Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 231 of 343
Found at i:75924288 original size:59 final size:59
Alignment explanation
Indices: 75924216--75924382 Score: 210
Period size: 59 Copynumber: 2.8 Consensus size: 59
75924206 TAACTCCTAA
****** *
75924216 TTTATTAAATGAAACAATGA-AAAAATAATTTGTATTGTCTTATTCAAAAGAACGTCTAT
1 TTTATTAAATGAAACAAT-ATAAAAATAATTTGTACAAAAATATTCAAAACAACGTCTAT
* *
75924275 TTTATTAAATGAAACAATATAAAAATAATTTGTACAAAAATATTTAAAACAACTTCTAT
1 TTTATTAAATGAAACAATATAAAAATAATTTGTACAAAAATATTCAAAACAACGTCTAT
* * *
75924334 TTTATTAAATGAAACAATATAAAAATAGTTTGTACAAATATATTAAAAA
1 TTTATTAAATGAAACAATATAAAAATAATTTGTACAAAAATATTCAAAA
75924383 ATCAATGCAT
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
58 1 0.01
59 94 0.99
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (59 bp):
TTTATTAAATGAAACAATATAAAAATAATTTGTACAAAAATATTCAAAACAACGTCTAT
Found at i:75927382 original size:33 final size:32
Alignment explanation
Indices: 75927329--75927515 Score: 149
Period size: 33 Copynumber: 5.6 Consensus size: 32
75927319 TGGTCCAACC
* * *
75927329 ATGGTCTTACGTCCATAATGCCATAACCCAGTT
1 ATGGTCTTACAT-CAGAATGCCATAACCCAGCT
*
75927362 ATGGTCTTATCATCAGAATGCCATAGCCCAGCT
1 ATGGTCTTA-CATCAGAATGCCATAACCCAGCT
* * *** * *
75927395 ATGGTCTTACATATAAACACTGCCATGGTCCAACC
1 ATGGTCTTACAT-CAGA-A-TGCCATAACCCAGCT
* * * * *
75927430 ATGGTCTTACGTCCATAGTGTCATAACCCAGTT
1 ATGGTCTTACAT-CAGAATGCCATAACCCAGCT
*
75927463 ATGGTCTTATCATCAGAATGCCATAACCCAACT
1 ATGGTCTTA-CATCAGAATGCCATAACCCAGCT
*
75927496 ATGGTCTTACATAAGAATGC
1 ATGGTCTTACATCAGAATGC
75927516 AATTTGTCTT
Statistics
Matches: 120, Mismatches: 29, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
32 13 0.11
33 78 0.65
34 5 0.04
35 24 0.20
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (32 bp):
ATGGTCTTACATCAGAATGCCATAACCCAGCT
Found at i:75927455 original size:101 final size:101
Alignment explanation
Indices: 75927279--75927508 Score: 381
Period size: 101 Copynumber: 2.3 Consensus size: 101
75927269 GTTTCTTTTG
* * *
75927279 TGCCATAGTCCAACTATGG-CTTTACATATAAACATTGTCATGGTCCAACCATGGTCTTACGTCC
1 TGCCATAGCCCAACTATGGTC-TTACATATAAACACTGCCATGGTCCAACCATGGTCTTACGTCC
75927343 ATAATGCCATAACCCAGTTATGGTCTTATCATCAGAA
65 ATAATGCCATAACCCAGTTATGGTCTTATCATCAGAA
*
75927380 TGCCATAGCCCAGCTATGGTCTTACATATAAACACTGCCATGGTCCAACCATGGTCTTACGTCCA
1 TGCCATAGCCCAACTATGGTCTTACATATAAACACTGCCATGGTCCAACCATGGTCTTACGTCCA
* *
75927445 TAGTGTCATAACCCAGTTATGGTCTTATCATCAGAA
66 TAATGCCATAACCCAGTTATGGTCTTATCATCAGAA
*
75927481 TGCCATAACCCAACTATGGTCTTACATA
1 TGCCATAGCCCAACTATGGTCTTACATA
75927509 AGAATGCAAT
Statistics
Matches: 120, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
101 119 0.99
102 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (101 bp):
TGCCATAGCCCAACTATGGTCTTACATATAAACACTGCCATGGTCCAACCATGGTCTTACGTCCA
TAATGCCATAACCCAGTTATGGTCTTATCATCAGAA
Found at i:75929328 original size:31 final size:31
Alignment explanation
Indices: 75929292--75929366 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
75929282 CTGACTGTTA
* *
75929292 TAAAAAATTATAAAAAAAATATTAATTAA-CT
1 TAAAAAATTA-AAAAAAAATATTAAATAATAT
* **
75929323 TAAAAAATGAAGTAAAAATATTAAATAATAT
1 TAAAAAATTAAAAAAAAATATTAAATAATAT
75929354 TAAAAAATTAAAA
1 TAAAAAATTAAAA
75929367 TTAACCCTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
30 15 0.43
31 20 0.57
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (31 bp):
TAAAAAATTAAAAAAAAATATTAAATAATAT
Found at i:75934019 original size:17 final size:17
Alignment explanation
Indices: 75933974--75934036 Score: 76
Period size: 17 Copynumber: 3.7 Consensus size: 17
75933964 TTCGCATAAA
75933974 ATAATAGTTCAGATG-AA-
1 ATAATAGTTC--ATGCAAT
75933991 ATAATAGTTCATGCAAT
1 ATAATAGTTCATGCAAT
*
75934008 ATAATAGTTCATTCAAT
1 ATAATAGTTCATGCAAT
*
75934025 ATAATAATTCAT
1 ATAATAGTTCAT
75934037 TCATACCACA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
15 3 0.07
16 2 0.05
17 37 0.88
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.37
Consensus pattern (17 bp):
ATAATAGTTCATGCAAT
Found at i:75934037 original size:17 final size:17
Alignment explanation
Indices: 75933991--75934039 Score: 80
Period size: 17 Copynumber: 2.9 Consensus size: 17
75933981 TTCAGATGAA
*
75933991 ATAATAGTTCATGCAAT
1 ATAATAGTTCATTCAAT
75934008 ATAATAGTTCATTCAAT
1 ATAATAGTTCATTCAAT
*
75934025 ATAATAATTCATTCA
1 ATAATAGTTCATTCA
75934040 TACCACATCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.39
Consensus pattern (17 bp):
ATAATAGTTCATTCAAT
Found at i:75934128 original size:22 final size:23
Alignment explanation
Indices: 75934103--75934146 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
75934093 TTATGAAACA
*
75934103 TATAAG-GGACTTTATCACCACC
1 TATAAGTGGACTCTATCACCACC
75934125 TATAAGTGGACTCTATCACCAC
1 TATAAGTGGACTCTATCACCAC
75934147 ACATTGGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (23 bp):
TATAAGTGGACTCTATCACCACC
Found at i:75936464 original size:58 final size:58
Alignment explanation
Indices: 75936393--75936537 Score: 195
Period size: 57 Copynumber: 2.5 Consensus size: 58
75936383 TTGCTAACAT
* * **
75936393 GATTTAGCATGGACTGGTAATCCTGATATAATCT-TTCTCAAGCATATGTTACAATTAG
1 GATTTAGCCTGGACTGGTAATCCTGATATAAGCTCTTCT-AAGCATATGTTACAAAAAG
* * *
75936451 GATTTAGCCTGGACTGGTAATCCTAAT-TGAGCTCTTCTGAGCATATGTTACAAAAAG
1 GATTTAGCCTGGACTGGTAATCCTGATATAAGCTCTTCTAAGCATATGTTACAAAAAG
*
75936508 GATTTAGCCTGGACTGGTAATCCTGTTATA
1 GATTTAGCCTGGACTGGTAATCCTGATATA
75936538 TGTTATAAGG
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
57 45 0.60
58 30 0.40
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (58 bp):
GATTTAGCCTGGACTGGTAATCCTGATATAAGCTCTTCTAAGCATATGTTACAAAAAG
Found at i:75940376 original size:25 final size:25
Alignment explanation
Indices: 75940343--75940421 Score: 122
Period size: 25 Copynumber: 3.2 Consensus size: 25
75940333 AATATCCAAA
75940343 AAAATAAAGTAATAAATAATAAAAC
1 AAAATAAAGTAATAAATAATAAAAC
*
75940368 AAAATAAAGTAATAAATAATAAAAT
1 AAAATAAAGTAATAAATAATAAAAC
* * *
75940393 AAAATAAAATAAAAAATAATAAAAG
1 AAAATAAAGTAATAAATAATAAAAC
75940418 AAAA
1 AAAA
75940422 AAGAAAAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (25 bp):
AAAATAAAGTAATAAATAATAAAAC
Found at i:75940395 original size:5 final size:5
Alignment explanation
Indices: 75940360--75940421 Score: 56
Period size: 5 Copynumber: 12.4 Consensus size: 5
75940350 AGTAATAAAT
* * *
75940360 AATAA AACAA AATAA AGTAA TAA-AT AATAA AATAA AATAA AATAA AA-AA
1 AATAA AATAA AATAA AATAA -AATAA AATAA AATAA AATAA AATAA AATAA
*
75940409 TAATAA AAGAA AA
1 -AATAA AATAA AA
75940422 AAGAAAAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
4 4 0.09
5 39 0.85
6 3 0.07
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:75940431 original size:25 final size:25
Alignment explanation
Indices: 75940356--75940433 Score: 86
Period size: 25 Copynumber: 3.2 Consensus size: 25
75940346 ATAAAGTAAT
* ** *
75940356 AAATAATAAAACAAAATAAAGTAAT
1 AAATAATAAAAGAAAATAAAAAAAA
* *
75940381 AAATAATAAAATAAAATAAAATAAA
1 AAATAATAAAAGAAAATAAAAAAAA
*
75940406 AAATAATAAAAGAAAA-AAGAAAAA
1 AAATAATAAAAGAAAATAAAAAAAA
75940430 AAAT
1 AAAT
75940434 TGGGTTGCCT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 10 0.21
25 37 0.79
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (25 bp):
AAATAATAAAAGAAAATAAAAAAAA
Found at i:75944253 original size:28 final size:28
Alignment explanation
Indices: 75944198--75944255 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
75944188 CTGGGTTATA
* * *
75944198 TGTATTTGCAAATGGGTTATATCGCCTT
1 TGTATTTGCAAAGGGGTCATATCACCTT
*
75944226 TGTATTTGCAAAGGGGTCATATTACCTT
1 TGTATTTGCAAAGGGGTCATATCACCTT
75944254 TG
1 TG
75944256 GGGCGGTCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.41
Consensus pattern (28 bp):
TGTATTTGCAAAGGGGTCATATCACCTT
Found at i:75944464 original size:43 final size:43
Alignment explanation
Indices: 75944416--75944502 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
75944406 TTTAGTAAGT
75944416 CTATCAACTTTATCTTCTAAGGTTGAATTACTTAGCTGGTAAA
1 CTATCAACTTTATCTTCTAAGGTTGAATTACTTAGCTGGTAAA
*
75944459 CTATCAACTTTATCTTCTAAGGTTGAATTATTTAGCTGGTAAA
1 CTATCAACTTTATCTTCTAAGGTTGAATTACTTAGCTGGTAAA
75944502 C
1 C
75944503 CCTTCTAATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (43 bp):
CTATCAACTTTATCTTCTAAGGTTGAATTACTTAGCTGGTAAA
Found at i:75946362 original size:18 final size:18
Alignment explanation
Indices: 75946314--75946362 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
75946304 ATTTATTCCT
75946314 AATTAAATTCTAAAAGATA
1 AATTAAA-TCTAAAAGATA
** *
75946333 AA-TAAAGATAAAAGCTA
1 AATTAAATCTAAAAGATA
75946350 AATTAAATCTAAA
1 AATTAAATCTAAA
75946363 TAATAATCTT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
17 10 0.42
18 12 0.50
19 2 0.08
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (18 bp):
AATTAAATCTAAAAGATA
Found at i:75952388 original size:34 final size:34
Alignment explanation
Indices: 75952346--75952466 Score: 120
Period size: 34 Copynumber: 3.6 Consensus size: 34
75952336 ATCAATACGA
75952346 TAACAATTAATATGCTTATAACAGATTGATATGG
1 TAACAATTAATATGCTTATAACAGATTGATATGG
** * * * * *
75952380 TAGTAATTAATATACTTAAAATAGA-TCA-ATAG
1 TAACAATTAATATGCTTATAACAGATTGATATGG
* * *
75952412 TAACAGTTAATATGCTTATAGCAGATTGATACGG
1 TAACAATTAATATGCTTATAACAGATTGATATGG
* *
75952446 TAACAAATAATGTGCTTATAA
1 TAACAATTAATATGCTTATAA
75952467 TAAATCAATT
Statistics
Matches: 64, Mismatches: 21, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
32 21 0.33
33 4 0.06
34 39 0.61
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (34 bp):
TAACAATTAATATGCTTATAACAGATTGATATGG
Found at i:75952474 original size:66 final size:68
Alignment explanation
Indices: 75952323--75952475 Score: 202
Period size: 66 Copynumber: 2.3 Consensus size: 68
75952313 GCAATATGAC
* ** *
75952323 ATACTTATAATAGATCAATACGATAACAATTAATATGCTTATAACAGATTGATATGGTAGTAATT
1 ATACTTATAATAGATCAATACGATAACAATTAATATGCTTATAACAGATTGATACGGTAACAAAT
75952388 AAT
66 AAT
* * *
75952391 ATACTTAAAATAGATCAATA-G-TAACAGTTAATATGCTTATAGCAGATTGATACGGTAACAAAT
1 ATACTTATAATAGATCAATACGATAACAATTAATATGCTTATAACAGATTGATACGGTAACAAAT
75952454 AAT
66 AAT
* * *
75952457 GTGCTTATAATAAATCAAT
1 ATACTTATAATAGATCAAT
75952476 TTAATAGAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
