGAAATTG---A-AAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
75841431 CGTTG-TTTTTTTG
61 AGTTGATTTTTTTG
*
75841444 AAAAACAGAAATTAAAAA
1 -AAAACAGAAATTGAAAA
75841462 CAGAATTTGA
Statistics
Matches: 148, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
73 39 0.26
74 7 0.05
75 38 0.26
78 17 0.11
79 47 0.32
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (74 bp):
AAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTG
Found at i:75841462 original size:13 final size:14
Alignment explanation
Indices: 75841441--75841477 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
75841431 CGTTGTTTTT
75841441 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
75841455 TT-AAAAACAGAAT
1 TTGAAAAACAGAAA
75841468 TTGAAAAACA
1 TTGAAAAACA
75841478 AATTTTGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.62, C:0.08, G:0.11, T:0.19
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:75841481 original size:13 final size:14
Alignment explanation
Indices: 75841440--75841488 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
75841430 GCGTTGTTTT
75841440 TTTGAAAAACAGAA
1 TTTGAAAAACAGAA
*
75841454 ATT-AAAAACAGAA
1 TTTGAAAAACAGAA
75841467 TTTGAAAAACA-AA
1 TTTGAAAAACAGAA
75841480 TTTTGAAAA
1 -TTTGAAAA
75841489 TACCTCGGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 14 0.45
14 17 0.55
ACGTcount: A:0.59, C:0.06, G:0.10, T:0.24
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:75841603 original size:430 final size:430
Alignment explanation
Indices: 75841076--75842314 Score: 1506
Period size: 430 Copynumber: 2.9 Consensus size: 430
75841066 GCGTGTCCCG
* * * **
75841076 AGGCTCAACTCACCTCTCACAATATGCGTTGTTTTTTTGCTAAATAGAAATTAAAAACAGAATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTGAAAAATAGAAATTAAAAACAGAATTT
*
75841141 GAAAATACCTCGGCATGTGACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
65 GAAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
* *
75841206 AACAGAAATTAAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTC
130 AACAGAAATT---AACAGAA-TTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTC
* *
75841271 GCAATATGAGTTGA-TTTTTGAAGAA-CAGAAATTG-A-AAATACCTCAACGTGTCCTGAGGCTC
189 GCAATATGAGTTGATTTTTTGAA-AAGCAGAAATTGAAGAAATACCTCAGCGTGTCCCGAGGCTC
*
75841332 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAA-G-AAATACCTTA
253 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATGAAAATACCTCA
* * **
75841395 GCATGT-CCCGAGGCTCAACTCACTTTTCACAATATG-CGTTGTTTTTTTGAAAAACAGAAATTA
318 GCATGTACCCGAGGCTCAACTCACCTCTCACAATATGAC-TT-AATTTTTGAAAAACAGAAATTA
*
75841458 AAAACAGAATTTGAAAAAC-AAATTTTGAAAATACCTCGGCATGTGACCCA
381 AAAACAGAATTTGAAAAACAAAATTTT-AAAAAACCTCGGCATGTGACCCA
* *
75841508 AGGCTCAACTCACC-CTCGCAATATGAGTTGGTTTTTGAAAAATATAAATTAAAAACAGAATTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAACAGAATTTG
* *
75841572 AAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGA
66 AAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
*
75841637 ACAG--------A-AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
131 ACAGAAATTAACAGAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
*
75841693 GAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAGAAATACCTCAGTGTGTCCCGAGGCTCAACTC
196 GAGTTGA-TTTTTTGAAAAGCAGAAATTG--AAGAAATACCTCAGCGTGTCCCGAGGCTCAACTC
* * * ** *
75841758 ACATCTCACAATATGCGTTG-TTTTTTTGAAAAAAAGAAATTAAAAACAGATTTTGAAAATACCT
258 ACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATT--GAA-A-A---TGAAAATACCT
*
75841822 CAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGACTTAATTTTTGAAAAACAGAAATT
316 CAGCATGT-ACCCGAGGCTCAACTCACCTCTCACAATATGACTTAATTTTTGAAAAACAGAAATT
* *
75841887 AAAAATAGAATTTGAAAAACAAAATTTTAAAAAACCTCGGCATGTGACCCG
380 AAAAACAGAATTTGAAAAACAAAATTTTAAAAAACCTCGGCATGTGACCCA
* *
75841938 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATT--AAAAACAGAATT
* *
75842003 TGAAAATACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
64 TGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG
* *
75842066 AAAAGCAGAAATTGA-A-AA--G-AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
127 AAAAACAGAAATTAACAGAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
* * *
75842126 ATATGAGTTAATTTTTTGAAAAGAAGAAATTGAAAAGAAATACCTCAGCGTGCCCCGAGGCTCAA
192 ATATGAGTTGATTTTTTGAAAAGCAGAAATTG--AAGAAATACCTCAGCGTGTCCCGAGGCTCAA
** *
75842191 CTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAGACAGAAATTGAAAAT----A-A-CTCAA
