Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 24 of 343
Found at i:7989458 original size:37 final size:37
Alignment explanation
Indices: 7989407--7989481 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 37
7989397 TTCAGCTATG
* * * *
7989407 GTGAAATTGGATTAAATT-GCTTGAATTTGTATTTTT
1 GTGAAATAGGATTAAATTGGATTAAATGTGTATTTTT
7989443 GTGAAATAAGGATTAAATTGGATTAAATGTGTATTTTT
1 GTGAAAT-AGGATTAAATTGGATTAAATGTGTATTTTT
7989481 G
1 G
7989482 GATTAAATTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 7 0.21
37 10 0.30
38 16 0.48
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.45
Consensus pattern (37 bp):
GTGAAATAGGATTAAATTGGATTAAATGTGTATTTTT
Found at i:7992313 original size:21 final size:22
Alignment explanation
Indices: 7992283--7992331 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
7992273 GCAGCAGCAA
*
7992283 CATTTTGTTCATTTGTAACTTG
1 CATTTAGTTCATTTGTAACTTG
* * *
7992305 -ATTTAGTTCTTTTTTAATTTG
1 CATTTAGTTCATTTGTAACTTG
7992326 CATTTA
1 CATTTA
7992332 AAGTTGGTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.59
Consensus pattern (22 bp):
CATTTAGTTCATTTGTAACTTG
Found at i:7993930 original size:5 final size:6
Alignment explanation
Indices: 7993914--7993955 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
7993904 TACTTTAGCC
*
7993914 ATTTTT ATTTTT ATTTTT A-TTTT ATTTTT -TGTTTT ACTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT AT-TTTT ATTTTT A
7993956 ATTTACTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
5 6 0.19
6 26 0.81
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:7993936 original size:17 final size:18
Alignment explanation
Indices: 7993916--7993955 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
7993906 CTTTAGCCAT
7993916 TTTTATTTTTAT-TTTTA-
1 TTTTATTTTT-TGTTTTAC
7993933 TTTTATTTTTTGTTTTAC
1 TTTTATTTTTTGTTTTAC
7993951 TTTTA
1 TTTTA
7993956 ATTTACTAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.05
17 15 0.71
18 5 0.24
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.80
Consensus pattern (18 bp):
TTTTATTTTTTGTTTTAC
Found at i:7993940 original size:23 final size:23
Alignment explanation
Indices: 7993914--7993960 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7993904 TACTTTAGCC
* *
7993914 ATTTTTAT-TTTTATTTTTATTTT
1 ATTTTT-TGTTTTACTTTTAATTT
7993937 ATTTTTTGTTTTACTTTTAATTT
1 ATTTTTTGTTTTACTTTTAATTT
7993960 A
1 A
7993961 CTAACTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 20 0.95
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (23 bp):
ATTTTTTGTTTTACTTTTAATTT
Found at i:7997097 original size:15 final size:13
Alignment explanation
Indices: 7997054--7997090 Score: 56
Period size: 15 Copynumber: 2.7 Consensus size: 13
7997044 TTTTATTTTA
7997054 TTTTATTTTTAAT
1 TTTTATTTTTAAT
7997067 TGTTATATTTTTAAT
1 T-TT-TATTTTTAAT
7997082 TTTTATTTT
1 TTTTATTTT
7997091 ACTAATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.32
14 4 0.18
15 11 0.50
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTTATTTTTAAT
Found at i:7997149 original size:16 final size:15
Alignment explanation
Indices: 7997129--7997182 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 15
7997119 TATACTTATA
7997129 TATTTTTTTATATTT
1 TATTTTTTTATATTT
*
7997144 TAATTTTTATATACTTT
1 T-ATTTTTTTATA-TTT
*
7997161 TATTATTTTTATTTTT
1 TATT-TTTTTATATTT
7997177 CTATTT
1 -TATTT
7997183 CTATTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 1 0.03
16 17 0.53
17 14 0.44
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (15 bp):
TATTTTTTTATATTT
Found at i:7997153 original size:26 final size:25
Alignment explanation
Indices: 7997108--7997176 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 25
7997098 AATTAATTAA
* **
7997108 TTTATTATTCTTATACTTATATA-T
1 TTTATTATTTTTATTTTTATATACT
*
7997132 TTTTTTATATTTTAATTTTTATATACT
1 TTTATTAT-TTTT-ATTTTTATATACT
7997159 TTTATTATTTTTATTTTT
1 TTTATTATTTTTATTTTT
7997177 CTATTTCTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
24 7 0.19
25 9 0.24
26 13 0.35
27 8 0.22
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTATTATTTTTATTTTTATATACT
Found at i:7997154 original size:24 final size:25
Alignment explanation
Indices: 7997108--7997182 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
7997098 AATTAATTAA
* *
7997108 TTTATTATTCTTATACTTATATATTTT
1 TTTATTATT-TTA-ATTTTTATATTTT
**
7997135 TTTA-TATTTTAATTTTTATATACT
1 TTTATTATTTTAATTTTTATATTTT
* *
7997159 TTTATTATTTTTATTTTTCTATTT
1 TTTATTATTTTAATTTTTATATTT
7997183 CTATTTTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
24 13 0.33
25 18 0.46
26 4 0.10
27 4 0.10
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTATTATTTTAATTTTTATATTTT
Found at i:7997192 original size:23 final size:22
Alignment explanation
Indices: 7997161--7997216 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
7997151 TATATACTTT
*
7997161 TATTATTTTTATTTTTCTATTTC-
1 TATTTTTTTTATTTTTC--TTTCG
7997184 TATTTTTTTCT-TTTTTCTTTCG
1 TATTTTTTT-TATTTTTCTTTCG
7997206 TATTTTTTTTA
1 TATTTTTTTTA
7997217 CTATTATCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
21 5 0.17
22 9 0.31
23 14 0.48
24 1 0.03
ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77
Consensus pattern (22 bp):
TATTTTTTTTATTTTTCTTTCG
Found at i:7997197 original size:22 final size:22
Alignment explanation
Indices: 7997161--7997214 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
7997151 TATATACTTT
7997161 TATTATTTTTATTTTTCTATTTC-
1 TATT-TTTTTATTTTT-TATTTCG
* *
7997184 TATTTTTTTCTTTTTTCTTTCG
1 TATTTTTTTATTTTTTATTTCG
7997206 TATTTTTTT
1 TATTTTTTT
7997215 TACTATTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 5 0.18
22 19 0.68
23 4 0.14
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.78
Consensus pattern (22 bp):
TATTTTTTTATTTTTTATTTCG
Found at i:8008918 original size:27 final size:27
Alignment explanation
Indices: 8008880--8008934 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
8008870 ATTCTCTTGG
* *
8008880 TTTTCAGTCATCTCTACGGTTGGGGGT
1 TTTTCAGCCATCTCTACGGTTGGAGGT
*
8008907 TTTTCAGCCATCTCTATGGTTGGAGGT
1 TTTTCAGCCATCTCTACGGTTGGAGGT
8008934 T
1 T