66 54 0.73
67 1 0.01
68 19 0.26
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.33
Consensus pattern (68 bp):
ATACTTATAATAGATCAATACGATAACAATTAATATGCTTATAACAGATTGATACGGTAACAAAT
AAT
Found at i:75955337 original size:40 final size:38
Alignment explanation
Indices: 75955291--75955502 Score: 126
Period size: 39 Copynumber: 5.4 Consensus size: 38
75955281 GGGCTAAGTC
*
75955291 CCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGC-AAGT-ACCA-ATCCGAACTAAGAT
* * * *
75955331 CTGAAGGCATTTGTACGAGTACTAATCCGAACTAAGAT
1 CCGAAGGCATTTGTGCAAGTACCAATCCGAACTAAGAT
* * ***
75955369 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-T
1 CCGAAGGCATTTGTGCAAG-TAC-CAATCCGAACTAAGAT
* * ***
75955408 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-T
1 CCGAAGGCATTTGTGCAAG-TAC-CAATCCGAACTAAGAT
* * ***
75955447 CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-T
1 -CCGAAGGCATTTGTGCAAG-TAC-CAATCCGAACTAAGAT
75955487 CCGAAGGCATTTGTGC
1 CCGAAGGCATTTGTGC
75955503 GAGTTACTAT
Statistics
Matches: 157, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
38 30 0.19
39 62 0.39
40 59 0.38
41 6 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (38 bp):
CCGAAGGCATTTGTGCAAGTACCAATCCGAACTAAGAT
Found at i:75955411 original size:39 final size:39
Alignment explanation
Indices: 75955278--75955539 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 39
75955268 TTGAATGATG
* * * *
75955278 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
75955318 TCCGGACTAAGATCTGAAGGCATTTGTACGAG-TACT-AA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
**
75955356 TCCGAACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
75955396 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
75955435 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
*
75955475 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75955515 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
75955540 AACGAGTAGC
Statistics
Matches: 200, Mismatches: 15, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
38 30 0.15
39 80 0.40
40 83 0.41
41 7 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75955572 original size:79 final size:79
Alignment explanation
Indices: 75955278--75955539 Score: 345
Period size: 79 Copynumber: 3.3 Consensus size: 79
75955268 TTGAATGATG
* * * * ** *
75955278 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATT
*
75955342 TGTACGAG-TACT-AA
64 TGTGCGAGTTACTAAA
**
75955356 TCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTT
75955420 GTGCGAGTTACTAAA
65 GTGCGAGTTACTAAA
*
75955435 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTG
75955500 TGCGAGTTACTATAA
66 TGCGAGTTACTA-AA
*
75955515 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75955540 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
77 18 0.11
78 38 0.23
79 105 0.64
80 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:75963448 original size:40 final size:40
Alignment explanation
Indices: 75963316--75963534 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
75963306 TTGAATGATG
* * * *
75963316 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
75963356 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG-TACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
75963394 TCC--GCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75963430 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75963470 TCCGGG-TTAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75963510 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75963535 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 10, Indels: 20
0.84 0.05 0.11
Matches are distributed among these distances:
34 19 0.12
35 4 0.03
36 10 0.06
38 9 0.06
39 37 0.23
40 72 0.45
41 8 0.05
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75963514 original size:79 final size:77
Alignment explanation
Indices: 75963316--75963567 Score: 264
Period size: 79 Copynumber: 3.2 Consensus size: 77
75963306 TTGAATGATG
* * * * *
75963316 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGG-TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
75963379 TTGTGCGAGTACTAA
63 TTGTGCGAGTACTAA
* *
75963394 TCC-GCTAAG--CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTT
75963455 GTGCGAGTTACTAAA
65 GTGCGAG-TACT-AA
* *
75963470 TCCGGGTTAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
**
75963535 AACGAGTAGCTATA
66 TGCGAGTA-CTA-A
* * *
75963549 TCCGGTTAAATTCCGAAGG
1 TCCGGGTAAGTCCCGAAGG
75963568 TACGTGATTT
Statistics
Matches: 146, Mismatches: 17, Indels: 21
0.79 0.09 0.11
Matches are distributed among these distances:
73 2 0.01
74 41 0.28
75 11 0.08
76 9 0.06
77 5 0.03
78 6 0.04
79 70 0.48
80 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (77 bp):
TCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTACTAA
Found at i:75968233 original size:21 final size:21
Alignment explanation
Indices: 75968209--75968258 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
75968199 ATGTATTATT
* *
75968209 ATTATTTGTTATTTT-CCTCAA
1 ATTATTTATTATTTTACATC-A
75968230 ATTA-TTATTATTTTACATCA
1 ATTATTTATTATTTTACATCA
75968250 ATTATTTAT
1 ATTATTTAT
75968259 ATTATTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.30, C:0.10, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTATTTATTATTTTACATCA
Found at i:75968284 original size:29 final size:30
Alignment explanation
Indices: 75968230--75968291 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 30
75968220 TTTTCCTCAA
75968230 ATTATTATTATTTTACATCAATTATT-TAT
1 ATTATTATTATTTTACATCAATTATTATAT
*
75968259 ATTATTATTATATTTTCA-C-ATATATTATAT
1 ATTATTATTAT-TTTACATCAAT-TATTATAT
75968289 ATT
1 ATT
75968292 TACTAATTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
28 2 0.07
29 16 0.55
30 11 0.38
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (30 bp):
ATTATTATTATTTTACATCAATTATTATAT
Found at i:75978935 original size:27 final size:28
Alignment explanation
Indices: 75978826--75978948 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
75978816 GAGATTGGCG
* * * *
75978826 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
75978855 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
75978883 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
75978911 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
75978938 CTGAGTGTGCG
1 CTAAGTGTGCG
75978949 GACTTAATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.27
28 47 0.55
29 15 0.18
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:75978938 original size:55 final size:57
Alignment explanation
Indices: 75978826--75978948 Score: 169
Period size: 55 Copynumber: 2.2 Consensus size: 57
75978816 GAGATTGGCG
* * * *
75978826 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
* *
75978883 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
*
75978938 CTGAGTGTGCG
1 CTAAGTGTGCG
75978949 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.39
56 21 0.36
57 15 0.25
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (57 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
Found at i:75978959 original size:27 final size:27
Alignment explanation
Indices: 75978851--75978961 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
75978841 TAAATTGTAC
** * *
75978851 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTGAATATAT
** *
75978879 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
75978907 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
75978934 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
75978961 A
1 A
75978962 CTTTTGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 31 0.41
28 44 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:75986963 original size:27 final size:28
Alignment explanation
Indices: 75986854--75986976 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
75986844 GAGATTGGCG
* * * *
75986854 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
75986883 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
75986911 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
75986939 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
75986966 CTGAGTGTGCG
1 CTAAGTGTGCG
75986977 GACTTAATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.27
28 47 0.55
29 15 0.18
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:75986966 original size:55 final size:57
Alignment explanation
Indices: 75986854--75986976 Score: 169
Period size: 55 Copynumber: 2.2 Consensus size: 57
75986844 GAGATTGGCG
* * * *
75986854 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
* *
75986911 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
*
75986966 CTGAGTGTGCG
1 CTAAGTGTGCG
75986977 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.39
56 21 0.36
57 15 0.25
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (57 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
Found at i:75986987 original size:27 final size:27
Alignment explanation
Indices: 75986879--75986989 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
75986869 TAAATTGTAC
** * *
75986879 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTGAATATAT
** *
75986907 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
75986935 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
75986962 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
75986989 A
1 A
75986990 CTTTGGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 31 0.41
28 44 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:75991925 original size:119 final size:119
Alignment explanation
Indices: 75991707--75992179 Score: 761
Period size: 119 Copynumber: 4.0 Consensus size: 119
75991697 AATTGAAGAC
* * *
75991707 AGCAGATCTAGA-CTTCAGACATTTATGCTAAAGCAGATCCAAGATAATTTGGTATTCTTGTGTT
1 AGCAGATCTA-ACCTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTT
*
75991771 TACAAGAAACAAATCGAGGACATAGCAGATCTGACTCTCAGACGTTCTCAAATAT
65 TACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
* * *
75991826 AACAGATCTAGA-CTTTAGACATTTATGCTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTT
1 AGCAGATCTA-ACCTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTT
75991890 TACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
