Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 237 of 343
Found at i:78028284 original size:48 final size:47
Alignment explanation
Indices: 78028189--78028362 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 47
78028179 GGACTATTGT
* * * *
78028189 GAGCTAGTGTAAGACATGTCTAGGACACGCATC-AGCCAT--ATTACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGAGCC-TCGA-GACGA
*
78028235 GAGCCAGTGTAAGACTATGTCTGGGACATGGCATCGA-CAGT-GAGACGA
1 GAGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGAGC-CTCGAGACGA
* *
78028283 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-AGCCTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGAGCCTCGAGACG-A
*
78028330 -AGCCAGTGAAAGACATGTCTGGGACATGCATCG
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCG
78028363 GTTACGAGTT
Statistics
Matches: 109, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
45 2 0.02
46 55 0.50
47 25 0.23
48 25 0.23
49 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.21
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGAGCCTCGAGACGA
Found at i:78034619 original size:28 final size:27
Alignment explanation
Indices: 78034552--78034621 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
78034542 GGAATATGAT
* *
78034552 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
78034579 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
78034607 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
78034622 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:78034637 original size:55 final size:53
Alignment explanation
Indices: 78034497--78034648 Score: 178
Period size: 55 Copynumber: 2.8 Consensus size: 53
78034487 TAAATTGTAC
* * *
78034497 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAGGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
* ** * * *
78034550 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAA-TATG
* *
78034605 TAGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
78034649 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 40 0.49
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
Found at i:78034653 original size:27 final size:27
Alignment explanation
Indices: 78034498--78034653 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
78034488 AAATTGTACA
* *
78034498 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
78034525 GCACTAAGTGTGCGAAAGGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
78034552 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
78034579 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
78034607 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
78034634 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
78034654 GTGAATAGCA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:78039682 original size:43 final size:43
Alignment explanation
Indices: 78039578--78039695 Score: 143
Period size: 41 Copynumber: 2.8 Consensus size: 43
78039568 TAGGATTTTT
* * *
78039578 GATATGTGATTACGTGTAAGACCATGTCTGGAACATCAGTATC
1 GATATGTGATTACATGTAAGACCATGTCTGGGACATCAGCATC
* * *
78039621 G-TATTTGATT-CTTGTAAGACCTTGTCTGGGACAGTC-GCATC
1 GATATGTGATTACATGTAAGACCATGTCTGGGACA-TCAGCATC
*
78039662 GATATGTGATTACATGTAAGACCACGTCTGGGAC
1 GATATGTGATTACATGTAAGACCATGTCTGGGAC
78039696 GTTGGCATTG
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
41 25 0.40
42 18 0.29
43 20 0.32
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
GATATGTGATTACATGTAAGACCATGTCTGGGACATCAGCATC
Found at i:78039795 original size:56 final size:56
Alignment explanation
Indices: 78039709--78039899 Score: 260
Period size: 56 Copynumber: 3.4 Consensus size: 56
78039699 GGCATTGTAC
* * *
78039709 GATATGTGTCTGTGAGTAAGACCAT-ATTTAATATGTTGGCATCGATATGTGATTCT
1 GATATGTGTGTGCGAGTAAGACC-TCGTTTAATATGTTGGCATCGATATGTGATTCT
*
78039765 GATATGTGTGTGCGAGTAAGACCTCGTTTAATATGTTGGCATCGATATGTGATTCC
1 GATATGTGTGTGCGAGTAAGACCTCGTTTAATATGTTGGCATCGATATGTGATTCT
* * ** *
78039821 GACATGTGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTTT
1 GATATGTGTGTGCGAGTAAGACCTCGTTTAATATGTTGGCATCGATATGTGATTCT
*
78039877 GATATGTGT-TAACGAGTAAGACC
1 GATATGTGTGT-GCGAGTAAGACC
78039900 CTATCTGGGA
Statistics
Matches: 121, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
55 2 0.02
56 119 0.98
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (56 bp):
GATATGTGTGTGCGAGTAAGACCTCGTTTAATATGTTGGCATCGATATGTGATTCT
Found at i:78039916 original size:112 final size:112
Alignment explanation
Indices: 78039712--78039926 Score: 265
Period size: 112 Copynumber: 1.9 Consensus size: 112
78039702 ATTGTACGAT
* * ** *
78039712 ATGTGTCTGTGAGTAAGACCATATTTAATATGTTGGCATCGATATGTGATTCTGATATGTGTGTG
1 ATGTGTCTGCGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCTGATATGTGTGTA
* **
78039777 CGAGTAAGACCTCGTTTAATATGTTGGCATCGATATGTGATTCCGAC
66 CGAGTAAGACCTCGTTTAAGACATTGGCATCGATATGTGATTCCGAC
* * *
78039824 ATGTGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTTTGATATGTGT-TA
1 ATGTGTCTGCGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCTGATATGTGTGT-
**
78039888 ACGAGTAAGACC-C-TATCTGGGACATTGGCATCGATATGT
65 ACGAGTAAGACCTCGT-T-TAAGACATTGGCATCGATATGT
78039927 AATTACATGT
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
110 1 0.01
111 3 0.03
112 83 0.95
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (112 bp):
ATGTGTCTGCGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCTGATATGTGTGTA
CGAGTAAGACCTCGTTTAAGACATTGGCATCGATATGTGATTCCGAC
Found at i:78041256 original size:13 final size:14
Alignment explanation
Indices: 78041228--78041260 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
78041218 CATTTTGACC
*
78041228 ATGTTTATATTTAT
1 ATGTTTATATTGAT
78041242 ATGTTT-TATTGAT
1 ATGTTTATATTGAT
78041255 ATGTTT
1 ATGTTT
78041261 GTTTTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (14 bp):
ATGTTTATATTGAT
Found at i:78046445 original size:39 final size:40
Alignment explanation
Indices: 78046400--78046567 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
78046390 CGGGGTTTAG
* * *
78046400 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
78046439 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
78046479 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
78046519 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
78046560 CCGGATAT
1 CCGGATAT
78046568 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:78046550 original size:41 final size:40
Alignment explanation
Indices: 78046423--78046567 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
78046413 CTCGCACAAG
* * * * *
78046423 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
78046463 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
78046503 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
78046544 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
78046568 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:78047798 original size:38 final size:38
Alignment explanation
Indices: 78047756--78047831 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
78047746 CAAGAACTCC
78047756 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
78047794 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
78047832 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:78053641 original size:41 final size:40
Alignment explanation
Indices: 78053514--78053658 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
78053504 CTCGCACAAG
* * * * * *
78053514 GCCTTCAGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
78053554 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
78053594 GCCTTC-GGATCTTAGTCCGGATGTAGTTGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
78053635 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
78053659 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:78054890 original size:38 final size:38
Alignment explanation
Indices: 78054848--78054920 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
78054838 GAACTCCTTT
78054848 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATTC
1 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATTC
78054886 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
78054921 AAAGGATGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (38 bp):
CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATTC
Found at i:78062869 original size:25 final size:25
Alignment explanation
Indices: 78062828--78062879 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
78062818 TGTGTAATAA
78062828 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
78062853 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
78062878 TG
1 TG
78062880 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:78066784 original size:47 final size:47
Alignment explanation
Indices: 78066706--78066969 Score: 402
Period size: 47 Copynumber: 5.6 Consensus size: 47
78066696 TATTTGAATA
78066706 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
78066755 AATGTGAAATTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
78066802 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
78066849 AATGTGAAAGTGTATATATGTGATAAGGCCTACTGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
78066896 AATGTGAAAGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
78066943 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
78066970 TCCCGAAGGG
Statistics
Matches: 198, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 187 0.94
49 11 0.06
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:78066822 original size:25 final size:25
Alignment explanation
Indices: 78066794--78066872 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
78066784 CTAGTGGCCG
78066794 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
78066819 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
78066841 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
78066866 ATGTGAT
1 ATGTGAT
78066873 AAGGCCTACT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:78067189 original size:37 final size:37
Alignment explanation
