Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 233 of 343
Found at i:76754266 original size:58 final size:58
Alignment explanation
Indices: 76754100--76754278 Score: 152
Period size: 58 Copynumber: 3.1 Consensus size: 58
76754090 TATTGTTATT
* * * * * * * *
76754100 AAATTTTAATAAAATTATTGTTAAATATATTTTAATAAAAATAAAAATAAATAATTTAATC
1 AAATTTTAATATAATCATTATTAAATACAATTT-A-AAAAAT-ATAATATATAATTTAATA
* *
76754161 ATATTTTAATATAATTATTATTAAATACAATTTAATAAAATAT--TATATAATTTAATA
1 AAATTTTAATATAATCATTATTAAATACAATTTAA-AAAATATAATATATAATTTAATA
* *
76754218 AAATTCTTAATATAATCATTATTATAT-GAA-TTAAAAAATCATAATATATAATATT-ATA
1 AAATT-TTAATATAATCATTATTAAATACAATTTAAAAAAT-ATAATATATAAT-TTAATA
76754276 AAA
1 AAA
76754279 ATAATATATA
Statistics
Matches: 100, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
55 5 0.05
56 6 0.06
57 18 0.18
58 33 0.33
59 4 0.04
60 6 0.06
61 28 0.28
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (58 bp):
AAATTTTAATATAATCATTATTAAATACAATTTAAAAAATATAATATATAATTTAATA
Found at i:76754273 original size:23 final size:21
Alignment explanation
Indices: 76754247--76754289 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
76754237 TATTATATGA
76754247 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
76754270 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
76754290 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:76759919 original size:18 final size:18
Alignment explanation
Indices: 76759896--76759931 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
76759886 ATTTGGGCAT
76759896 TGTTCATCAAAGTTCTTG
1 TGTTCATCAAAGTTCTTG
76759914 TGTTCATCAAAGTTCTTG
1 TGTTCATCAAAGTTCTTG
76759932 GAAATTGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (18 bp):
TGTTCATCAAAGTTCTTG
Found at i:76769452 original size:57 final size:58
Alignment explanation
Indices: 76769382--76769490 Score: 166
Period size: 58 Copynumber: 1.9 Consensus size: 58
76769372 AAATTCACAT
* *
76769382 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCAAAACC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCAAAACC
* * *
76769439 ACCTGTATATGGCCCATTATGCCCAAATCACATTTATATGGCCCGTTAGGCC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCC
76769491 CAGTCACATT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCAAAACC
Found at i:76769491 original size:29 final size:28
Alignment explanation
Indices: 76769391--76769500 Score: 112
Period size: 29 Copynumber: 3.9 Consensus size: 28
76769381 TACCTGTATC
* * *
76769391 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTTATA
* * * *
76769419 TGGCCCATTAGGCCAAAACCACCTGTATA
1 TGGCCCATTAGGCC-CAATCACATTTATA
*
76769448 TGGCCCATTATGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTTATA
* *
76769477 TGGCCCGTTAGGCCCAGTCACATT
1 TGGCCCATTAGGCCCAATCACATT
76769501 CACATTCATG
Statistics
Matches: 65, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
28 21 0.32
29 44 0.68
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTTATA
Found at i:76775929 original size:17 final size:18
Alignment explanation
Indices: 76775907--76775940 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76775897 CATATTGAAG
76775907 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
76775924 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
76775941 CTTCTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:76777055 original size:28 final size:29
Alignment explanation
Indices: 76777015--76777125 Score: 113
Period size: 28 Copynumber: 3.9 Consensus size: 29
76777005 TTGTATCTGA
* *
76777015 CCCATTAAGCCC-AATCATATTCATATGG
1 CCCATTAGGCCCAAATCACATTCATATGG
*
76777043 CCCATTAGGCCCAAACCAC-TGT-ATATGG
1 CCCATTAGGCCCAAATCACAT-TCATATGG
* * *
76777071 CCCATTATGCCCAAATCACATTTATATGA
1 CCCATTAGGCCCAAATCACATTCATATGG
* *
76777100 CCCGTTAGGCCC-AGTCACATTCATAT
1 CCCATTAGGCCCAAATCACATTCATAT
76777126 TCATGCTCAC
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
28 48 0.70
29 21 0.30
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.27
Consensus pattern (29 bp):
CCCATTAGGCCCAAATCACATTCATATGG
Found at i:76777076 original size:56 final size:57
Alignment explanation
Indices: 76777006--76777112 Score: 144
Period size: 57 Copynumber: 1.9 Consensus size: 57
76776996 TTCACATACT
* * *
76777006 TGTATCTGACCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAACCAC
1 TGTATATGACCCATTAAGCCCAAATCACATTCATATGACCCATTAGGCCCAAACCAC
* * * *
76777062 TGTATATGGCCCATTATGCCCAAATCACATTTATATGACCCGTTAGGCCCA
1 TGTATATGACCCATTAAGCCCAAATCACATTCATATGACCCATTAGGCCCA
76777113 GTCACATTCA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
56 18 0.42
57 25 0.58
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (57 bp):
TGTATATGACCCATTAAGCCCAAATCACATTCATATGACCCATTAGGCCCAAACCAC
Found at i:76777206 original size:17 final size:18
Alignment explanation
Indices: 76777184--76777229 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
76777174 TGCCCATTAT
76777184 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
76777201 GGGCCCATTTAGCCCATTC
1 GGGCCCATATAGCCCA-TC
*
76777220 TGGCCCATAT
1 GGGCCCATAT
76777230 GGCCAAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 7 0.29
18 7 0.29
19 10 0.42
ACGTcount: A:0.20, C:0.37, G:0.22, T:0.22
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:76778634 original size:16 final size:16
Alignment explanation
Indices: 76778613--76778645 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
76778603 AAAAATTCAA
76778613 GATTTCGAGATTTTTG
1 GATTTCGAGATTTTTG
76778629 GATTTCGAGATTTTTG
1 GATTTCGAGATTTTTG
76778645 G
1 G
76778646 GGCGTTACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.27, T:0.48
Consensus pattern (16 bp):
GATTTCGAGATTTTTG
Found at i:76779173 original size:13 final size:13
Alignment explanation
Indices: 76779155--76779180 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76779145 ATATTATAAT
76779155 TATTTTATGTTAA
1 TATTTTATGTTAA
76779168 TATTTTATGTTAA
1 TATTTTATGTTAA
76779181 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:76780607 original size:40 final size:40
Alignment explanation
Indices: 76780559--76780764 Score: 315
Period size: 40 Copynumber: 5.2 Consensus size: 40
76780549 GGACTAAGAT
*
76780559 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
76780599 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
76780639 CCGAAGGCATTTGTGCTATTTACTAAATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
76780679 CCGAAGGCATCTGTGCTACTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
76780719 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
76780758 TCGAAGG
1 CCGAAGG
76780765 TACTTGGGTT
Statistics
Matches: 152, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 14 0.09
40 138 0.91
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:76786514 original size:13 final size:13
Alignment explanation
Indices: 76786496--76786521 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76786486 ATATTATAAT
76786496 TATTTTATGTTAA
1 TATTTTATGTTAA
76786509 TATTTTATGTTAA
1 TATTTTATGTTAA
76786522 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:76789312 original size:82 final size:81
Alignment explanation
Indices: 76789196--76789351 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
76789186 AAATTGTACA
* * * *
76789196 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
76789260 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
76789277 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
76789342 TGCGAGTTGA
65 TGCGAATTGA
76789352 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:76789319 original size:55 final size:52
Alignment explanation
Indices: 76789195--76789348 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
76789185 TAAATTGTAC
* *
76789195 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
76789248 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
76789303 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
76789349 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:76789353 original size:27 final size:27
Alignment explanation
Indices: 76789196--76789351 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
76789186 AAATTGTACA
*
76789196 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
76789223 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
76789250 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
76789277 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
76789305 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
76789332 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
76789352 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:76789362 original size:27 final size:27
Alignment explanation
Indices: 76789188--76789372 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
76789178 GCGGGATTAA
*
76789188 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
76789215 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
76789242 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
76789269 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
76789297 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
76789324 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
76789351 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
76789373 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:76789363 original size:82 final size:81
Alignment explanation
Indices: 76789188--76789372 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
76789178 GCGGGATTAA
* * * *
76789188 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
76789253 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
76789269 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
76789333 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
76789351 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
76789373 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:76797428 original size:82 final size:80
Alignment explanation
Indices: 76797315--76797469 Score: 204
Period size: 82 Copynumber: 1.9 Consensus size: 80
76797305 AAATTGTACA
* * * *
76797315 GCACTAAGTGTGCGATTCGACTATGTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGT
1 GCACTAAGTGTGCAAGTCAACTATGTGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTGT
76797379 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
76797395 GCACTAAGTGTGCAAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCAAGTC-AACTATGT-GCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
76797460 TGCGAGTTGA
64 TGCGAATTGA
76797470 TTGTATAGCA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 16 0.25
81 8 0.12
82 40 0.62
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (80 bp):
GCACTAAGTGTGCAAGTCAACTATGTGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:76797435 original size:55 final size:52
Alignment explanation
Indices: 76797314--76797464 Score: 162
Period size: 55 Copynumber: 2.8 Consensus size: 52
76797304 TAAATTGTAC
*
76797314 AGCACTAAGTGTGCG-ATTCGACTATGTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGGGCACTAAGTGTGCGAAATGAATATG
* * *
76797366 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGC-AAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATG-GGCACTAAGTGTGCGAAAT-GAA-TATG