255 CTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG-CAGAAATTGAAAATGAAAATACCTCAG
* ** * * * * *
75842250 CGTGT-CTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAATAGAAA-TAAAA
319 CATGTACCCGAGGCTCAACTCACCTCTCACAATATGACTTAATTTTTGAAAAACAGAAATTAAAA
75842312 ACA
384 ACA
75842315 TCAGAATACC
Statistics
Matches: 712, Mismatches: 61, Indels: 79
0.84 0.07 0.09
Matches are distributed among these distances:
415 38 0.05
416 2 0.00
417 32 0.04
418 2 0.00
419 1 0.00
420 20 0.03
421 52 0.07
422 11 0.02
423 38 0.05
424 1 0.00
425 8 0.01
426 1 0.00
427 1 0.00
428 1 0.00
429 15 0.02
430 169 0.24
431 122 0.17
432 15 0.02
433 37 0.05
434 1 0.00
435 1 0.00
436 73 0.10
437 60 0.08
438 8 0.01
440 3 0.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (430 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAACAGAATTTG
AAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
ACAGAAATTAACAGAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTGAAAAGCAGAAATTGAAGAAATACCTCAGCGTGTCCCGAGGCTCAACTCACC
TCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATGAAAATACCTCAGCATGTAC
CCGAGGCTCAACTCACCTCTCACAATATGACTTAATTTTTGAAAAACAGAAATTAAAAACAGAAT
TTGAAAAACAAAATTTTAAAAAACCTCGGCATGTGACCCA
Found at i:75841633 original size:88 final size:87
Alignment explanation
Indices: 75841471--75841634 Score: 285
Period size: 87 Copynumber: 1.9 Consensus size: 87
75841461 ACAGAATTTG
75841471 AAAAACAAATTTTGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACCCTCGCAATATGAGT
1 AAAAACAAATTTTGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACCCTCGCAATATGAGT
*
75841536 TGGTTTTTGAAAAATATAAATT
66 TGATTTTTGAAAAATATAAATT
*
75841558 AAAAACAGAA-TTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACA-AATTTTGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACC-CTCGCAATATGA
75841622 GTTGATTTTTGAA
64 GTTGATTTTTGAA
75841635 GAACAGAAAT
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
87 47 0.64
88 26 0.36
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (87 bp):
AAAAACAAATTTTGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACCCTCGCAATATGAGT
TGATTTTTGAAAAATATAAATT
Found at i:75841645 original size:88 final size:87
Alignment explanation
Indices: 75841457--75841650 Score: 291
Period size: 88 Copynumber: 2.2 Consensus size: 87
75841447 AACAGAAATT
*
75841457 AAAAACAGAATTTGAAAAACAAATTTTGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACC
1 AAAAACAGAAATT-AAAAACAAATTTTGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACC
*
75841522 CTCGCAATATGAGTTGGTTTTTG
65 CTCGCAATATGAGTTGATTTTTG
* * *
75841545 AAAAATATAAATTAAAAACAGAA-TTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACC
1 AAAAACAGAAATTAAAAACA-AATTTTGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACC
75841609 TCTCGCAATATGAGTTGATTTTTG
65 -CTCGCAATATGAGTTGATTTTTG
* *
75841633 AAGAACAGAAATTGAAAA
1 AAAAACAGAAATTAAAAA
75841651 TACCTCAGCG
Statistics
Matches: 95, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
87 47 0.49
88 48 0.51
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (87 bp):
AAAAACAGAAATTAAAAACAAATTTTGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACCC
TCGCAATATGAGTTGATTTTTG
Found at i:75841665 original size:342 final size:336
Alignment explanation
Indices: 75840872--75842161 Score: 1671
Period size: 342 Copynumber: 3.7 Consensus size: 336
75840862 ACAGAATTTG
*
75840872 AAAAACA-AATTTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGAAATATGA
1 AAAAACAGAA-TTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
75840936 GTTGATTTTTGGAAAATAGAAATTAAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGC
65 GTTGATTTTT-G---A-AG--------AACAGAAATTGAAAATACCTCAGC--GTGTCCTGAGGC
*
75841001 TCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAGAAATACCTCA
115 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAGAAATACCTCA
* * *
75841066 GCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGCGTTGTTTTTTTGCTAAATAGAAATTAAA
180 GCGTGTCCCGAGGCTCAACTCACATCTCACAATATGCGTTGTTTTTTTG-AAAAAAGAAATTAAA
*
75841131 AACAG-------AA-TTTGAAAATACCTCGGCATGTGACCTAAGGCTCAACTCACCTCTCGCAAT
244 AACAGAAAAACAAATTTTGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACCTCTCGCAAT
* *
75841188 ATGAGTTGATTTTTGAAAAACAGAAATT
309 ATGAGTTGATTTTTGAAAAATATAAATT
75841216 AAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
75841281 TTGATTTTTGAAGAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TTGATTTTTGAAGAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