8008935 GAGTATCATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.13, C:0.18, G:0.27, T:0.42
Consensus pattern (27 bp):
TTTTCAGCCATCTCTACGGTTGGAGGT
Found at i:8009113 original size:3 final size:3
Alignment explanation
Indices: 8009100--8009134 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
8009090 AAAAGTAAAT
8009100 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
8009135 TAAATTGCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8019102 original size:68 final size:67
Alignment explanation
Indices: 8019030--8019179 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
8019020 CATCATGTGT
* * * *
8019030 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
8019092 ATGTAG
62 ATGTAG
** * *
8019098 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
8019163 AG
66 AG
8019165 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
8019180 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:8019135 original size:64 final size:64
Alignment explanation
Indices: 8019054--8019237 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
8019044 AGACATTATG
* *
8019054 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
8019118 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
8019183 AA
63 AA
* * ** *
8019185 ACTG--GCTAGGTCACATGGGTGGTACTAAATGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
8019238 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 20 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:8030555 original size:21 final size:22
Alignment explanation
Indices: 8030525--8030573 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
8030515 GCAGTAGCAA
*
8030525 CATTTTGTTCATTTGTAACTTG
1 CATTTAGTTCATTTGTAACTTG
* *
8030547 -ATTTAGTTCTTTTGTAATTTG
1 CATTTAGTTCATTTGTAACTTG
8030568 CATTTA
1 CATTTA
8030574 AAATTTGTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.20, C:0.10, G:0.12, T:0.57
Consensus pattern (22 bp):
CATTTAGTTCATTTGTAACTTG
Found at i:8031354 original size:23 final size:23
Alignment explanation
Indices: 8031324--8031369 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
8031314 AATACAGCAG
8031324 TTACAAACGTACGTATGTTGTCC
1 TTACAAACGTACGTATGTTGTCC
8031347 TTACAAACGTACGTATGTTGTCC
1 TTACAAACGTACGTATGTTGTCC
8031370 GGGTGAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (23 bp):
TTACAAACGTACGTATGTTGTCC
Found at i:8050102 original size:13 final size:13
Alignment explanation
Indices: 8050080--8050112 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8050070 AAGGGTTTGT
8050080 TTAT-TAAACTAA
1 TTATCTAAACTAA
8050092 TTATCTAAACTAA
1 TTATCTAAACTAA
*
8050105 TTAACTAA
1 TTATCTAA
8050113 TTTAATTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:8055052 original size:21 final size:20
Alignment explanation
Indices: 8055028--8055072 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
8055018 TCACTTCTCC
*
8055028 CACGCCCGTGTGTTATGGTA
1 CACGCCCGTGTATTATGGTA
* *
8055048 GCACGCTCGTGTATTATTGTA
1 -CACGCCCGTGTATTATGGTA
8055069 CACG
1 CACG
8055073 GCTGAACGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.18, C:0.24, G:0.27, T:0.31
Consensus pattern (20 bp):
CACGCCCGTGTATTATGGTA
Found at i:8057678 original size:13 final size:13
Alignment explanation
Indices: 8057656--8057688 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8057646 AAGGGTTTGT
8057656 TTAT-TAAACTAA
1 TTATCTAAACTAA
8057668 TTATCTAAACTAA
1 TTATCTAAACTAA
*
8057681 TTAACTAA
1 TTATCTAA
8057689 TTTAATTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:8058124 original size:14 final size:14
Alignment explanation
Indices: 8058105--8058140 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
8058095 ATACCTGGAA
8058105 TAAGAACACATAAT
1 TAAGAACACATAAT
*
8058119 TAAGAACGCATAAT
1 TAAGAACACATAAT
8058133 TAAGAACA
1 TAAGAACA
8058141 AATCAAGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.56, C:0.14, G:0.11, T:0.19
Consensus pattern (14 bp):
TAAGAACACATAAT
Found at i:8063933 original size:52 final size:52
Alignment explanation
Indices: 8063855--8063959 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
8063845 ACATAAAGAA
*
8063855 AACCCAAAACTCCTGAAGGGAAATTGAGGGGAGATCTTCAGTCTTGATGGTG
1 AACCCAAAACTCCTGAAGGGAAATTGAGGGGAGATCTTCAATCTTGATGGTG
8063907 AACCCAAAACTCCTGAAGGGAAATTGAGGGGAGATCTTCAATCTTGATGGTG
1 AACCCAAAACTCCTGAAGGGAAATTGAGGGGAGATCTTCAATCTTGATGGTG
8063959 A
1 A
8063960 CTTTGGCTTC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (52 bp):
AACCCAAAACTCCTGAAGGGAAATTGAGGGGAGATCTTCAATCTTGATGGTG
Found at i:8066995 original size:46 final size:46
Alignment explanation
Indices: 8066928--8067092 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 46
8066918 TTGGGCATCC
*
8066928 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCT
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCT
* * *
8066974 GAACTCATTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTCGGCATCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--CT
* * * * *
8067021 GAACTCGTTGAGTTGAGTCTGAGTTCACTTCTGGATACGAATG-TT
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCT
*
8067066 CGAACTCATTGAGTTGAGTCCAAGTTC
1 -GAACTCATTGAGTTGAGTCCGAGTTC
8067093 GTAAGATGTA
Statistics
Matches: 94, Mismatches: 15, Indels: 20
0.73 0.12 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 49 0.52
47 26 0.28
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (46 bp):
GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCT
Found at i:8067080 original size:93 final size:93
Alignment explanation
Indices: 8066921--8067146 Score: 337
Period size: 93 Copynumber: 2.4 Consensus size: 93
8066911 AGGATATTTG
* *
8066921 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAATGCCTGAACTCATTGAG
* * *
8066986 TTGAGTCCGAGTTCATGAGATGTAACTC
66 TTGAGTCCAAGTTCATAAGATGTAACTA
* *
8067014 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTCTGGATACGAATG-TTCGAACTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAATGCCT-GAACTCATTGA
*
8067078 GTTGAGTCCAAGTTCGTAAGATGTAACTA
65 GTTGAGTCCAAGTTCATAAGATGTAACTA
* * *
8067107 GGCATCCGAACTCATTGAGTTGAATTTGAGTTCACTTATG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATG
8067147 AACGCCCGAG
Statistics
Matches: 120, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
92 1 0.01
93 119 0.99
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAATGCCTGAACTCATTGAG
TTGAGTCCAAGTTCATAAGATGTAACTA
Found at i:8067129 original size:47 final size:45
Alignment explanation
Indices: 8066974--8067129 Score: 136
Period size: 47 Copynumber: 3.4 Consensus size: 45
8066964 GCGAATGCCT
*
8066974 GAACTCATTGAGTTGAGTCCGAGTTCATGAGATGTAACTCGGCATCC
1 GAACTCATTGAGTTGAGTCCGAGTTC-T-AGATGTAACTAGGCATCC
* * ** * * * * *
8067021 GAACTCGTTGAGTTGAGTCTGAGTTC-ACTTCTGGA-TACGAATGTTC
1 GAACTCATTGAGTTGAGTCCGAGTTCTAGATGT-AACTAGGCA--TCC
*
8067067 GAACTCATTGAGTTGAGTCCAAGTTCGTAAGATGTAACTAGGCATCC
1 GAACTCATTGAGTTGAGTCCGAGTTC-T-AGATGTAACTAGGCATCC
8067114 GAACTCATTGAGTTGA
1 GAACTCATTGAGTTGA
8067130 ATTTGAGTTC
Statistics
Matches: 82, Mismatches: 20, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
44 6 0.07
45 1 0.01
46 25 0.30
47 42 0.51
48 1 0.01
49 7 0.09
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (45 bp):
GAACTCATTGAGTTGAGTCCGAGTTCTAGATGTAACTAGGCATCC
Found at i:8072972 original size:46 final size:47
Alignment explanation
Indices: 8072920--8073141 Score: 185
Period size: 47 Copynumber: 4.7 Consensus size: 47
8072910 ATTTGGGCAT
*
8072920 CCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA-T-GC-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAGCA
* * *
8072966 CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGGCA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTA-GCA
* * * * *
8073012 TCCAAACTCGTTGAGATGAGTCCGAGTTCGTGA--GATGTAACTAGACA
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTAG-CA
* *
8073059 TCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC--GC-
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAGCA
*
8073106 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGG
8073142 GCGGGTTACA
Statistics
Matches: 149, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
45 4 0.03
46 60 0.40
47 67 0.45
48 3 0.02
49 1 0.01
50 4 0.03
51 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTAGCA
Found at i:8073033 original size:47 final size:47
Alignment explanation
Indices: 8072969--8073087 Score: 193
Period size: 47 Copynumber: 2.5 Consensus size: 47
8072959 CGAATGCCCG
*
8072969 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGACATCCA
* *
8073016 AACTCGTTGAGATGAGTCCGAGTTCGTGAGATGTAACTAGACATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGACATCCA
* *
8073063 AACTCATTGAGTTGAGTCTGAGTTC
1 AACTCGTTGAGTTGAGTCCGAGTTC
8073088 ACTTATGGAT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (47 bp):
AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGACATCCA
Found at i:8074184 original size:25 final size:25
Alignment explanation
Indices: 8074156--8074226 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 25
8074146 CCTCTTTTAA
8074156 AAACTGGGGCAAAGCCC-TTTCTGAT
1 AAACTGGGGCAAAGCCCTTTTC-GAT
*
8074181 AAACTGGGGCAAAGCCCTTTTCGGT
1 AAACTGGGGCAAAGCCCTTTTCGAT
* *
8074206 AAACTAGGGCATAGCCCTTTT
1 AAACTGGGGCAAAGCCCTTTT
8074227 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (25 bp):
AAACTGGGGCAAAGCCCTTTTCGAT
Found at i:8081786 original size:24 final size:25
Alignment explanation
Indices: 8081759--8081810 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
8081749 GCCTAGCCTC
8081759 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
8081783 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
8081808 TTT
1 TTT
8081811 CGGTAAACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:8081794 original size:25 final size:25
Alignment explanation
Indices: 8081766--8081825 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
8081756 CTCTTTTAAT
*
8081766 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
8081791 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
8081816 AACTAGGGCA
1 AACTGGGGCA
8081826 TAGTACTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:8081894 original size:10 final size:10
Alignment explanation
Indices: 8081881--8081915 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
8081871 ATATATGTAT
*
8081881 ATATCACGGC
1 ATATCATGGC
8081891 ATATCATGTGC
1 ATATCATG-GC
8081902 ATATCATGGC
1 ATATCATGGC
8081912 ATAT
1 ATAT
8081916 TATGTACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATCATGGC
Found at i:8081899 original size:21 final size:20
Alignment explanation
Indices: 8081871--8081928 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
8081861 CAACCCATGT
*
8081871 ATATATGTATATATCACGGC
1 ATATATGTACATATCACGGC
* *
8081891 ATATCATGTGCATATCATGGC
1 ATAT-ATGTACATATCACGGC
*
8081912 ATATTATGTACAAATCA
1 ATA-TATGTACATATCA
8081929 GTATCACATG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 4 0.13
21 26 0.84
22 1 0.03
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (20 bp):
ATATATGTACATATCACGGC
Found at i:8093117 original size:20 final size:19
Alignment explanation
Indices: 8093088--8093139 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
8093078 TCTTCTGACC
8093088 AAAATAAAAAATAT-ATCAA
1 AAAATAAAAAATATAAT-AA
*
8093107 AAAACTAAAAAGTATAATAA
1 AAAA-TAAAAAATATAATAA
*
8093127 AAAATAATAAATA
1 AAAATAAAAAATA
8093140 AAAAAGTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 11 0.39
20 15 0.54
21 2 0.07
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AAAATAAAAAATATAATAA
Found at i:8094271 original size:18 final size:18
Alignment explanation
Indices: 8094244--8094286 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
8094234 CGCATAAAAA
* *
8094244 GAAAGTAAATAAATAAAC
1 GAAAGAAAATAAACAAAC
*
8094262 GAAAGAAAATAAACAAAT
1 GAAAGAAAATAAACAAAC
8094280 GAAAGAA
1 GAAAGAA
8094287 GGGGGAAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.05, G:0.14, T:0.12
Consensus pattern (18 bp):
GAAAGAAAATAAACAAAC
Found at i:8101076 original size:6 final size:6
Alignment explanation
Indices: 8101065--8101122 Score: 116
Period size: 6 Copynumber: 9.7 Consensus size: 6
8101055 TCCTCTTATC
8101065 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
8101113 TTTTTA TTTT
1 TTTTTA TTTT