* * *
76797421 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGAATTGACTATG-GGCACTAAGTGTGCGA
76797465 GTTGATTGTA
Statistics
Matches: 83, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
52 1 0.01
53 23 0.28
54 18 0.22
55 39 0.47
56 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGGGCACTAAGTGTGCGAAATGAATATG
Found at i:76797471 original size:27 final size:26
Alignment explanation
Indices: 76797315--76797469 Score: 152
Period size: 27 Copynumber: 5.8 Consensus size: 26
76797305 AAATTGTACA
76797315 GCACTAAGTGTGCG-ATTCGACTATGT
1 GCACTAAGTGTGCGAATT-GACTATGT
* *
76797341 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATG-T
* *
76797368 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATG-T
*
76797395 GCACTAAGTGTGC-AAGTCTAACTATGT
1 GCACTAAGTGTGCGAA-T-TGACTATGT
* * *
76797422 AGCACTAAGTGTGCGATTTGATTACGT
1 -GCACTAAGTGTGCGAATTGACTATGT
*
76797449 GGCACTAAGTGTGCGAGTTGA
1 -GCACTAAGTGTGCGAATTGA
76797470 TTGTATAGCA
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
26 22 0.21
27 64 0.60
28 20 0.19
29 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGAATTGACTATGT
Found at i:76797480 original size:27 final size:27
Alignment explanation
Indices: 76797314--76797490 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
76797304 TAAATTGTAC
*
76797314 AGCACTAAGTGTGCG-ATTCGACTATGT
1 AGCACTAAGTGTGCGAATT-GATTATGT
* *
76797341 -GCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGATTATGT
** *
76797366 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGATTATGT
* * *
76797394 GGCACTAAGTGTGC-AAGTCTAACTATGT
1 AGCACTAAGTGTGCGAA-T-TGATTATGT
* *
76797422 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGATTATGT
* * * *
76797449 GGCACTAAGTGTGCGAGTTGATTGTAT
1 AGCACTAAGTGTGCGAATTGATTATGT
*
76797476 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76797491 GGCTCAATAT
Statistics
Matches: 122, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
26 22 0.18
27 79 0.65
28 20 0.16
29 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGATTATGT
Found at i:76797481 original size:82 final size:80
Alignment explanation
Indices: 76797307--76797489 Score: 197
Period size: 82 Copynumber: 2.3 Consensus size: 80
76797297 GCGGGATTAA
* * * *
76797307 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTGCACTAAGTGTGCGAAATGAATATGATGCAC
1 ATTGTACAGCACTAAGTGTGCAAGTCAACTATGTGCACTAAGTGTGCGAAATGAATACGATGCAC
76797372 TAAGTGTGCGAATTG
66 TAAGTGTGCGAATTG
*** * * ** *
76797387 ACCATGCGGCACTAAGTGTGCAAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCAAGTC-AACTATGT-GCACTAAGTGTGCGAAATGAATACGAT-G
*
76797451 CACTAAGTGTGCGAGTTG
63 CACTAAGTGTGCGAATTG
* *
76797469 ATTGTATAGCACTGAGTGTGC
1 ATTGTACAGCACTAAGTGTGC
76797490 GGGCTCAATA
Statistics
Matches: 80, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
80 19 0.24
81 8 0.10
82 53 0.66
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (80 bp):
ATTGTACAGCACTAAGTGTGCAAGTCAACTATGTGCACTAAGTGTGCGAAATGAATACGATGCAC
TAAGTGTGCGAATTG
Found at i:76799324 original size:40 final size:40
Alignment explanation
Indices: 76799276--76799481 Score: 315
Period size: 40 Copynumber: 5.2 Consensus size: 40
76799266 GGACTAAGAT
* *
76799276 CCGAAGGCATTTGTGCTAATGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
76799316 CCGAAGGCATTTGTTCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
76799356 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
76799396 CCGTATGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
76799436 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
76799475 CCGAAGG
1 CCGAAGG
76799482 TACTTGGGTT
Statistics
Matches: 153, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 15 0.10
40 138 0.90
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:76806859 original size:29 final size:29
Alignment explanation
Indices: 76806819--76806895 Score: 111
Period size: 29 Copynumber: 2.7 Consensus size: 29
76806809 AATCGTATTC
*
76806819 ATATGGCCCATTAGGCCCAAACCAC-TTGT
1 ATATGGCCCATTATGCCCAAACCACATT-T
*
76806848 ATATGGCCCATTATGCCCAAATCACATTT
1 ATATGGCCCATTATGCCCAAACCACATTT
*
76806877 ATATGGCCCTTTATGCCCA
1 ATATGGCCCATTATGCCCA
76806896 GTCACATTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 42 0.95
30 2 0.05
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
ATATGGCCCATTATGCCCAAACCACATTT
Found at i:76807146 original size:16 final size:16
Alignment explanation
Indices: 76807125--76807156 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76807115 AAACTTTCAG
*
76807125 CTTTTCGGTATTTTGA
1 CTTTTCGGCATTTTGA
76807141 CTTTTCGGCATTTTGA
1 CTTTTCGGCATTTTGA
76807157 GATTTCGACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.16, G:0.19, T:0.53
Consensus pattern (16 bp):
CTTTTCGGCATTTTGA
Found at i:76808398 original size:16 final size:16
Alignment explanation
Indices: 76808377--76808409 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
76808367 GAAAATTCAA
76808377 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
76808393 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
76808409 G
1 G
76808410 GGCGTTACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.27, T:0.48
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:76810790 original size:17 final size:18
Alignment explanation
Indices: 76810768--76810801 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76810758 CACATTAAAG
76810768 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
76810785 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
76810802 CTTCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:76819270 original size:28 final size:28
Alignment explanation
Indices: 76819234--76819337 Score: 154
Period size: 28 Copynumber: 3.7 Consensus size: 28
76819224 TAGCCCCTTT
76819234 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
76819262 GGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * * * *
76819290 AGACCTAATCACTTTCATATGGTCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
76819318 AGGCCCAATCACATTCATAT
1 AGGCCCAATCACATTCATAT
76819338 TCATGCAATC
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:76832374 original size:43 final size:43
Alignment explanation
Indices: 76832326--76832486 Score: 152
Period size: 43 Copynumber: 3.8 Consensus size: 43
76832316 TCTGATTACA
*
76832326 TGTAAGACCATGTCTGGGACATTGGCATTGTATTAAGAATACG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATTAAGAATACG
* * *
76832369 TGTAAGACCATGTCTGGGACATTGGCATCGTTATTCA-ATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCG-TATTAAGAATACG
* * * *
76832412 TTTAAGA-CACTGTCTGGGACAGTGGCATCG-A-TATGTAATAACT
1 TGTAAGACCA-TGTCTGGGACATTGGCATCGTATTAAG-AAT-ACG
* * *
76832455 TGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 TGTAAGACCATGTCTGGGACATTGGCATCGTAT
76832487 GAGCTTATGT
Statistics
Matches: 95, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 11 0.12
43 75 0.79
44 7 0.07
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATTAAGAATACG
Found at i:76839568 original size:30 final size:30
Alignment explanation
Indices: 76839534--76839594 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76839524 TCCTTAACTC
76839534 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76839564 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76839594 A
1 A
76839595 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76843828 original size:30 final size:30
Alignment explanation
Indices: 76843792--76843852 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76843782 TCCTTAACTC
76843792 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76843822 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76843852 A
1 A
76843853 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76848376 original size:582 final size:582
Alignment explanation
Indices: 76847258--76848560 Score: 1689
Period size: 582 Copynumber: 2.2 Consensus size: 582
76847248 ACCAATCATA
* * * * *
76847258 TTGTTCCTAATACGAGCCTATAAGGCCCAAAACATGCATTCGGG-G-AAGCTCAAGACTAAACTA
1 TTGTCCCTAATACGAGCCTACAAGGCCCTAAACATACATT-GGGAGTAA-CTCAGGACTAAACTA
* * * * * *
76847321 ATAACTT-AGAAACTTTTAGAACACTTAGAAA-ATTTTCTCAAAAATAGGGGACACACACCCGTA
64 ATAACTTAAGAAACTTTCACAA-ACTTTGAAATTTTTTCTC-AAAA-AGGGGACACACGCCCGTG
* * * * *
76847384 TAGCCCA-GTCGTGT-TCTCACACAGCCAAAGACACACCAGTGTCACAGGCCGTGTGGATATTCG
126 T-GGCCAGGCCGTGTGTCTCACACAGCCAAAGACACACCAGTGTCACAAGACGTGTGGACATTCG
* ** * * *
76847447 AAATGGGAGCACATGGTCGCGTCCCAGCCCGTGTCTGATCCCGTATAACTATTTGACTTGGGTCA
190 AAATGGGAGCACATGGTCGCGTCCCAGCCCATGTCCAACCCCATATAACTATCTGACTTGGGTCA
* * * * *
76847512 CATGGCCAACACACACGCCTGTGTGGCTAGCCCGTGTGCCCTAAAATGGCCACACATGTCCGTAT
255 CACGGCCAACACACACACCTGTATGGCTAGCCCGTGTGCCCTAAAATGGCCACACACGTCCATAT
* * * * * * *
76847577 GCTAGGTCGTGTGCTAGGCTGTGCCAAAACTGTAGGGTATACGGACTTATGCCATACGGCCAAGT
320 GCCAGGTCGTATGCTAGGCTGTGCCAAAACTATAGGGTATACGAACTTATGACACACGACCAAGT
* * * *
76847642 TACACACCCGTGTGTGAGGCTATATGGAGCATACTGAATCGATTTTTAATTCAACACCAGGGACA
385 CACACACCCATGTGTGAGGCCATATGAAGCATACTGAATCGATTTTTAATTCAACACCAGGGACA
* * *
76847707 CATTACAACACCCTTCACTCGTATTCAAAGCCAAAATAGGGTTACAAAGCATTACCAGACTTACA
450 CACTACAACACCCCTCACCCGTATTCAAAGCCAAAATAGGGTTACAAAGCATTACCAGACTTACA
* * *
76847772 ACACATTTAAAAATAGTTTTCTCAAACATTTAATCAATACATACAATCATCATTCAATCTCAGTC
515 ACACATTTAAAAATACTTTTCTCAAACATTTAATCAATACATACAATCATCATTCAATCTAAATC
76847837 AAT
580 AAT
* * *
76847840 TTGTCCCTAATACGAGCCTACAAGG-CCTAAACATACATTGGGAGTGATTCAGGACTAAACTGAT
1 TTGTCCCTAATACGAGCCTACAAGGCCCTAAACATACATTGGGAGTAACTCAGGACTAAACTAAT
* * *
76847904 AAATTAAGAAACTTTCACAAACTTTTAAATTTTTTCTCAAAACAGGGGACACACGCCCATGTGGC
66 AACTTAAGAAACTTTCACAAACTTTGAAATTTTTTCTCAAAA-AGGGGACACACGCCCGTGTGGC
* * *
76847969 CAGGCCGTGTGTCTCACACGGCCACCAGACACTCC-GTGTCACAAGACGTGTGGACATTCGAAAT
130 CAGGCCGTGTGTCTCACACAGCCA-AAGACACACCAGTGTCACAAGACGTGTGGACATTCGAAAT
* * * *
76848033 GGGAGCACATGG-C-CGTCTCCAAGCCTATGTCCAACCCCATGTAACTCTCTGACTTTGGTCACA
194 GGGAGCACATGGTCGCGTC-CC-AGCCCATGTCCAACCCCATATAACTATCTGACTTGGGTCACA
* *
76848096 CGGCCAACACACACACCTGTATGGCTTGCCCGTGTGCCCTAAAAATGGCCACACACG-CCAATGT
257 CGGCCAACACACACACCTGTATGGCTAGCCCGTGTGCCCT-AAAATGGCCACACACGTCC-ATAT
* *
76848160 GCCAGGTCGTATGCTAGGCATG-G-CAAACCTATAGGGTATACTAACTTATGACACACGACCAAG
320 GCCAGGTCGTATGCTAGGC-TGTGCCAAAACTATAGGGTATACGAACTTATGACACACGACCAAG
* * * * *
76848223 TCACAGACCCATGTGTGAGGCCGTGTGAAGCATACTGACTTGATTTTTAATTCAACACCAGGGAC
384 TCACACACCCATGTGTGAGGCCATATGAAGCATACTGAATCGATTTTTAATTCAACACCAGGGAC
* * ** *
76848288 ACACTACAACACCCCTCACCCGTATTCAACGCCGAAATAGGGTTACGGAGCATTACCGGACTTAC
449 ACACTACAACACCCCTCACCCGTATTCAAAGCCAAAATAGGGTTACAAAGCATTACCAGACTTAC
*
76848353 AACACATTTAAACATACTTTTCTCAAACATTTAATCAATACATACAATCATCATTCAATCTAAAT
514 AACACATTTAAAAATACTTTTCTCAAACATTTAATCAATACATACAATCATCATTCAATCTAAAT
76848418 CAAT
579 CAAT
* *
76848422 TTGTCCCTAATACGAGCCTACGAGGCCCTAAACATACATTTGGAGTAACTCAGGACTAAACTAAT
1 TTGTCCCTAATACGAGCCTACAAGGCCCTAAACATACATTGGGAGTAACTCAGGACTAAACTAAT
* * *
76848487 AACTTAAGAAACTTTCACAAACTTTGAAATTTTTTCTC-AAAAGGGGACACATGCCTGTGTAGCC
66 AACTTAAGAAACTTTCACAAACTTTGAAATTTTTTCTCAAAAAGGGGACACACGCCCGTGTGGCC
*
76848551 AGGCCATGTG
131 AGGCCGTGTG
76848561 GACATTCGAA
Statistics
Matches: 623, Mismatches: 85, Indels: 27