* *
75841346 AATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAGAAATACCTTAGCATGTCCCGAGGCTC
131 AATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAGAAATACCTCAGCGTGTCCCGAGGCTC
* *
75841411 AACTCACTTTTCACAATATGCGTTGTTTTTTTGAAAAACAGAAATTAAAAACAGAATTTGAAAAA
196 AACTCACATCTCACAATATGCGTTGTTTTTTTGAAAAA-AGAAATTAAAAAC---A---GAAAAA
*
75841476 CAAATTTTGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACC-CTCGCAATATGAGTTGGT
254 CAAATTTTGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
75841540 TTTTGAAAAATATAAATT
319 TTTTGAAAAATATAAATT
75841558 AAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
75841623 TTGATTTTTGAAGAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TTGATTTTTGAAGAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
*
75841688 AATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAGAAATACCTCAGTGTGTCCCGAGGCTC
131 AATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAGAAATACCTCAGCGTGTCCCGAGGCTC
75841753 AACTCACATCTCACAATATGCGTTGTTTTTTTGAAAAAAAGAAATTAAAAACAG--------ATT
196 AACTCACATCTCACAATATGCGTTGTTTTTTTG-AAAAAAGAAATTAAAAACAGAAAAACAAATT
* * * *
75841810 TTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGACTTAATTTTTGA
260 TTGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-
75841875 AAAACAGAAATTAAAAATAGAATTT
324 ---A-A-AAA-T----ATA-AA-TT
* * *
75841900 GAAAAACAAAATTTTAAAAAACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
1 -AAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
75841965 GTTGATTTTTGAAAAACAGAAATTGAAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGC
65 GTTGATTTTT--------G-AA--G----AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGC
75842030 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAGAAATACCTCA
115 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAGAAATACCTCA
* * * ** *
75842095 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTGAAAAGAAGAAATTGAA
180 GCGTGTCCCGAGGCTCAACTCACATCTCACAATATGCGTTGTTTTTTTGAAAA-AAGAAATTAAA
75842160 AA
244 AA
75842162 GAAATACCTC
Statistics
Matches: 860, Mismatches: 38, Indels: 82
0.88 0.04 0.08
Matches are distributed among these distances:
328 44 0.05
329 152 0.18
331 21 0.02
332 1 0.00
333 1 0.00
334 1 0.00
335 4 0.00
336 2 0.00
339 3 0.00
340 4 0.00
341 2 0.00
342 272 0.32
343 117 0.14
344 70 0.08
345 2 0.00
351 1 0.00
352 2 0.00
354 1 0.00
357 4 0.00
358 156 0.18
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (336 bp):
AAAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAGAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAGAAATACCTCAGCGTGTCCCGAGGCTC
AACTCACATCTCACAATATGCGTTGTTTTTTTGAAAAAAGAAATTAAAAACAGAAAAACAAATTT
TGAAAATACCTCGGCATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
AAATATAAATT
Found at i:75841707 original size:75 final size:74
Alignment explanation
Indices: 75841559--75841803 Score: 298
Period size: 79 Copynumber: 3.2 Consensus size: 74
75841549 ATATAAATTA
* * *
75841559 AAAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
75841624 TGA--TTTTTG
64 TGATTTTTTTG
*
75841633 AAGAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AA-AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
75841698 GATTTTTTTG
65 GATTTTTTTG
* * *
75841708 AAAAGCAGAAATTGAAAAGAAATACCTCAGTGTGTCCCGAGGCTCAACTCACATCTCACAATATG
1 AAAA-CAGAAATTG---A-AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
75841773 CGTTG-TTTTTTTG
61 AGTTGATTTTTTTG
* *
75841786 AAAAAAAGAAATTAAAAA
1 -AAAACAGAAATTGAAAA
75841804 CAGATTTTGA
Statistics
Matches: 151, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
73 38 0.25
74 7 0.05
75 40 0.26
78 16 0.11
79 50 0.33
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (74 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTG
Found at i:75841772 original size:79 final size:78
Alignment explanation
Indices: 75841586--75841891 Score: 327
Period size: 79 Copynumber: 3.8 Consensus size: 78
75841576 TACCTCGGCA
* *
75841586 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAGAACAGAAATT---G
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAA
75841647 A-AAATACCTCAG
66 AGAAATACCTCAG
* * * * *
75841659 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAAA
75841724 AAGAAATACCTCAG
65 AAGAAATACCTCAG
* * * * * *
75841738 TGTGTCCCGAGGCTCAACTCACATCTCACAATATGCGTTGTTTTTTTGAAAAAAAGAAATTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATT--AA
75841803 ACAGATTTTGAAAATACCTCAG