Indices: 78067088--78067189 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
78067078 CCGAGCTCTA
*
78067088 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
78067125 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
78067162 AAGACCCGATAACTTCATGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
78067190 CGTCTGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:78074792 original size:47 final size:49
Alignment explanation
Indices: 78074724--78074854 Score: 135
Period size: 55 Copynumber: 2.6 Consensus size: 49
78074714 GTGATTACAT
*
78074724 GTAAGACCACGTTTGGA-ACGTTGGCATTGT-A-C-GATATGTGTATGCGA
1 GTAAGACCACGTTT-AATACGTTGGCATTGTGATCTG-TATGTGTATGCGA
*
78074771 GTAAGACCACGTTTAATACGTTGGAATCAATATGTGATTCTGTATGTGTGTGCGA
1 GTAAGACCACGTTTAATACGTTGG---C-AT-TGTGA-TCTGTATGTGTATGCGA
*
78074826 GTAAGACCACATTTAATACGTTGGCATTG
1 GTAAGACCACGTTTAATACGTTGGCATTG
78074855 ATATGTGATT
Statistics
Matches: 71, Mismatches: 3, Indels: 17
0.78 0.03 0.19
Matches are distributed among these distances:
46 1 0.01
47 21 0.30
50 3 0.04
51 4 0.06
52 4 0.06
53 1 0.01
55 36 0.51
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (49 bp):
GTAAGACCACGTTTAATACGTTGGCATTGTGATCTGTATGTGTATGCGA
Found at i:78074818 original size:55 final size:56
Alignment explanation
Indices: 78074755--78074889 Score: 191
Period size: 55 Copynumber: 2.4 Consensus size: 56
78074745 TGGCATTGTA
*
78074755 CGATATGTGTATGCGAGTAAGACCACGTTTAATACGTTGGAATCAATATGTGATTC
1 CGATATGTGTATGCGAGTAAGACCACATTTAATACGTTGGAATCAATATGTGATTC
* * * **
78074811 TG-TATGTGTGTGCGAGTAAGACCACATTTAATACGTTGGCATTGATATGTGATTC
1 CGATATGTGTATGCGAGTAAGACCACATTTAATACGTTGGAATCAATATGTGATTC
* *
78074866 CGATATGTGTTTACGAGTAAGACC
1 CGATATGTGTATGCGAGTAAGACC
78074890 TTATTTGGGA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
55 49 0.71
56 20 0.29
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.33
Consensus pattern (56 bp):
CGATATGTGTATGCGAGTAAGACCACATTTAATACGTTGGAATCAATATGTGATTC
Found at i:78076215 original size:13 final size:14
Alignment explanation
Indices: 78076187--78076219 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
78076177 CATTTTGACC
*
78076187 ATGTTTATATTTAT
1 ATGTTTATATTGAT
78076201 ATGTTT-TATTGAT
1 ATGTTTATATTGAT
78076214 ATGTTT
1 ATGTTT
78076220 GTTTTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (14 bp):
ATGTTTATATTGAT
Found at i:78078810 original size:27 final size:27
Alignment explanation
Indices: 78078770--78078840 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
78078760 TCTCCCTTAG
78078770 GGGAATTTCGGTAATTTTAAAAGTCAA
1 GGGAATTTCGGTAATTTTAAAAGTCAA
* * * * * *
78078797 GGGTATTTCAGTAATTATATAGGTCGA
1 GGGAATTTCGGTAATTTTAAAAGTCAA
78078824 GGGAATTTCGGTAATTT
1 GGGAATTTCGGTAATTT
78078841 CACACATTAA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (27 bp):
GGGAATTTCGGTAATTTTAAAAGTCAA
Found at i:78080205 original size:4 final size:4
Alignment explanation
Indices: 78080196--78080225 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
78080186 AGGTATTTGC
78080196 AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
78080226 ACAAAAGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:78083905 original size:40 final size:40
Alignment explanation
Indices: 78083850--78084026 Score: 277
Period size: 40 Copynumber: 4.5 Consensus size: 40
78083840 CGGATGATAA
*
78083850 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
78083890 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
78083930 CCGGGCTAAGACCCGAACGTATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
78083970 CCGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
78084010 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
78084027 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 113 0.90
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:78084295 original size:22 final size:22
Alignment explanation
Indices: 78084253--78084296 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
78084243 AAAATGTGCA
* *
78084253 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
78084275 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
78084297 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:78092092 original size:40 final size:40
Alignment explanation
Indices: 78092033--78092209 Score: 259
Period size: 40 Copynumber: 4.5 Consensus size: 40
78092023 CGGATGATAA
*
78092033 CCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
78092073 CCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
78092113 TCGGGCTAAGACCCGAAGGTATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
78092153 CCGGGCTAGGACCCGAAGGCATTTGTGTGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
78092193 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
78092210 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 110 0.89
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:78092478 original size:22 final size:22
Alignment explanation
Indices: 78092436--78092479 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
78092426 AAAATGTGCA
* *
78092436 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
78092458 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
78092480 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:78094920 original size:18 final size:18
Alignment explanation
Indices: 78094897--78095000 Score: 64
Period size: 18 Copynumber: 5.4 Consensus size: 18
78094887 TAATTTAGTC
78094897 ATTCAGTAACTATCAAGT
1 ATTCAGTAACTATCAAGT
* **
78094915 ATTCAGTACAGTAGTTTAGTT
1 ATTCAGTA-ACTA-TCAAG-T
* *
78094936 ATTCAATAACTATCAATT
1 ATTCAGTAACTATCAAGT
* * **
78094954 ATTCAATATAGTAATTTAGTT
1 ATTCAGTA-ACT-ATCAAG-T
*
78094975 ATTCAGTAACTATCAATT
1 ATTCAGTAACTATCAAGT
78094993 ATTCAGTA
1 ATTCAGTA
78095001 CAGTAGTTTA
Statistics
Matches: 63, Mismatches: 17, Indels: 12
0.68 0.18 0.13
Matches are distributed among these distances:
18 26 0.41
19 10 0.16
20 11 0.17
21 16 0.25
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (18 bp):
ATTCAGTAACTATCAAGT
Found at i:78094933 original size:39 final size:39
Alignment explanation
Indices: 78094874--78095010 Score: 202
Period size: 39 Copynumber: 3.5 Consensus size: 39
78094864 TAACAATTAG
* *
78094874 TTATTCAGTACAATAATTTAGTCATTCAGTAACTATCAA
1 TTATTCAGTACAGTAATTTAGTTATTCAGTAACTATCAA
* * *
78094913 GTATTCAGTACAGTAGTTTAGTTATTCAATAACTATCAA
1 TTATTCAGTACAGTAATTTAGTTATTCAGTAACTATCAA
* *
78094952 TTATTCAATATAGTAATTTAGTTATTCAGTAACTATCAA
1 TTATTCAGTACAGTAATTTAGTTATTCAGTAACTATCAA
*
78094991 TTATTCAGTACAGTAGTTTA
1 TTATTCAGTACAGTAATTTA
78095011 CCCCCATTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.41
Consensus pattern (39 bp):
TTATTCAGTACAGTAATTTAGTTATTCAGTAACTATCAA
Found at i:78094956 original size:78 final size:78
Alignment explanation
Indices: 78094860--78095010 Score: 230
Period size: 78 Copynumber: 1.9 Consensus size: 78
78094850 TATCATACAA
* * *
78094860 TCAATAACAATTAGTTATTCAGTACAATAATTTAGTCATTCAGTAACTATCAAGTATTCAGTACA
1 TCAATAACAATCAATTATTCAATACAATAATTTAGTCATTCAGTAACTATCAAGTATTCAGTACA
78094925 GTAGTTTAGTTAT
66 GTAGTTTAGTTAT
* * * * *
78094938 TCAATAACTATCAATTATTCAATATAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
1 TCAATAACAATCAATTATTCAATACAATAATTTAGTCATTCAGTAACTATCAAGTATTCAGTACA
78095003 GTAGTTTA
66 GTAGTTTA
78095011 CCCCCATTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 65 1.00
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.40
Consensus pattern (78 bp):
TCAATAACAATCAATTATTCAATACAATAATTTAGTCATTCAGTAACTATCAAGTATTCAGTACA
GTAGTTTAGTTAT
Found at i:78095202 original size:44 final size:44
Alignment explanation
Indices: 78095153--78095244 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
78095143 TCGAAGTGAC
*
78095153 AGTAACAGTACGACACACA-AGGTGCCTCATCGACTCAAAGTCAA
1 AGTAACAGTACGACACACATA-GTGCCTCATCAACTCAAAGTCAA
** * *
78095197 AGTAACAGTACGACACTTATAGTGCCTCATCAACTCAAGGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCAACTCAAAGTCAA
78095241 AGTA
1 AGTA
78095245 TCCCTGAGCA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 41 0.98
45 1 0.02
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (44 bp):
AGTAACAGTACGACACACATAGTGCCTCATCAACTCAAAGTCAA
Found at i:78103043 original size:24 final size:24
Alignment explanation
Indices: 78103016--78103194 Score: 177
Period size: 24 Copynumber: 7.5 Consensus size: 24
78103006 TACTTTACAT
* * *
78103016 ACATATTGACATTCAAATCCGCAC
1 ACATAGTGCCATTCAAATTCGCAC
*
78103040 ACATAGTGCCATAT-AAATCCGCAC
1 ACATAGTGCCAT-TCAAATTCGCAC
* *
78103064 ACATAGTGCCATACAAATTCGCAA
1 ACATAGTGCCATTCAAATTCGCAC
* * *
78103088 ACATAGTACC-TT-AGTAATTCACAT
1 ACATAGTGCCATTCA--AATTCGCAC
* * *
78103112 ACATATTGACATTCAAATCCGCAC
1 ACATAGTGCCATTCAAATTCGCAC
78103136 ACATAGTGCCATAT-AAATTCGCAC
1 ACATAGTGCCAT-TCAAATTCGCAC
*
78103160 ACATAGTGCCATTCAAATTAGCAC
1 ACATAGTGCCATTCAAATTCGCAC
78103184 ACATAGTGCCA
1 ACATAGTGCCA
78103195 AAGTCATTTC
Statistics
Matches: 128, Mismatches: 19, Indels: 16
0.79 0.12 0.10
Matches are distributed among these distances:
22 1 0.01
23 2 0.02
24 120 0.94
25 4 0.03
26 1 0.01
ACGTcount: A:0.38, C:0.26, G:0.11, T:0.25
Consensus pattern (24 bp):
ACATAGTGCCATTCAAATTCGCAC
Found at i:78103046 original size:48 final size:48
Alignment explanation
Indices: 78102986--78103193 Score: 213
Period size: 48 Copynumber: 4.3 Consensus size: 48
78102976 CCATGTTAAC
* *
78102986 CCGCACACATAGTGCCTTAGTACTTTACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
* * * * * * *
78103034 CCGCACACATAGTGCCATA-TAAATCCGCACACATAGTGCCATACAAAT
1 CCGCACACATAGTGCCTTAGT-AATTCACATACATATTGACATTCAAAT
* * *
78103082 TCGCAAACATAGTACCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
* * * * *
78103130 CCGCACACATAGTGCCATA-TAAATTCGCACACATAGTGCCATTCAAAT
1 CCGCACACATAGTGCCTTAGT-AATTCACATACATATTGACATTCAAAT
**
78103178 TAGCACACATAGTGCC
1 CCGCACACATAGTGCC
78103194 AAAGTCATTT
Statistics
Matches: 128, Mismatches: 29, Indels: 6
0.79 0.18 0.04
Matches are distributed among these distances:
47 2 0.02
48 125 0.98
49 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (48 bp):
CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
Found at i:78103103 original size:96 final size:96
Alignment explanation
Indices: 78102987--78103190 Score: 345
Period size: 96 Copynumber: 2.1 Consensus size: 96
78102977 CATGTTAACC
* * *
78102987 CGCACACATAGTGCCTTAGTACTTTACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTACCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
78103052 ATAAATCCGCACACATAGTGCCATACAAATT
66 ATAAATCCGCACACATAGTGCCATACAAATT
*
78103083 CGCAAACATAGTACCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTACCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
* *
78103148 ATAAATTCGCACACATAGTGCCATTCAAATT
66 ATAAATCCGCACACATAGTGCCATACAAATT
*
78103179 AGCACACATAGT
1 CGCACACATAGT
78103191 GCCAAAGTCA
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 100 1.00
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (96 bp):
CGCACACATAGTACCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
ATAAATCCGCACACATAGTGCCATACAAATT
Found at i:78103194 original size:48 final size:48
Alignment explanation
Indices: 78103016--78103194 Score: 216
Period size: 48 Copynumber: 3.7 Consensus size: 48
78103006 TACTTTACAT
* *
78103016 ACATATTGACATTCAAATCCGCACACATAGTGCCATATAAATCCGCAC
1 ACATAGTGACATTCAAATCCGCACACATAGTGCCATATAAATTCGCAC
* * * * * * * *
78103064 ACATAGTGCCATACAAATTCGCAAACATAGTACCTTAGT-AATTCACAT
1 ACATAGTGACATTCAAATCCGCACACATAGTGCCATA-TAAATTCGCAC
*
78103112 ACATATTGACATTCAAATCCGCACACATAGTGCCATATAAATTCGCAC
1 ACATAGTGACATTCAAATCCGCACACATAGTGCCATATAAATTCGCAC
* **
78103160 ACATAGTGCCATTCAAATTAGCACACATAGTGCCA
1 ACATAGTGACATTCAAATCCGCACACATAGTGCCA
78103195 AAGTCATTTC
Statistics
Matches: 106, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
47 1 0.01
48 104 0.98
49 1 0.01
ACGTcount: A:0.38, C:0.26, G:0.11, T:0.25
Consensus pattern (48 bp):
ACATAGTGACATTCAAATCCGCACACATAGTGCCATATAAATTCGCAC
Found at i:78107103 original size:14 final size:14
Alignment explanation
Indices: 78107084--78107122 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
78107074 AAAAAGAAAA
78107084 TTTGGGAAAATACT
1 TTTGGGAAAATACT
*
78107098 TTTGGGAAAATATT
1 TTTGGGAAAATACT
78107112 TTTGGGAAAAT
1 TTTGGGAAAAT
78107123 TTGATTGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (14 bp):
TTTGGGAAAATACT
Found at i:78115905 original size:40 final size:40
Alignment explanation
Indices: 78115868--78116091 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
78115858 GCTACTCGTT
*
78115868 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
78115908 CAAATGCCTTCGGGACTTA-ACCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
78115947 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
78115987 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
78116026 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
78116067 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78116092 CATCATTCGA
Statistics
Matches: 162, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 67 0.41
40 82 0.51
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:78115971 original size:79 final size:79
Alignment explanation
Indices: 78115835--78116084 Score: 276
Period size: 79 Copynumber: 3.2 Consensus size: 79
78115825 AAATCACGTA
* * * ** *
78115835 CCTTCGGAATTTAACCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAG
1 CCTTCGGGACTTAACCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
78115899 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
78115914 CCTTCGGGACTTAACCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TAG
1 CCTTCGGGACTTAACCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAG
*
78115978 TAACTCGCACCAATG
65 TAACTCGCACAAATG
* * * * * *
78115993 CCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATG
1 CCTTCGGGACTTA-ACCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATA
* *
78116056 GTCACTTAGCACAAA-G
64 GTAAC-TCGCACAAATG
78116072 CCTTCGGGACTTA
1 CCTTCGGGACTTA
78116085 GCCCGGACAT
Statistics
Matches: 146, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
78 9 0.06
79 124 0.85
80 13 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
AACTCGCACAAATG
Found at i:78117287 original size:56 final size:56
Alignment explanation
Indices: 78117220--78117339 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
78117210 TATTAGTTTA
78117220 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
78117276 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
78117332 TTGCCCAT
1 TTGCCCAT
78117340 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:78123767 original size:39 final size:40
Alignment explanation
Indices: 78123661--78123884 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
78123651 GCTACTCGTT
*
78123661 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
78123701 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
78123741 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
78123780 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
78123819 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
78123860 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78123885 CATCATTCGA
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 70 0.43
40 78 0.48
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:78123773 original size:79 final size:79
Alignment explanation
Indices: 78123661--78123884 Score: 292
Period size: 79 Copynumber: 2.8 Consensus size: 79
78123651 GCTACTCGTT
* *
78123661 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
78123725 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* *
78123741 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
78123805 ATTAGTATCTCGCA
66 ATTAGTAACTCGCA
* * * * *
78123819 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
78123883 GA
64 GA
78123885 CATCATTCGA
Statistics
Matches: 127, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
78 36 0.28
79 60 0.47
80 31 0.24
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:78125077 original size:56 final size:56
Alignment explanation
Indices: 78125010--78125129 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
78125000 TATTAGTTTA
78125010 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
78125066 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
78125122 TTGCCCAT
1 TTGCCCAT
78125130 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:78131743 original size:40 final size:40
Alignment explanation
Indices: 78131706--78131930 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
78131696 GCTACTCGTT
* *
78131706 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
78131746 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
78131786 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
78131826 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
78131865 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
78131906 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
78131931 CTTCATTCGA
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 116 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:78131891 original size:119 final size:120
Alignment explanation
Indices: 78131708--78131930 Score: 294
Period size: 119 Copynumber: 1.9 Consensus size: 120
78131698 TACTCGTTCA
*
78131708 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
* *
78131773 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * *
78131828 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTT-AGTCCG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-CG
* * *
78131889 GATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
78131931 CTTCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
118 6 0.07
119 64 0.71
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:78133122 original size:56 final size:56
Alignment explanation
Indices: 78133055--78133174 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
78133045 TATTAGTTTA
78133055 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGGTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGGTTCATGACATGTT
* *
78133111 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGGTTCATGACATGTT
78133167 TTGCCCAT
1 TTGCCCAT
78133175 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGGTTCATGACATGTT
Found at i:78133506 original size:18 final size:18
Alignment explanation
Indices: 78133483--78133544 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
78133473 AGTAGTTTAG
78133483 TTATTCAATAACTATCAA
1 TTATTCAATAACTATCAA
* * *
78133501 TTATTCAATATAGTAATTTAG
1 TTATTCAATA-ACT-A-TCAA
*
78133522 TTATTCAGTAACTATCAA
1 TTATTCAATAACTATCAA
78133540 TTATT
1 TTATT
78133545 TAGTATAGTA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 17 0.50
19 3 0.09
20 3 0.09
21 11 0.32
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (18 bp):
TTATTCAATAACTATCAA
Found at i:78133534 original size:39 final size:39
Alignment explanation
Indices: 78133473--78133559 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
78133463 CTGTCACAGC
78133473 AGTAGTTTAGTTATTCAATAACTATCAATTATTCAATAT
1 AGTAGTTTAGTTATTCAATAACTATCAATTATTCAATAT
* * * *
78133512 AGTAATTTAGTTATTCAGTAACTATCAATTATTTAGTAT
1 AGTAGTTTAGTTATTCAATAACTATCAATTATTCAATAT
78133551 AGTAGTTTA
1 AGTAGTTTA
78133560 TCCCTATTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (39 bp):
AGTAGTTTAGTTATTCAATAACTATCAATTATTCAATAT
Found at i:78134152 original size:4 final size:4
Alignment explanation
Indices: 78134133--78134182 Score: 52
Period size: 4 Copynumber: 13.0 Consensus size: 4
78134123 AAATTCCCTA
* *
78134133 TTTC TTTT TCTTC TTTC TTTC -TTC TTTG TTTC -TTC TTTC TTTC -TTC
1 TTTC TTTC T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
78134179 TTTC
1 TTTC
78134183 CCTACTCTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
3 9 0.24
4 26 0.68
5 3 0.08
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:78134155 original size:11 final size:11
Alignment explanation