0.85 0.12 0.04
Matches are distributed among these distances:
580 11 0.02
581 95 0.15
582 401 0.64
583 114 0.18
584 2 0.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (582 bp):
TTGTCCCTAATACGAGCCTACAAGGCCCTAAACATACATTGGGAGTAACTCAGGACTAAACTAAT
AACTTAAGAAACTTTCACAAACTTTGAAATTTTTTCTCAAAAAGGGGACACACGCCCGTGTGGCC
AGGCCGTGTGTCTCACACAGCCAAAGACACACCAGTGTCACAAGACGTGTGGACATTCGAAATGG
GAGCACATGGTCGCGTCCCAGCCCATGTCCAACCCCATATAACTATCTGACTTGGGTCACACGGC
CAACACACACACCTGTATGGCTAGCCCGTGTGCCCTAAAATGGCCACACACGTCCATATGCCAGG
TCGTATGCTAGGCTGTGCCAAAACTATAGGGTATACGAACTTATGACACACGACCAAGTCACACA
CCCATGTGTGAGGCCATATGAAGCATACTGAATCGATTTTTAATTCAACACCAGGGACACACTAC
AACACCCCTCACCCGTATTCAAAGCCAAAATAGGGTTACAAAGCATTACCAGACTTACAACACAT
TTAAAAATACTTTTCTCAAACATTTAATCAATACATACAATCATCATTCAATCTAAATCAAT
Found at i:76852908 original size:21 final size:21
Alignment explanation
Indices: 76852884--76852926 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
76852874 TTAATAAAAC
76852884 TTATATAAC-ATCATCAAACAT
1 TTATA-AACTATCATCAAACAT
* *
76852905 TTATAATCTATCATCAATCAT
1 TTATAAACTATCATCAAACAT
76852926 T
1 T
76852927 AAAAACATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.40
Consensus pattern (21 bp):
TTATAAACTATCATCAAACAT
Found at i:76853595 original size:26 final size:26
Alignment explanation
Indices: 76853566--76853621 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
76853556 TGATACAAAT
76853566 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76853592 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76853618 TGAT
1 TGAT
76853622 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:76855190 original size:21 final size:21
Alignment explanation
Indices: 76855164--76855203 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
76855154 CATGTTTGAC
76855164 TGTTGTTATTA-CTGCATGCCA
1 TGTTGTTATTATCTG-ATGCCA
76855185 TGTTGTTATTATCTGATGC
1 TGTTGTTATTATCTGATGC
76855204 ATGGGATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.17, C:0.15, G:0.20, T:0.47
Consensus pattern (21 bp):
TGTTGTTATTATCTGATGCCA
Found at i:76859499 original size:36 final size:32
Alignment explanation
Indices: 76859458--76859524 Score: 98
Period size: 36 Copynumber: 2.0 Consensus size: 32
76859448 CAAAATCATC
76859458 ATATGACCATTATCAAACTATAATATTATTTGATCA
1 ATATGACCATTATC--ACTAT-ATA-TATTTGATCA
76859494 ATATGACCATTATCACTATATATATTTGATC
1 ATATGACCATTATCACTATATATATTTGATC
76859525 TATGTTTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
32 9 0.29
33 3 0.10
34 5 0.16
36 14 0.45
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.40
Consensus pattern (32 bp):
ATATGACCATTATCACTATATATATTTGATCA
Found at i:76866182 original size:68 final size:65
Alignment explanation
Indices: 76866105--76866253 Score: 174
Period size: 64 Copynumber: 2.2 Consensus size: 65
76866095 CATCACGTGT
* * * *
76866105 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTG-TACACCAT
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAAGTGAGACACCAT
76866169 GTAG
62 GTAG
** * *
76866173 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGTG-AGACACCATGTA
76866238 G
65 G
76866239 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
76866254 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
64 27 0.39
65 3 0.04
66 27 0.39
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.21
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGTGAGACACCATGTAG
Found at i:76866210 original size:64 final size:64
Alignment explanation
Indices: 76866129--76866312 Score: 212
Period size: 66 Copynumber: 2.8 Consensus size: 64
76866119 AGACATTATG
* * * *
76866129 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
76866193 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTG--TACACCATGTAGACAAGAGAGCTACGAGATA
76866258 A
64 A
* *
76866259 ACTG--GCTTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGC-TAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
76866313 CGAACTATAT
Statistics
Matches: 101, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
63 1 0.01
64 45 0.45
65 2 0.02
66 51 0.50
67 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:76870390 original size:49 final size:47
Alignment explanation
Indices: 76870200--76870603 Score: 598
Period size: 47 Copynumber: 8.6 Consensus size: 47
76870190 TATTTGAATA
* *
76870200 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
76870247 AATGTGAAAGTATATATATGTGATAAGGCCTAATTGCCGATG-GATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
76870293 AATGTG-AAGTGTATATATGCGATAA-GCCGAATGGCCAATGTGACG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76870338 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
76870387 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76870436 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76870483 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
76870530 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
76870577 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
76870604 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 26, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
44 12 0.04
45 26 0.08
46 15 0.05
47 182 0.56
48 13 0.04
49 78 0.24
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:76875324 original size:68 final size:67
Alignment explanation
Indices: 76875249--76875398 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
76875239 CATCATGTGT
* * * *
76875249 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
76875311 ATGTAG
62 ATGTAG
** * *
76875317 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
76875382 AG
66 AG
76875384 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
76875399 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:76875354 original size:64 final size:64
Alignment explanation
Indices: 76875273--76875456 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
76875263 AGACATTATG
* *
76875273 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
76875337 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
76875402 AA
63 AA
* * * *
76875404 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
76875457 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:76881245 original size:16 final size:16
Alignment explanation
Indices: 76881224--76881254 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76881214 ATATATTTTC
*
76881224 ATTTGCATCATATATA
1 ATTTGCATCACATATA
76881240 ATTTGCATCACATAT
1 ATTTGCATCACATAT
76881255 CAAATAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGCATCACATATA
Found at i:76893593 original size:56 final size:56
Alignment explanation
Indices: 76893507--76893682 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
76893497 ACAAGGGATG
*
76893507 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
76893563 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
76893619 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
76893675 ATGGGCAA
1 ATGGGCAA
76893683 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:76895041 original size:40 final size:40
Alignment explanation
Indices: 76894810--76895034 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
76894800 TCGAATGATG
* * * * *
76894810 TCCGGGCTAAGTCCCGAAGAC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
76894850 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76894890 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
76894929 TCTAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76894969 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76895010 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76895035 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 31 0.20
40 118 0.75
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76901683 original size:56 final size:56
Alignment explanation
Indices: 76901623--76901729 Score: 196
Period size: 56 Copynumber: 1.9 Consensus size: 56
76901613 GCGTCACAGT
76901623 CGCTAAAAAAATCCATATCTCTAGTTACGAAACTTGAAATCCAATAATGTATGTGA
1 CGCTAAAAAAATCCATATCTCTAGTTACGAAACTTGAAATCCAATAATGTATGTGA
**
76901679 CGCTAAAAAAATCCATATCTCTAGTTACGAAACTTTTAATCCAATAATGTA
1 CGCTAAAAAAATCCATATCTCTAGTTACGAAACTTGAAATCCAATAATGTA
76901730 AATTTTCCTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (56 bp):
CGCTAAAAAAATCCATATCTCTAGTTACGAAACTTGAAATCCAATAATGTATGTGA
Found at i:76902981 original size:46 final size:46
Alignment explanation
Indices: 76902859--76902992 Score: 164
Period size: 46 Copynumber: 2.9 Consensus size: 46
76902849 TGTAACCCGC
*
76902859 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGAT
* * * * *
76902905 ACATTTCA-CGAACTCAGACTCAACTCAACGAGTTCGGATG-TTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-AT
*
76902952 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC
76902993 CAAATATCCG
Statistics
Matches: 72, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
45 2 0.03
46 34 0.47
47 34 0.47
48 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGAT
Found at i:76908585 original size:46 final size:46
Alignment explanation
Indices: 76908364--76908585 Score: 218
Period size: 46 Copynumber: 4.8 Consensus size: 46
76908354 TGTAACCTGC
* * * * *
76908364 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAGGCATTCTCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
* * * *
76908410 CCATAAGTGAACTCGGACTCAACTCAATGAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TT-CA-GAC-A-TTCGCAT
* * * * *
76908460 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
* *
76908503 CCATAAGTGAATTCAGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
*
76908549 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCAGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGA
76908586 TGCCCAAATA
Statistics
Matches: 141, Mismatches: 26, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
42 2 0.01
43 3 0.02
44 2 0.01
45 2 0.01
46 98 0.70
47 23 0.16
48 3 0.02
49 2 0.01
50 4 0.03
51 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
Found at i:76911927 original size:26 final size:25
Alignment explanation
Indices: 76911897--76911954 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 25
76911887 TGTTCAAAAC
*
76911897 AGTCATATA-TCATATAGGGGTATATT
1 AGTCATATACTCATA-A-GGGTATAAT
*
76911923 AGTCATTTACTTCATAAGGGTATAAT
1 AGTCATATAC-TCATAAGGGTATAAT
76911949 AGTCAT
1 AGTCAT
76911955 TTAACAGGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 22 0.79
27 1 0.04
28 5 0.18
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.38
Consensus pattern (25 bp):
AGTCATATACTCATAAGGGTATAAT
Found at i:76915556 original size:36 final size:36
Alignment explanation
Indices: 76915516--76915588 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
76915506 TCTCTTGTCT
*
76915516 AAAGGTAATAATATTTTTTGGTGTTATACTGGACTG
1 AAAGGTAATAATATTTGTTGGTGTTATACTGGACTG
76915552 AAAGGTAATAATATTTGTTGGTGTTATACTGGACTG
1 AAAGGTAATAATATTTGTTGGTGTTATACTGGACTG
76915588 A
1 A
76915589 GGCATTTCGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.40
Consensus pattern (36 bp):
AAAGGTAATAATATTTGTTGGTGTTATACTGGACTG
Found at i:76916765 original size:33 final size:33
Alignment explanation
Indices: 76916695--76916766 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