64 A-A-A----G-AAATACCTCAG
* *
75841825 CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGACTT-AATTTTTGAAAAACAGAAATTAA
1 --TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAA
75841889 AAA
64 AAA
75841892 TAGAATTTGA
Statistics
Matches: 193, Mismatches: 23, Indels: 23
0.81 0.10 0.10
Matches are distributed among these distances:
73 38 0.20
75 17 0.09
78 19 0.10
79 46 0.24
80 2 0.01
81 1 0.01
82 1 0.01
84 1 0.01
85 1 0.01
86 4 0.02
87 11 0.06
88 18 0.09
89 34 0.18
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (78 bp):
TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAA
AGAAATACCTCAG
Found at i:75841842 original size:89 final size:86
Alignment explanation
Indices: 75841727--75841904 Score: 241
Period size: 88 Copynumber: 2.0 Consensus size: 86
75841717 AATTGAAAAG
* **
75841727 AAATACCTCAGTGTGTCCCGAGGCTCAACTCACATCTCACAATATG-CGTTGTTTTTTTGAAAAA
1 AAATACCTCAGTGTGACCCGAGGCTCAACTCACATCTCACAATATGAC-TT-AATTTTTGAAAAA
*
75841791 AAGAAATTAAAAACAGATTTTGA
64 AAGAAATTAAAAACAGAATTTGA
* *
75841814 AAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGACTTAATTTTTGAAAAA
1 AAATACCTCAG--TGTGACCCGAGGCTCAACTCACATCTCACAATATGACTTAATTTTTGAAAAA
* *
75841879 CAGAAATTAAAAATAGAATTTGA
64 AAGAAATTAAAAACAGAATTTGA
75841902 AAA
1 AAA
75841905 ACAAAATTTT
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
87 11 0.14
88 34 0.43
89 34 0.43
90 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (86 bp):
AAATACCTCAGTGTGACCCGAGGCTCAACTCACATCTCACAATATGACTTAATTTTTGAAAAAAA
GAAATTAAAAACAGAATTTGA
Found at i:75841902 original size:88 final size:84
Alignment explanation
Indices: 75841727--75842219 Score: 334
Period size: 78 Copynumber: 5.7 Consensus size: 84
75841717 AATTGAAAAG
* * * * ** *
75841727 AAATACCTCAGTGTGTCCCGAGGCTCAACTCACATCTCACAATATGCGTTGTTTTTTTGAAAAAA
1 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGAAAAAC
*
75841792 AGAAATTAAAAACAGATTTTGA
65 AGAAATTAAAAA-AGA-ATTGA
* *
75841814 AAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGACTTAATTTTTGAAAAA
1 AAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAA
75841879 CAGAAATTAAAAATAGAATTTGA
64 CAGAAATTAAAAA-AGAA-TTGA
*** *** ** * *
75841902 AAA-ACAAAATTTTAAAAAACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAATACCTCAGCGT----GTCC-C-G-A-G-G-CTC-A-ACTC-----ACCTCTCGCAATATGAG
*
75841966 TTGATTTTTGAAAAACAGAAATTGAAAAAACAGAAATTGA
49 TTAATTTTTGAAAAACAGAAATT--AAAAA-AG-AATTGA
* * *
75842006 AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
1 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGAAAAA
*
75842071 CAGAAATT---GAA-AA--G-
64 CAGAAATTAAAAAAGAATTGA
75842085 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTGAAAAGA
1 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAA-TTTTTGAAAA-A
*
75842150 -AGAAATT---GAA-AA--G-
64 CAGAAATTAAAAAAGAATTGA
* *
75842163 AAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
75842220 TTTTAAAGAC
Statistics
Matches: 335, Mismatches: 43, Indels: 66
0.75 0.10 0.15
Matches are distributed among these distances:
77 5 0.01
78 74 0.22
79 49 0.15
80 1 0.00
82 2 0.01
84 1 0.00
85 2 0.01
87 14 0.04
88 52 0.16
89 36 0.11
90 19 0.06
91 1 0.00
92 1 0.00
93 4 0.01
94 2 0.01
95 4 0.01
96 2 0.01
97 4 0.01
98 1 0.00
99 1 0.00
101 2 0.01
102 38 0.11
104 14 0.04
105 6 0.02
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.27
Consensus pattern (84 bp):
AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACA
GAAATTAAAAAAGAATTGA
Found at i:75841904 original size:14 final size:14
Alignment explanation
Indices: 75841870--75841919 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
75841860 TGACTTAATT
75841870 TTTGAAAAACAGAA
1 TTTGAAAAACAGAA
* *
75841884 ATT-AAAAATAGAA
1 TTTGAAAAACAGAA
*
75841897 TTTGAAAAACAAAA
1 TTTGAAAAACAGAA
*
75841911 TTTTAAAAA
1 TTTGAAAAA
75841920 ACCTCGGCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
13 11 0.38
14 18 0.62
ACGTcount: A:0.62, C:0.04, G:0.08, T:0.26
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:75841975 original size:102 final size:103
Alignment explanation
Indices: 75841786--75842008 Score: 333
Period size: 102 Copynumber: 2.2 Consensus size: 103
75841776 TGTTTTTTTG
* * *
75841786 AAAAAAAGAAATT-AAAAACAGATTTTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACC
1 AAAAAAAGAAATTGAAAAACAAAATTTGAAAAAACCTCAGCATGTGACCCGAGGCTCAACTCACC
75841850 TCTCGCAATATGACTTAATTTTTGAAAAACAGAAATT-
66 TCTCGCAATATGACTTAATTTTTGAAAAACAGAAATTA
* * * *