Indices: 78134139--78134182 Score: 79
Period size: 11 Copynumber: 4.0 Consensus size: 11
78134129 CCTATTTCTT
78134139 TTTCTTCTTTC
1 TTTCTTCTTTC
*
78134150 TTTCTTCTTTG
1 TTTCTTCTTTC
78134161 TTTCTTCTTTC
1 TTTCTTCTTTC
78134172 TTTCTTCTTTC
1 TTTCTTCTTTC
78134183 CCTACTCTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.00, C:0.25, G:0.02, T:0.73
Consensus pattern (11 bp):
TTTCTTCTTTC
Found at i:78154477 original size:44 final size:43
Alignment explanation
Indices: 78154404--78154566 Score: 175
Period size: 43 Copynumber: 3.8 Consensus size: 43
78154394 ATAGGATTCT
* * *
78154404 GATATGTGATTTCGTGTAAGACCACGTCTGGGAAATTGGCATC
1 GATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCATC
* * *
78154447 GATTTGTGATTTGCATGTAAGTCCATGTCTGGGACATCGGCATC
1 GATATGTGATTT-CATGTAAGACCATGTCTGGGACATTGGCATC
* * * * * *
78154491 G-TATATGAGTTCATGTAAGACCTTGTCTAGGACAGTGGCGTC
1 GATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCATC
* * *
78154533 GATATGTGATTACATGTAAGACCACGTTTGGGAC
1 GATATGTGATTTCATGTAAGACCATGTCTGGGAC
78154567 GTCGGCGTTG
Statistics
Matches: 96, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
42 26 0.27
43 43 0.45
44 27 0.28
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
GATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCATC
Found at i:78154524 original size:42 final size:43
Alignment explanation
Indices: 78154404--78154556 Score: 123
Period size: 42 Copynumber: 3.6 Consensus size: 43
78154394 ATAGGATTCT
* * * * * * *
78154404 GATATGTGATTTCGTGTAAGACCACGTCTGGGAAATTGGCATC
1 GATATGAGATTACATGTAAGACCATGTCTAGGACAGTGGCATC
* * * * *
78154447 GATTTGTGATTTGCATGTAAGTCCATGTCTGGGACA-TCGGCATC
1 GATATGAGA-TTACATGTAAGACCATGTCTAGGACAGT-GGCATC
* *
78154491 GTATATGAG-TT-CATGTAAGACCTTGTCTAGGACAGTGGCGTC
1 G-ATATGAGATTACATGTAAGACCATGTCTAGGACAGTGGCATC
*
78154533 GATATGTGATTACATGTAAGACCA
1 GATATGAGATTACATGTAAGACCA
78154557 CGTTTGGGAC
Statistics
Matches: 90, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
41 6 0.07
42 28 0.31
43 23 0.26
44 28 0.31
45 5 0.06
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
GATATGAGATTACATGTAAGACCATGTCTAGGACAGTGGCATC
Found at i:78161906 original size:43 final size:42
Alignment explanation
Indices: 78161850--78162006 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 42
78161840 ATATTGTACA
* *
78161850 ATGCCAACT-TCCTAGATGTGGTCTTACATGTAATCACATGTCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACATG-AATCACAT-TCG
* *
78161893 ATGCC-ACTGTCCTAGACAGT-GTCTTACACGAATCACAATTACG
1 ATGCCAACTGTCCCAGAC-GTGGTCTTACATGAATCAC-ATT-CG
* *
78161936 ATGCCAA-TGTCCCAGACATGGTCTTA-ATCGAAATCACATATCA
1 ATGCCAACTGTCCCAGACGTGGTCTTACAT-G-AATCACAT-TCG
78161979 ATGCCAAC-GTCCCAGACGTGGTCTTACA
1 ATGCCAACTGTCCCAGACGTGGTCTTACA
78162007 CGAGAACACA
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
42 12 0.12
43 73 0.76
44 11 0.11
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCAACTGTCCCAGACGTGGTCTTACATGAATCACATTCG
Found at i:78162563 original size:28 final size:26
Alignment explanation
Indices: 78162529--78162580 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
78162519 CACAATTCAT
*
78162529 TTATTTTACATTTTAGTCCCTCAATTTA
1 TTATTTTACAATTTAG-CCCT-AATTTA
*
78162557 TTATTTTGCAATTTAGCCCTAATT
1 TTATTTTACAATTTAGCCCTAATT
78162581 ACTCAAATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 4 0.18
28 14 0.64
ACGTcount: A:0.25, C:0.17, G:0.06, T:0.52
Consensus pattern (26 bp):
TTATTTTACAATTTAGCCCTAATTTA
Found at i:78162778 original size:17 final size:18
Alignment explanation
Indices: 78162747--78162781 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
78162737 GAGGCAACGA
78162747 TATCAAAAACGTAAAAAT
1 TATCAAAAACGTAAAAAT
78162765 TATCAAAAAC-TAAAAAT
1 TATCAAAAACGTAAAAAT
78162782 AAAACATACC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.63, C:0.11, G:0.03, T:0.23
Consensus pattern (18 bp):
TATCAAAAACGTAAAAAT
Found at i:78167974 original size:31 final size:31
Alignment explanation
Indices: 78167929--78168039 Score: 170
Period size: 31 Copynumber: 3.6 Consensus size: 31
78167919 TTAGTCTTGA
*
78167929 CATAT-ACTGGGCCGAAGCCTTTTCGTAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
78167959 CATATCATTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
78167990 CAAATCACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
78168021 CATATCACTGGGCAGAAGC
1 CATATCACTGGGCCGAAGC
78168040 ATTTACTGTA
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 5 0.07
31 68 0.93
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:78168114 original size:42 final size:42
Alignment explanation
Indices: 78168067--78168158 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
78168057 TGGCCCTTAG
* ** *
78168067 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATACAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
*
78168109 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
78168151 GCCCATTT
1 GCCCATTT
78168159 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATACAA
Found at i:78169280 original size:27 final size:27
Alignment explanation
Indices: 78169250--78169335 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
78169240 GTAAATCTAC
78169250 AAACCAAGGGTATTTCGT-TAATTTTGT
1 AAACCAAGGGTATTTC-TATAATTTTGT
*
78169277 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* * *
78169303 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
78169333 AAA
1 AAA
78169336 TTAGGGGTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
26 2 0.04
27 22 0.45
28 6 0.12
29 18 0.37
30 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:78169418 original size:27 final size:27
Alignment explanation
Indices: 78169402--78169585 Score: 192
Period size: 27 Copynumber: 6.8 Consensus size: 27
78169392 GAAGGTATTT
* *
78169402 TGATAATTTTGTAAATCGAGGGTAAAA
1 TGATAATTCTATAAATCGAGGGTAAAA
78169429 TGATAATTCTATAAATCGAGGGTAAAA
1 TGATAATTCTATAAATCGAGGGTAAAA
* * *
78169456 CGGTAATTCTATAAATCAAGGGTAAAA
1 TGATAATTCTATAAATCGAGGGTAAAA
* ** *
78169483 -CAGTAATTCTAGGAACCGAGGGTAAAA
1 TGA-TAATTCTATAAATCGAGGGTAAAA
* * * *
78169510 CGGTAATTTTGTAAATCGAGGGTAAAA
1 TGATAATTCTATAAATCGAGGGTAAAA
* *
78169537 -CAGTAATTCTATAAATTGAGGGTAAAA
1 TGA-TAATTCTATAAATCGAGGGTAAAA
*
78169564 TGGTAATTCTATAAATCGAGGG
1 TGATAATTCTATAAATCGAGGG
78169586 CATTTTATTA
Statistics
Matches: 127, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TGATAATTCTATAAATCGAGGGTAAAA
Found at i:78169490 original size:81 final size:81
Alignment explanation
Indices: 78169405--78169585 Score: 220
Period size: 81 Copynumber: 2.2 Consensus size: 81
78169395 GGTATTTTGA
* *
78169405 TAATTTTGTAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAA
1 TAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAA
78169470 ATCAAGGGTAAAACAG
66 ATCAAGGGTAAAACAG
* * * * * *
78169486 TAATTCTAG-GAACCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATA
1 TAATT-TTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTATA
** **
78169550 AATTGAGGGTAAAATGG
65 AATCAAGGGTAAAACAG
* *
78169567 TAATTCTATAAATCGAGGG
1 TAATTTTGTAAATCGAGGG
78169586 CATTTTATTA
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
81 79 0.98
82 2 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
TAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAA
ATCAAGGGTAAAACAG
Found at i:78169598 original size:54 final size:54
Alignment explanation
Indices: 78169413--78169585 Score: 249
Period size: 54 Copynumber: 3.2 Consensus size: 54
78169403 GATAATTTTG
*
78169413 TAAATCGAGGGTAAAA-TGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACAG-TAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
* ** * * *
78169467 TAAATCAAGGGTAAAACAGTAATTCTAGGAACCGAGGGTAAAACGGTAATTTTG
1 TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
* *
78169521 TAAATCGAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
78169575 TAAATCGAGGG
1 TAAATCGAGGG
78169586 CATTTTATTA
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 102 0.99
55 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.27
Consensus pattern (54 bp):
TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
Found at i:78169667 original size:27 final size:27
Alignment explanation
Indices: 78169566--78169735 Score: 159
Period size: 27 Copynumber: 6.3 Consensus size: 27
78169556 GGGTAAAATG
* * * *
78169566 GTAATTCTATAAATCGAGGGCATTTTA
1 GTAATTTTACAAATCGAGGGTATTTCA
* * *
78169593 TTAATTTTAC-AATCGATGGTATTTCG
1 GTAATTTTACAAATCGAGGGTATTTCA
* *
78169619 GTAATTTTATAAATC-AGGGGTACTTT-G
1 GTAATTTTACAAATCGA-GGGTA-TTTCA
* *
78169646 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
78169673 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
* * *
78169700 GTAATTTTACAAA-CTAAGGTTATTTCG
1 GTAATTTTACAAATC-GAGGGTATTTCA
78169727 GTAATTTTA
1 GTAATTTTA
78169736 GTAAACTAAA
Statistics
Matches: 118, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
26 25 0.21
27 89 0.75
28 4 0.03
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTCA
Found at i:78169687 original size:54 final size:53
Alignment explanation
Indices: 78169565--78169735 Score: 193
Period size: 54 Copynumber: 3.2 Consensus size: 53
78169555 AGGGTAAAAT
* * * * * *
78169565 GGTAATTCTATAAATCGAGGGCATTTTATTAATTTTACAATCGATGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAAGGTATTTC
* *
78169618 GGTAATTTTATAAATC-AGGGGTACTTT-GGTAATTTTACAAGTCGAAGGTATTTC
1 GGTAATTTTACAAATCGA-GGGTA-TTTCAGTAATTTTACAA-TCGAAGGTATTTC
* * *
78169672 AGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTAAGGTTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAAGG-TATTTC
78169726 GGTAATTTTA
1 GGTAATTTTA
78169736 GTAAACTAAA
Statistics
Matches: 101, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
52 1 0.01
53 38 0.38
54 61 0.60
55 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (53 bp):
GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAAGGTATTTC
Found at i:78169750 original size:27 final size:26
Alignment explanation
Indices: 78169646--78169750 Score: 93
Period size: 27 Copynumber: 3.9 Consensus size: 26