76916685 GCATACTGTG
* **
76916695 CTGATATGGGTTAAGGCCCAGACTACTTTTATCA
1 CTGA-ATGGGCTAAGGCCCAGACTACTACTATCA
* * *
76916729 CTGAATGGGCTAAGGCCCAGACTGCTACTGTTA
1 CTGAATGGGCTAAGGCCCAGACTACTACTATCA
76916762 CTGAA
1 CTGAA
76916767 AAGGTTTTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (33 bp):
CTGAATGGGCTAAGGCCCAGACTACTACTATCA
Found at i:76921132 original size:15 final size:16
Alignment explanation
Indices: 76921112--76921141 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76921102 CTGTAAAGAT
76921112 TATACATT-TCATATA
1 TATACATTCTCATATA
76921127 TATACATTCTCATAT
1 TATACATTCTCATAT
76921142 CTGGTACTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.47
Consensus pattern (16 bp):
TATACATTCTCATATA
Found at i:76921299 original size:42 final size:43
Alignment explanation
Indices: 76921207--76921319 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 43
76921197 CAATGCCTAC
* * **
76921207 GTCCCAGACATGGTCTTACATGTAAGTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATCAATATCGATGCCAAT
*
76921250 GTCCCAGACAGGGTCTTACACG-AAATCACATA-CGATGCCAAT
1 GTCCCAGACATGGTCTTACACGTAAATCA-ATATCGATGCCAAT
* *
76921292 GTCCCAGACATAGTCTTACACTTAAATC
1 GTCCCAGACATGGTCTTACACGTAAATC
76921320 TCAAATCGAG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 32 0.53
43 28 0.47
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATCAATATCGATGCCAAT
Found at i:76928430 original size:15 final size:16
Alignment explanation
Indices: 76928412--76928441 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76928402 CTGTAAAGAT
76928412 TATACATT-TCATATA
1 TATACATTCTCATATA
76928427 TATACATTCTCATAT
1 TATACATTCTCATAT
76928442 CTCGTACTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.47
Consensus pattern (16 bp):
TATACATTCTCATATA
Found at i:76928607 original size:42 final size:43
Alignment explanation
Indices: 76928499--76928657 Score: 153
Period size: 42 Copynumber: 3.7 Consensus size: 43
76928489 ATGGAGTACA
* * * *
76928499 ATGCCTACGTCCCAGACGTGGTCTTACATGTAATTC-AATATCG
1 ATGCCTATGTCCCAGACATGGTCTTACACGTAAATCAAATA-CG
* * * *
76928542 ATGGCTCTGTCCCAAACAGGGTCTTACACG-AAATCAAATACG
1 ATGCCTATGTCCCAGACATGGTCTTACACGTAAATCAAATACG
*
76928584 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCTATGTCCCAGACATGGTCTTACACGTAAA--TCAAATACG
* * **
76928628 AGGCCTGTGTTACAGACATGGTCTTACACG
1 ATGCCTATGTCCCAGACATGGTCTTACACG
76928658 ATATTTTAGC
Statistics
Matches: 94, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 31 0.33
43 30 0.32
44 27 0.29
45 6 0.06
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCTATGTCCCAGACATGGTCTTACACGTAAATCAAATACG
Found at i:76930880 original size:22 final size:24
Alignment explanation
Indices: 76930838--76930889 Score: 81
Period size: 22 Copynumber: 2.2 Consensus size: 24
76930828 AAAAGCTTTC
*
76930838 GTAACAAACTCGGTTTTAAAGTTA
1 GTAATAAACTCGGTTTTAAAGTTA
76930862 GTAATAAACT-GG-TTTAAAGTTA
1 GTAATAAACTCGGTTTTAAAGTTA
76930884 GTAATA
1 GTAATA
76930890 TTTTACCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 16 0.59
23 2 0.07
24 9 0.33
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (24 bp):
GTAATAAACTCGGTTTTAAAGTTA
Found at i:76940822 original size:43 final size:43
Alignment explanation
Indices: 76940761--76940847 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
76940751 ATAGTAATGA
76940761 TTGACTGAACGTATATGTGTGAGATAGTGAGGATAATTGTATT
1 TTGACTGAACGTATATGTGTGAGATAGTGAGGATAATTGTATT
76940804 TTGACTGAACGTATATGTGTGAGATAGTGAGGATAATTGTATT
1 TTGACTGAACGTATATGTGTGAGATAGTGAGGATAATTGTATT
76940847 T
1 T
76940848 CTTGCTTTGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.30, C:0.05, G:0.28, T:0.38
Consensus pattern (43 bp):
TTGACTGAACGTATATGTGTGAGATAGTGAGGATAATTGTATT
Found at i:76941888 original size:47 final size:47
Alignment explanation
Indices: 76941822--76942491 Score: 1079
Period size: 47 Copynumber: 14.1 Consensus size: 47
76941812 GAAATGATAG
*
76941822 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76941869 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
76941918 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
76941965 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
76942012 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76942059 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
76942108 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
76942155 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
76942202 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76942249 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
76942298 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAAGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT--GTGA
*
76942347 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
76942394 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
76942441 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76942488 TAAG
1 TAAG
76942492 TCCCGAAGGG
Statistics
Matches: 588, Mismatches: 27, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
47 403 0.69
49 185 0.31
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:76942101 original size:143 final size:141
Alignment explanation
Indices: 76941822--76942491 Score: 1061
Period size: 143 Copynumber: 4.7 Consensus size: 141
76941812 GAAATGATAG
*
76941822 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
76941887 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
76941952 TGTATATACGTGA
129 TGTATATATGTGA
* *
76941965 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
76942030 GTGATGAACGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
76942095 TATATATATGTGA
131 --TATATATGTGA
*
76942108 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
76942173 GTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
76942238 TATATATGAGA
131 TATATATGTGA
*
76942249 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
76942314 ATGTGATGAATGTGAAAGTGTATATATAAGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAA
64 ATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76942379 AGTGTATATATGTGA
127 AGTGTATATATGTGA
* * * * * * *
76942394 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
76942459 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GTGATGAATGTGAAAGTATATATATGTGATAAG
76942492 TCCCGAAGGG
Statistics
Matches: 495, Mismatches: 26, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
141 109 0.22
143 294 0.59
145 92 0.19
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (141 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGA
Found at i:76942145 original size:190 final size:190
Alignment explanation
Indices: 76941822--76942491 Score: 1146
Period size: 190 Copynumber: 3.5 Consensus size: 190
76941812 GAAATGATAG
*
76941822 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGAT
*
76941887 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
76941952 TGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATACGTGA
131 TGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
76942012 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGAT
76942077 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
76942142 TGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
131 TGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
* * *
76942202 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGAT
*
76942267 GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * *
76942332 TGTATATATAAGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TG--TATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
* * * * * * *
76942394 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGAT
*
76942459 GTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAG
76942492 TCCCGAAGGG
Statistics
Matches: 458, Mismatches: 20, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
190 324 0.71
191 1 0.00
192 133 0.29
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (190 bp):
TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
Found at i:76942666 original size:37 final size:37
Alignment explanation
Indices: 76942610--76942688 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
76942600 CCGAGCTCTA
* * * **
76942610 AAGACCCGATGACTACGTGTGGGGATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
*
76942647 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
76942684 AAGAC
1 AAGAC
76942689 TTCATAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:76944479 original size:43 final size:43
Alignment explanation
Indices: 76944431--76944533 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
76944421 TTGGTTTTCA
76944431 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
76944474 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
76944517 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
76944534 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:76944550 original size:29 final size:29
Alignment explanation
Indices: 76944515--76944588 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
76944505 GTTGTGAGAT
* *
76944515 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
76944544 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
76944573 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76944589 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:76944982 original size:40 final size:39
Alignment explanation
Indices: 76944937--76945041 Score: 120
Period size: 39 Copynumber: 2.6 Consensus size: 39
76944927 AAGTGACCAT
* *
76944937 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGGCTAAG-TCCGAAGGCATTGGTGCGAGATACTAA
* * * * *
76944977 TTCCGGGGTAAGCCCGAAGGCATTGGTGTGAGTTACTAA
1 ATCCGGGCTAAGTCCGAAGGCATTGGTGCGAGATACTAA
76945016 ATCCGGGCTAAGTCCCGAAGAGCATT
1 ATCCGGGCTAAGT-CCGAAG-GCATT
76945042 CATGCTAGTG
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
39 33 0.62
40 15 0.28
41 5 0.09
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGGCATTGGTGCGAGATACTAA
Found at i:76944998 original size:39 final size:40
Alignment explanation
Indices: 76944898--76945041 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
76944888 TCGAATGATG
* * * * *
76944898 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGA-T-ACTAAA
* * *
76944938 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTGGTGCGAGATACTAAA
* * *
76944978 TCCGGGGTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGATACTAAA
76945017 TCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAG-GCATT
76945042 CATGCTAGTG
Statistics
Matches: 85, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
39 33 0.39
40 36 0.42
41 15 0.18
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGATACTAAA
Found at i:76945063 original size:40 final size:40
Alignment explanation
Indices: 76945019--76945145 Score: 191
Period size: 40 Copynumber: 3.1 Consensus size: 40
76945009 TTACTAAATC
76945019 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATT
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATT
* *
76945059 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATT
* * *
76945099 CGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGACGTGTATT
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA--TGTATT