75841887 AAAAATAGAATTTGAAAAACAAAATTTTAAAAAACCTCGGCATGTGACCCGAGGCTCAACTCACC
1 AAAAAAAGAAATTGAAAAACAAAATTTGAAAAAACCTCAGCATGTGACCCGAGGCTCAACTCACC
* *
75841952 TCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGA
66 TCTCGCAATATGACTTAATTTTTGAAAAACAGAAATT-A
*
75841991 AAAAACAGAAATTGAAAA
1 AAAAAAAGAAATTGAAAA
75842009 TACCTCAGCG
Statistics
Matches: 108, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
101 11 0.10
102 81 0.75
104 16 0.15
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (103 bp):
AAAAAAAGAAATTGAAAAACAAAATTTGAAAAAACCTCAGCATGTGACCCGAGGCTCAACTCACC
TCTCGCAATATGACTTAATTTTTGAAAAACAGAAATTA
Found at i:75841996 original size:15 final size:15
Alignment explanation
Indices: 75841976--75842008 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
75841966 TTGATTTTTG
75841976 AAAAACAGAAATTGA
1 AAAAACAGAAATTGA
75841991 AAAAACAGAAATTGA
1 AAAAACAGAAATTGA
75842006 AAA
1 AAA
75842009 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.70, C:0.06, G:0.12, T:0.12
Consensus pattern (15 bp):
AAAAACAGAAATTGA
Found at i:75842123 original size:79 final size:79
Alignment explanation
Indices: 75842006--75842295 Score: 437
Period size: 78 Copynumber: 3.7 Consensus size: 79
75841996 CAGAAATTGA
*
75842006 AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
1 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
75842071 CAGAAATTGAAAAG
66 CAGAAATTGAAAAG
*
75842085 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTTGAAAAG
1 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
*
75842149 AAGAAATTGAAAAG
66 CAGAAATTGAAAAG
* **
75842163 AAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAG
1 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
75842228 ACAGAAATTG---A-
66 -CAGAAATTGAAAAG
* * ** *
75842239 AAATAACTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
75842296 GAAAATAGAA
Statistics
Matches: 195, Mismatches: 14, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
76 51 0.26
77 1 0.01
78 75 0.38
79 60 0.31
80 8 0.04
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (79 bp):
AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
CAGAAATTGAAAAG
Found at i:75847880 original size:18 final size:19
Alignment explanation
Indices: 75847843--75847881 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
75847833 CTGCATCTAT
*
75847843 TATTAGAGTAAATTTTACA
1 TATTAGAGTAAATTTAACA
75847862 TATTAGAGT-AATTTAACA
1 TATTAGAGTAAATTTAACA
75847880 TA
1 TA
75847882 CATATAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (19 bp):
TATTAGAGTAAATTTAACA
Found at i:75848769 original size:28 final size:28
Alignment explanation
Indices: 75848729--75848798 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
75848719 ATAGTAAGTC
*
75848729 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
75848757 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
75848785 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75848799 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:75853734 original size:22 final size:22
Alignment explanation
Indices: 75853693--75853734 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
75853683 AATGGATGAA
* *
75853693 TGAATAAATGACAAATGAATAT
1 TGAATAAATAACAAAGGAATAT
*
75853715 TGAATAAATAACGAAGGAAT
1 TGAATAAATAACAAAGGAAT
75853735 GTTAGTCATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.05, G:0.17, T:0.24
Consensus pattern (22 bp):
TGAATAAATAACAAAGGAATAT
Found at i:75857734 original size:20 final size:21
Alignment explanation
Indices: 75857691--75857734 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
75857681 AAACATAATA
*
75857691 ATAGTATTACAAAGTATATAC
1 ATAGTATTACAAAATATATAC
*
75857712 ATAGTATTA-AAAATATGTAC
1 ATAGTATTACAAAATATATAC
75857732 ATA
1 ATA
75857735 ATATGGCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (21 bp):
ATAGTATTACAAAATATATAC
Found at i:75857772 original size:26 final size:26
Alignment explanation
Indices: 75857712--75857773 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
75857702 AAGTATATAC
**
75857712 ATAGTATT-AAAAATATGTACATAAT
1 ATAGTATTAAAAAATACATACATAAT
* **
75857737 ATGGCGTTAAAAAATACATACATAAT
1 ATAGTATTAAAAAATACATACATAAT
75857763 ATAGTATTAAA
1 ATAGTATTAAA
75857774 TATAGACATA
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
25 5 0.18
26 23 0.82
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (26 bp):
ATAGTATTAAAAAATACATACATAAT
Found at i:75857896 original size:24 final size:23