78169636 GGGTACTTTG
* * *
78169646 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-ACTAAAGTATTTCA
* **
78169673 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAA-CTAAAGTATTTCA
* *
78169700 GTAATTTTACAAACTAAGGTTATTTCG
1 GTAATTTTACAAACTAAAG-TATTTCA
*
78169727 GTAATTTTAGTAAACTAAAGTATT
1 GTAATTTTA-CAAACTAAAGTATT
78169751 CTATACAAGG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 4 0.06
27 56 0.82
28 8 0.12
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAAACTAAAGTATTTCA
Found at i:78171972 original size:31 final size:31
Alignment explanation
Indices: 78171927--78172072 Score: 240
Period size: 31 Copynumber: 4.7 Consensus size: 31
78171917 TTAGTCTTGA
78171927 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
78171957 CATATCATTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* * *
78171988 CAAATCACTAGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
78172019 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
78172050 CATATCATTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
78172073 ACTGTAAATG
Statistics
Matches: 106, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 5 0.05
31 101 0.95
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:78172143 original size:42 final size:42
Alignment explanation
Indices: 78172096--78172187 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
78172086 TGGCCCTTAG
* **
78172096 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGGATGTATGCAA
*
78172138 GCCCATTTCAATATCACATGAAATACCAATGTATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGGATGTATGCAA
78172180 GCCCATTT
1 GCCCATTT
78172188 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGGATGTATGCAA
Found at i:78173224 original size:27 final size:27
Alignment explanation
Indices: 78173162--78173239 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
78173152 GGGCATATTC
78173162 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
78173189 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
78173216 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
78173240 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:78173452 original size:27 final size:27
Alignment explanation
Indices: 78173286--78173797 Score: 212
Period size: 27 Copynumber: 18.9 Consensus size: 27
78173276 CTACAAACCA
* * * *
78173286 AGGGTATTTCAGTAATTTTGTAAACCA
1 AGGGTATTTCGGTAATTTTATAAATCG
* ** * **
78173313 ATGGTATTTCTATAATTTTTAGAAAGTTA
1 AGGGTATTTCGGTAA-TTTTATAAA-TCG
** * *
78173342 AGGGTATTTCTATAACTTTGTAAATC-
1 AGGGTATTTCGGTAATTTTATAAATCG
* * * *
78173368 AGGGGTATTTTGATAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTATAAATCG
* *
78173395 AGGGGTATTTTGGTAATTTTCCT-AATCG
1 A-GGGTATTTCGGTAATTTT-ATAAATCG
* * *
78173423 AGGGTATTTTGGTAATTTTGTAAATTG
1 AGGGTATTTCGGTAATTTTATAAATCG
*** * *
78173450 AGGGTAAAACGGTAATTCTATAAATTG
1 AGGGTATTTCGGTAATTTTATAAATCG
** * *
78173477 AGGGTAAAAT-GATAATTTTGTAAATCG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
* *** *
78173504 TGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
*** * *
78173531 AGGGTAAAACGGTAATTCTATAAATTG
1 AGGGTATTTCGGTAATTTTATAAATCG
* *** *
78173558 AGGCTAAAACGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
*** *
78173585 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
78173612 AGGGTACTTT-AGTAATTTTACAAATTG
1 AGGGTA-TTTCGGTAATTTTATAAATCG
* ** * *
78173639 AGGGCATTTTAGTAATTTTA-CAATTG
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
78173665 ATGGTATTTCGATAATTTTATAAACCG
1 AGGGTATTTCGGTAATTTTATAAATCG
* ** *
78173692 GGGGTACTTT-GGTAATTTTGCAAGTCG
1 AGGGTA-TTTCGGTAATTTTATAAATCG
* ** *
78173719 AAGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
** * *
78173746 AGGGTATTTCAATAATTTTACAAA-CTA
1 AGGGTATTTCGGTAATTTTATAAATC-G
78173773 AGGGTATTTCGGTAATTTTAGTAAA
1 AGGGTATTTCGGTAATTTTA-TAAA
78173798 CTAAAGTATT
Statistics
Matches: 386, Mismatches: 83, Indels: 31
0.77 0.17 0.06
Matches are distributed among these distances:
26 33 0.09
27 314 0.81
28 24 0.06
29 15 0.04
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTATAAATCG
Found at i:78173464 original size:54 final size:54
Alignment explanation
Indices: 78173418--78173617 Score: 247
Period size: 54 Copynumber: 3.7 Consensus size: 54
78173408 TAATTTTCCT
*** * *
78173418 AATCGAGGGTATTTTGGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTAAATTGAGGGTAAAACGGTAATTTTGTA
* * * *
78173472 AATTGAGGGTAAAATGATAATTTTGTAAATCGTGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTAAATTGAGGGTAAAACGGTAATTTTGTA
* * * *
78173526 AATCGAGGGTAAAACGGTAATTCTATAAATTGAGGCTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTAAATTGAGGGTAAAACGGTAATTTTGTA
* * * *
78173580 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTGTAAATTGAGGGTA
78173618 CTTTAGTAAT
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 127 1.00
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (54 bp):
AATCGAGGGTAAAATGGTAATTTTGTAAATTGAGGGTAAAACGGTAATTTTGTA
Found at i:78173482 original size:81 final size:81
Alignment explanation
Indices: 78173433--78173617 Score: 289
Period size: 81 Copynumber: 2.3 Consensus size: 81
78173423 AGGGTATTTT
* *
78173433 GGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGATAATTTTGT
1 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGATAATTTTCT
*
78173498 AAATCGTGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * * *
78173514 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGCTAAAACGGTAATTTTGT
1 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGATAATTTTCT
78173579 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* *
78173595 GGTAATTCTATAAATCGAGGGTA
1 GGTAATTTTGTAAATCGAGGGTA
78173618 CTTTAGTAAT
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 97 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (81 bp):
GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGATAATTTTCT
AAATCGAGGGTAAAAC
Found at i:78173657 original size:81 final size:80
Alignment explanation
Indices: 78173433--78173641 Score: 247
Period size: 81 Copynumber: 2.6 Consensus size: 80
78173423 AGGGTATTTT
* * * * * * *
78173433 GGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGATAATTTTGT
1 GGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTACAAATTGAGGCTAAAACG-TAATTTTGT
*
78173498 AAATCGTGGGTAAAAC
65 AAATCGAGGGTAAAAC
* * * *
78173514 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGCTAAAACGGTAATTTTGT
1 GGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTACAAATTGAGGCTAAAAC-GTAATTTTGT
78173579 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
**** *
78173595 GGTAATTCTATAAATCGAGGGTACTTTAGTAATTTTACAAATTGAGG
1 GGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTACAAATTGAGG
78173642 GCATTTTAGT
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 113 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.33
Consensus pattern (80 bp):
GGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTACAAATTGAGGCTAAAACGTAATTTTGTA
AATCGAGGGTAAAAC
Found at i:78173707 original size:80 final size:81
Alignment explanation
Indices: 78173597--78173792 Score: 216
Period size: 80 Copynumber: 2.4 Consensus size: 81
78173587 GGTAAAACGG
* * * * * * *
78173597 TAATTCTATAAATCGAGGGTACTTTAGTAATTTTACAAATTGAGGGCATTTTAGTAATTTTAC-A
1 TAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAATAATTTTACAA
* * *
78173661 ATTGATGGTATTTCGA
66 ATCGAGGGTATTTCAA
* * * *
78173677 TAATTTTATAAACCGGGGGTACTTTGGTAATTTTGCAAGTCGAAGGTATTTCAATAATTTTACAA
1 TAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAATAATTTTACAA
78173742 ATCGAGGGTATTTCAA
66 ATCGAGGGTATTTCAA
* **
78173758 TAATTTTACAAACTAAGGGTA-TTTCGGTAATTTTA
1 TAATTTTATAAACCGAGGGTACTTT-GGTAATTTTA
78173793 GTAAACTAAA
Statistics
Matches: 95, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
80 55 0.58
81 40 0.42
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.40
Consensus pattern (81 bp):
TAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAATAATTTTACAA
ATCGAGGGTATTTCAA
Found at i:78173806 original size:27 final size:27
Alignment explanation
Indices: 78173722--78173807 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
78173712 CAAGTCGAAG
* *
78173722 GTATTTCAATAATTTTACAAA-TCGAGG
1 GTATTTCAATAATTTTACAAACT-AAGA
*
78173749 GTATTTCAATAATTTTACAAACTAAGG
1 GTATTTCAATAATTTTACAAACTAAGA
** *
78173776 GTATTTCGGTAATTTTAGTAAACTAA-A
1 GTATTTCAATAATTTTA-CAAACTAAGA
78173803 GTATT
1 GTATT
78173808 CTAAACAGGG
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
27 44 0.85
28 8 0.15
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (27 bp):
GTATTTCAATAATTTTACAAACTAAGA
Found at i:78179540 original size:13 final size:13
Alignment explanation
Indices: 78179522--78179547 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78179512 TGAAGCAATC
78179522 GCACACGGGCATG
1 GCACACGGGCATG
78179535 GCACACGGGCATG
1 GCACACGGGCATG
78179548 TCCCTGTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.38, T:0.08
Consensus pattern (13 bp):
GCACACGGGCATG
Found at i:78185836 original size:25 final size:26
Alignment explanation
Indices: 78185789--78185846 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
78185779 CACTTTTATC
78185789 TTTA-TTTATCTTCTTTAAGTACT-T
1 TTTATTTTATCTTCTTTAAGTACTAT
*
78185813 TTTATTTTATTTTCATTTAA-TACTAT
1 TTTATTTTATCTTC-TTTAAGTACTAT
*
78185839 TTCATTTT
1 TTTATTTT
78185847 TAGGTTTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.14
25 12 0.41
26 13 0.45
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (26 bp):
TTTATTTTATCTTCTTTAAGTACTAT
Found at i:78188315 original size:14 final size:13
Alignment explanation
Indices: 78188295--78188326 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
78188285 AATATTTGAC
78188295 TTGTTCTTAATTA
1 TTGTTCTTAATTA
78188308 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
78188322 TTGTT
1 TTGTT
78188327 TCAATATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:78189600 original size:43 final size:43
Alignment explanation