8101123 AAAAGACATA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:8117577 original size:16 final size:15
Alignment explanation
Indices: 8117543--8117576 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8117533 GAGTAAAAAG
8117543 AAAATTGAAAAGAAT
1 AAAATTGAAAAGAAT
8117558 AAAATTTGAAAAG-AT
1 AAAA-TTGAAAAGAAT
8117573 AAAA
1 AAAA
8117577 AAATGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.21
Consensus pattern (15 bp):
AAAATTGAAAAGAAT
Found at i:8118224 original size:18 final size:19
Alignment explanation
Indices: 8118201--8118238 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
8118191 TTTTAATTTC
8118201 ATTTAACAAT-TTTATAAA
1 ATTTAACAATGTTTATAAA
* *
8118219 ATTTAATAATGTTTTTAAA
1 ATTTAACAATGTTTATAAA
8118238 A
1 A
8118239 ATATATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (19 bp):
ATTTAACAATGTTTATAAA
Found at i:8119609 original size:154 final size:154
Alignment explanation
Indices: 8119377--8119672 Score: 407
Period size: 154 Copynumber: 1.9 Consensus size: 154
8119367 TTGCTATCCA
* *
8119377 GTCATAACAATTTTACTGTGAGTTTGACTAATTTATACAATCTATACAATGCCTTTAACGCTATC
1 GTCATAACAATTTTACTGCGAGTTTGACTAATTTATACAATCTATACAATACCTTTAACGCTATC
* *
8119442 CCTAAACAACCTCATTCTAGAATTGAGAAATTTGAGCAATCAATTTAACACCAGTTTAGCAATGT
66 CCTAAACAACCTCATTCTAGAATT-ACAAATTTCAGCAATCAATTTAACACCAGTTTAGCAATGT
*
8119507 CATTTTTTTTTAAAATCACGATATG
130 CAGTTTTTTTTAAAATCACGATATG
* * * * * *
8119532 GTCATAGCAATTTTATTGCGAG-TTGCCTATTTTGTACAATTTATACAATACCTTTAAAC-CTAT
1 GTCATAACAATTTTACTGCGAGTTTGACTAATTTATACAATCTATACAATACCTTT-AACGCTAT
* ** ** *
8119595 CCCTAAACAACCTCATTCTAGAATTTCTTATTTCAGCAATGGATTTAACACCAGTTTCGCAATGT
65 CCCTAAACAACCTCATTCTAGAATTACAAATTTCAGCAATCAATTTAACACCAGTTTAGCAATGT
8119660 CAGTTTTTTTTAA
130 CAGTTTTTTTTAA
8119673 GTCATTTTAG
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
153 44 0.36
154 57 0.46
155 22 0.18
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (154 bp):
GTCATAACAATTTTACTGCGAGTTTGACTAATTTATACAATCTATACAATACCTTTAACGCTATC
CCTAAACAACCTCATTCTAGAATTACAAATTTCAGCAATCAATTTAACACCAGTTTAGCAATGTC
AGTTTTTTTTAAAATCACGATATG
Found at i:8122721 original size:42 final size:42
Alignment explanation
Indices: 8122658--8122812 Score: 233
Period size: 42 Copynumber: 3.7 Consensus size: 42
8122648 CTTCGTTTTC
** * * *
8122658 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCATAT-A
8122701 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
*
8122742 TCGATGTCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
8122784 TCGATGCCAT-GCCCAGCTATGGTCTTACA
1 TCGATGCCATAGCCCAGCTATGGTCTTACA
8122813 TGAATCACAT
Statistics
Matches: 104, Mismatches: 7, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
41 21 0.20
42 82 0.79
43 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
Found at i:8122824 original size:42 final size:42
Alignment explanation
Indices: 8122658--8122856 Score: 208
Period size: 42 Copynumber: 4.7 Consensus size: 42
8122648 CTTCGTTTTC
** * *
8122658 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATA-A
1 TCGATGCCATAGCCCAGCTATGGTCTTACACAT-AT-ACATATA
*
8122701 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATACATATA
* *
8122742 TCGATGTCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATACATATA
* *
8122784 TCGATGCCAT-GCCCAGCTATGGTCTTACATGA-ATCACATATC
1 TCGATGCCATAGCCCAGCTATGGTCTTACA-CATAT-ACATATA
* *
8122826 TCACTGATGCCATATCCCAGATATGGTCTTA
1 T--C-GATGCCATAGCCCAGCTATGGTCTTA
8122857 TACGGAAATC
Statistics
Matches: 136, Mismatches: 12, Indels: 13
0.84 0.07 0.08
Matches are distributed among these distances:
40 4 0.03
41 24 0.18
42 83 0.61
43 1 0.01
44 1 0.01
45 8 0.06
46 15 0.11
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATACATATA
Found at i:8122877 original size:7 final size:7
Alignment explanation
Indices: 8122865--8122893 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
8122855 TATACGGAAA
8122865 TCACTTG
1 TCACTTG
8122872 TCACTTG
1 TCACTTG
8122879 TCACTTG
1 TCACTTG
8122886 TCACTTG
1 TCACTTG
8122893 T
1 T
8122894 AGCCGAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:8122927 original size:31 final size:31
Alignment explanation
Indices: 8122892--8122978 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
8122882 CTTGTCACTT
*
8122892 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
8122923 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
8122954 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
8122979 TGTCATTTGT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:8123058 original size:50 final size:50
Alignment explanation
Indices: 8122954--8123130 Score: 266
Period size: 50 Copynumber: 3.5 Consensus size: 50
8122944 CACTGATCAG
* * * * *
8122954 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTATCCTTGATCAGATAAGT
*
8123005 GTAGTCGAAGCTATCACTTATCACTTTCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCA-TTTATCCTTGATCAGATAAGT
*
8123055 GTAGCCGAAGCTATTACTTATCACTTTCATTTATCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTATCCTTGATCAGATAAGT
8123105 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
8123131 GTTGCCGTGG
Statistics
Matches: 116, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
49 3 0.03
50 88 0.76
51 25 0.22
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTATCCTTGATCAGATAAGT
Found at i:8127981 original size:26 final size:27
Alignment explanation
Indices: 8127947--8128000 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
8127937 ATATTTTTTA
*
8127947 TGAAGTTAAAATTTTTGGGTGACATTT
1 TGAAGTTAAAATTTTTGGGGGACATTT
8127974 TGAA-TTAAAATTTTTGGGGGACATTT
1 TGAAGTTAAAATTTTTGGGGGACATTT
8128000 T
1 T
8128001 AAACCTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.04, G:0.22, T:0.44
Consensus pattern (27 bp):
TGAAGTTAAAATTTTTGGGGGACATTT
Found at i:8134438 original size:14 final size:14
Alignment explanation
Indices: 8134419--8134450 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8134409 TAAAAGGTGG
8134419 TTTTATTTTTATTT
1 TTTTATTTTTATTT
*
8134433 TTTTATTTTTCTTT
1 TTTTATTTTTATTT
8134447 TTTT
1 TTTT
8134451 CGATTATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTATTTTTATTT
Found at i:8135340 original size:17 final size:17
Alignment explanation
Indices: 8135302--8135342 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
8135292 TTGTATTCAC
**
8135302 TTATTATTCTTTCATTTT
1 TTATT-TTCTTTCATTAG
8135320 TTATTTTCTTTCATTAG
1 TTATTTTCTTTCATTAG
8135337 TTATTT
1 TTATTT
8135343 ATTTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.17, C:0.10, G:0.02, T:0.71
Consensus pattern (17 bp):
TTATTTTCTTTCATTAG
Found at i:8135388 original size:21 final size:21
Alignment explanation
Indices: 8135362--8135407 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
8135352 ATGCCTTCAT
* *
8135362 TATTATTGGTATTTTGTTATC
1 TATTATTAGTATTTTATTATC
* *
8135383 TATTATTATTTTTTTATTATC
1 TATTATTAGTATTTTATTATC
8135404 TATT
1 TATT
8135408 CATCTATCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.04, G:0.07, T:0.67
Consensus pattern (21 bp):
TATTATTAGTATTTTATTATC
Found at i:8135764 original size:26 final size:24
Alignment explanation
Indices: 8135720--8135769 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
8135710 ATTTGTTTTA
*
8135720 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
8135744 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
8135770 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:8136172 original size:26 final size:24
Alignment explanation
Indices: 8136143--8136191 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
8136133 TAAATAAAAA
* *
8136143 ATTTTAAAATATAATAAATCAAATAC
1 ATTTAAAAACATAA-AAA-CAAATAC
8136169 ATTTAAAAACATAAAAACAAATA
1 ATTTAAAAACATAAAAACAAATA
8136192 TTAAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAC
Found at i:8138700 original size:2 final size:2
Alignment explanation
Indices: 8138693--8138717 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8138683 TCACAAATCT
8138693 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
8138718 TTTTGTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8147435 original size:14 final size:13
Alignment explanation
Indices: 8147416--8147449 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
8147406 AACAAATTAT
8147416 TTAATAATTAGTAA
1 TTAATAATTA-TAA
8147430 TTAATAATTATAA
1 TTAATAATTATAA
8147443 -TAATAAT
1 TTAATAAT
8147450 ACATAGAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 7 0.35
13 3 0.15
14 10 0.50
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (13 bp):
TTAATAATTATAA
Found at i:8151041 original size:69 final size:68
Alignment explanation
Indices: 8150925--8151062 Score: 258
Period size: 69 Copynumber: 2.0 Consensus size: 68
8150915 CTCAAATAAA
*
8150925 TGGTATAGTTTAATGGTTTATTATTCAATTAAGTTTACGGTGGGGATAATTTTATCTTTTTTTTA
1 TGGTATAGTTTAATGGTTTATTATTCAATTAAGTTTACGGTGAGGATAATTTTATCTTTTTTTT-
8150990 TTTG
65 TTTG
8150994 TGGTATAGTTTAATGGTTTATTATTCAATTAAGTTTACGGTGAGGATAATTTTATCTTTTTTTTT
1 TGGTATAGTTTAATGGTTTATTATTCAATTAAGTTTACGGTGAGGATAATTTTATCTTTTTTTTT
8151059 TTG
66 TTG
8151062 T
1 T
8151063 TTTTATATTG
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
68 5 0.07
69 63 0.93
ACGTcount: A:0.23, C:0.04, G:0.18, T:0.54
Consensus pattern (68 bp):
TGGTATAGTTTAATGGTTTATTATTCAATTAAGTTTACGGTGAGGATAATTTTATCTTTTTTTTT
TTG
Found at i:8158799 original size:3 final size:3
Alignment explanation
Indices: 8158793--8158951 Score: 75
Period size: 3 Copynumber: 54.0 Consensus size: 3
8158783 TTCTAATACC
* * *
8158793 ATT ATT ATT -TT ATT ATT ACT ATT ATT -TCT ATT ATT ATT TTT ATC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT
* * * * *
8158837 ACT ATT ATT TTT ATT ATG ATT A-T ATT -TT CTT -TT -TT GAGT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT
* **
8158878 ATCT ACTT ATT ATT -TT ATT ATT AATT AAT -TT AGC ATT ATTT ATT ATT
1 AT-T A-TT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT A-TT ATT ATT
* * *
8158925 ATT GTT ATT TTT ATT ATT ATT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
8158952 TTTGCTATTT
Statistics
Matches: 116, Mismatches: 26, Indels: 28
0.68 0.15 0.16
Matches are distributed among these distances:
2 15 0.13
3 88 0.76
4 12 0.10
5 1 0.01
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:8158835 original size:18 final size:18
Alignment explanation
Indices: 8158795--8158828 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
8158785 CTAATACCAT
8158795 TATTATTT-TATTATTAC
1 TATTATTTCTATTATTAC
8158812 TATTATTTCTATTATTA
1 TATTATTTCTATTATTA
8158829 TTTTTATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (18 bp):
TATTATTTCTATTATTAC
Found at i:8162755 original size:129 final size:132
Alignment explanation
Indices: 8162506--8162793 Score: 363
Period size: 129 Copynumber: 2.2 Consensus size: 132
8162496 ACGGAGTATT
* * * * * * * *
8162506 GCCTTCATTTTAAAGGATTTTTAGAAGATACGAGCGAAATTTTGAGGAGATATTTGATTATTTTA
1 GCCTTCGTTTTAAAGGATTTTTAAAAGACATGAGTGAAA-TTTGAAGTGATATTCGATTATTTTA
*
8162571 AGCAAACGAGAAATTCGCCAACCAACACGTTAGGGCACGATTCCACGAGTTGCCAAATATCGCA-
65 AGCAAACGAGAAATTCGCCAACCAACACGTTAGGGCACGATTCCACGAGTTGCCAAATATCGAAT
8162635 CATC
130 C-TC
* **
8162639 GCCTTCG-TTTAAGGGA-TTTTAAAAGACATGAGTGAAATTTGAAGTGATATTCGATTATTTTGG
1 GCCTTCGTTTTAAAGGATTTTTAAAAGACATGAGTGAAATTTGAAGTGATATTCGATTATTTTAA
* *
8162702 GCAAACGTGAAATT-G-TAACCCAACACGTTAGGGCACGATTCCACG-GATTGCCAAATATCGAA
66 GCAAACGAGAAATTCGCCAA-CCAACACGTTAGGGCACGATTCCACGAG-TTGCCAAATATCGAA
8162764 TCTC
129 TCTC
*
8162768 GTCTTCGTTTTAAAGGATTTTTAAAA
1 GCCTTCGTTTTAAAGGATTTTTAAAA
8162794 AAAAAGTGAA
Statistics
Matches: 134, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
128 3 0.02
129 49 0.37
130 43 0.32
131 25 0.19
132 8 0.06
133 6 0.04
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (132 bp):
GCCTTCGTTTTAAAGGATTTTTAAAAGACATGAGTGAAATTTGAAGTGATATTCGATTATTTTAA
GCAAACGAGAAATTCGCCAACCAACACGTTAGGGCACGATTCCACGAGTTGCCAAATATCGAATC
TC
Found at i:8164944 original size:21 final size:22
Alignment explanation
Indices: 8164898--8164944 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
8164888 GGCGCGAAGC
*
8164898 GTACGGGGCTGTGCTGGCGCGG
1 GTACGGGGCTGTGCTGGCGAGG
8164920 GTACGGGGGCTGTGCT-G-GAGG
1 GTAC-GGGGCTGTGCTGGCGAGG
8164941 GTAC
1 GTAC