76945141 CGGGC
1 CGGGC
76945146 CTTCGTGCCT
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 69 0.88
42 9 0.12
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATT
Found at i:76945088 original size:23 final size:23
Alignment explanation
Indices: 76945022--76945088 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
76945012 CTAAATCCGG
76945022 GCTAAGTCCCGAAGAGCATTCAT
1 GCTAAGTCCCGAAGAGCATTCAT
* * **
76945045 GCT-AGT---G-A-TGTATTCGG
1 GCTAAGTCCCGAAGAGCATTCAT
76945062 GCTAAGTCCCGAAGAGCATTCAT
1 GCTAAGTCCCGAAGAGCATTCAT
76945085 GCTA
1 GCTA
76945089 GTGATATATC
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 4 0.13
19 1 0.03
21 1 0.03
22 4 0.13
23 12 0.40
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCAT
Found at i:76948618 original size:49 final size:47
Alignment explanation
Indices: 76948510--76949214 Score: 1137
Period size: 47 Copynumber: 15.1 Consensus size: 47
76948500 GAAATGATAG
*
76948510 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76948557 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
76948606 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
76948655 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76948702 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATGTG-
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76948746 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
76948795 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76948840 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
76948887 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76948934 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76948981 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
76949029 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76949075 TAAGGCCTAAT-GCCGATGTGATGAATGTG-AAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
76949118 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATA-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
76949164 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76949211 TAAG
1 TAAG
76949215 TCCCGAAGGG
Statistics
Matches: 622, Mismatches: 18, Indels: 36
0.92 0.03 0.05
Matches are distributed among these distances:
42 2 0.00
43 17 0.03
44 56 0.09
45 76 0.12
46 90 0.14
47 193 0.31
48 22 0.04
49 166 0.27
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:76949013 original size:234 final size:233
Alignment explanation
Indices: 76948512--76949212 Score: 1141
Period size: 234 Copynumber: 3.0 Consensus size: 233
76948502 AATGATAGTA
*
76948512 AGGCCTAATGGCCGATGTGATGAACGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATG
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATG
76948576 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
66 TGATGAATGTGAAAGTG----TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
76948641 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAG
127 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAG
76948706 GCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATGTG-T
190 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
76948747 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
1 -AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGA
*
76948812 TGTGATGAATGTGAAAGTGTATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
64 TGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
76948877 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCT
129 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCT
76948942 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
194 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
76948982 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGAT
76949047 GTGATGAATGTGAAAGTGTATAATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTG-AAGTG-
65 GTGATGAATGTGAAAGTGTAT-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * *
76949109 -TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATA-ATGTGACAGGGCCG
129 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCT
* * * * *
76949172 AGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGAT
194 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
76949212 A
1 A
76949213 AGTCCCGAAG
Statistics
Matches: 445, Mismatches: 14, Indels: 18
0.93 0.03 0.04
Matches are distributed among these distances:
230 46 0.10
231 48 0.11
232 91 0.20
233 5 0.01
234 158 0.36
235 17 0.04
236 33 0.07
238 47 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (233 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATG
TGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAA
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
Found at i:76949389 original size:37 final size:37
Alignment explanation
Indices: 76949333--76949411 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
76949323 CCGAGCTCTA
* * *
76949333 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
76949370 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
76949407 AAGAC
1 AAGAC
76949412 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:76951615 original size:5 final size:5
Alignment explanation
Indices: 76951605--76951629 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
76951595 AATAATAAAA
76951605 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
76951630 GTAAGGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:76958186 original size:18 final size:18
Alignment explanation
Indices: 76958163--76958206 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
76958153 GATAGGCCGA
76958163 AATGGGCCATGTGGGCCC
1 AATGGGCCATGTGGGCCC
76958181 AATGGGCCATGTGGGCCC
1 AATGGGCCATGTGGGCCC
76958199 AATGGGCC
1 AATGGGCC
76958207 TACGGGACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.18, C:0.27, G:0.39, T:0.16
Consensus pattern (18 bp):
AATGGGCCATGTGGGCCC
Found at i:76958428 original size:27 final size:26
Alignment explanation
Indices: 76958390--76958513 Score: 122
Period size: 27 Copynumber: 4.6 Consensus size: 26
76958380 TTAGCTTACC
*
76958390 AAATTACTAAAATAGCCTCGATTAGCA
1 AAATTACCAAAATA-CCTCGATTAGCA
76958417 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATA-CCTCGATTAGCA
* * * *
76958444 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCTC-GATTAGCA
* * * *
76958471 AAATTACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCTC-GATTAGCA
*
76958498 AAATTACCGAAATACC
1 AAATTACCAAAATACC
76958514 CCTGTAAGGT
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 3 0.03
27 84 0.97
ACGTcount: A:0.44, C:0.23, G:0.08, T:0.26
Consensus pattern (26 bp):
AAATTACCAAAATACCTCGATTAGCA
Found at i:76958514 original size:27 final size:27
Alignment explanation
Indices: 76958416--76958516 Score: 132
Period size: 27 Copynumber: 3.7 Consensus size: 27
76958406 CTCGATTAGC
* * *
76958416 AAAATTACCAAAATA-CCCTCGATTAGC
1 AAAATTACCAAAATACCCCT-AATTTGT
**
76958443 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
76958470 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
*
76958497 AAAATTACCGAAATACCCCT
1 AAAATTACCAAAATACCCCT
76958517 GTAAGGTAGA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 63 0.94
28 4 0.06
ACGTcount: A:0.43, C:0.25, G:0.07, T:0.26
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAATTTGT
Found at i:76958529 original size:27 final size:27
Alignment explanation
Indices: 76958499--76958884 Score: 432
Period size: 27 Copynumber: 14.3 Consensus size: 27
76958489 TAATTTGTAA
*
76958499 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76958526 AATTACCGAAATACCCTTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
76958553 AATTACTGAAATACTCCTGTAAGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76958580 AATTACCGAAATACCCTTGTAGCGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
76958607 AATTAGTGAAATACTCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76958634 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
76958661 AATGACTGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76958688 AATTACCAAAATACCCCTGTAGGGCAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
76958715 AATTATTGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76958742 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
76958769 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76958796 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76958823 AAATACTGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
76958850 AATTATCGAGATA-CCCTGTTGGGGTAA
1 AATTACCGAAATACCCCTG-TAGGGTAG
76958877 AATTACCG
1 AATTACCG
76958885 TTTTACCCTT
Statistics
Matches: 302, Mismatches: 56, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
26 5 0.02
27 297 0.98
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:76958530 original size:54 final size:54
Alignment explanation
Indices: 76958499--76958882 Score: 500
Period size: 54 Copynumber: 7.1 Consensus size: 54
76958489 TAATTTGTAA
* * *
76958499 AATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
76958553 AATTACTGAAATACTCCTGTAAGATAGAATTACCGAAATACCCTTGTAGCGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
76958607 AATTAGTGAAATACTCCTGTAAGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
76958661 AATGACTGAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGCAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
76958715 AATTATTGAAATACCCCTATAAGGTAGAATTATCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
76958769 AATTATTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * * * *
76958823 AAATACTGAAATACCCCTGTAGGGTAAAATTATCGAGATA-CCCTGTTGGGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTG-TAGGGTAG
76958877 AATTAC
1 AATTAC
76958883 CGTTTTACCC
Statistics
Matches: 296, Mismatches: 33, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 4 0.01
54 292 0.99
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:76959477 original size:27 final size:26
Alignment explanation
Indices: 76959447--76959583 Score: 130
Period size: 27 Copynumber: 5.1 Consensus size: 26
76959437 ATTCTATTAA
* *
76959447 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTCTGCCACAATATCT-ATTCTG
*
76959474 GTGGCTCTGTCACAATATTCTATTTCTG
1 GTGGCTCTGCCACAATA-TCTA-TTCTG
* * *
76959502 GTGGCTATGCTACAAATATCTATTTTG
1 GTGGCTCTGCCAC-AATATCTATTCTG
*
76959529 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTAT-TCTG
* * * *
76959556 GTGACTCTGTCACAATATTTGTTCTG
1 GTGGCTCTGCCACAATATCTATTCTG
76959582 GT
1 GT
76959584 AGCCATGCTG
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
26 14 0.15
27 52 0.57
28 22 0.24
29 4 0.04
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.40
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTATTCTG
Found at i:76959778 original size:6 final size:6
Alignment explanation
Indices: 76959769--76959843 Score: 55
Period size: 6 Copynumber: 12.3 Consensus size: 6
76959759 CTGTCACCTA
* * * *
76959769 ATTCTG ATTCTA ATTTTG ATTATG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
76959818 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
76959844 AATGTTTCTT
Statistics
Matches: 53, Mismatches: 11, Indels: 10
0.72 0.15 0.14
Matches are distributed among these distances:
5 2 0.04
6 46 0.87
7 4 0.08