Indices: 78189552--78189709 Score: 128
Period size: 43 Copynumber: 3.7 Consensus size: 43
78189542 ATCTCGTACA
*
78189552 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAAATATCG
* *
78189595 ATGCC-ACTGTCCCAGATA-G-GGTATTACACGAAATCAAATA-CG
1 ATGCCAAC-GTCCCA-A-ACGTGGTCTTACACGTAATCAAATATCG
* ** * * * * *
78189637 ATTCCAATATCCTAGACATGGTCTTACACGTAAATCATAA-GTCA
1 ATGCCAACGTCCCAAACGTGGTCTTACACGT-AATCA-AATATCG
*
78189681 ATGCCAACGTCCCAGACGTGGTCTTACAC
1 ATGCCAACGTCCCAAACGTGGTCTTACAC
78189710 AATAACACAT
Statistics
Matches: 88, Mismatches: 18, Indels: 17
0.72 0.15 0.14
Matches are distributed among these distances:
40 1 0.01
42 22 0.25
43 35 0.40
44 29 0.33
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAAATATCG
Found at i:78193392 original size:43 final size:43
Alignment explanation
Indices: 78193329--78193486 Score: 174
Period size: 43 Copynumber: 3.7 Consensus size: 43
78193319 CATTTGGGCA
* * *
78193329 TCGAGCCTAGCAAGCTATAATACCGGTCAAATAATATCAGGCC
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCC
* * *
78193372 TTGAGCCTAGCAGGTTATAATGCCGGTGAAATAATATCGGGCC
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCC
* * * ** *
78193415 TCGAGCTTAGCAGGCTATAGTGCCTGTGAAATAATATTGGGCT
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCC
* * *
78193458 TAGAGCGTAGCAGGC-AAAATGCCGGTGAA
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAA
78193487 TGAATTCAGA
Statistics
Matches: 97, Mismatches: 18, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
42 11 0.11
43 86 0.89
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (43 bp):
TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCC
Found at i:78194040 original size:16 final size:18
Alignment explanation
Indices: 78194009--78194041 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
78193999 AACTCATCAC
78194009 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
78194027 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
78194042 AATTCGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:78201068 original size:43 final size:43
Alignment explanation
Indices: 78201005--78201162 Score: 183
Period size: 43 Copynumber: 3.7 Consensus size: 43
78200995 CATTTGGGCA
* * *
78201005 TCGAGCCTAGCAAGCTATAATACCGGTCAAATAATATCAGGCC
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCC
* * *
78201048 TTGAGCCTAGCAGGTTATAATGCCGGTGAAATAATATCGGGCC
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCC
* * ** *
78201091 TCGAGCCTAGCAGGCTATAGTGCCTGTGAAATAATATTGGGCT
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCC
* * *
78201134 TAGAGCGTAGCAGGC-AAAATGCCGGTGAA
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAA
78201163 TGAATTCAGA
Statistics
Matches: 98, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 11 0.11
43 87 0.89
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (43 bp):
TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCC
Found at i:78201756 original size:16 final size:18
Alignment explanation
Indices: 78201725--78201757 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
78201715 AACTCGTCAC
78201725 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
78201743 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
78201758 AATTCGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:78206011 original size:43 final size:43
Alignment explanation
Indices: 78205894--78206016 Score: 183
Period size: 43 Copynumber: 2.9 Consensus size: 43
78205884 ATGGTACCAT
* ** *
78205894 TCGGGCATCGAGCCTAGCAGGCTATAATATCGATGAAATAATA
1 TCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
78205937 TCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
1 TCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
* * *
78205980 TCGGGCCTCGATCCTAGTAGGCTATAGTGCCGGTGAA
1 TCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAA
78206017 TAAGAGTTAT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.23
Consensus pattern (43 bp):
TCGGGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
Found at i:78206381 original size:16 final size:18
Alignment explanation
Indices: 78206350--78206382 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
78206340 AACTCATCAC
78206350 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
78206368 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
78206383 AATTCATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:78210085 original size:40 final size:40
Alignment explanation
Indices: 78210003--78210220 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
78209993 AAGCCAAGTA
* * * *
78210003 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
* *
78210041 CCTTCGGGACATAGCCCGGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
78210081 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
78210121 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
78210161 CCTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CAC-AAATG
78210202 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78210221 TTATCATCCA
Statistics
Matches: 163, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
38 12 0.07
39 17 0.10
40 110 0.67
41 24 0.15
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:78218286 original size:41 final size:40
Alignment explanation
Indices: 78218121--78218298 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 40
78218111 AAGCCAAGTA
* * * *
78218121 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACCCGCACAAATG
* * * *
78218159 CCTTCGGGACATAGCCCGGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
78218199 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
* * *
78218239 CCTTCGGAACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAAC--CCGCACAAATG
78218280 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78218299 TTATCATCCA
Statistics
Matches: 121, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
38 12 0.10
39 17 0.14
40 65 0.54
41 23 0.19
42 4 0.03
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
Found at i:78227447 original size:20 final size:20
Alignment explanation
Indices: 78227424--78227461 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
78227414 CACATCCAAA
* *
78227424 TACAAAATTTTTAAAATCTT
1 TACAAAATATTGAAAATCTT
78227444 TACAAAATATTGAAAATC
1 TACAAAATATTGAAAATC
78227462 GCGAATAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.37
Consensus pattern (20 bp):
TACAAAATATTGAAAATCTT
Found at i:78233070 original size:55 final size:54
Alignment explanation
Indices: 78232919--78233097 Score: 216
Period size: 54 Copynumber: 3.3 Consensus size: 54
78232909 GTAAATTGTA
* ** *
78232919 TAGCACTAAGTGTGCGATTTGACCATGTTGCACTAAGTGTGCGAAATGAAAATG
1 TAGCACTAAGTGTGCGATTTGACCATGTGGCACTAAGTGTGCGAGTTGAATATG
* * * *
78232973 -ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTACG
1 TA-GCACTAAGTGTGCGATTTGACCATGTGGCACTAAGTGTGCGAGTTGAATATG
** * *
78233027 TAGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGA-TTTGACCATGTGGCACTAAGTGTGCGAGTTGAATATG
*
78233082 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
78233098 GACTTAATAT
Statistics
Matches: 106, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 59 0.56
55 46 0.43
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (54 bp):
TAGCACTAAGTGTGCGATTTGACCATGTGGCACTAAGTGTGCGAGTTGAATATG
Found at i:78233087 original size:27 final size:27
Alignment explanation
Indices: 78232919--78233097 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
78232909 GTAAATTGTA
* *
78232919 TAGCACTAAGTGTGCGATTTGACCATG
1 TAGCACTAAGTGTGCGAGTTGACTATG
* ** **
78232946 TTGCACTAAGTGTGCGAAATGAAAATG
1 TAGCACTAAGTGTGCGAGTTGACTATG
* *
78232973 -ATGCACTAAGTGTGCGAATTGACCATG
1 TA-GCACTAAGTGTGCGAGTTGACTATG
** *
78233000 CGGCACTAAGTGTGCGAGTTGACTACG
1 TAGCACTAAGTGTGCGAGTTGACTATG
*
78233027 TAGCACTAAGTGTGCGAGTTTGATTATG
1 TAGCACTAAGTGTGCGAG-TTGACTATG
* * *
78233055 TGGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGAGTTGACTATG
*
78233082 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
78233098 GACTTAATAT
Statistics
Matches: 128, Mismatches: 21, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGAGTTGACTATG
Found at i:78236858 original size:27 final size:27
Alignment explanation
Indices: 78236817--78236996 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
78236807 GTAAATTGTA
* *
78236817 TAGCACTAAAGTGTGCGATTTGACCATG
1 TAGCACT-AAGTGTGCGAATTGACTATG
* * **
78236845 TTGCACTAAGTGTGCGAAATGAAAATG
1 TAGCACTAAGTGTGCGAATTGACTATG
*
78236872 -ATGCACTAAGTGTGCGAATTGACCATG
1 TA-GCACTAAGTGTGCGAATTGACTATG
** * *
78236899 CGGCACTAAGTGTGCGAGTTGACTACG
1 TAGCACTAAGTGTGCGAATTGACTATG
* *
78236926 TAGCACTAAGTGTGCGAGTTTGATTATG
1 TAGCACTAAGTGTGCGA-ATTGACTATG
* * * *
78236954 TGGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGAATTGACTATG
78236981 TAGCACTAAGTGTGCG
1 TAGCACTAAGTGTGCG
78236997 GACTTAATAT
Statistics
Matches: 127, Mismatches: 22, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
27 98 0.77
28 29 0.23
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGAATTGACTATG
Found at i:78236885 original size:54 final size:55
Alignment explanation
Indices: 78236816--78236996 Score: 224
Period size: 54 Copynumber: 3.3 Consensus size: 55
78236806 AGTAAATTGT
* ** *
78236816 ATAGCACTAAAGTGTGCGATTTGACCATGTTGCACTAAGTGTGCGAAATGAAAATG
1 ATAGCACT-AAGTGTGCGATTTGACCATGTGGCACTAAGTGTGCGAGTTGAATATG
* * * *
78236872 AT-GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTACG
1 ATAGCACTAAGTGTGCGATTTGACCATGTGGCACTAAGTGTGCGAGTTGAATATG
** *
78236926 -TAGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTAT-
1 ATAGCACTAAGTGTGCGA-TTTGACCATGTGGCACTAAGTGTGCGAGTTGAATATG
78236980 ATAGCACTAAGTGTGCG
1 ATAGCACTAAGTGTGCG
78236997 GACTTAATAT
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 54 0.50
55 51 0.47
56 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (55 bp):
ATAGCACTAAGTGTGCGATTTGACCATGTGGCACTAAGTGTGCGAGTTGAATATG
Found at i:78239676 original size:47 final size:47
Alignment explanation
Indices: 78239594--78239762 Score: 288