8164945 AGAGGTAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
22 5 0.22
23 11 0.48
ACGTcount: A:0.09, C:0.19, G:0.53, T:0.19
Consensus pattern (22 bp):
GTACGGGGCTGTGCTGGCGAGG
Found at i:8172070 original size:43 final size:44
Alignment explanation
Indices: 8172000--8172106 Score: 118
Period size: 43 Copynumber: 2.5 Consensus size: 44
8171990 GAAAAGCTCG
* *
8172000 TACAATGCCAAC-GTCCCAGA-TGTGGTCTTACATGTAAA-TAAA
1 TACAATGCCAACTGTCCCAGACAGTGGTCTTACATG-AAACCAAA
8172042 TATCAATGCC-ACTGTCCCAGACAG-GGTCTTACATGAAACCAAA
1 TA-CAATGCCAACTGTCCCAGACAGTGGTCTTACATGAAACCAAA
* *
8172085 TACGATGCCGA-TGTCCCAGACA
1 TACAATGCCAACTGTCCCAGACA
8172107 TAATCTTACA
Statistics
Matches: 57, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
42 24 0.42
43 32 0.56
44 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (44 bp):
TACAATGCCAACTGTCCCAGACAGTGGTCTTACATGAAACCAAA
Found at i:8181104 original size:41 final size:42
Alignment explanation
Indices: 8181038--8181122 Score: 163
Period size: 41 Copynumber: 2.0 Consensus size: 42
8181028 TACATGTTAC
8181038 ATAATTTTATTTTTTTTACATGAAATTATTATTTAAAACACA
1 ATAATTTTATTTTTTTTACATGAAATTATTATTTAAAACACA
8181080 ATAATTTTA-TTTTTTTACATGAAATTATTATTTAAAACACA
1 ATAATTTTATTTTTTTTACATGAAATTATTATTTAAAACACA
8181121 AT
1 AT
8181123 TTGTAAATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 34 0.79
42 9 0.21
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.49
Consensus pattern (42 bp):
ATAATTTTATTTTTTTTACATGAAATTATTATTTAAAACACA
Found at i:8182427 original size:54 final size:54
Alignment explanation
Indices: 8182363--8182473 Score: 179
Period size: 54 Copynumber: 2.1 Consensus size: 54
8182353 CCTTCATCTT
* * *
8182363 TCTTGCCAAACTTAAATTCCCTTT-CCCCTATTCTACAATCACTTCGGCCACCCA
1 TCTTGCCAAACTTAAATTCCCTTTCCCCCT-TTCTACAACCACTCCGACCACCCA
8182417 TCTTGCCAAACTTAAATTCCCTTTCCCCCTTTCTACAACCACTCCGACCACCCA
1 TCTTGCCAAACTTAAATTCCCTTTCCCCCTTTCTACAACCACTCCGACCACCCA
8182471 TCT
1 TCT
8182474 CACTATTTCT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
54 48 0.91
55 5 0.09
ACGTcount: A:0.23, C:0.41, G:0.05, T:0.31
Consensus pattern (54 bp):
TCTTGCCAAACTTAAATTCCCTTTCCCCCTTTCTACAACCACTCCGACCACCCA
Found at i:8191494 original size:18 final size:18
Alignment explanation
Indices: 8191471--8191505 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8191461 TTTTAAAAGC
8191471 TTGAAAATTTAAAAATAT
1 TTGAAAATTTAAAAATAT
*
8191489 TTGAAAATTTTAAAATA
1 TTGAAAATTTAAAAATA
8191506 AATGTTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (18 bp):
TTGAAAATTTAAAAATAT
Found at i:8195079 original size:16 final size:18
Alignment explanation
Indices: 8195041--8195085 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
8195031 ATGAGTTAAT
8195041 TATATTTATTAGTTAAAA
1 TATATTTATTAGTTAAAA
8195059 TATATTTATTAGTTAAAA
1 TATATTTATTAGTTAAAA
8195077 TATATTTAT
1 TATATTTAT
8195086 ATAAAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.53
Consensus pattern (18 bp):
TATATTTATTAGTTAAAA
Found at i:8195262 original size:21 final size:21
Alignment explanation
Indices: 8195228--8195270 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
8195218 TGTTACGTAA
8195228 ATTTAATTTAAAAAT-TAAAT
1 ATTTAATTTAAAAATATAAAT
*
8195248 ATTTACATTTGAAAATATAAAT
1 ATTTA-ATTTAAAAATATAAAT
8195270 A
1 A
8195271 AAATTATTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 9 0.45
22 6 0.30
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
ATTTAATTTAAAAATATAAAT
Found at i:8197372 original size:22 final size:23
Alignment explanation
Indices: 8197330--8197372 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
8197320 TTTTAACTTA
*
8197330 ATTTTACAGTTAATATATTAATG
1 ATTTTAAAGTTAATATATTAATG
*
8197353 ATTTTAAAG-TAATATTTTAA
1 ATTTTAAAGTTAATATATTAA
8197373 GTACAAACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (23 bp):
ATTTTAAAGTTAATATATTAATG
Found at i:8204023 original size:9 final size:9
Alignment explanation
Indices: 8204007--8204042 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
8203997 TCTTGATTAA
8204007 ATTAATAAT
1 ATTAATAAT
*
8204016 AATAATAAT
1 ATTAATAAT
*
8204025 ATTATTAAT
1 ATTAATAAT
8204034 ATTAATAAT
1 ATTAATAAT
8204043 GCGTTGCATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATTAATAAT
Found at i:8205490 original size:41 final size:41
Alignment explanation
Indices: 8205437--8205519 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
8205427 TCCTTATAAA
*
8205437 TAGATGGTACCAATAGGGTTAAATACAAAACTTAAAAATAT
1 TAGATGGCACCAATAGGGTTAAATACAAAACTTAAAAATAT
8205478 TAGATGGCACCAATAGGGTTAAATACAAAACTTAAAAATAT
1 TAGATGGCACCAATAGGGTTAAATACAAAACTTAAAAATAT
8205519 T
1 T
8205520 TTTACTCTAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.48, C:0.11, G:0.14, T:0.27
Consensus pattern (41 bp):
TAGATGGCACCAATAGGGTTAAATACAAAACTTAAAAATAT
Found at i:8208077 original size:12 final size:11
Alignment explanation
Indices: 8208062--8208101 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
8208052 GAAAAGCAAG
8208062 GAAAGAAAGAAA
1 GAAAGAAAG-AA
*
8208074 GAAAGAAAGGA
1 GAAAGAAAGAA
8208085 GAAAAGAAAGAA
1 G-AAAGAAAGAA
8208097 GAAAG
1 GAAAG
8208102 GGAAAATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 6 0.24
12 19 0.76
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (11 bp):
GAAAGAAAGAA
Found at i:8208114 original size:20 final size:20
Alignment explanation
Indices: 8208067--8208107 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
8208057 GCAAGGAAAG
8208067 AAAGAAAGAAAGAAAGGAGA
1 AAAGAAAGAAAGAAAGGAGA
8208087 AAAGAAAG-AAGAAAGG-GA
1 AAAGAAAGAAAGAAAGGAGA
8208105 AAA
1 AAA
8208108 TTGAAAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.24
19 8 0.38
20 8 0.38
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (20 bp):
AAAGAAAGAAAGAAAGGAGA
Found at i:8209269 original size:21 final size:19
Alignment explanation
Indices: 8209230--8209269 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
8209220 TGAACATGTG
*
8209230 TTTATTGTGAAATTGAATA
1 TTTATTGTGAAAGTGAATA
8209249 TTTATTAGTGAAAAGTGAATA
1 TTTATT-GTG-AAAGTGAATA
8209270 GAATTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 3 0.17
21 9 0.50