65 TACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
* **
75991945 AGCAGATCTAACCTTCGGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
1 AGCAGATCTAACCTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
75992010 ACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
66 ACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
**
75992064 AGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
1 AGCAGATCTAACCTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
* * * * *
75992129 ACAAGGAACAAACCGAGGACATAGCAGATTAGACTTTCAGATGTTCTCAAA
66 ACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
75992180 CAGACTCAAG
Statistics
Matches: 336, Mismatches: 17, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
118 1 0.00
119 335 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
AGCAGATCTAACCTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
ACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
Found at i:75992214 original size:83 final size:83
Alignment explanation
Indices: 75992103--75992538 Score: 658
Period size: 83 Copynumber: 5.2 Consensus size: 83
75992093 GAAGCAGATC
* * * * * * *
75992103 CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAACCGAGGACATAGCAGAT-TAGACTTTC
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATAT-GACTCTC
*
75992167 AGATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
75992186 CAAGATGGTTTGGCATCCTTGTGCTTACAAAGAACAAATCGAGGACATTGCATATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
75992251 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
75992269 CAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCGAGGAAATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
75992334 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
75992352 CAAGACGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGTAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
75992417 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
75992435 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
*
75992500 AAATGTTCTCAAGCAGACT
65 AAATGTTCTCAAACAGACT
* * *
75992519 CAAAATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
75992539 ACAAATCGAA
Statistics
Matches: 324, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
83 247 0.76
84 77 0.24
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:75996122 original size:26 final size:26
Alignment explanation
Indices: 75996092--75996143 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
75996082 TCCGTGCAGG
75996092 ATAGTGGATCACTTTCGGGATACATC
1 ATAGTGGATCACTTTCGGGATACATC
*
75996118 ATAGTGGATCATTTTCGGGATACATC
1 ATAGTGGATCACTTTCGGGATACATC
75996144 CATACCTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
ATAGTGGATCACTTTCGGGATACATC
Found at i:76001456 original size:24 final size:24
Alignment explanation
Indices: 76001429--76001542 Score: 144
Period size: 24 Copynumber: 4.7 Consensus size: 24
76001419 AACCAAAATG
76001429 AGAATCAGAATCAGAATTAGTAAC
1 AGAATCAGAATCAGAATTAGTAAC
*
76001453 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATTA-GTAAC
*
76001478 AGAATCAGAATCAGTAA-CAG-AATC
1 AGAATCAGAATCAG-AATTAGTAA-C
*
76001502 AGAATCAGAATCAGTATTAGTAAC
1 AGAATCAGAATCAGAATTAGTAAC
76001526 AGAATC-GAAATCAGAAT
1 AGAATCAG-AATCAGAAT
76001543 CAGAATTACG
Statistics
Matches: 78, Mismatches: 6, Indels: 12
0.81 0.06 0.12
Matches are distributed among these distances:
23 3 0.04
24 52 0.67
25 21 0.27
26 2 0.03
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.20
Consensus pattern (24 bp):
AGAATCAGAATCAGAATTAGTAAC
Found at i:76001523 original size:73 final size:76
Alignment explanation
Indices: 76001429--76001579 Score: 211
Period size: 79 Copynumber: 2.0 Consensus size: 76
76001419 AACCAAAATG
*
76001429 AGAATCAGAATCAGAATTAGTAAC-A-G-AATCAGAATCAGAATTAGGTGACAGAATCAGAATCA
1 AGAATCAGAATCAGAATTAGTAACAACGAAATCAGAATCAGAATTACGTGACAGAATCAGAATCA
76001491 GTAA-CAGAATC
66 G-AATCAGAATC
* *
76001502 AGAATCAGAATCAGTATTAGTAACAGAATCGAAATCAGAATCAGAATTACGTGATAGAATCAGAA
1 AGAATCAGAATCAGAATTAGTAAC--AA-CGAAATCAGAATCAGAATTACGTGACAGAATCAGAA
76001567 TCAGAATCAGAAT
63 TCAGAATCAGAAT
76001580 TACGTGACAG
Statistics
Matches: 68, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
73 23 0.34
76 1 0.01
78 3 0.04
79 41 0.60
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.21
Consensus pattern (76 bp):
AGAATCAGAATCAGAATTAGTAACAACGAAATCAGAATCAGAATTACGTGACAGAATCAGAATCA
GAATCAGAATC
Found at i:76001569 original size:31 final size:30
Alignment explanation
Indices: 76001477--76001598 Score: 165
Period size: 31 Copynumber: 4.0 Consensus size: 30
76001467 AATTAGGTGA
*
76001477 CAGAATCAGAATCAGTAACAGAATCAGAAT
1 CAGAATCAGAATTAGTAACAGAATCAGAAT
*
76001507 CAGAATCAGTATTAGTAACAGAATC-GAAAT
1 CAGAATCAGAATTAGTAACAGAATCAG-AAT
* *
76001537 CAGAATCAGAATTACGTGATAGAATCAGAAT
1 CAGAATCAGAATTA-GTAACAGAATCAGAAT
*
76001568 CAGAATCAGAATTACGTGACAGAATCAGAAT
1 CAGAATCAGAATTA-GTAACAGAATCAGAAT
76001599 GTGAATGCAA
Statistics
Matches: 83, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
29 1 0.01
30 39 0.47
31 42 0.51
32 1 0.01
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (30 bp):
CAGAATCAGAATTAGTAACAGAATCAGAAT
Found at i:76001598 original size:6 final size:6
Alignment explanation
Indices: 76001429--76001579 Score: 125
Period size: 6 Copynumber: 24.8 Consensus size: 6
76001419 AACCAAAATG
* * *
76001429 AGAATC AGAATC AGAATT AGTAA-C AGAATC AGAATC AGAATT AG-GTGAC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAAT--C
* *
76001478 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC
* *
76001526 AGAATC -GAAATC AGAATC AGAATT ACGTGAT- AGAATC AGAATC AGAATC
1 AGAATC AG-AATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
76001575 AGAAT
1 AGAAT
76001580 TACGTGACAG
Statistics
Matches: 118, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
5 10 0.08
6 95 0.81
7 10 0.08
8 3 0.03
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:76001753 original size:27 final size:26
Alignment explanation
Indices: 76001716--76001774 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
76001706 AGCATGGCTG
*
76001716 CCAGAACAGATATCATGACAGAGTCA
1 CCAGAACAGATATCATGACAGAGCCA
** *
76001742 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCATGACAGAGCCA
76001769 CCAGAA
1 CCAGAA
76001775 TCAAATAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATATCATGACAGAGCCA
Found at i:76002002 original size:22 final size:22
Alignment explanation
Indices: 76001954--76002012 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
76001944 GTAAATACGT
*
76001954 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
76001976 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
76001998 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
76002013 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:76002179 original size:27 final size:26
Alignment explanation
Indices: 76002100--76002182 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
76002090 TCGATCGGTC
** * *
76002100 AACAGATATTGTGATAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
76002126 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
76002153 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
76002180 AAC
1 AAC
76002183 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:76002388 original size:27 final size:27
Alignment explanation
Indices: 76002338--76002401 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
76002328 CAGTCACTTG
* *
76002338 CCCACAAGGGCAAAACAGTCATTTAAC
1 CCCATAAGGGCAAAACAGTAATTTAAC
** *
76002365 ACCC-TAAGGGCAAAATGGTAATTTTAC
1 -CCCATAAGGGCAAAACAGTAATTTAAC
76002392 CCCATAAGGG
1 CCCATAAGGG
76002402 TATCTCGGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.10
27 24 0.80
28 3 0.10
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (27 bp):
CCCATAAGGGCAAAACAGTAATTTAAC
Found at i:76002411 original size:27 final size:27
Alignment explanation
Indices: 76002381--76002576 Score: 203
Period size: 27 Copynumber: 7.3 Consensus size: 27
76002371 AGGGCAAAAT
* * * *
76002381 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76002408 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76002435 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
76002462 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
76002489 GGTAATTCTGTCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
76002516 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
76002543 GGAAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76002570 AGTAATT
1 GGTAATT
76002577 TCACAATCAA
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:76002447 original size:54 final size:54
Alignment explanation
Indices: 76002380--76002576 Score: 261
Period size: 54 Copynumber: 3.6 Consensus size: 54
76002370 AAGGGCAAAA
* * * *
76002380 TGGTAATTTTACCCCATAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
* * *
76002434 CGGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTATAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTT
** * *
76002488 TGGTAATTCTGTCCTATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
* *
76002542 TGGAAATTCTACCCTATAGGGGTATTTCAGTAATT
1 TGGTAATTCTACCCTATAAGGGTATTTCAGTAATT
76002577 TCACAATCAA
Statistics
Matches: 123, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 121 0.98
55 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (54 bp):
TGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
Found at i:76002620 original size:27 final size:27
Alignment explanation
Indices: 76002588--76003125 Score: 611
Period size: 27 Copynumber: 19.9 Consensus size: 27
76002578 CACAATCAAT
*
76002588 GGTAAAATGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * * *
76002615 GATAAAACGATAATTTTGTAAA-CTAAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* * * *
76002642 GGTAAACCAGTAATTCTATAAATCAAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*** * ** *
76002669 GGTAAAGTAGTAATTTTACAAATCAAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
76002696 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
76002723 GGTAAAACAGTAATTCTATAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
76002750 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
**
76002777 GGTAAAATAGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