8 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:76959779 original size:25 final size:25
Alignment explanation
Indices: 76959700--76959761 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
76959690 TTGCATTCAC
* * *
76959700 ATTCTGATTTTGATCCTGTTACCTG
1 ATTCTGATTCTGATCCTGTCACCTA
* *
76959725 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATCCTGTCACCTA
76959750 ATTCTGATTCTG
1 ATTCTGATTCTG
76959762 TCACCTAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (25 bp):
ATTCTGATTCTGATCCTGTCACCTA
Found at i:76959801 original size:37 final size:37
Alignment explanation
Indices: 76959754--76959834 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
76959744 CACCTAATTC
* *
76959754 TGATTCTGTCACCTAATTCTGATTCTAATTTTGATTA
1 TGATTCTGTCACCTAATTCTGATTCTAATTCTCATTA
* * *
76959791 TGATTCTGTCACCTGATTCTGATTCTGATTCTCATTT
1 TGATTCTGTCACCTAATTCTGATTCTAATTCTCATTA
76959828 TGATTCT
1 TGATTCT
76959835 AGTTCTGATA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.49
Consensus pattern (37 bp):
TGATTCTGTCACCTAATTCTGATTCTAATTCTCATTA
Found at i:76959813 original size:19 final size:19
Alignment explanation
Indices: 76959728--76959817 Score: 103
Period size: 19 Copynumber: 4.8 Consensus size: 19
76959718 TTACCTGATA
76959728 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
*
76959747 CTAATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
* * *
76959766 CTAATTCTGATTC--TAATT
1 CTGATTCTGATTCTGTCA-C
* *
76959784 TTGATTATGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
76959803 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
76959818 ATTCTCATTT
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
17 2 0.03
18 10 0.17
19 44 0.76
20 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (19 bp):
CTGATTCTGATTCTGTCAC
Found at i:76961436 original size:89 final size:89
Alignment explanation
Indices: 76961283--76961458 Score: 343
Period size: 89 Copynumber: 2.0 Consensus size: 89
76961273 AAGGAGGTCC
*
76961283 AGGGTTCGAAACTCATGGTAATCAAAGAGCATTTATTTTGCTAACAGGGGGCAGCAAGAGTTGGT
1 AGGGTTCGAAACTCATGGTAATCAAAGAGCATTTATTTTGCTAACAGGGGGCAGCAAGAATTGGT
76961348 GTTGAATTTAAACTCTGATGATCT
66 GTTGAATTTAAACTCTGATGATCT
76961372 AGGGTTCGAAACTCATGGTAATCAAAGAGCATTTATTTTGCTAACAGGGGGCAGCAAGAATTGGT
1 AGGGTTCGAAACTCATGGTAATCAAAGAGCATTTATTTTGCTAACAGGGGGCAGCAAGAATTGGT
76961437 GTTGAATTTAAACTCTGATGAT
66 GTTGAATTTAAACTCTGATGAT
76961459 GGAGGGATCC
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 86 1.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (89 bp):
AGGGTTCGAAACTCATGGTAATCAAAGAGCATTTATTTTGCTAACAGGGGGCAGCAAGAATTGGT
GTTGAATTTAAACTCTGATGATCT
Found at i:76962008 original size:27 final size:27
Alignment explanation
Indices: 76961910--76962064 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
76961900 TTAGTTTACC
* * * *
76961910 AAATTACTAAAATA-GCCTCGATTAGAA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * *
76961937 AAATTACCAAAATA-CCCTCAATTAGAA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
76961964 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
76961991 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * *
76962018 AAACTATCGAAATACCCCTG-TATGGTA
1 AAATTACCAAAATACCCCTGAT-TTGTA
*
76962045 GAATTACCAAAATACCCCTG
1 AAATTACCAAAATACCCCTG
76962065 TAGGGTGAAA
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 105 0.95
28 4 0.04
ACGTcount: A:0.43, C:0.22, G:0.10, T:0.26
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:76962050 original size:81 final size:81
Alignment explanation
Indices: 76961965--76962404 Score: 377
Period size: 81 Copynumber: 5.4 Consensus size: 81
76961955 CAATTAGAAA
* ** * *
76961965 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTG-ATTTGTAAAACTATCGA
1 AATTACCAAAATACCCCT-GTATGGTAAAATTACCAAAATACCCCTGTA-AGGTAGAATTATCGA
* *
76962028 AATACCCCTGTATGGTAG
64 AATACCCCTATAGGGTAG
* * ** * *
76962046 AATTACCAAAATACCCCTGTAGGGTGAAATTACTGAAATACTCCTGTAAGGTAGAATTACCGAAA
1 AATTACCAAAATACCCCTGTATGGTAAAATTACCAAAATACCCCTGTAAGGTAGAATTATCGAAA
* *
76962111 TACCCTTGTAGGGTAG
66 TACCCCTATAGGGTAG
** * * ** * *
76962127 AATTACTGAAATACTCCTATAAAGTAGAATTACCAAAATACCCCTGTAAGGTAGAATGA-CTGAA
1 AATTACCAAAATACCCCTGTATGGTAAAATTACCAAAATACCCCTGTAAGGTAGAATTATC-GAA
*
76962191 ATACCCCTATAAGGTAG
65 ATACCCCTATAGGGTAG
* * * * ** * *
76962208 AATTACCGAAATACCCCTTTAGGGTAGAATTACTGAAATACCCTTATAAGGTAGAATTATCGAAA
1 AATTACCAAAATACCCCTGTATGGTAAAATTACCAAAATACCCCTGTAAGGTAGAATTATCGAAA
76962273 TACCCCTATAGGGTAG
66 TACCCCTATAGGGTAG
* * * * * * * * *
76962289 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAATA-CTAAA
1 AATTACCAAAATACCCCTGTATGGTAAAATTACCAAAATACCCCTGTAAGGTAGAATTATC-GAA
**
76962353 ATACCCCTATAGAATAG
65 ATACCCCTATAGGGTAG
* * **
76962370 AATTACCGAGATA-CCCTCGTGGGGTAAAATTACCA
1 AATTACCAAAATACCCCT-GTATGGTAAAATTACCA
76962405 TTTTGCCCTT
Statistics
Matches: 297, Mismatches: 56, Indels: 12
0.81 0.15 0.03
Matches are distributed among these distances:
80 8 0.03
81 287 0.97
82 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTATGGTAAAATTACCAAAATACCCCTGTAAGGTAGAATTATCGAAA
TACCCCTATAGGGTAG
Found at i:76962065 original size:27 final size:27
Alignment explanation
Indices: 76962025--76962403 Score: 393
Period size: 27 Copynumber: 14.0 Consensus size: 27
76962015 GTAAAACTAT
*
76962025 CGAAATACCCCTGTATGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
76962052 CAAAATACCCCTGTAGGGT-GAAATTAC
1 CGAAATACCCCTGTAGGGTAG-AATTAC
* * *
76962079 TGAAATACTCCTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
76962106 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * **
76962133 TGAAATACTCCTATAAAGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
76962160 CAAAATACCCCTGTAAGGTAGAATGAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
76962187 TGAAATACCCCTATAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
76962214 CGAAATACCCCTTTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * * *
76962241 TGAAATACCCTTATAAGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
76962268 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
76962295 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
76962322 CGAAATACCCTTGTAGGGTAAAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** * **
76962349 TAAAATACCCCTATAGAATAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
76962376 CGAGATA-CCCTCGTGGGGTAAAATTAC
1 CGAAATACCCCT-GTAGGGTAGAATTAC
76962403 C
1 C
76962404 ATTTTGCCCT
Statistics
Matches: 287, Mismatches: 62, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
26 5 0.02
27 281 0.98
28 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:76962084 original size:54 final size:54
Alignment explanation
Indices: 76962026--76962402 Score: 463
Period size: 54 Copynumber: 7.0 Consensus size: 54
76962016 TAAAACTATC
* *
76962026 GAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTGTAGGGT-GAAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG-AATTACT
* *
76962080 GAAATACTCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* * * * * *
76962134 GAAATACTCCTATAAAGTAGAATTACCAAAATACCCCTGTAAGGTAGAATGACT
1 GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* *
76962188 GAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTTTAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* * * *
76962242 GAAATACCCTTATAAGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* * * * *
76962296 AAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAATACT
1 GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* * * * * *
76962350 AAAATACCCCTAT-AGAATAGAATTACCGAGATA-CCCTCGTGGGGTAAAATTAC
1 GAAATACCCCTGTAAG-GTAGAATTACCGAAATACCCCT-GTAGGGTAGAATTAC
76962403 CATTTTGCCC
Statistics
Matches: 285, Mismatches: 35, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.01
54 280 0.98
55 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (54 bp):
GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
Found at i:76962997 original size:27 final size:27
Alignment explanation
Indices: 76962967--76963078 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
76962957 ATTCTATTAA
* *
76962967 GTGGCTTTGCTACATTATCTGATTCTG
1 GTGGCTTTGCCACAATATCTGATTCTG
* * *
76962994 GTGGCTCTGTCACAATATTCTGTTTCTG
1 GTGGCTTTGCCACAATA-TCTGATTCTG
* *
76963022 GTGGCTATGCCACAAATATAT-ATTCTG
1 GTGGCTTTGCCAC-AATATCTGATTCTG
76963049 GTGGCTTTGCCACAATATCTG-TATCTG
1 GTGGCTTTGCCACAATATCTGAT-TCTG
76963076 GTG
1 GTG
76963079 ACTCTATCAC
Statistics
Matches: 70, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
26 7 0.10
27 37 0.53
28 22 0.31
29 4 0.06
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTGATTCTG
Found at i:76963020 original size:28 final size:28
Alignment explanation
Indices: 76962967--76963103 Score: 108
Period size: 27 Copynumber: 5.1 Consensus size: 28
76962957 ATTCTATTAA
* * *
76962967 GTGGCTTTGCTACATTA-TCTGATTCTG
1 GTGGCTCTGCCACAATATTCTGATTCTG
* *
76962994 GTGGCTCTGTCACAATATTCTGTTTCTG
1 GTGGCTCTGCCACAATATTCTGATTCTG
* *
76963022 GTGGCTATGCCACAA-ATATAT-ATTCTG
1 GTGGCTCTGCCACAATAT-TCTGATTCTG
*
76963049 GTGGCTTTGCCACAATA-TCTG-TATCTG
1 GTGGCTCTGCCACAATATTCTGAT-TCTG
* **
76963076 GTGACTCTATCACAATATT-TG-TTCTG
1 GTGGCTCTGCCACAATATTCTGATTCTG
76963102 GT
1 GT
76963104 AGCCATGCTG
Statistics
Matches: 89, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
26 9 0.10
27 54 0.61
28 26 0.29
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (28 bp):
GTGGCTCTGCCACAATATTCTGATTCTG
Found at i:76963251 original size:25 final size:25
Alignment explanation
Indices: 76963223--76963284 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
76963213 CATTCACATT
* * *
76963223 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
76963248 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
76963273 CTGATTCTGATT
1 CTGATTCTGATT
76963285 TTGATTATGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:76963259 original size:6 final size:6
Alignment explanation
Indices: 76963220--76963335 Score: 76
Period size: 6 Copynumber: 18.8 Consensus size: 6
76963210 TTGCATTCAC
* * * *
76963220 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
76963270 ATTCTG ATTCTG ATTTTG ATTATG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
76963319 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
76963336 AGTTATGATA
Statistics
Matches: 84, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
5 4 0.05
6 69 0.82
7 8 0.10
8 3 0.04
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:76963273 original size:19 final size:19
Alignment explanation
Indices: 76963248--76963318 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
76963238 TTACCTGATA
76963248 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
* *
76963267 CTAATTCTGATTCTG--ATT
1 CTGATTCTGATTCTGTCA-C
* *
76963285 TTGATTATGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
76963304 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
76963319 ATTCTCATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
17 1 0.02
18 12 0.29
19 27 0.66
20 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (19 bp):
CTGATTCTGATTCTGTCAC
Found at i:76963283 original size:37 final size:37
Alignment explanation
Indices: 76963242--76963335 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