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.42
Consensus pattern (19 bp):
TTTATTGTGAAAGTGAATA
Found at i:8209474 original size:12 final size:12
Alignment explanation
Indices: 8209457--8209481 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8209447 GCCGACTACT
8209457 GTTACTGTTACC
1 GTTACTGTTACC
8209469 GTTACTGTTACC
1 GTTACTGTTACC
8209481 G
1 G
8209482 ATTCGGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:8209518 original size:6 final size:6
Alignment explanation
Indices: 8209507--8209546 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
8209497 TGTCGGATAT
* * *
8209507 TGTTAC TGTTAC CGTTAC CGTTAC TATTAC TGTTAC TGTT
1 TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC TGTT
8209547 TCGGATTTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.47
Consensus pattern (6 bp):
TGTTAC
Found at i:8209773 original size:18 final size:18
Alignment explanation
Indices: 8209715--8209905 Score: 104
Period size: 18 Copynumber: 10.6 Consensus size: 18
8209705 ATAACTGAAA
*
8209715 TTACTGAATAATTGACTG
1 TTACTGGATAATTGACTG
**
8209733 TTACCAGATAATTGACTG
1 TTACTGGATAATTGACTG
8209751 TTACTGGAT-ATTAGACTG
1 TTACTGGATAATT-GACTG
* * * *
8209769 TTACTGAATAACTGAATA
1 TTACTGGATAATTGACTG
* *
8209787 TTACTGAATAATTGA-TCA
1 TTACTGGATAATTGACT-G
* * *
8209805 TTACTGAATAACTGATTG
1 TTACTGGATAATTGACTG
* *
8209823 TCACTGAATGAA-TGACTG
1 TTACTGGAT-AATTGACTG
* * * *
8209841 CTACTGAATAACTTAATTG
1 TTACTGGATAA-TTGACTG
* *
8209860 TTACTGAAT-ATATGA-TT
1 TTACTGGATAAT-TGACTG
* *
8209877 TTACTGAATAATTTACTG
1 TTACTGGATAATTGACTG
8209895 TTACTGGATAA
1 TTACTGGATAA
8209906 CCGATTAATT
Statistics
Matches: 139, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
17 19 0.14
18 103 0.74
19 17 0.12
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
TTACTGGATAATTGACTG
Found at i:8209791 original size:36 final size:36
Alignment explanation
Indices: 8209704--8209887 Score: 148
Period size: 36 Copynumber: 5.1 Consensus size: 36
8209694 AAAGGTATAA
*
8209704 AATAACTGAA-ATTACTGAATAATTGACTGTTAC-C
1 AATAACTGAATATTACTGAATAATTGACTGTTACTG
* * * *
8209738 AGATAATTGACTGTTACTGGAT-ATTAGACTGTTACTG
1 A-ATAACTGAATATTACTGAATAATT-GACTGTTACTG
*
8209775 AATAACTGAATATTACTGAATAATTGA-TCATTACTG
1 AATAACTGAATATTACTGAATAATTGACT-GTTACTG
* * * *
8209811 AATAACTGATTGTCACTGAATGAA-TGACTGCTACTG
1 AATAACTGAATATTACTGAAT-AATTGACTGTTACTG
* * *
8209847 AATAACTTAATTGTTACTGAAT-ATATGA-TTTTACTG
1 AATAACTGAA-TATTACTGAATAAT-TGACTGTTACTG
8209883 AATAA
1 AATAA
8209888 TTTACTGTTA
Statistics
Matches: 119, Mismatches: 20, Indels: 20
0.75 0.13 0.13
Matches are distributed among these distances:
34 1 0.01
35 12 0.10
36 86 0.72
37 20 0.17
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.36
Consensus pattern (36 bp):
AATAACTGAATATTACTGAATAATTGACTGTTACTG
Found at i:8209840 original size:72 final size:72
Alignment explanation
Indices: 8209704--8209905 Score: 182
Period size: 72 Copynumber: 2.8 Consensus size: 72
8209694 AAAGGTATAA
* * * * * *
8209704 AATAACTGAA-ATTACTGAATAATTGA-CTGTTAC-CAGATAATTGACTGTTACTGGATATTAGA
1 AATAACTGAATATTACTGAATAATTGATC-ATTACTGA-ATAACTGACTGTCACTGAATAATAGA
*
8209766 CTGTTACTG
64 CTGCTACTG
*
8209775 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGATTGTCACTGAATGAAT-GAC
1 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGACTGTCACTGAAT-AATAGAC
8209839 TGCTACTG
65 TGCTACTG
* * * * * * *
8209847 AATAACTTAATTGTTACTGAAT-ATATGAT-TTTACTGAATAATTTACTGTTACTGGATAA
1 AATAACTGAA-TATTACTGAATAAT-TGATCATTACTGAATAACTGACTGTCACTGAATAA
8209906 CCGATTAATT
Statistics
Matches: 109, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
71 12 0.11
72 79 0.72
73 18 0.17
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (72 bp):
AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGACTGTCACTGAATAATAGACT
GCTACTG
Found at i:8209906 original size:54 final size:53
Alignment explanation
Indices: 8209715--8209905 Score: 165
Period size: 54 Copynumber: 3.5 Consensus size: 53
8209705 ATAACTGAAA
* * * *
8209715 TTACTGAATAATTGACTGTTAC-CAGATAATTGACTGTTACTGGATAT-TAGACTG
1 TTACTGAATAATTGACTGTTACTGA-ATAATTGATTGTTACTGAATATAT-GA-TT
* * * **
8209769 TTACTGAATAACTGAATATTACTGAATAATTGATCATTACTGAATA-ACTGATT
1 TTACTGAATAATTGACTGTTACTGAATAATTGATTGTTACTGAATATA-TGATT
* * *
8209822 GTCACTGAATGAA-TGACTGCTACTGAATAACTTAATTGTTACTGAATATATGATT
1 -TTACTGAAT-AATTGACTGTTACTGAATAA-TTGATTGTTACTGAATATATGATT
* *
8209877 TTACTGAATAATTTACTGTTACTGGATAA
1 TTACTGAATAATTGACTGTTACTGAATAA
8209906 CCGATTAATT
Statistics
Matches: 109, Mismatches: 20, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
53 3 0.03
54 82 0.75
55 23 0.21
56 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (53 bp):
TTACTGAATAATTGACTGTTACTGAATAATTGATTGTTACTGAATATATGATT
Found at i:8209965 original size:18 final size:18
Alignment explanation
Indices: 8209944--8209978 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8209934 AGTTATTATT
* *
8209944 GAATAATTGATTGTTACC
1 GAATAACTGACTGTTACC
8209962 GAATAACTGACTGTTAC
1 GAATAACTGACTGTTAC
8209979 TAAATAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (18 bp):
GAATAACTGACTGTTACC
Found at i:8225440 original size:46 final size:43
Alignment explanation
Indices: 8225373--8225785 Score: 231
Period size: 44 Copynumber: 9.5 Consensus size: 43
8225363 ATTATACAGG
* *
8225373 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTTAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A--TTAGA
* * ** *
8225419 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCCA-GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG--ATTAGA
*
8225463 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGA-TAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATTAG--A
* * * * *
8225507 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG----GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATTAGA
* * ** * * *
8225546 TCTTATCTCTCTGA-AGTTACAGTAGATAAGATC--ACATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGATTAGA
* * * *
8225587 TCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAAAATTTTAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATC-AAAGA--TTAGA