Period size: 47 Copynumber: 3.6 Consensus size: 47
78239584 TTAGGATTCT
* *
78239594 ATGTGATGGATGTGAACA-TG-ATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
78239640 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78239687 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78239734 ATGTGATGAATGTGAAAGTGTATATATGT
1 ATGTGATGAATGTGAAAGTGTATATATGT
78239763 ATGAATGTGA
Statistics
Matches: 117, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
45 1 0.01
46 17 0.15
47 99 0.85
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:78239767 original size:24 final size:25
Alignment explanation
Indices: 78239734--78240024 Score: 112
Period size: 24 Copynumber: 12.3 Consensus size: 25
78239724 CTAATGGCCG
78239734 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
78239759 ATGT-ATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
78239783 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
78239805 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
78239830 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
78239852 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
78239877 ATGTTGAT-AAGGCCTAA-TG-GCCG
1 ATG-TGATGAATGTGAAAGTGTATAT
78239900 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ***
78239925 ATGTGAT-AAGGCCTAA-TG--CCG
1 ATGTGATGAATGTGAAAGTGTATAT
78239946 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* ** ****
78239971 ATGTGAT-AAGGTCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
78239993 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
78240018 ATGTGAT
1 ATGTGAT
78240025 AAGGCCTAAT
Statistics
Matches: 172, Mismatches: 76, Indels: 36
0.61 0.27 0.13
Matches are distributed among these distances:
21 7 0.04
22 30 0.17
23 34 0.20
24 55 0.32
25 42 0.24
26 4 0.02
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:78239772 original size:71 final size:72
Alignment explanation
Indices: 78239687--78239836 Score: 293
Period size: 71 Copynumber: 2.1 Consensus size: 72
78239677 CTAATAGCCG
78239687 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
78239752 TGTATAT
66 TGTATAT
78239759 ATGT-ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
78239823 TGTATAT
66 TGTATAT
78239830 ATGTGAT
1 ATGTGAT
78239837 AAGGCCTAAT
Statistics
Matches: 77, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
71 71 0.92
72 6 0.08
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (72 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATAT
Found at i:78239816 original size:47 final size:47
Alignment explanation
Indices: 78239759--78240215 Score: 801
Period size: 47 Copynumber: 9.7 Consensus size: 47
78239749 AAGTGTATAT
78239759 ATGT-ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78239805 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78239852 ATGTGATGAATGTGAAAGTGTATATATGTTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATG-TGATAAGGCCTAATGGCCG
78239900 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
78239946 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
78239993 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78240040 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78240087 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
78240134 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
78240181 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
78240216 TCCCGAAGGG
Statistics
Matches: 394, Mismatches: 14, Indels: 5
0.95 0.03 0.01
Matches are distributed among these distances:
46 49 0.12
47 298 0.76
48 47 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:78240422 original size:36 final size:36
Alignment explanation
Indices: 78240333--78240444 Score: 165
Period size: 34 Copynumber: 3.1 Consensus size: 36
78240323 CTGAGCTCTA
78240333 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGT
78240369 -AGA-CCGATGACTACGTGTGGGGATTTTGTCCGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGT
* * * *
78240403 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCC-GGT
78240440 AAGAC
1 AAGAC
78240445 TTCGTAATAA
Statistics
Matches: 69, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
34 31 0.45
35 6 0.09
36 24 0.35
37 8 0.12
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (36 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGT
Found at i:78242738 original size:27 final size:27
Alignment explanation
Indices: 78242707--78242884 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78242697 TAAATTGTAC
78242707 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
78242734 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78242760 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
78242788 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
78242816 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78242843 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78242870 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78242885 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78242821 original size:82 final size:81
Alignment explanation
Indices: 78242708--78242863 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78242698 AAATTGTACA
* *
78242708 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
78242772 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
78242789 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
78242854 TGCGAGTTGA
65 TGCGAATTGA
78242864 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78242875 original size:82 final size:81
Alignment explanation
Indices: 78242704--78242884 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
78242694 GATTAAATTG
* *
78242704 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
78242769 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
78242785 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
78242849 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
78242867 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78242885 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:78244904 original size:43 final size:43
Alignment explanation
Indices: 78244856--78244958 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
78244846 TTGGTTTTCA
78244856 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
78244899 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
78244942 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
78244959 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:78244975 original size:29 final size:29
Alignment explanation
Indices: 78244940--78245013 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
78244930 GTTGTGAGAT
* *
78244940 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
78244969 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
78244998 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78245014 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:78245411 original size:40 final size:40
Alignment explanation
Indices: 78245362--78245564 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 40
78245352 TAAGTGACCA
* *
78245362 TATCAGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
78245402 TATCCGGACTAAGTTCCGAAGAGAATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
78245442 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*** * * * *
78245482 TATCCGTG-CTAAACCCCAAAGAGCATTCGTGCTGGTGTTA
1 TATCCG-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * * * * *
78245522 TATCCGGGCTAGGTCCCGAATAGCAATCATGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
78245562 TAT
1 TAT
78245565 ATTCGGGCCT
Statistics
Matches: 140, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 138 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:78248052 original size:47 final size:47
Alignment explanation
Indices: 78248001--78248554 Score: 948
Period size: 47 Copynumber: 11.7 Consensus size: 47
78247991 TTAGGATTCT
* * * *
78248001 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
78248048 ATGTGATGAATGTGAAAGTGTATATTTGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78248095 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78248142 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78248189 ATGTGATGAATGTGAAAGTGTATATATTTGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATA--TGTGATAAGGCCTAATGGCCG
78248238 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78248285 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78248332 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
78248379 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78248426 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
78248473 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
78248520 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
78248555 TCCCGAAGGG
Statistics
Matches: 486, Mismatches: 18, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 438 0.90
49 47 0.10
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:78248723 original size:37 final size:37
Alignment explanation
Indices: 78248673--78248788 Score: 187
Period size: 37 Copynumber: 3.1 Consensus size: 37
78248663 CCGAGCTCTA
*
78248673 AAGACCTGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
78248710 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
78248747 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
78248784 AAGAC
1 AAGAC
78248789 TTCGTAATAA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:78250155 original size:30 final size:30
Alignment explanation
Indices: 78250120--78250176 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
78250110 TTTACGAGCC
*
78250120 TAGGGGTAAAAA-TGTAATTTTGACAAAGTT
1 TAGGGG-AAAAATTATAATTTTGACAAAGTT
*
78250150 TAGGGGAAAAATTATAATTTTGCCAAA
1 TAGGGGAAAAATTATAATTTTGACAAA
78250177 ATATGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (30 bp):
TAGGGGAAAAATTATAATTTTGACAAAGTT
Found at i:78261837 original size:29 final size:29
Alignment explanation
Indices: 78261782--78261852 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 29