76002804 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
**
76002831 GGTAAAATAGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
76002858 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
76002885 GGTAAAACGATAATTCTGTAAAAT-GAG
1 GGTAAAACGGTAATTCTGT-AAATCGAG
76002912 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* **
76002939 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
76002966 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** * *
76002993 GGTAAAATAGTATTTCTGTAAA-CTGAT
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
76003020 GGTAAAATGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
76003047 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* * **
76003074 GGTAAAATGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
76003101 GGTAAAACAGTAATTCTATAAATCG
1 GGTAAAACGGTAATTCTGTAAATCG
76003126 GGAGTACTTT
Statistics
Matches: 439, Mismatches: 60, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
26 9 0.02
27 421 0.96
28 9 0.02
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
GGTAAAACGGTAATTCTGTAAATCGAG
Found at i:76003142 original size:108 final size:107
Alignment explanation
Indices: 76002588--76003127 Score: 694
Period size: 108 Copynumber: 5.0 Consensus size: 107
76002578 CACAATCAAT
* * * * * * *
76002588 GGTAAAATGGTAATTCTGTAAATCGAGGATAAAACGATAATTTTGTAAACTAAGGGTAAACCAGT
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGT
* * * ** *
76002653 AATTCTATAAATCAAGGGTAAAGTAGTAATTTTACAAATCAAG
66 AATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAATC-GG
* *
76002696 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGT
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGT
76002761 AATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAG
66 AATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCG-G
* **
76002804 GGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGT
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGT
* *
76002869 AATTCTGTAAATCGAGGGTAAAA-CGATAATTCTGTAAAAT-GAG
66 AATTCTATAAATCGAGGGTAAAATAG-TAATTCTGT-AAATCG-G
* *
76002912 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-T-TACAAATCGAGGGTAAAACA
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA-AACT-GAGGGTAAAACG
* *
76002975 GTAATTCTATAAATCGAGGGTAAAATAGTATTTCTGTAAA-CTGAT
64 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAATC-G-G
* *
76003020 GGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAATGGT
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGT
* * * *
76003085 AATTTTACAAATCGAGGGTAAAACAGTAATTCTATAAATCGG
66 AATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGG
76003127 G
1 G
76003128 AGTACTTTGG
Statistics
Matches: 382, Mismatches: 39, Indels: 23
0.86 0.09 0.05
Matches are distributed among these distances:
106 2 0.01
107 9 0.02
108 359 0.94
109 10 0.03
110 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (107 bp):
GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGT
AATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGG
Found at i:76005176 original size:35 final size:35
Alignment explanation
Indices: 76005137--76005209 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
76005127 GGACAATTTT
76005137 AAGATAGTTAAGAGAGAAGTGATGGCTAAATTTGC
1 AAGATAGTTAAGAGAGAAGTGATGGCTAAATTTGC
* *
76005172 AAGATAGTTAAGAGAGAAGTGATGGCTGATTTTGC
1 AAGATAGTTAAGAGAGAAGTGATGGCTAAATTTGC
76005207 AAG
1 AAG
76005210 GGTTCAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.38, C:0.05, G:0.30, T:0.26
Consensus pattern (35 bp):
AAGATAGTTAAGAGAGAAGTGATGGCTAAATTTGC
Found at i:76005774 original size:29 final size:29
Alignment explanation
Indices: 76005732--76005790 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
76005722 AATAAAACAA
76005732 AGGAGTTCTAATGCACGATTTCAAATAAG
1 AGGAGTTCTAATGCACGATTTCAAATAAG
76005761 AGGAGTTCTAATGCACGATTTCAAATAAG
1 AGGAGTTCTAATGCACGATTTCAAATAAG
76005790 A
1 A
76005791 TTTAATCAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (29 bp):
AGGAGTTCTAATGCACGATTTCAAATAAG
Found at i:76007377 original size:19 final size:20
Alignment explanation
Indices: 76007333--76007377 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
76007323 ACCATGTTTA
76007333 TATTTTTAACATATCTTAAT
1 TATTTTTAACATATCTTAAT
76007353 TA-TTTTATA-ATAT-TTAAT
1 TATTTTTA-ACATATCTTAAT
76007371 TATTTTT
1 TATTTTT
76007378 TGACAAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 7 0.30
19 13 0.57
20 3 0.13
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTTTAACATATCTTAAT
Found at i:76011457 original size:32 final size:32
Alignment explanation
Indices: 76011416--76011480 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
76011406 ATACCCCATA
76011416 CATCAAACAATTCTACCTTAATGATGTTTGTT
1 CATCAAACAATTCTACCTTAATGATGTTTGTT
76011448 CATCAAACAATTCTACCTTAATGATGTTTGTT
1 CATCAAACAATTCTACCTTAATGATGTTTGTT
76011480 C
1 C
76011481 GAGGCATCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (32 bp):
CATCAAACAATTCTACCTTAATGATGTTTGTT
Found at i:76018960 original size:39 final size:39
Alignment explanation
Indices: 76018899--76019145 Score: 397
Period size: 39 Copynumber: 6.3 Consensus size: 39
76018889 CGGGACTTTA
* * *
76018899 AGCCCGAATATAATACCAGCACGAATGCCTTTGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
*
76018938 AGCCTGGATATAACACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
* *
76018977 AGCCCGGATATAACACCAGCACAAATGCCTTCAGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
*
76019016 AGCTCGGATATAACACCAGCACGAATGCCTTCGGGAG-TT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGG-GCTT
*
76019055 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
*
76019094 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
76019133 AGCCCGGATATAA
1 AGCCCGGATATAA
76019146 TTCTCCATTA
Statistics
Matches: 194, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 193 0.99
40 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.19
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
Found at i:76023197 original size:40 final size:40
Alignment explanation
Indices: 76023110--76023240 Score: 171
Period size: 39 Copynumber: 3.3 Consensus size: 40
76023100 GCTACTCGTT
*
76023110 CAAATGCCTTCGGGACATAGCCCG--TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATT-TAGTAACTCGCA
* * *
76023149 CAATTGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCG
1 CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCA
*
76023189 CAAATGCCTTCGGG-CTTAGCCCGGAA-TTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTTAGTAACTCGCA
76023228 CAAATGCCTTCGG
1 CAAATGCCTTCGG
76023241 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
39 52 0.64
40 27 0.33
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCA
Found at i:76254999 original size:27 final size:27
Alignment explanation
Indices: 76254968--76255145 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
76254958 TAAATTGTAC
76254968 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
76254995 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76255021 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
76255049 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
76255077 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76255104 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
76255131 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76255146 GACTCAATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:76255082 original size:82 final size:81
Alignment explanation
Indices: 76254969--76255124 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
76254959 AAATTGTACA
*
76254969 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
76255033 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
76255050 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
76255115 TGCGAGTTGA
65 TGCGAATTGA
76255125 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:76255136 original size:82 final size:81
Alignment explanation
Indices: 76254965--76255145 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
76254955 GATTAAATTG
*
76254965 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
76255030 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
76255046 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
76255110 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
76255128 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
76255146 GACTCAATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:76261822 original size:54 final size:55
Alignment explanation
Indices: 76261718--76261824 Score: 171
Period size: 55 Copynumber: 2.0 Consensus size: 55
76261708 AAGGAAAAAC
** *
76261718 AAAAAAAAAATGTTCATCTTTTATCATCCTTGGCCGAATGTTCTAAAGAAGAAAG
1 AAAAAAAAAATGTTCATCTTTTATCATCCTTGGCCGAAAATGCTAAAGAAGAAAG
*
76261773 AAAAAAAAATTGTTCATCTTTTATCATCCTTGGCCGAAAATGCT-AAGAAGAA
1 AAAAAAAAAATGTTCATCTTTTATCATCCTTGGCCGAAAATGCTAAAGAAGAA
76261825 GGGGGAAGGG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
54 8 0.17
55 40 0.83
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (55 bp):
AAAAAAAAAATGTTCATCTTTTATCATCCTTGGCCGAAAATGCTAAAGAAGAAAG
Found at i:76262888 original size:27 final size:27
Alignment explanation
Indices: 76262857--76263034 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76262847 TAAATTGTAC
*
76262857 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
76262884 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
76262910 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
76262938 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
76262965 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
76262993 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
76263020 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76263035 GACTTAATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 25 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:76262918 original size:54 final size:55
Alignment explanation
Indices: 76262857--76263034 Score: 227
Period size: 54 Copynumber: 3.3 Consensus size: 55
76262847 TAAATTGTAC
* **
76262857 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
76262912 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* *
76262965 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