76963232 ATTCTGTTAC
* *
76963242 CTGATACTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTATGATTCTGTCACCTAATTCTGATT
* *
76963279 CTGATTTTGATTATGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTATGATTCTGTCACCTAATTCTGATT
* *
76963316 CTGATTCTCATTTTGATTCT
1 CTGATTCTGATTATGATTCT
76963336 AGTTATGATA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTATGATTCTGTCACCTAATTCTGATT
Found at i:76974129 original size:54 final size:54
Alignment explanation
Indices: 76974063--76974183 Score: 147
Period size: 54 Copynumber: 2.2 Consensus size: 54
76974053 ATTACCAAAG
* * *
76974063 TACCCTCAATTTATAGAATTA-TCGTTTTAACC-TCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAACTACT-GTTTTAACCAT-GATCTACAGAATTACCGTTT
* * *
76974117 TATCCTCGATTTATAGAACTACTGTTTTACCCATGATCTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAACTACTGTTTTAACCATGATCTACAGAATTACCGTTT
*
76974171 TACCCTTGATTTA
1 TACCCTCGATTTA
76974184 CAAAATTACT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
54 55 0.96
55 2 0.04
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAGAACTACTGTTTTAACCATGATCTACAGAATTACCGTTT
Found at i:76974193 original size:27 final size:27
Alignment explanation
Indices: 76974071--76974193 Score: 131
Period size: 27 Copynumber: 4.6 Consensus size: 27
76974061 AGTACCCTCA
* * *
76974071 ATTTATAGAATTA-TCGTTTTAACCTCG
1 ATTTACAGAATTACT-GTTTTACCCTTG
* * *
76974098 ATTTACAGAATTACCGTTTTATCCTCG
1 ATTTACAGAATTACTGTTTTACCCTTG
* * *
76974125 ATTTATAGAACTACTGTTTTACCCATG
1 ATTTACAGAATTACTGTTTTACCCTTG
*
76974152 ATCTACAGAATTACTGTTTTACCCTTG
1 ATTTACAGAATTACTGTTTTACCCTTG
*
76974179 ATTTACAAAATTACT
1 ATTTACAGAATTACT
76974194 AACATACCCT
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (27 bp):
ATTTACAGAATTACTGTTTTACCCTTG
Found at i:76974201 original size:27 final size:27
Alignment explanation
Indices: 76974171--76974428 Score: 128
Period size: 27 Copynumber: 9.6 Consensus size: 27
76974161 ATTACTGTTT
* *
76974171 TACCCTTGATTTACAAAATTACTAACA
1 TACCCTTGATTTACAAAATTACCAAAA
*
76974198 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* * *
76974225 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTTGATTTA-CAAAATTACCAAAA
* * ** ***
76974252 TACCCTAG-TCTGTAAAATTGTTAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* * ** * *
76974278 TACCCCTGGTTTGTAAAATTACCGAAG
1 TACCCTTGATTTACAAAATTACCAAAA
** ** *
76974305 TACCCTCAATTTGTAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* **
76974332 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAA
* *** *
76974359 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGATTTACAAAATTACCAAAA
** **
76974386 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
*
76974413 TACCCCTGATTTACAA
1 TACCCTTGATTTACAA
76974429 CTTTAACTTT
Statistics
Matches: 179, Mismatches: 45, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
26 21 0.12
27 157 0.88
28 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCAAAA
Found at i:76974256 original size:81 final size:80
Alignment explanation
Indices: 76974171--76974428 Score: 279
Period size: 81 Copynumber: 3.2 Consensus size: 80
76974161 ATTACTGTTT
* * ** * * *
76974171 TACCCTTGATTTACAAAATTACTAACATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATC
1 TACCCCTGATTTACAAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTCAATT
*
76974236 AGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* ** ** *
76974252 TA-CCCT-AGTCTGTAAAATTGTTAAAATACCCCTGGTTTGTAAAATTACCGAAGTACCCTCAAT
1 TACCCCTGA-TTTACAAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCGAAATACCCTCAAT
*
76974315 TTGTAAAATTACTAAAA
64 TTGTAAAATTACCAAAA
** * *
76974332 TACCCCT-AGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCCTGA-TTTACAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAAT
76974396 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
76974413 TACCCCTGATTTACAA
1 TACCCCTGATTTACAA
76974429 CTTTAACTTT
Statistics
Matches: 148, Mismatches: 24, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 61 0.41
81 85 0.57
82 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (80 bp):
TACCCCTGATTTACAAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:76974335 original size:54 final size:53
Alignment explanation
Indices: 76974237--76974417 Score: 202
Period size: 54 Copynumber: 3.4 Consensus size: 53
76974227 CCCTCGATCA
* ** *
76974237 GTAAAATTACCAAAATACCCTAGTCTGTAAAATTGTTAAAATACCCCTGGTTT
1 GTAAAATTACCAAAATACCCTAATCTGTAAAATTACTAAAATACCCCTAGTTT
* * *
76974290 GTAAAATTACCGAAGTACCCTCAATTTGTAAAATTACTAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCT-AATCTGTAAAATTACTAAAATACCCCTAGTTT
** * * ** *
76974344 GTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATA-CCCTCAATTT
1 GTAAAATTACCAAAATACC-CTAATCTGTAAAATTACTAAAATACCCCT-AGTTT
76974398 GTAAAATTACCAAAATACCC
1 GTAAAATTACCAAAATACCC
76974418 CTGATTTACA
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 24 0.22
54 84 0.76
55 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (53 bp):
GTAAAATTACCAAAATACCCTAATCTGTAAAATTACTAAAATACCCCTAGTTT
Found at i:76974577 original size:27 final size:26
Alignment explanation
Indices: 76974547--76974637 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 26
76974537 ACCCCTATTA
*
76974547 GGTAAAAAGACCGTAAAGCCTCTGTAG
1 GGTAAAATGACCGTAAAGCC-CTGTAG
* *
76974574 GGTAAAGTGATCGTAAAGCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCTGTAG
* * *
76974600 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCTGTAG
76974627 GGTAAAATGAC
1 GGTAAAATGAC
76974638 GAATATGCCC
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 21 0.38
27 35 0.62
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (26 bp):
GGTAAAATGACCGTAAAGCCCTGTAG
Found at i:76975469 original size:26 final size:26
Alignment explanation
Indices: 76975440--76975547 Score: 153
Period size: 26 Copynumber: 4.2 Consensus size: 26
76975430 GAGGAAGTGC
* * *
76975440 AAAATGGCTTATGCCCAAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
76975466 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
76975492 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
76975518 AAAAGGGCTTATACCCCTGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
76975544 AAAA
1 AAAA
76975548 CCCCAGTTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:76975523 original size:52 final size:52
Alignment explanation
Indices: 76975440--76975657 Score: 296
Period size: 52 Copynumber: 4.4 Consensus size: 52
76975430 GAGGAAGTGC
* *
76975440 AAAATGGCTTATGCCCAAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* * *
76975492 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATACCCCTGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
76975544 -AAA------A--CCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
76975587 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
76975638 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
76975658 ATTAAAGAGG
Statistics
Matches: 147, Mismatches: 10, Indels: 20
0.83 0.06 0.11
Matches are distributed among these distances:
43 37 0.25
44 3 0.02
45 1 0.01
50 10 0.07
51 27 0.18
52 69 0.47
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:76975556 original size:17 final size:17
Alignment explanation
Indices: 76975530--76975564 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
76975520 AAGGGCTTAT
*
76975530 ACCCCTGTTTATCGAAA
1 ACCCCAGTTTATCGAAA
*
76975547 ACCCCAGTTTATTGAAA
1 ACCCCAGTTTATCGAAA
76975564 A
1 A
76975565 GGGCTTATGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (17 bp):
ACCCCAGTTTATCGAAA
Found at i:76975566 original size:43 final size:43
Alignment explanation
Indices: 76975505--76975590 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
76975495 AGGGCTTATG
*
76975505 CCCCAGTTTATTGAAAAGGGCTTATACCCCTGTTTATCGAAAA
1 CCCCAGTTTATTGAAAAGGGCTTATACCCCAGTTTATCGAAAA
*
76975548 CCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCGAAAA
1 CCCCAGTTTATTGAAAAGGGCTTATACCCCAGTTTATCGAAAA
76975591 GGGCTTATGC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.29
Consensus pattern (43 bp):
CCCCAGTTTATTGAAAAGGGCTTATACCCCAGTTTATCGAAAA
Found at i:76975590 original size:69 final size:69
Alignment explanation
Indices: 76975479--76975657 Score: 218
Period size: 69 Copynumber: 2.5 Consensus size: 69
76975469 AGGGCTTATG
*
76975479 CCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATACCCCT-GTTTATC
1 CCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTAT-CCCCTAGTTTATC
76975543 GAAAA
65 GAAAA
** * *
76975548 CCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATGCCCTAGTTTATTG
1 CCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATCCCCTAGTTTATCG
76975613 AAAA
66 AAAA
76975617 GGGCTTTGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTT
1 --------CCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
76975658 ATTAAAGAGG
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
68 4 0.04
69 59 0.63
76 10 0.11
77 21 0.22
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (69 bp):
CCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATCCCCTAGTTTATCG
AAAA
Found at i:76975620 original size:95 final size:94
Alignment explanation
Indices: 76975457--76975641 Score: 316
Period size: 95 Copynumber: 2.0 Consensus size: 94
76975447 CTTATGCCCA
76975457 AGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAA
1 AGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAA
* *
76975522 GGGCTTATACCCCTGTTTATCGAAAACCCC
66 GGGCTT-TACCCCAGTTTACCGAAAACCCC
* *
76975552 AGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATGCCCTAGTTTATTGAAAA
1 AGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAA
*
76975617 GGGCTTTGCCCCAGTTTACCGAAAA
66 GGGCTTTACCCCAGTTTACCGAAAA
76975642 GGGCTTTGCC
Statistics
Matches: 85, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
94 16 0.19
95 69 0.81
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (94 bp):
AGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAA
GGGCTTTACCCCAGTTTACCGAAAACCCC
Found at i:76975632 original size:25 final size:26
Alignment explanation
Indices: 76975548--76975657 Score: 170
Period size: 26 Copynumber: 4.3 Consensus size: 26
76975538 TTATCGAAAA
*
76975548 CCCCAGTTTATTGAAAAGGGCTTATG
1 CCCCAGTTTATCGAAAAGGGCTTATG
76975574 CCCCAGTTTATCGAAAAGGGCTTATG
1 CCCCAGTTTATCGAAAAGGGCTTATG
* *
76975600 CCCTAGTTTATTGAAAAGGGCTT-TG
1 CCCCAGTTTATCGAAAAGGGCTTATG
*
76975625 CCCCAGTTTACCGAAAAGGGCTT-TG
1 CCCCAGTTTATCGAAAAGGGCTTATG
76975650 CCCCAGTT
1 CCCCAGTT
76975658 ATTAAAGAGG
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 32 0.41
26 46 0.59
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (26 bp):
CCCCAGTTTATCGAAAAGGGCTTATG
Found at i:76975642 original size:51 final size:51
Alignment explanation
Indices: 76975548--76975657 Score: 186
Period size: 51 Copynumber: 2.2 Consensus size: 51
76975538 TTATCGAAAA
*
76975548 CCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATG
1 CCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTT-TG
*
76975600 CCCTAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTTTG
1 CCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTG
76975650 CCCCAGTT
1 CCCCAGTT
76975658 ATTAAAGAGG