78261772 CATTAAGCGC
* **
78261782 AATCATATTCATATGGCCCGTTTGGCCCA
1 AATCACATTCATATGGCCCGTCAGGCCCA
* *
78261811 AATCACATTTATATGGCCTGTCAGGCCC-
1 AATCACATTCATATGGCCCGTCAGGCCCA
* *
78261839 AGTCAAATTCATAT
1 AATCACATTCATAT
78261853 TCATGCTCAC
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 11 0.32
29 23 0.68
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.31
Consensus pattern (29 bp):
AATCACATTCATATGGCCCGTCAGGCCCA
Found at i:78266011 original size:42 final size:43
Alignment explanation
Indices: 78265955--78266065 Score: 140
Period size: 42 Copynumber: 2.6 Consensus size: 43
78265945 GATTTGCGTA
*
78265955 TAAGACCATGTCTGGGACA-TCGGCATCGTATATGAG-TT-CGTG
1 TAAGACCATGTCTGGGACAGT-GGCATCG-ATATGAGATTACATG
* *
78265997 TAAGACCTTGTCTGGGACAGTGGCATCGATATGTGATTACATG
1 TAAGACCATGTCTGGGACAGTGGCATCGATATGAGATTACATG
78266040 TAAGACCATGTCTGGGAC-GTTGGCAT
1 TAAGACCATGTCTGGGACAG-TGGCAT
78266066 TGTACGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
41 6 0.10
42 28 0.46
43 27 0.44
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAGTGGCATCGATATGAGATTACATG
Found at i:78266056 original size:43 final size:44
Alignment explanation
Indices: 78265896--78266065 Score: 181
Period size: 43 Copynumber: 4.0 Consensus size: 44
78265886 TAGGATTCCA
* * * *
78265896 ATATGTGATTTCGTGTAAGACCACGTCTGGGA-TGTTAGCATCG
1 ATATGTGAGTTCGTGTAAGACCATGTCTGGGACAGTTGGCATCG
* * * *
78265939 ATTTGTGATTTGCGTATAAGACCATGTCTGGGACA-TCGGCATCG
1 ATATGTGAGTT-CGTGTAAGACCATGTCTGGGACAGTTGGCATCG
* *
78265983 -TATATGAGTTCGTGTAAGACCTTGTCTGGGACAG-TGGCATCG
1 ATATGTGAGTTCGTGTAAGACCATGTCTGGGACAGTTGGCATCG
*
78266025 ATATGTGA-TTACATGTAAGACCATGTCTGGGAC-GTTGGCAT
1 ATATGTGAGTT-CGTGTAAGACCATGTCTGGGACAGTTGGCAT
78266066 TGTACGAGCT
Statistics
Matches: 106, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
42 31 0.29
43 49 0.46
44 26 0.25
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (44 bp):
ATATGTGAGTTCGTGTAAGACCATGTCTGGGACAGTTGGCATCG
Found at i:78266286 original size:14 final size:12
Alignment explanation
Indices: 78266252--78266282 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
78266242 AAGTGAGAGT
78266252 TAAATATGTTTA
1 TAAATATGTTTA
78266264 TAAATATGTTTA
1 TAAATATGTTTA
78266276 TAAATAT
1 TAAATAT
78266283 ATGTGTATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (12 bp):
TAAATATGTTTA
Found at i:78266871 original size:19 final size:19
Alignment explanation
Indices: 78266847--78266885 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
78266837 GGTAAATTTG
78266847 ATATATGTA-GTTGATGAAT
1 ATATATGTAGGTT-ATGAAT
*
78266866 ATATATTTAGGTTATGAAT
1 ATATATGTAGGTTATGAAT
78266885 A
1 A
78266886 ATTAATGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (19 bp):
ATATATGTAGGTTATGAAT
Found at i:78273347 original size:43 final size:42
Alignment explanation
Indices: 78273257--78273370 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 42
78273247 ACACATATTG
* * * * * *
78273257 ATGCCACTGTCCCAAATAGGGTCTTACACGAAATCGATTAATG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATC-ATCAATA
78273300 ATGCCAATGTCCCAGACATGGTCTTACACGAAATC-TCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATCAAT--A
78273343 ATGCCAATGTCCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
78273371 TGTAACCACA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
41 4 0.06
43 59 0.94
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATCAATA
Found at i:78278128 original size:44 final size:45
Alignment explanation
Indices: 78278050--78278135 Score: 138
Period size: 44 Copynumber: 1.9 Consensus size: 45
78278040 CAAAACATGT
78278050 GTCACATATATCACAAACTCAAACCACAACTCAATAAGTTCAGAG
1 GTCACATATATCACAAACTCAAACCACAACTCAATAAGTTCAGAG
* * *
78278095 GTCACATATATCA-GAATTCAAACCACAAGTCAATAAGTTCA
1 GTCACATATATCACAAACTCAAACCACAACTCAATAAGTTCA
78278136 AATTACATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 25 0.66
45 13 0.34
ACGTcount: A:0.44, C:0.24, G:0.09, T:0.22
Consensus pattern (45 bp):
GTCACATATATCACAAACTCAAACCACAACTCAATAAGTTCAGAG
Found at i:78282202 original size:27 final size:27
Alignment explanation
Indices: 78282164--78282219 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
78282154 CGGCAATGAT
*
78282164 AAAGACAATTTAACAAACCTTAAATTC
1 AAAGAAAATTTAACAAACCTTAAATTC
78282191 AAAGAAAATTTAACAAACCTTAAATTC
1 AAAGAAAATTTAACAAACCTTAAATTC
78282218 AA
1 AA
78282220 CTTATAACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.55, C:0.16, G:0.04, T:0.25
Consensus pattern (27 bp):
AAAGAAAATTTAACAAACCTTAAATTC
Found at i:78313696 original size:8 final size:8
Alignment explanation
Indices: 78313683--78313709 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
78313673 CTAGATCAGC
78313683 AAAAGCCG
1 AAAAGCCG
78313691 AAAAGCCG
1 AAAAGCCG
78313699 AAAAGCCG
1 AAAAGCCG
78313707 AAA
1 AAA
78313710 TGCCAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.56, C:0.22, G:0.22, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:78313718 original size:16 final size:16
Alignment explanation
Indices: 78313683--78313718 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
78313673 CTAGATCAGC
*
78313683 AAAAGCCGAAAAGCCG
1 AAAAGCCGAAAAGCCA
*
78313699 AAAAGCCGAAATGCCA
1 AAAAGCCGAAAAGCCA
78313715 AAAA
1 AAAA
78313719 ATCGGTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.19, T:0.03
Consensus pattern (16 bp):
AAAAGCCGAAAAGCCA
Found at i:78314482 original size:25 final size:25
Alignment explanation
Indices: 78314448--78314495 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
78314438 AACTCACCCC
78314448 TTTCTCTTCCATCCTTGTAGGTGAG
1 TTTCTCTTCCATCCTTGTAGGTGAG
*
78314473 TTTCTCTTCCATCCTTGTTGGTG
1 TTTCTCTTCCATCCTTGTAGGTG
78314496 GGCTTGGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.08, C:0.25, G:0.19, T:0.48
Consensus pattern (25 bp):
TTTCTCTTCCATCCTTGTAGGTGAG
Found at i:78318325 original size:31 final size:31
Alignment explanation
Indices: 78318284--78318347 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
78318274 CCTTTTCATA
*
78318284 TTTCATATTTCATAACACTAGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
** *
78318315 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
78318346 TT
1 TT
78318348 ACTGTAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTAGGCCGAAGCCT
Found at i:78318620 original size:23 final size:24
Alignment explanation
Indices: 78318555--78318706 Score: 229
Period size: 23 Copynumber: 6.4 Consensus size: 24
78318545 CTGGAGGCCT
* * *
78318555 AGCCTCTTTTAATAACTAGGGCAAA
1 AGCC-CTTTTGATAACTGGGGCATA
*
78318580 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
78318604 AGCCC-TTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
78318627 AGCCCTTTTGATAACT-GGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
78318650 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
*
78318674 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
78318697 AGCCCTTTTG
1 AGCCCTTTTG
78318707 CACTTCCTCC
Statistics
Matches: 119, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
23 67 0.56
24 48 0.40
25 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAACTGGGGCATA
Found at i:78318654 original size:70 final size:71
Alignment explanation
Indices: 78318555--78318706 Score: 252
Period size: 70 Copynumber: 2.1 Consensus size: 71
78318545 CTGGAGGCCT
* *
78318555 AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTGATAACTG
1 AGCC-CTTTTGATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
78318620 GGGCATA
65 GGGCATA
* *
78318627 AGCCCTTTTGATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTGATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
78318691 GGCATA
66 GGCATA
78318697 AGCCCTTTTG
1 AGCCCTTTTG
78318707 CACTTCCTCC
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
70 61 0.80
71 11 0.14
72 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
AGCCCTTTTGATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
GGCATA
Found at i:78318705 original size:47 final size:48
Alignment explanation
Indices: 78318555--78318706 Score: 238
Period size: 47 Copynumber: 3.2 Consensus size: 48
78318545 CTGGAGGCCT
* * *
78318555 AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
78318604 AGCCC-TTTGATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCATA
1 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
78318650 AGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
78318697 AGCCCTTTTG
1 AGCCCTTTTG
78318707 CACTTCCTCC
Statistics
Matches: 96, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
46 21 0.22
47 70 0.73
48 1 0.01
49 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:78318777 original size:9 final size:9
Alignment explanation
Indices: 78318763--78318819 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
78318753 ATCTCATGTG
78318763 CATATCATA
1 CATATCATA
*
78318772 CATATCATGTG
1 CATATCA--TA
78318783 CATATCATA
1 CATATCATA
* *
78318792 CATGTCATGTG
1 CATATCA--TA
78318803 CATATCATA
1 CATATCATA
78318812 CATATCAT
1 CATATCAT
78318820 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:78318779 original size:20 final size:20
Alignment explanation
Indices: 78318751--78318821 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
78318741 GCATTTATGA
*
78318751 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
78318771 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
78318791 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
78318811 ACATATCATGT
1 ACATATCATGT
78318822 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:78318786 original size:11 final size:11
Alignment explanation
Indices: 78318756--78318810 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
78318746 TATGAACATC
78318756 TCATGTGCATA
1 TCATGTGCATA
*
78318767 TCA--TACATA
1 TCATGTGCATA
78318776 TCATGTGCATA
1 TCATGTGCATA
* *
78318787 TCA--TACATG
1 TCATGTGCATA
78318796 TCATGTGCATA
1 TCATGTGCATA
78318807 TCAT
1 TCAT
78318811 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Done.