76263020 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76263035 GACTTAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 45 0.42
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:76266435 original size:18 final size:19
Alignment explanation
Indices: 76266414--76266455 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
76266404 AAGTAATTTC
* *
76266414 AAAATATAAATAAAGA-TA
1 AAAATATAAAAAAAAAGTA
76266432 AAAAT-TAAAAAAAAAGTA
1 AAAATATAAAAAAAAAGTA
76266450 AAAATA
1 AAAATA
76266456 AATAATAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (19 bp):
AAAATATAAAAAAAAAGTA
Found at i:76266440 original size:17 final size:18
Alignment explanation
Indices: 76266414--76266460 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
76266404 AAGTAATTTC
*
76266414 AAAATATAAATAAAGA-TA
1 AAAAT-TAAATAAAAAGTA
*
76266432 AAAATTAAAAAAAAAGTA
1 AAAATTAAATAAAAAGTA
76266450 AAAA-TAAATAA
1 AAAATTAAATAA
76266461 TAGGTGTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (18 bp):
AAAATTAAATAAAAAGTA
Found at i:76279862 original size:10 final size:12
Alignment explanation
Indices: 76279834--76279864 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
76279824 ATGGGGTAGA
76279834 CCGTGTGTCTGC
1 CCGTGTGTCTGC
76279846 CCGTGTGTCTGC
1 CCGTGTGTCTGC
*
76279858 CTGTGTG
1 CCGTGTG
76279865 GACAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.29, G:0.35, T:0.35
Consensus pattern (12 bp):
CCGTGTGTCTGC
Found at i:76281208 original size:6 final size:6
Alignment explanation
Indices: 76281190--76281264 Score: 55
Period size: 6 Copynumber: 12.3 Consensus size: 6
76281180 AAGAAACATT
* * * * *
76281190 ATCAGA A-CTAGA ATGAGA ATCAGA AACAGA ATTAGA ATCAAA ATCAGT
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
*
76281238 ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
76281265 GTGAATGCAA
Statistics
Matches: 52, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
5 3 0.06
6 45 0.87
7 3 0.06
8 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:76282350 original size:27 final size:27
Alignment explanation
Indices: 76282259--76282342 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
76282249 GGGCATATTC
* *
76282259 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
76282286 GTCACTTTACCCTACAGGGGCTTTACA
1 GTCACTTTACCCTACAGGGGCTTTACG
76282313 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
76282340 GTC
1 GTC
76282343 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:76282434 original size:27 final size:27
Alignment explanation
Indices: 76282404--76282511 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
76282394 GCAAATCTAC
76282404 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
76282431 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* **
76282457 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
76282487 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
76282512 AAAAACTAGG
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 42 0.62
28 7 0.10
29 17 0.25
30 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:76282509 original size:56 final size:55
Alignment explanation
Indices: 76282404--76282536 Score: 137
Period size: 56 Copynumber: 2.4 Consensus size: 55
76282394 GCAAATCTAC
* * *
76282404 AAAC-CAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTTTAG
1 AAACTCAAGGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTCTATAA-TTTTAA
* * * * *
76282459 AAAGTCAAGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTT-TGGTAATTTTAA
1 AAACTCAAGGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTCT-ATAATTTTAA
* *
76282514 AAACT-AGGGGTATTTTGGTAATT
1 AAACTCAAGGGTATTTTAGTAATT
76282537 CTATCCTACA
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
54 16 0.25
55 13 0.20
56 36 0.55
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (55 bp):
AAACTCAAGGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTCTATAATTTTAA
Found at i:76282522 original size:27 final size:27
Alignment explanation
Indices: 76282453--76282536 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 27
76282443 TTTCTATAAT
* * *
76282453 TTTTAGAAAGTCAAGGGTATTTTTGTAA
1 TTTTA-AAAATCAGGGGTATTTTGGTAA
**
76282481 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTAAAAATCAGGGGTATTTTGGTAA
76282508 TTTTAAAAA-CTAGGGGTATTTTGGTAA
1 TTTTAAAAATC-AGGGGTATTTTGGTAA
76282535 TT
1 TT
76282537 CTATCCTACA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.02
27 43 0.90
28 4 0.08
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.44
Consensus pattern (27 bp):
TTTTAAAAATCAGGGGTATTTTGGTAA
Found at i:76282604 original size:27 final size:27
Alignment explanation
Indices: 76282568--76282712 Score: 177
Period size: 27 Copynumber: 5.4 Consensus size: 27
76282558 GTAATTTCAC
*
76282568 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
76282595 AATCTAGGGTAAAATGATAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
76282622 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
76282649 AATTGAGGGTAAAA-TAGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
* * *
76282676 AATCGGGGGTAAAACGGTAATTCTGTC
1 AATCGAGGGTAAAACGATAATTCTGTA
76282703 AATCG-GGGTA
1 AATCGAGGGTA
76282713 CTTTGGTAAT
Statistics
Matches: 100, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
26 5 0.05
27 95 0.95
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:76282637 original size:54 final size:55
Alignment explanation
Indices: 76282568--76282706 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 55
76282558 GTAATTTCAC
*
76282568 AATCGAGGGTAAAACGATAATTTTGTAAATCT-AGGGTAAAAT-GATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCTGAGGGTAAAATAG-TAATTCTGTA
76282622 AATCGAGGGTAAAACGGTAATTTTGTAAAT-TGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCTGAGGGTAAAATAGTAATTCTGTA
* * *
76282676 AATCGGGGGTAAAACGGTAATTCTGTCAATC
1 AATCGAGGGTAAAACGGTAATTTTGTAAATC
76282707 GGGGTACTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
53 1 0.01
54 76 0.97
55 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (55 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATCTGAGGGTAAAATAGTAATTCTGTA
Found at i:76286099 original size:49 final size:49
Alignment explanation
Indices: 76286038--76286216 Score: 202
Period size: 49 Copynumber: 3.6 Consensus size: 49
76286028 GTACGCATAA
* *
76286038 TAGCCTGTACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAG
** * *
76286087 TAGCCTGCACTTAGTACTACCACA--TGACCTAACCATCTGATACACGTAG
1 TAGCCTGCACTTAGTACTA-CACATGTGACC-AATTATCCGGTACACGTAG
* * * *
76286136 TAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAT-CGAGTACGCATAG
1 TAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCG-GTACACGTAG
76286187 TAGCCTGCACTTAGTACTACACATGTGACC
1 TAGCCTGCACTTAGTACTACACATGTGACC
76286217 TCACAATAGA
Statistics
Matches: 108, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
48 8 0.07
49 52 0.48
50 11 0.10
51 37 0.34
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAG
Found at i:76291274 original size:49 final size:49
Alignment explanation
Indices: 76291210--76291393 Score: 217
Period size: 49 Copynumber: 3.7 Consensus size: 49
76291200 TAGCCAAAGC
* * * * *
76291210 TATCTAGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAAT
1 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
76291259 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
76291309 CAT-CTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCAG-TACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* *
76291360 TATCAAGTACGCATAGTAGCCTGCACTTAGTACT
1 TATCCAGTACACATAGTAGCCTGCACTTAGTACT
76291394 TAACATGTGA
Statistics
Matches: 114, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
49 43 0.38
50 42 0.37
51 28 0.25
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (49 bp):
TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:76291336 original size:50 final size:49
Alignment explanation
Indices: 76291215--76291393 Score: 198
Period size: 50 Copynumber: 3.6 Consensus size: 49
76291205 AAAGCTATCT
* * * * **
76291215 AGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAATTATCC
1 AGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCC
76291264 AGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-C
1 AGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCC
* * * ** *
76291313 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCA
1 AG-TACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CCATCC
*
76291365 AGTACGCATAGTAGCCTGCACTTAGTACT
1 AGTACACATAGTAGCCTGCACTTAGTACT
76291394 TAACATGTGA
Statistics
Matches: 110, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
49 39 0.35
50 42 0.38
51 28 0.25
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
AGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCC
Found at i:76298490 original size:37 final size:37
Alignment explanation
Indices: 76298449--76298587 Score: 143
Period size: 37 Copynumber: 3.8 Consensus size: 37
76298439 TTATGATGAC
* *
76298449 CCGCTAGACTTATCCTTATGTTCCAAGTTAAGACAGT
1 CCGCTGGACTTGTCCTTATGTTCCAAGTTAAGACAGT
* * *
76298486 CCGCTGGACTTGTCCTTATATTCCAAATTAAGATAGT
1 CCGCTGGACTTGTCCTTATGTTCCAAGTTAAGACAGT
* * ** *
76298523 CCGCTGGACTTGTCCTCATGTACCAAGTTTTGACGGT
1 CCGCTGGACTTGTCCTTATGTTCCAAGTTAAGACAGT
* * * * *
76298560 CCGTTGGATTTTTCCTCATGTCCCAAGT
1 CCGCTGGACTTGTCCTTATGTTCCAAGT
76298588 CATAAAAATT
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.35
Consensus pattern (37 bp):
CCGCTGGACTTGTCCTTATGTTCCAAGTTAAGACAGT
Found at i:76300414 original size:49 final size:49
Alignment explanation
Indices: 76300350--76300479 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 49
76300340 GTTATGTGTC
* * * *
76300350 AGTGTAAGACTTGTCTGGGACATGGCATCGACACCGATGGATGAGAG-CT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGAC-CCGATAGATGAAAGTCT
* * * *
76300399 AGTGTAAGACCTGTCTAGGACATGGCATCAGTCTCGTTATATGAAAGTCT
1 AGTGTAAGACCTGTCTAGGACATGGCATC-GACCCGATAGATGAAAGTCT
*
76300449 A-TGTAAGACCTGTTTAGGACATGGCATCGAC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGAC
76300480 TTAATGTGTT
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
48 2 0.03
49 62 0.90
50 5 0.07
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGACCCGATAGATGAAAGTCT
Found at i:76307504 original size:39 final size:40
Alignment explanation