Alignment explanation
Indices: 75857860--75858150 Score: 107
Period size: 24 Copynumber: 12.8 Consensus size: 23
75857850 ATTAAAAGAC
*
75857860 ATATATACGTAATATATATGTAAA
1 ATATATACATAATATATAT-TAAA
*
75857884 ATGTATACATAATATAGTATTAAA
1 ATATATACATAATATA-TATTAAA
* * * **
75857908 ATATTTACATAGTATATACATATT
1 ATATATACATAATATATA-TTAAA
* * *
75857932 AGAAATA-ATAATA-ATGTTAAA
1 ATATATACATAATATATATTAAA
*
75857953 AAATA-ACTATTAATA-ATATTACATAA
1 ATATATAC-A-TAATATATATT--A-AA
75857979 ATATATACAT-ATATATATTAAA
1 ATATATACATAATATATATTAAA
75858001 GATATATAC---ATATA-A-TAAA
1 -ATATATACATAATATATATTAAA
*** * *
75858020 ACGCATAC-TAATAT-TAATACTA
1 ATATATACATAATATATATTA-AA
**
75858042 ATA-ATA-AGGATA-ATA-TAAA
1 ATATATACATAATATATATTAAA
**
75858061 ATATATACATGAAATAGTATAAAAAA
1 ATATATACAT--AATA-TATATTAAA
75858087 ATATATA-ACTAATA-ATATTAAA
1 ATATATACA-TAATATATATTAAA
*
75858109 ATATATACATAATATTTA-TAAA
1 ATATATACATAATATATATTAAA
*
75858131 ACATATACGATATATATATA
1 ATATATAC-ATA-ATATATA
75858151 CATTAGAAAT
Statistics
Matches: 200, Mismatches: 37, Indels: 60
0.67 0.12 0.20
Matches are distributed among these distances:
18 5 0.03
19 8 0.04
20 12 0.06
21 21 0.10
22 36 0.18
23 34 0.17
24 50 0.25
25 14 0.07
26 18 0.09
27 2 0.01
ACGTcount: A:0.54, C:0.06, G:0.05, T:0.35
Consensus pattern (23 bp):
ATATATACATAATATATATTAAA
Found at i:75858121 original size:22 final size:21
Alignment explanation
Indices: 75858051--75858138 Score: 70
Period size: 22 Copynumber: 3.9 Consensus size: 21
75858041 AATAATAAGG
75858051 ATAATATAAAATATATACATGAA
1 ATAATATAAAATATATACAT--A
*
75858074 ATAGTATAAAAAAATATATA-ACTA
1 ATA--AT-ATAAAATATATACA-TA
75858098 ATAATATTAAAATATATACATA
1 ATAATA-TAAAATATATACATA
* *
75858120 ATATTTATAAAACATATAC
1 ATA-ATATAAAATATATAC
75858139 GATATATATA
Statistics
Matches: 54, Mismatches: 4, Indels: 15
0.74 0.05 0.21
Matches are distributed among these distances:
21 1 0.02
22 28 0.52
23 6 0.11
24 4 0.07
25 3 0.06
26 12 0.22
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (21 bp):
ATAATATAAAATATATACATA
Found at i:75858145 original size:22 final size:22
Alignment explanation
Indices: 75858054--75858150 Score: 65
Period size: 22 Copynumber: 4.2 Consensus size: 22
75858044 AATAAGGATA
*
75858054 ATATAAAATATATACATGAA-AT
1 ATATAAAACATATACAT-AATAT
* *
75858076 AGTATAAAA-AAATATATAACTAAT
1 A-TATAAAACATATACATAA-T-AT
*
75858100 AATATTAAAATATATACATAATAT
1 -ATA-TAAAACATATACATAATAT
*
75858124 TTATAAAACATATACGAT-ATAT
1 ATATAAAACATATAC-ATAATAT
75858146 ATATA
1 ATATA
75858151 CATTAGAAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 16
0.72 0.08 0.19
Matches are distributed among these distances:
21 2 0.03
22 26 0.43
23 11 0.18
24 6 0.10
25 7 0.12
26 8 0.13
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (22 bp):
ATATAAAACATATACATAATAT
Found at i:75858288 original size:47 final size:47
Alignment explanation
Indices: 75858214--75858340 Score: 156
Period size: 47 Copynumber: 2.7 Consensus size: 47
75858204 ACGTACGTAT
* *
75858214 ATATATAAATAATAATGGTATTAAAAATAT-TCAA-TATATAATATTAGAA
1 ATATATACATAATAATAGTA-TAAAAATATAT-AATTA-ATAATATTA-AA
*
75858263 ATATATACATAA-AATAGTATAAAAATATATAATTAATGATATTAAA
1 ATATATACATAATAATAGTATAAAAATATATAATTAATAATATTAAA
75858309 ATATATACATAATAATA-TATAAAAA-ATATAAT
1 ATATATACATAATAATAGTATAAAAATATATAAT
75858341 ATTAAAAAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 10
0.85 0.04 0.12
Matches are distributed among these distances:
45 7 0.10
46 22 0.31
47 23 0.32
48 9 0.12
49 11 0.15
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (47 bp):
ATATATACATAATAATAGTATAAAAATATATAATTAATAATATTAAA
Found at i:75858290 original size:22 final size:23
Alignment explanation
Indices: 75858216--75858338 Score: 85
Period size: 22 Copynumber: 5.2 Consensus size: 23
75858206 GTACGTATAT
* *
75858216 ATATAAATAATAATGGTATTAAAA
1 ATATACATAATAATAGTA-TAAAA
* * * *
75858240 ATATTCAATATATAATATTAGAAAT
1 ATATAC-ATA-ATAATAGTATAAAA
75858265 ATATACATAA-AATAGTATAAAA
1 ATATACATAATAATAGTATAAAA
75858287 ATAT--ATAATTAAT-GATATTAAAA
1 ATATACATAA-TAATAG-TA-TAAAA
75858310 TATATACATAATAATA-TATAAAAA
1 -ATATACATAATAATAGTAT-AAAA
75858334 ATATA
1 ATATA
75858339 ATATTAAAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 23
0.70 0.09 0.21
Matches are distributed among these distances:
20 4 0.05
21 1 0.01
22 18 0.23
23 12 0.15
24 17 0.22
25 15 0.19
26 11 0.14
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (23 bp):
ATATACATAATAATAGTATAAAA