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
50 9 0.16
51 24 0.44
52 22 0.40
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (51 bp):
CCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTG
Found at i:76975861 original size:42 final size:42
Alignment explanation
Indices: 76975809--76975890 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
76975799 CCCAAATGGG
* ** *
76975809 CTTGCATACATTCATTGGTATTTCATGTGATATTGAAATGAA
1 CTTGCATACATCCATTGACATTACATGTGATATTGAAATGAA
*
76975851 CTTGCATACATCCATTGACCTTACATGTGATATTGAAATG
1 CTTGCATACATCCATTGACATTACATGTGATATTGAAATG
76975891 GGTCTAAGGG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (42 bp):
CTTGCATACATCCATTGACATTACATGTGATATTGAAATGAA
Found at i:76978236 original size:27 final size:27
Alignment explanation
Indices: 76978206--76978337 Score: 174
Period size: 27 Copynumber: 4.9 Consensus size: 27
76978196 ATTACCAAAA
* * *
76978206 TACCCTAGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
**
76978233 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
76978260 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
76978287 TACCCTTGATCTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
76978314 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTACAGAATTACTA
76978338 AAATACCTTT
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:76978344 original size:27 final size:27
Alignment explanation
Indices: 76978167--76978642 Score: 169
Period size: 27 Copynumber: 17.6 Consensus size: 27
76978157 TTAGTTTACC
* * * * *
76978167 AAATTACTGAAATGCCCTCAAATTGTA
1 AAATTACTAAAATACCCTCGATTTATA
* *
76978194 AAATTACCAAAATACCCTAGATTTATA
1 AAATTACTAAAATACCCTCGATTTATA
* **** *
76978221 GAATTACTGTTTTACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* *****
76978248 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACTAAAATACCCTCGATTTATA
* * *** * * *
76978275 GAATTATTATTTTACCCTTGATCTACA
1 AAATTACTAAAATACCCTCGATTTATA
* *** *
76978302 GAATTACTATTTTACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* * * *
76978329 AAATTACTAAAATACCTTTGGTTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* *
76978356 AAATTACCAAAATACCCTCGA-TCAGTA
1 AAATTACTAAAATACCCTCGATTTA-TA
* * * *
76978383 AAATTACCAAAATACCCTAG-TCTGTA
1 AAATTACTAAAATACCCTCGATTTATA
* *
76978409 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTATA
* ** *
76978436 AAATTACCT-AAATACCTTTAATTTGTA
1 AAATTA-CTAAAATACCCTCGATTTATA
* * *
76978463 AAATTACCAAAATACCCT-TAGTTTGTA
1 AAATTACTAAAATACCCTCGA-TTTATA
* * * *
76978490 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACTAAAATACC-CTCGATTTATA
** * * *
76978517 AAATTACCGAAATGCCCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTATA
* *
76978544 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACTAAAATACCCTC-GATTTATA
* * *
76978571 AAGTTAC-AGAAATACCCTTGACTTTCTAA
1 AAATTACTA-AAATACCCTCGA-TTTAT-A
* * * * *
76978600 AAATTA-TGGAAATACCATTGGTTTACA
1 AAATTACT-AAAATACCCTCGATTTATA
76978627 AAATTACTAAAATACC
1 AAATTACTAAAATACC
76978643 ATTGGTTTGT
Statistics
Matches: 354, Mismatches: 77, Indels: 36
0.76 0.16 0.08
Matches are distributed among these distances:
26 27 0.08
27 300 0.85
28 11 0.03
29 16 0.05
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTATA
Found at i:76978523 original size:81 final size:80
Alignment explanation
Indices: 76978328--76978560 Score: 304
Period size: 81 Copynumber: 2.9 Consensus size: 80
76978318 CTCGATTTAC
* ** ** * * **
76978328 AAAATTACTAAAATACCTTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
76978393 AATACCCTAGTCTGT
66 AATACCCTAGTCTGT
* * * * *
76978408 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCTAAATACCTTTAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
*
76978473 AATACCCTTAGTTTGT
66 AATACCC-TAGTCTGT
* *
76978489 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATGCCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
76978554 AATACCC
66 AATACCC
76978561 CTGATTTACA
Statistics
Matches: 134, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
80 62 0.46
81 72 0.54
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
AATACCCTAGTCTGT
Found at i:76978643 original size:27 final size:27
Alignment explanation
Indices: 76978328--76978673 Score: 266
Period size: 27 Copynumber: 12.8 Consensus size: 27
76978318 CTCGATTTAC
* * **
76978328 AAAATTACTAAAATACCTTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
76978355 AAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
76978382 AAAATTACCAAAATACCC-TAGTCTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
76978408 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
76978435 AAAATTACCTAAATACCTTTAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
76978462 AAAATTACCAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
76978489 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCAAAATACC-CTTGGTTTGT
* * * ***
76978516 GAAATTACCGAAATGCCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
76978543 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
76978570 AAAGTTA-CAGAAATACCCTTGACTTTCT
1 AAAATTACCA-AAATACCCTTG-GTTTGT
*** * **
76978598 AAAAATTATGGAAATACCATTGGTTTAC
1 -AAAATTACCAAAATACCCTTGGTTTGT
* *
76978626 AAAATTACTAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
76978653 AGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
76978674 TAGGATGAAA
Statistics
Matches: 251, Mismatches: 61, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
26 24 0.10
27 204 0.81
28 7 0.03
29 16 0.06
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:76978734 original size:27 final size:27
Alignment explanation
Indices: 76978704--76978793 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
76978694 ACCCCCTATT
*
76978704 AGGTAAAAAGATCGTAAAGCCCCTGTA
1 AGGTAAAATGATCGTAAAGCCCCTGTA
*
76978731 AGGTAAAGTGATCGTAAAGCCCCTGTA
1 AGGTAAAATGATCGTAAAGCCCCTGTA
*
76978758 GGGT-AAATGA-CGTAATA-CCCCTGTA
1 AGGTAAAATGATCGTAA-AGCCCCTGTA
*
76978783 TGGTAAAATGA
1 AGGTAAAATGA
76978794 CAATATGCCC
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
25 16 0.29
26 12 0.21
27 28 0.50
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (27 bp):
AGGTAAAATGATCGTAAAGCCCCTGTA
Found at i:76978804 original size:25 final size:24
Alignment explanation
Indices: 76978723--76978798 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 24
76978713 GATCGTAAAG
*
76978723 CCCCTGTAAGGTAAAGTGATCGTAA-A
1 CCCCTGTATGGTAAA-TGA-CG-AATA
*
76978749 GCCCCTGTAGGGTAAATGACGTAATA
1 -CCCCTGTATGGTAAATGACG-AATA
76978775 CCCCTGTATGGTAAAATGAC-AATA
1 CCCCTGTATGGT-AAATGACGAATA
76978799 TGCCCTTATG
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
24 4 0.09
25 16 0.36
26 11 0.24
27 14 0.31
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (24 bp):
CCCCTGTATGGTAAATGACGAATA
Found at i:76979324 original size:25 final size:26
Alignment explanation
Indices: 76979201--76979349 Score: 194
Period size: 26 Copynumber: 5.8 Consensus size: 26
76979191 AAGGAAGTGC
*
76979201 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * * **
76979227 CAAAGGGATTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76979253 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
76979279 AAAAGGGCTGATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
76979305 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76979330 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
76979350 ATTAAAGAGG
Statistics
Matches: 108, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
25 32 0.30
26 76 0.70
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:76979553 original size:42 final size:42
Alignment explanation
Indices: 76979494--76979585 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
76979484 TAGTCTCCCC
* * *** *
76979494 AAATGGGCTTGGATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
76979536 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
76979578 AAATGGGC
1 AAATGGGC
76979586 CTAAGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
Found at i:76983135 original size:18 final size:19
Alignment explanation
Indices: 76983112--76983152 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
76983102 ACATATTAGT
76983112 AGTAGTGA-TTTGAGCTAA
1 AGTAGTGATTTTGAGCTAA
76983130 AGTAGTGATCTTTTGAGCTAA
1 AGTAGTGA--TTTTGAGCTAA
76983151 AG
1 AG
76983153 AATTTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.40
21 12 0.60
ACGTcount: A:0.32, C:0.07, G:0.27, T:0.34
Consensus pattern (19 bp):
AGTAGTGATTTTGAGCTAA
Found at i:76984944 original size:60 final size:60
Alignment explanation
Indices: 76984858--76984994 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 60
76984848 CAGTGTTAAC
* * *
76984858 TGGGCCTTAGCCAATATCAATGTTAATCTGGGCCATAGCCC-CTTAC-AGT-ATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGTCA--AGA-TATAT
* *
76984919 TGGGCCTAGCCCATATCAGTATTAATCTGGGCCGTAGCCCTATTACAAGTCAAGATATAT
1 TGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGTCAAGATATAT
*
76984979 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
76984995 GAACACAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
60 50 0.75
61 13 0.19
62 3 0.04
63 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGTCAAGATATAT
Found at i:76985012 original size:20 final size:19
Alignment explanation
Indices: 76984987--76985042 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
76984977 ATTGGGCCTT
* *
76984987 GCCCATATGAACACAGTTGG
1 GCCCATATCAAAACAGTT-G
*
76985007 GCCCATTTCAAAACAGTTG
1 GCCCATATCAAAACAGTTG
*
76985026 GCCCATAACAAAACAGT
1 GCCCATATCAAAACAGT
76985043 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.20
Consensus pattern (19 bp):
GCCCATATCAAAACAGTTG
Found at i:76988733 original size:28 final size:27
Alignment explanation
Indices: 76988700--76988794 Score: 77
Period size: 33 Copynumber: 3.3 Consensus size: 27
76988690 TCAATGTTTA
76988700 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAATATTAAT
*
76988728 CTGGGCCATAGTGCCTTACAATATC-ATAGTATAT
1 CTGGGCC-TA--GCC---C-ATATCAATATTA-AT
*
76988762 -TGGGCCTAGCCCATATCAGTATTAAT
1 CTGGGCCTAGCCCATATCAATATTAAT
76988788 CTGGGCC
1 CTGGGCC
76988795 GTTGCCCTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 19
0.70 0.05 0.25
Matches are distributed among these distances:
26 7 0.13
27 11 0.20
28 9 0.17
30 6 0.11
32 2 0.04
33 12 0.22
34 7 0.13
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAATATTAAT
Found at i:76988821 original size:60 final size:59
Alignment explanation
Indices: 76988701--76988837 Score: 154
Period size: 60 Copynumber: 2.3 Consensus size: 59
76988691 CAATGTTTAC
*
76988701 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGTGCCTTACAATATCATAGTATAT
1 TGGGCC-TAGCCCATATCAATATTAATCTGGGCCATA-TGCCTTACAATATCAGAGTATAT
* * *
76988762 TGGGCCTAGCCCATATCAGTATTAATCTGGGCCGT-TGCCCTATTACAA-GTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATTAATCTGGGCCATATG-CC--TTACAATATCAGAG-TATAT
*
76988822 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
76988838 TAAAATAGTT
Statistics
Matches: 67, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
58 2 0.03
59 4 0.06
60 49 0.73
61 12 0.18
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATTAATCTGGGCCATATGCCTTACAATATCAGAGTATAT
Done.