Indices: 76307450--76307587 Score: 208
Period size: 40 Copynumber: 3.5 Consensus size: 40
76307440 AAACCAAGTA
* * * *
76307450 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
76307489 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76307529 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76307569 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
76307588 TTATCATTCG
Statistics
Matches: 91, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 13 0.14
40 78 0.86
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76307527 original size:40 final size:40
Alignment explanation
Indices: 76307483--76307591 Score: 209
Period size: 40 Copynumber: 2.7 Consensus size: 40
76307473 GCTACTTGCT
76307483 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
76307523 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
76307563 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
76307592 CATTCGAATA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:76315550 original size:40 final size:40
Alignment explanation
Indices: 76315506--76315654 Score: 246
Period size: 40 Copynumber: 3.7 Consensus size: 40
76315496 GCTACTTGCT
76315506 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
76315546 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
76315586 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
76315626 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
76315655 CATCCGAATA
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 100 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:76315605 original size:80 final size:80
Alignment explanation
Indices: 76315473--76315650 Score: 254
Period size: 80 Copynumber: 2.2 Consensus size: 80
76315463 AAACCAAGTA
* * * * *
76315473 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGG-TTATA
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
*
76315536 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
76315552 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
*
76315616 GTCACTAGCACAAATG
65 GTAACTAGCACAAATG
76315632 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
76315651 TTATCATCCG
Statistics
Matches: 89, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
79 13 0.15
80 75 0.84
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
TAACTAGCACAAATG
Found at i:76319545 original size:33 final size:33
Alignment explanation
Indices: 76319498--76319569 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
76319488 GCCTTATTAC
76319498 ATAAATTAAAACCCAAAACGAAATCTAATAGCA
1 ATAAATTAAAACCCAAAACGAAATCTAATAGCA
* *
76319531 ATAAGTTAAAACCCAAAATGAAATCTAATAGCAA
1 ATAAATTAAAACCCAAAACGAAATCTAATAGC-A
76319565 ATAAA
1 ATAAA
76319570 AGAAACAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 30 0.86
34 5 0.14
ACGTcount: A:0.58, C:0.15, G:0.07, T:0.19
Consensus pattern (33 bp):
ATAAATTAAAACCCAAAACGAAATCTAATAGCA
Found at i:76320571 original size:8 final size:8
Alignment explanation
Indices: 76320555--76320597 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
76320545 AAGGCCACTC
76320555 TTTCGGCT
1 TTTCGGCT
*
76320563 TTTCAGCT
1 TTTCGGCT
76320571 TTTCGGCT
1 TTTCGGCT
*
76320579 TTTTGGCT
1 TTTCGGCT
*
76320587 TTTCAGCT
1 TTTCGGCT
76320595 TTT
1 TTT
76320598 GTCGTTCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.05, C:0.21, G:0.19, T:0.56
Consensus pattern (8 bp):
TTTCGGCT
Found at i:76323792 original size:46 final size:46
Alignment explanation
Indices: 76323728--76323998 Score: 174
Period size: 46 Copynumber: 5.8 Consensus size: 46
76323718 TGACATTGGG
* *
76323728 TGATATGCGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCAT
1 TGATATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGC-T
*
76323774 TGATATGAGAGCTAGTGTAAGACATATCTGGGACAT-GCATCGGCCT
1 TGATATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGG-CT
* * * * *
76323820 CTAGATAT-ACAAGCTAGTGTAATACCTGTCTAGGACATGGCATCAGCT
1 -T-GATATGA-GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCT
* * * * * * * * *
76323868 TGTTATGTG-TC-AATGTAAGACATGTCTAGGATATGGCATTGACAC
1 TGATATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGC-T
* * * * * *
76323913 CGATAGATGAGATCCAGTGTAAGACCTGTCTGGGACATGGCATTGACT
1 TGAT--ATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCT
* * ** *
76323961 AGATGTGTTAGCCAGTGTAAGACCATGTCTGGGACATG
1 TGATATGAGAGCTAGTGTAAGA-CATGTCTGGGACATG
76323999 ACATTGGCGT
Statistics
Matches: 178, Mismatches: 35, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
44 25 0.14
45 3 0.02
46 59 0.33
47 22 0.12
48 35 0.20
49 34 0.19
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (46 bp):
TGATATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCT
Found at i:76325741 original size:26 final size:26
Alignment explanation
Indices: 76325673--76325732 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
76325663 TCTCATCAAA
*
76325673 ATTTTA-CTCTAATAAAATTTTGACG
1 ATTTTACCCCTAATAAAATTTTGACG
*
76325698 ATTTTACCCCTAATAAAATTTTGATG
1 ATTTTACCCCTAATAAAATTTTGACG
76325724 ATTTTACCC
1 ATTTTACCC
76325733 TCGGTAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 6 0.19
26 26 0.81
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (26 bp):
ATTTTACCCCTAATAAAATTTTGACG
Found at i:76330710 original size:70 final size:70
Alignment explanation
Indices: 76330623--76330762 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
76330613 AATCCTAGAT
76330623 ATTTAACCATCTTTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
1 ATTTAACCATCTTTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
76330688 CCTTC
66 CCTTC
76330693 ATTTAACCATCTTTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
1 ATTTAACCATCTTTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
76330758 CCTTC
66 CCTTC
76330763 TTCTCCTTAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.50
Consensus pattern (70 bp):
ATTTAACCATCTTTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
CCTTC
Found at i:76332830 original size:26 final size:26
Alignment explanation
Indices: 76332801--76332882 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
76332791 TGGTACAAAT
76332801 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
76332827 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76332853 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76332879 TGAT
1 TGAT
76332883 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:76339268 original size:46 final size:46
Alignment explanation
Indices: 76339094--76339275 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
76339084 TTTGACGTGA
* * * * *
76339094 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
76339140 TGCCACGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76339186 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76339232 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
76339276 AGAGCACACT
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.03
46 119 0.97
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:76341373 original size:11 final size:11
Alignment explanation
Indices: 76341357--76341404 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
76341347 CTTTATATAC
76341357 TAATAAAATAA
1 TAATAAAATAA
*
76341368 TAATAAAATATTT
1 TAATAAAATA--A
* *
76341381 TATTAAAATAT
1 TAATAAAATAA
76341392 TAATAAAATAA
1 TAATAAAATAA
76341403 TA
1 TA
76341405 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:76342133 original size:141 final size:140
Alignment explanation
Indices: 76341879--76342422 Score: 492
Period size: 140 Copynumber: 4.0 Consensus size: 140
76341869 TCAGGGTATT
*
76341879 ACACTTTTGGGCCGAAACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAACT
1 ACACTTTTGGGCCGAAACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAACC
* * ** *
76341944 CTTTATATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAA
66 CTTTATATAAGAGTTGGGATATACATACCTAAAACAACGCTTAAATAAGAGTCAGCTTTGTCCAA
76342009 CACTATG-CTG
131 CACTATGTC-G
* ** *
76342019 ACACTTTTGGGCCGACACTTTTCCTAAGTGTTGGGATAGACTTGTTGATATATACTTTGGCCAAC
1 ACACTTTTGGGCCGAAAC-TTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAAC
* * * *
76342084 CCTTTATATAAGAGTTGGGATATACATACCTAAAACAACGTTTATATAAGAGTCATCTTTGTTCA
65 CCTTTATATAAGAGTTGGGATATACATACCTAAAACAACGCTTAAATAAGAGTCAGCTTTGTCCA
76342149 ACACTATGTCG
130 ACACTATGTCG
* * * ** ** *
76342160 ACAC---T----------TTT-CTGAGTGTTGGGGTAGACTTGTCGGCATACGTTTTGGCCAACT
1 ACACTTTTGGGCCGAAACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAACC
* * ** * * ** *
76342211 CTTTGTATAAGAGTTGGTATATGTATGCCTAAGACAATACTTAAATAAGAGTCGGCTTTGTCCAA
66 CTTTATATAAGAGTTGGGATATACATACCTAAAACAACGCTTAAATAAGAGTCAGCTTTGTCCAA
* *
76342276 TACTATGCCG
131 CACTATGTCG
** * * **
76342286 ACACTTTTACG-CTAACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATATGCTTTGGCCAAC
1 ACACTTTTGGGCCGAA-ACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAAC
** * * * * ** * *
76342350 TTTTTGTATAAG-GATCGGGATATGCATGCCTAAGGCAACGCTAAAATAAGAGTCAGTTTTGTCC
65 CCTTTATATAAGAG-TTGGGATATACATACCTAAAACAACGCTTAAATAAGAGTCAGCTTTGTCC
76342414 AACACTATG
129 AACACTATG
76342423 CCAACTTGTG
Statistics
Matches: 332, Mismatches: 55, Indels: 34
0.79 0.13 0.08
Matches are distributed among these distances:
126 98 0.30
127 3 0.01
129 1 0.00
138 1 0.00
139 4 0.01
140 113 0.34
141 111 0.33
142 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (140 bp):
ACACTTTTGGGCCGAAACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAACC
CTTTATATAAGAGTTGGGATATACATACCTAAAACAACGCTTAAATAAGAGTCAGCTTTGTCCAA
CACTATGTCG
Found at i:76343382 original size:14 final size:14
Alignment explanation
Indices: 76343365--76343413 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
76343355 ATCTAAATAA
76343365 TTTAGTGTTTAAGG
1 TTTAGTGTTTAAGG
76343379 TTTA-TGATTTAAGG
1 TTTAGTG-TTTAAGG
* * *
76343393 TTTATTGTTTATGA
1 TTTAGTGTTTAAGG
76343407 TTTAGTG
1 TTTAGTG
76343414 ATTATGATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 2 0.07
14 26 0.87
15 2 0.07
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.55
Consensus pattern (14 bp):
TTTAGTGTTTAAGG
Found at i:76343388 original size:21 final size:21
Alignment explanation
Indices: 76343364--76343439 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 21
76343354 TATCTAAATA