Found at i:75858339 original size:16 final size:16
Alignment explanation
Indices: 75858320--75858354 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
75858310 TATATACATA
75858320 ATAATA-TATAAAAAAT
1 ATAATATTA-AAAAAAT
75858336 ATAATATTAAAAAAAT
1 ATAATATTAAAAAAAT
75858352 ATA
1 ATA
75858355 TGTATATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
ATAATATTAAAAAAAT
Found at i:75858374 original size:25 final size:26
Alignment explanation
Indices: 75858346--75858404 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
75858336 ATAATATTAA
*
75858346 AAAAATATATGTAT-ATAACATA-TAT
1 AAAAATATATAT-TCATAACATAGTAT
*
75858371 AAAAAAATATATTCATAACATAGTAT
1 AAAAATATATATTCATAACATAGTAT
*
75858397 TAAAATAT
1 AAAAATAT
75858405 TTACATAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.04
25 18 0.64
26 9 0.32
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (26 bp):
AAAAATATATATTCATAACATAGTAT
Found at i:75858400 original size:27 final size:28
Alignment explanation
Indices: 75858339--75858401 Score: 87
Period size: 27 Copynumber: 2.3 Consensus size: 28
75858329 AAAAAATATA
*
75858339 ATATTAAAAAAATATATGTATATAACAT
1 ATATTAAAAAAATATATGTACATAACAT
75858367 ATA-TAAAAAAATATAT-T-CATAACAT
1 ATATTAAAAAAATATATGTACATAACAT
75858392 AGTATTAAAA
1 A-TATTAAAA
75858402 TATTTACATA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
25 8 0.25
26 3 0.09
27 18 0.56
28 3 0.09
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (28 bp):
ATATTAAAAAAATATATGTACATAACAT
Found at i:75858495 original size:21 final size:20
Alignment explanation
Indices: 75858466--75858511 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 20
75858456 CATAAATATG
*
75858466 TACATATATATATTAAAGATATA
1 TACATATATA-A-TAAA-ACATA
75858489 TACATATATAATAAAACATA
1 TACATATATAATAAAACATA
75858509 TAC
1 TAC
75858512 TAATACTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 7 0.32
21 4 0.18
22 1 0.05
23 10 0.45
ACGTcount: A:0.54, C:0.09, G:0.02, T:0.35
Consensus pattern (20 bp):
TACATATATAATAAAACATA
Found at i:75858526 original size:3 final size:3
Alignment explanation
Indices: 75858512--75858544 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
75858502 AAACATATAC
*
75858512 TAA TAC TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
75858545 ACAAAAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:75858749 original size:29 final size:29
Alignment explanation
Indices: 75858698--75858767 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
75858688 ACATTGGGGA
*
75858698 CCAAATTGAAAAGCGCAACAAAT-TGTAGGG
1 CCAAATT-AAAAGCACAACAAATCTG-AGGG
* * **
75858728 CCAAATTAAAAGCACCATAAATCTGATTG
1 CCAAATTAAAAGCACAACAAATCTGAGGG
75858757 CCAAATTAAAA
1 CCAAATTAAAA
75858768 CTGCAATTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
29 25 0.74
30 9 0.26
ACGTcount: A:0.47, C:0.19, G:0.14, T:0.20
Consensus pattern (29 bp):
CCAAATTAAAAGCACAACAAATCTGAGGG
Found at i:75859085 original size:20 final size:21
Alignment explanation
Indices: 75859060--75859098 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
75859050 AAGGTAAAAA
*
75859060 TTTTTTTCTTTT-CTTTTTTC
1 TTTTTTTATTTTCCTTTTTTC
75859080 TTTTTTTATTTTCCTTTTT
1 TTTTTTTATTTTCCTTTTT
75859099 ATTATACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTTTATTTTCCTTTTTTC
Found at i:75860897 original size:20 final size:20
Alignment explanation
Indices: 75860872--75860909 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
75860862 AGGAAGAAAA
*
75860872 AATATTTGTTGGGTGTTGCC
1 AATATTTGTTAGGTGTTGCC
75860892 AATATTTGTTAGGTGTTG
1 AATATTTGTTAGGTGTTG
75860910 ACACTTCCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.05, G:0.29, T:0.47
Consensus pattern (20 bp):
AATATTTGTTAGGTGTTGCC
Found at i:75861610 original size:22 final size:22
Alignment explanation
Indices: 75861582--75861625 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
75861572 TCTTTGTATT
75861582 ATTAAATGTGTTGAATAAATTG
1 ATTAAATGTGTTGAATAAATTG
75861604 ATTAAATGTGTTGAATAAATTG
1 ATTAAATGTGTTGAATAAATTG
75861626 GATATTCAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (22 bp):
ATTAAATGTGTTGAATAAATTG
Found at i:75862522 original size:25 final size:25
Alignment explanation
Indices: 75862488--75862537 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
75862478 GTTATATAAC
75862488 TTTTTTTTTAGTGTAGCATTTAGAT
1 TTTTTTTTTAGTGTAGCATTTAGAT
75862513 TTTTTTTTTAGTGTAGCATTTAGAT
1 TTTTTTTTTAGTGTAGCATTTAGAT
75862538 CTTTCTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.04, G:0.16, T:0.60
Consensus pattern (25 bp):
TTTTTTTTTAGTGTAGCATTTAGAT
Found at i:75864015 original size:19 final size:19
Alignment explanation
Indices: 75863991--75864029 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
75863981 TAAAGGCTTC
75863991 AGGTAAGGATGACTTCCTT
1 AGGTAAGGATGACTTCCTT
75864010 AGGTAAGGATGACTTCCTT
1 AGGTAAGGATGACTTCCTT
75864029 A
1 A
75864030 CTCTATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (19 bp):
AGGTAAGGATGACTTCCTT
Found at i:75866327 original size:2 final size:2
Alignment explanation
Indices: 75866322--75866351 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
75866312 TATATATATA
75866322 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
75866352 ATAGCTGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:75869922 original size:16 final size:16
Alignment explanation
Indices: 75869897--75869927 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75869887 ACAGTAAACC
*
75869897 AAGTGCGAGCCTGTCA
1 AAGTGAGAGCCTGTCA
75869913 AAGTGAGAGCCTGTC
1 AAGTGAGAGCCTGTC
75869928 TAAATGTAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.23, G:0.32, T:0.19
Consensus pattern (16 bp):
AAGTGAGAGCCTGTCA
Found at i:75890592 original size:6 final size:6
Alignment explanation
Indices: 75890566--75890604 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
75890556 TGAAAAAGAT
* * *
75890566 AAATAA AGATAA AAGTAA AAATAA AAACAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
75890605 GTCTTCAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:75893797 original size:49 final size:49
Alignment explanation
Indices: 75893737--75893956 Score: 283
Period size: 49 Copynumber: 4.6 Consensus size: 49
75893727 GATAATTGTG
75893737 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75893784 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCTGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75893833 ATGTGAAAGTGTATATATATATGTGATAAGGTCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
75893884 ATGTGAAAGTG--TATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
75893931 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
75893957 TCCCGAAGGG
Statistics
Matches: 152, Mismatches: 13, Indels: 15
0.84 0.07 0.08
Matches are distributed among these distances:
46 2 0.01
47 48 0.32
48 5 0.03
49 51 0.34
51 46 0.30
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75893871 original size:51 final size:51
Alignment explanation
Indices: 75893746--75893901 Score: 271
Period size: 51 Copynumber: 3.1 Consensus size: 51
75893736 GATGTGAATG
75893746 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
75893795 TATATACATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
75893846 TATATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
75893897 TATAT
1 TATAT
75893902 GTGACAGAGC
Statistics
Matches: 100, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
49 47 0.47
51 53 0.53
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (51 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:75912955 original size:13 final size:13
Alignment explanation
Indices: 75912937--75912961 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75912927 CCGAGCACAT
75912937 GCCCGTGTCCTTG
1 GCCCGTGTCCTTG
75912950 GCCCGTGTCCTT
1 GCCCGTGTCCTT
75912962 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCCGTGTCCTTG
Found at i:75918616 original size:11 final size:11
Alignment explanation
Indices: 75918600--75918640 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
75918590 AATATATATT
75918600 TATAATTGTAC
1 TATAATTGTAC
*
75918611 TATAATTGTAT
1 TATAATTGTAC
*
75918622 TATATTTGTAC
1 TATAATTGTAC
75918633 TTATAATT
1 -TATAATT
75918641 TTTATGAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
11 19 0.76
12 6 0.24
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (11 bp):
TATAATTGTAC
Found at i:75922135 original size:46 final size:46
Alignment explanation
Indices: 75922068--75922159 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
75922058 AGAAGAAGAA
* * *
75922068 AATTCACGATTCATGGTGTACTCGCCTCCAGCTTATATGCATAATG
1 AATTCACGATTCACGGCGTACTCGCCTCCAGCCTATATGCATAATG
75922114 AATTCACGATTCACGGCGTACTCGCCTCCAGCCTATATGCATAATG
1 AATTCACGATTCACGGCGTACTCGCCTCCAGCCTATATGCATAATG
75922160 TTGATCTATC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (46 bp):
AATTCACGATTCACGGCGTACTCGCCTCCAGCCTATATGCATAATG
Done.