76343364 ATTTAGTGTTTAAGGTTTATG
1 ATTTAGTGTTTAAGGTTTATG
**
76343385 ATTTAAG-GTTTATTGTTTATG
1 ATTT-AGTGTTTAAGGTTTATG
* * *
76343406 ATTTAGTGATTATGATTTAT-
1 ATTTAGTGTTTAAGGTTTATG
*
76343426 AGTTTAGGGTTTAA
1 A-TTTAGTGTTTAA
76343440 AATTTTAAGT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
20 3 0.07
21 39 0.89
22 2 0.05
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.53
Consensus pattern (21 bp):
ATTTAGTGTTTAAGGTTTATG
Found at i:76344975 original size:15 final size:15
Alignment explanation
Indices: 76344955--76344983 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
76344945 GTGATTAAAA
76344955 TGTAAGTATTTATGC
1 TGTAAGTATTTATGC
76344970 TGTAAGTATTTATG
1 TGTAAGTATTTATG
76344984 TTCGCTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48
Consensus pattern (15 bp):
TGTAAGTATTTATGC
Found at i:76347332 original size:16 final size:16
Alignment explanation
Indices: 76347313--76347343 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76347303 AAACAGAGTA
*
76347313 TTTTTTTAACAGTTTG
1 TTTTTATAACAGTTTG
76347329 TTTTTATAACAGTTT
1 TTTTTATAACAGTTT
76347344 ATTGATTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.06, G:0.10, T:0.61
Consensus pattern (16 bp):
TTTTTATAACAGTTTG
Found at i:76348264 original size:36 final size:36
Alignment explanation
Indices: 76348183--76348336 Score: 134
Period size: 36 Copynumber: 4.2 Consensus size: 36
76348173 AAAAGTATAT
* * * * **
76348183 AACCTTTTTAAGGGTTGCCTTAGACAAGGTCTATCTT
1 AACCTTTTTTAGAGTTGTCTTAGAC-GGGTCTATCCC
* *
76348220 AGCC-TTTTTAGAGTTGTTTTAGACGGGTCTATCCC
1 AACCTTTTTTAGAGTTGTCTTAGACGGGTCTATCCC
* ** *
76348255 AACCTTTTTTAAGGGTTGTCTTAGACAAAGTTTATCCC
1 AACCTTTTTT-AGAGTTGTCTTAGAC-GGGTCTATCCC
*
76348293 AA-CTTTTTTA-AGATTGTCTTAGACGGATCTATCCC
1 AACCTTTTTTAGAG-TTGTCTTAGACGGGTCTATCCC
76348328 AACCTTTTT
1 AACCTTTTT
76348337 CAAAATCACA
Statistics
Matches: 93, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
35 21 0.23
36 39 0.42
37 23 0.25
38 10 0.11
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.40
Consensus pattern (36 bp):
AACCTTTTTTAGAGTTGTCTTAGACGGGTCTATCCC
Found at i:76348278 original size:73 final size:73
Alignment explanation
Indices: 76348183--76348336 Score: 204
Period size: 73 Copynumber: 2.1 Consensus size: 73
76348173 AAAAGTATAT
* ** * *
76348183 AACC-TTTTTAAGGGTTGCCTTAGACAAGGTCTATCTTAGCCTTTTT-AGAGTTGTTTTAGACGG
1 AACCTTTTTTAAGGGTTGCCTTAGACAAAGTCTATCCCAACCTTTTTAAGA-TTGTCTTAGACGG
*
76348246 GTCTATCCC
65 ATCTATCCC
* * *
76348255 AACCTTTTTTAAGGGTTGTCTTAGACAAAGTTTATCCCAACTTTTTTAAGATTGTCTTAGACGGA
1 AACCTTTTTTAAGGGTTGCCTTAGACAAAGTCTATCCCAACCTTTTTAAGATTGTCTTAGACGGA
76348320 TCTATCCC
66 TCTATCCC
76348328 AACCTTTTT
1 AACCTTTTT
76348337 CAAAATCACA
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
72 4 0.06
73 64 0.90
74 3 0.04
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.40
Consensus pattern (73 bp):
AACCTTTTTTAAGGGTTGCCTTAGACAAAGTCTATCCCAACCTTTTTAAGATTGTCTTAGACGGA
TCTATCCC
Found at i:76348299 original size:37 final size:37
Alignment explanation
Indices: 76348143--76348336 Score: 150
Period size: 37 Copynumber: 5.4 Consensus size: 37
76348133 TGGACGGGTT
* * * *
76348143 TATCCCAACTTTTTTAAAGGTTGTTTTAGAAAAAGTA
1 TATCCCAACTTTTTTAAGGGTTGTCTTAGACAAAGTC
* * *
76348180 TAT---AACCTTTTTAAGGGTTGCCTTAGACAAGGTC
1 TATCCCAACTTTTTTAAGGGTTGTCTTAGACAAAGTC
** * * * * **
76348214 TATCTTAGCCTTTTT-AGAGTTGTTTTAGAC-GGGTC
1 TATCCCAACTTTTTTAAGGGTTGTCTTAGACAAAGTC
*
76348249 TATCCCAACCTTTTTTAAGGGTTGTCTTAGACAAAGTT
1 TATCCCAA-CTTTTTTAAGGGTTGTCTTAGACAAAGTC
* **
76348287 TATCCCAACTTTTTTAA-GATTGTCTTAGACGGA-TC
1 TATCCCAACTTTTTTAAGGGTTGTCTTAGACAAAGTC
*
76348322 TATCCCAACCTTTTT
1 TATCCCAACTTTTTT
76348337 CAAAATCACA
Statistics
Matches: 125, Mismatches: 26, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
34 27 0.22
35 24 0.19
36 31 0.25
37 33 0.26
38 10 0.08
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.41
Consensus pattern (37 bp):
TATCCCAACTTTTTTAAGGGTTGTCTTAGACAAAGTC
Found at i:76348422 original size:38 final size:38
Alignment explanation
Indices: 76348341--76348425 Score: 107
Period size: 38 Copynumber: 2.2 Consensus size: 38
76348331 CTTTTTCAAA
* * * * *
76348341 ATCACAACCTTTTTCAAAGGTTGGCCTTGATTAGGTCT
1 ATCACAACCTTTTTCAAAGGTCGGCATTGACTAAGTAT
*
76348379 ATCACAACCTTTTTTAAAGGTCGGCATTGACTAAGTAT
1 ATCACAACCTTTTTCAAAGGTCGGCATTGACTAAGTAT
*
76348417 TTCACAACC
1 ATCACAACC
76348426 CTTCAATAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.34
Consensus pattern (38 bp):
ATCACAACCTTTTTCAAAGGTCGGCATTGACTAAGTAT
Found at i:76348710 original size:30 final size:29
Alignment explanation
Indices: 76348661--76348739 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 29
76348651 TAATTAATTA
** *
76348661 AATT-TTTAAAAAATAAAAAAAGTATTAAG
1 AATTATTTAAAATTTAAAAAGAGTA-TAAG
* *
76348690 AATTATTTAAACATTTAAAAAGATTATAAT
1 AATTATTTAAA-ATTTAAAAAGAGTATAAG
*
76348720 AATTATTTAAATTTTAAAAA
1 AATTATTTAAAATTTAAAAA
76348740 TGATAAAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
29 12 0.29
30 20 0.48
31 10 0.24
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.38
Consensus pattern (29 bp):
AATTATTTAAAATTTAAAAAGAGTATAAG
Found at i:76351715 original size:16 final size:17
Alignment explanation
Indices: 76351696--76351731 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
76351686 TGAATGAAAT
76351696 AAAATA-TTTTATGTTA
1 AAAATATTTTTATGTTA
*
76351712 AAAATATTTTTATTTTA
1 AAAATATTTTTATGTTA
76351729 AAA
1 AAA
76351732 TTTATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
AAAATATTTTTATGTTA
Found at i:76351732 original size:16 final size:16
Alignment explanation
Indices: 76351695--76351732 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
76351685 ATGAATGAAA
76351695 TAAAATATTTTATGTT
1 TAAAATATTTTATGTT
*
76351711 AAAAATATTTTTAT-TT
1 TAAAATA-TTTTATGTT
76351727 TAAAAT
1 TAAAAT
76351733 TTATTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TAAAATATTTTATGTT
Found at i:76352112 original size:20 final size:19
Alignment explanation
Indices: 76352075--76352114 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
76352065 AAAATTTTTA
* *
76352075 AAAATTTTTAATTTAATTT
1 AAAATTTTTAAATAAATTT
76352094 AAAATTTTTAAAATAAATTT
1 AAAATTTTT-AAATAAATTT
76352114 A
1 A
76352115 CTATAATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
AAAATTTTTAAATAAATTT
Found at i:76355548 original size:5 final size:5
Alignment explanation
Indices: 76355538--76355562 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
76355528 TGAGTTAAAG
76355538 TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT
76355563 GATAAATTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
TATGT
Found at i:76359135 original size:43 final size:41
Alignment explanation
Indices: 76359087--76359183 Score: 113
Period size: 43 Copynumber: 2.3 Consensus size: 41
76359077 TCCCGGATAT
*
76359087 GGTCTTACATGCTATCACATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATGCTATCAC-T-TCGATGCCAATGTCCCAGACAG
** * *
76359130 GGTCTTACACATTTTCTCACTTCGATGCCAATGTCCCAGACAT
1 GGTCTT--ACATGCTATCACTTCGATGCCAATGTCCCAGACAG
76359173 GGTCTTACATG
1 GGTCTTACATG
76359184 AATCACACAT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
41 4 0.09
43 32 0.70
44 1 0.02
45 9 0.20
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (41 bp):
GGTCTTACATGCTATCACTTCGATGCCAATGTCCCAGACAG
Found at i:76372571 original size:21 final size:21
Alignment explanation
Indices: 76372533--76372585 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
76372523 ATGTGCATAT
*
76372533 TTATTATTATTCTTTTTATCA
1 TTATTATTATTCTCTTTATCA
*
76372554 TTATTATTA-TCTACTTTATTA
1 TTATTATTATTCT-CTTTATCA
76372575 TTTATT-TTATT
1 -TTATTATTATT
76372586 TTTCTTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 3 0.11
21 18 0.67
22 6 0.22
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.68
Consensus pattern (21 bp):
TTATTATTATTCTCTTTATCA
Found at i:76380561 original size:26 final size:26
Alignment explanation
Indices: 76380525--76380575 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
76380515 ACTTTATGAT
* *
76380525 TTCATGCATGTATAAATATAAACCAC
1 TTCATGCATGTAAAAAGATAAACCAC
76380551 TTCATGCATGTAAAAAGATAAACCA
1 TTCATGCATGTAAAAAGATAAACCA
76380576 AACTTCAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (26 bp):
TTCATGCATGTAAAAAGATAAACCAC
Found at i:76382398 original size:6 final size:6
Alignment explanation
Indices: 76382389--76382416 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
76382379 TGGTTTCAAC
76382389 AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA
76382417 AACTCAACGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:76383011 original size:13 final size:12
Alignment explanation
Indices: 76382981--76383024 Score: 56
Period size: 13 Copynumber: 3.8 Consensus size: 12
76382971 TATTCCTAGA
76382981 AAAATA-ATTAT
1 AAAATATATTAT
76382992 AAAATATATCTAT
1 AAAATATAT-TAT
*
76383005 AATATATATTAT
1 AAAATATATTAT
76383017 AAAA-ATAT
1 AAAATATAT
76383025 GAGTTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 10 0.34
12 8 0.28
13 11 0.38
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (12 bp):
AAAATATATTAT
Found at i:76386520 original size:15 final size:15
Alignment explanation
Indices: 76386480--76386522 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
76386470 TATTATTGCT
**
76386480 ATTATTATCATTATC
1 ATTATTATTTTTATC
76386495 ATTATTATTTTTATC
1 ATTATTATTTTTATC
*
76386510 ATTATTCTTTTTA
1 ATTATTATTTTTA
76386523 ACTGTTTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTATC
Found at i:76386666 original size:21 final size:21
Alignment explanation
Indices: 76386596--76386674 Score: 61
Period size: 22 Copynumber: 3.5 Consensus size: 21
76386586 CTCTTTTAGT
76386596 TTTTATTTGTTTATTTAT-TTA
1 TTTTATTT-TTTATTTATCTTA
** *
76386617 TTATTGCTTTTTATTTAATTGGCTCA
1 TT-TTATTTTTTATTT-A-T--CTTA
76386643 TTTTATTTTTTATTTATCTTA
1 TTTTATTTTTTATTTATCTTA
76386664 TTTTTATTTTT
1 -TTTTATTTTT
76386675 GCCCTTATCA
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
21 12 0.27
22 15 0.33
23 2 0.04
24 1 0.02
25 11 0.24
26 4 0.09
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.72
Consensus pattern (21 bp):
TTTTATTTTTTATTTATCTTA
Found at i:76390898 original size:22 final size:22
Alignment explanation
Indices: 76390870--76391000 Score: 124
Period size: 22 Copynumber: 5.9 Consensus size: 22
76390860 GAGTTATGGT
76390870 CAGTAAGCTC-ATTCGAGCTGAA
1 CAGTAAGCTCTATT-GAGCTGAA
76390892 CAGTAAGCTCTATTGAGCTGAA
1 CAGTAAGCTCTATTGAGCTGAA
* * *
76390914 -ATGGTAAGCCCTAATGAGCTTAA
1 CA--GTAAGCTCTATTGAGCTGAA
*
76390937 CAGTATGCTCTATTGAGCTGAA
1 CAGTAAGCTCTATTGAGCTGAA
* * * *
76390959 CGGTAAGCTCTAATAAGCTACAA
1 CAGTAAGCTCTATTGAGCT-GAA
76390982 CAGTAAGCTCT-TATGAGCT
1 CAGTAAGCTCTAT-TGAGCT
76391001 ATAGTGAGTC
Statistics
Matches: 88, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
21 1 0.01
22 49 0.56
23 37 0.42
24 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (22 bp):
CAGTAAGCTCTATTGAGCTGAA
Found at i:76390921 original size:45 final size:44
Alignment explanation
Indices: 76390884--76391000 Score: 146
Period size: 45 Copynumber: 2.6 Consensus size: 44
76390874 AAGCTCATTC
* *
76390884 GAGCTGAACAGTAAGCTCTATTGAGCTGAAATGGTAAGCCCTAAT
1 GAGCTGAACAGTAAGCTCTATTGAGCTG-AACGGTAAGCTCTAAT
* *
76390929 GAGCTTAACAGTATGCTCTATTGAGCTGAACGGTAAGCTCTAAT
1 GAGCTGAACAGTAAGCTCTATTGAGCTGAACGGTAAGCTCTAAT
* *
76390973 AAGCTACAACAGTAAGCTCT-TATGAGCT
1 GAGCT-GAACAGTAAGCTCTAT-TGAGCT
76391001 ATAGTGAGTC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
44 19 0.30
45 44 0.70
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (44 bp):
GAGCTGAACAGTAAGCTCTATTGAGCTGAACGGTAAGCTCTAAT
Found at i:76390988 original size:67 final size:67
Alignment explanation
Indices: 76390870--76391000 Score: 158
Period size: 67 Copynumber: 2.0 Consensus size: 67
76390860 GAGTTATGGT
* * **
76390870 CAGTAAGCTCATTCGAGCTGAACAGTAAGCTCTATTGAGCTGAAATGGTAAGCCCTAATGAGCTT
1 CAGTAAGCTCATTCGAGCTGAACAGTAAGCTCTAATAAGCTGAAACAGTAAGCCCTAATGAGCTT
76390935 AA
66 AA
* * * *
76390937 CAGTATGCTCTATT-GAGCTGAACGGTAAGCTCTAATAAGCT-ACAACAGTAAGCTCTTATGAGC
1 CAGTAAGCTC-ATTCGAGCTGAACAGTAAGCTCTAATAAGCTGA-AACAGTAAGCCCTAATGAGC
76391000 T
64 T
76391001 ATAGTGAGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
66 1 0.02
67 50 0.93
68 3 0.06
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (67 bp):
CAGTAAGCTCATTCGAGCTGAACAGTAAGCTCTAATAAGCTGAAACAGTAAGCCCTAATGAGCTT
AA
Found at i:76400555 original size:25 final size:26
Alignment explanation
Indices: 76400516--76400565 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
76400506 TCTTTTTCTT
76400516 TTTATTTATTCTTATTCTTATTTTTA
1 TTTATTTATTCTTATTCTTATTTTTA
76400542 TTTATTTATT-TTATTCTTATTTTT
1 TTTATTTATTCTTATTCTTATTTTT
76400566 CTTTTGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (26 bp):
TTTATTTATTCTTATTCTTATTTTTA
Found at i:76407733 original size:22 final size:22
Alignment explanation
Indices: 76407708--76407801 Score: 98
Period size: 22 Copynumber: 4.2 Consensus size: 22
76407698 CTCATTCAAA
* * *
76407708 CTGAATAGTAAGCACTATTGAG
1 CTGAACAGTAAGCTCTAATGAG
* *
76407730 CTGAAACGGTATGCTCTAATGAG
1 CTG-AACAGTAAGCTCTAATGAG
* *
76407753 CTGAACGGTAAGCTCTATTGAG
1 CTGAACAGTAAGCTCTAATGAG
* *
76407775 CTGAACGGTAAGCTCCAATGAG
1 CTGAACAGTAAGCTCTAATGAG
76407797 CTGAA
1 CTGAA
76407802 ATAGTAAGTT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
22 45 0.73
23 17 0.27
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (22 bp):
CTGAACAGTAAGCTCTAATGAG
Found at i:76407797 original size:44 final size:45
Alignment explanation
Indices: 76407715--76407801 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 45
76407705 AAACTGAATA
* *
76407715 GTAAGCACTATTGAGCTGAAACGGTATGCTCTAATGAGCTGAACG
1 GTAAGCACTATTGAGCTGAAACGGTAAGCTCCAATGAGCTGAACG
*
76407760 GTAAGCTCTATTGAGCTG-AACGGTAAGCTCCAATGAGCTGAA
1 GTAAGCACTATTGAGCTGAAACGGTAAGCTCCAATGAGCTGAA
76407802 ATAGTAAGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 22 0.56
45 17 0.44
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.24
Consensus pattern (45 bp):
GTAAGCACTATTGAGCTGAAACGGTAAGCTCCAATGAGCTGAACG
Found at i:76407809 original size:45 final size:45
Alignment explanation
Indices: 76407708--76407809 Score: 143
Period size: 45 Copynumber: 2.3 Consensus size: 45
76407698 CTCATTCAAA
* *
76407708 CTGAATAGTAAGCACTATTGAGCTGAAACGGTATGCTCTAATGAG
1 CTGAATAGTAAGCACTATTGAGCTGAAACGGTAAGCTCCAATGAG
** *
76407753 CTGAACGGTAAGCTCTATTGAGCTG-AACGGTAAGCTCCAATGAG
1 CTGAATAGTAAGCACTATTGAGCTGAAACGGTAAGCTCCAATGAG
76407797 CTGAAATAGTAAG
1 CTG-AATAGTAAG
76407810 TTCTTACAAG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 20 0.41
45 29 0.59
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (45 bp):
CTGAATAGTAAGCACTATTGAGCTGAAACGGTAAGCTCCAATGAG
Found at i:76416807 original size:96 final size:96
Alignment explanation
Indices: 76416532--76416808 Score: 261
Period size: 96 Copynumber: 2.8 Consensus size: 96
76416522 GTGGCAAGTG
* * * * *
76416532 TTATCTCCCTGAAGTTGCAGTGGAGTAGATAGAAGATAGCAAATTTTATCTCTCTAAAGTTGTAG
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGATAAC-AATCTTATCTCCCTAAAGTTGCAG
* * *
76416597 TAAAAAGCAAATTGAAGCTACAAGATAGCAAGTC
65 T--AGAGCAAATTAAAGCTACAAGATAGCAAATC
* * **** * * *
76416631 TTATCTCCTTGAAGTTGCAGTGGAGCAGA-CTGAAGATTGTGGATCTTATTTTCCTAAAATTGCA
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATC-GAAGA-TAACAATCTTATCTCCCTAAAGTTGCA
* * * * * *
76416695 GTGGAACAAATCAAAGCTACGAGTTA-TAAATC
64 GTAGAGCAAATTAAAGCTACAAGATAGCAAATC
*
76416727 TTATCTCCCTGAAGTTGTAGTGGAGTAGATCGAAGATAACAACTCTTATCTCCCTAAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGATAACAA-TCTTATCTCCCTAAAGTTGCAG
*
76416792 TAGAGCAGATTAAAGCT
65 TAGAGCAAATTAAAGCT
76416809 TTAAACCTTA
Statistics
Matches: 138, Mismatches: 36, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
95 2 0.01
96 67 0.49
97 18 0.13
99 50 0.36
100 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (96 bp):
TTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGATAACAATCTTATCTCCCTAAAGTTGCAGT
AGAGCAAATTAAAGCTACAAGATAGCAAATC
Found at i:76416863 original size:44 final size:44
Alignment explanation
Indices: 76416722--76416876 Score: 127
Period size: 44 Copynumber: 3.5 Consensus size: 44
76416712 TACGAGTTAT
* ** * * *
76416722 AAATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATCGAAGA-TAAC
1 AAATCTTATCTCCCTGAAGTTGCAGTAAAGCAGAT-TAA-ACTTAC
* * * *
76416767 AACTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCTT-T
1 AAATCTTATCTCCCTGAAGTTGCAGTAAAGCAGATTAAA-CTTAC
* * *
76416811 AAACCTTATCTCTCTGAAGTTGCAGTAAAGCAGCTT-AACATTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTAAAGCAGATTAAAC-TTAC
*
76416855 AAATCTTATTTCCCTGAAGTTG
1 AAATCTTATCTCCCTGAAGTTG
76416877 TAGTTGAGCA
Statistics
Matches: 88, Mismatches: 18, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
42 1 0.01
43 5 0.06
44 51 0.58
45 31 0.35
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAAGTTGCAGTAAAGCAGATTAAACTTAC
Found at i:76417133 original size:44 final size:44
Alignment explanation
Indices: 76417069--76417231 Score: 143
Period size: 44 Copynumber: 3.7 Consensus size: 44
76417059 GCTACAAACC
* * * * * *
76417069 ACAAATCTTATCTTCCTAAAGTTGCAGTAAAGAAGATTGAAGAT
1 ACAAGTCTCATCTCCCTAAAGTTGCAGTGAAGCAGATCGAAGAT
* * * **
76417113 ACGAGTCTCATCTCCCTAAAGTTGCAGGGAAGCAGATGGAATCT
1 ACAAGTCTCATCTCCCTAAAGTTGCAGTGAAGCAGATCGAAGAT
* *
76417157 ACAAGTCTTATCTCTCTAAAGTTGCAGTGAAGCAGATCGAAGCA-
1 ACAAGTCTCATCTCCCTAAAGTTGCAGTGAAGCAGATCGAAG-AT
* *
76417201 ACAATTC-CTATAC-CCCTAAAGATGCAGTGAA
1 ACAAGTCTC-AT-CTCCCTAAAGTTGCAGTGAA
76417232 TTGGAATAAG
Statistics
Matches: 95, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
44 94 0.99
45 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (44 bp):
ACAAGTCTCATCTCCCTAAAGTTGCAGTGAAGCAGATCGAAGAT
Found at i:76418676 original size:21 final size:21
Alignment explanation
Indices: 76418647--76418687 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76418637 TTATAATATT
76418647 ATTACTATTATTATCATTATC
1 ATTACTATTATTATCATTATC
* *
76418668 ATTATTATTTTTATCATTAT
1 ATTACTATTATTATCATTAT
76418688 TCTTTTTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTACTATTATTATCATTATC
Found at i:76418693 original size:15 final size:15
Alignment explanation
Indices: 76418653--76418695 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
76418643 TATTATTACT
**
76418653 ATTATTATCATTATC
1 ATTATTATTTTTATC
76418668 ATTATTATTTTTATC
1 ATTATTATTTTTATC
*
76418683 ATTATTCTTTTTA
1 ATTATTATTTTTA
76418696 ACTGTTTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTATC
Found at i:76418855 original size:23 final size:23
Alignment explanation
Indices: 76418816--76418862 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
76418806 AATTTGCTCG
*
76418816 TTTTATTTTTTATTTATC-TCAT
1 TTTTATTTTTTACTTATCATCAT
*
76418838 TTTTATTTTTTCCCTTATCATCAT
1 TTTTATTTTTT-ACTTATCATCAT
76418862 T
1 T
76418863 ATTCATATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 11 0.52
23 5 0.24
24 5 0.24
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTTATTTTTTACTTATCATCAT
Found at i:76421476 original size:10 final size:10
Alignment explanation
Indices: 76421451--76421495 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
76421441 ATTTCCCACA
76421451 AAAAAAATTG
1 AAAAAAATTG
76421461 ATAAAAAATTG
1 A-AAAAAATTG
*
76421472 AAAAAAATAG
1 AAAAAAATTG
*
76421482 AAAAATA-TG
1 AAAAAAATTG
76421491 AAAAA
1 AAAAA
76421496 TAAAAAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 6 0.19
10 15 0.48
11 10 0.32
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (10 bp):
AAAAAAATTG
Found at i:76424471 original size:20 final size:19
Alignment explanation
Indices: 76424446--76424485 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
76424436 CTAAACTGAT
*
76424446 AACTTAGGAAATTTTTACAA
1 AACTTAGAAAATTTTT-CAA
76424466 AACTTAGAAAATTTTTCAA
1 AACTTAGAAAATTTTTCAA
76424485 A
1 A
76424486 CTACAAGGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.35
Consensus pattern (19 bp):
AACTTAGAAAATTTTTCAA
Found at i:76424480 original size:19 final size:20
Alignment explanation
Indices: 76424446--76424485 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
76424436 CTAAACTGAT
*
76424446 AACTTAGGAAATTTTTACAA
1 AACTTAGGAAAATTTTACAA
*
76424466 AACTTA-GAAAATTTTTCAA
1 AACTTAGGAAAATTTTACAA
76424485 A
1 A
76424486 CTACAAGGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.35
Consensus pattern (20 bp):
AACTTAGGAAAATTTTACAA
Done.