* * ** *
8225633 TATTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG--ATTAGA
* * * *
8225677 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA-CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATTA-GA
* * * *
8225720 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAA-ATAAAGGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAT-TA-GA
* *
8225764 TCTTATCTCTCTGAGGTTACAG
1 TCTTATCTCCCTGAGATTACAG
8225786 CAGAGTAGAT
Statistics
Matches: 282, Mismatches: 64, Indels: 44
0.72 0.16 0.11
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 23 0.08
41 27 0.10
42 8 0.03
43 30 0.11
44 127 0.45
45 2 0.01
46 61 0.22
47 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATTAGA
Found at i:8225739 original size:87 final size:87
Alignment explanation
Indices: 8225636--8225797 Score: 218
Period size: 87 Copynumber: 1.9 Consensus size: 87
8225626 TTTTAGATAT
* * * *
8225636 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC-CAGAGATCTTATCTCCCTGAGATTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAG-GATCTTATCTCCCTGAGATTACAGC
*
8225700 GGAGCAGATCGAAGACACTATCC
65 AGAGCAGATCGAAGACACTATCC
* * * *
8225723 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCA
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
*
8225788 GAGTAGATCG
66 GAGCAGATCG
8225798 CATCAAGTCT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 62 0.97
88 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
GAGCAGATCGAAGACACTATCC
Found at i:8225901 original size:218 final size:213
Alignment explanation
Indices: 8225372--8225901 Score: 550
Period size: 214 Copynumber: 2.5 Consensus size: 213
8225362 CATTATACAG
* * * *** * *
8225372 GTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTTAGATCTTATCTCCCTGAGGTT
1 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAA-AAATTAAGAGAGTATCTCCCTAAAGTT
** * *
8225437 ACAGCGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGAT
65 ACAGCGGAGCAGACAGAAGACAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGAC
* *
8225502 AGTAATCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACA
130 ACTAATCCTATCTCCCTGAGATTACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACA
* *
8225567 GTAGATAAGATCACATCAG
195 GCAGATAAGATCACATCAA
* * * * *
8225586 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAAAATTTTAGATATTATCTCCCTGAGGTT
1 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAAAA-TTAAGAGAGTATCTCCCTAAAGTT
* ** * *
8225651 ACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGAC
65 ACAGCGGAGCAGACAGAAGACAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGAC
* *
8225716 ACT-ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAG
130 ACTAATCCTATCTCCCTGAGA-TTACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAA
*
8225779 GTTACAGCAGAGT-AGATCGCATCAA
189 GTTACAGCAGA-TAAGATCACATCAA
* * * * *
8225804 GTCTTATTTCCCTGAAGA-TGCAGTGGAATAGACTGAAAACAA-TAAG-GCGTGTCTCCCTAAAG
1 GTCTTATTTCCCTG-AGATTACAGTGGAACAGAC-CAAAA-AATTAAGAGAGTATCTCCCTAAAG
** * * *
8225866 TTGTAGCGGAGCGGACAGAAGATAGTGATTCTTATC
63 TTACAGCGGAGCAGACAGAAGACAGAGA-TCTTATC
8225902 ATGTCTAATC
Statistics
Matches: 272, Mismatches: 32, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
212 1 0.00
213 30 0.11
214 124 0.46
217 29 0.11
218 78 0.29
219 8 0.03
220 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (213 bp):
GTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAAAATTAAGAGAGTATCTCCCTAAAGTTA
CAGCGGAGCAGACAGAAGACAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACA
CTAATCCTATCTCCCTGAGATTACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAG
CAGATAAGATCACATCAA
Found at i:8229027 original size:25 final size:25
Alignment explanation
Indices: 8228999--8229071 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
8228989 TTAGATCCAC
* *
8228999 AGAGCATACCGATTTATAGCTCGCG
1 AGAGCATACCGATTTACAGCTCGAG
* *
8229024 AGAGCATACCGATCTACAGCTTGAG
1 AGAGCATACCGATTTACAGCTCGAG
* *
8229049 TGAGCATACCGATTCACAGCTCG
1 AGAGCATACCGATTTACAGCTCG
8229072 TATGAACATA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (25 bp):
AGAGCATACCGATTTACAGCTCGAG
Found at i:8229081 original size:25 final size:25
Alignment explanation
Indices: 8229003--8229082 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
8228993 ATCCACAGAG
* * * * *
8229003 CATACCGATTTATAGCTCGCGAGAG
1 CATACCGATCTACAGCTCGAGTGAA
* *
8229028 CATACCGATCTACAGCTTGAGTGAG
1 CATACCGATCTACAGCTCGAGTGAA
8229053 CATACCGAT-TCACAGCTCGTA-TGAA
1 CATACCGATCT-ACAGCTCG-AGTGAA
8229078 CATAC
1 CATAC
8229083 ATGTACATGA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
24 1 0.02
25 44 0.96
26 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (25 bp):
CATACCGATCTACAGCTCGAGTGAA
Found at i:8231458 original size:47 final size:46
Alignment explanation
Indices: 8231369--8231486 Score: 132
Period size: 47 Copynumber: 2.5 Consensus size: 46
8231359 TTATTTGCTT
8231369 AACTAATGGTTATCCACAACGTATTTTAGTCAACAGTCATCTACTC
1 AACTAATGGTTATCCACAACGTATTTTAGTCAACAGTCATCTACTC
* * *** *
8231415 AACTAATAGTTTATCCACAATGTATTTTAGTCTGTAGTTATCTACT-
1 AACTAAT-GGTTATCCACAACGTATTTTAGTCAACAGTCATCTACTC
*
8231461 GAC-AAGTGGTTCATCCACAACGTATT
1 AACTAA-TGGTT-ATCCACAACGTATT
8231487 AGTAGCTATT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
45 5 0.08
46 23 0.38
47 32 0.53
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (46 bp):
AACTAATGGTTATCCACAACGTATTTTAGTCAACAGTCATCTACTC
Found at i:8248279 original size:27 final size:27
Alignment explanation
Indices: 8248249--8248305 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
8248239 GCATTACATT
8248249 AAAACAAGTTAAAATAAATAATATATA
1 AAAACAAGTTAAAATAAATAATATATA
* * * *
8248276 AAAATAATTTAAAATGAATGATATATA
1 AAAACAAGTTAAAATAAATAATATATA
8248303 AAA
1 AAA
8248306 TATTTTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (27 bp):
AAAACAAGTTAAAATAAATAATATATA
Found at i:8253999 original size:18 final size:17
Alignment explanation
Indices: 8253945--8254006 Score: 52
Period size: 18 Copynumber: 3.5 Consensus size: 17
8253935 ATTTTTAATG
* *
8253945 ATTTTTTTTAATTTTTA
1 ATTTTTTTAAATTTATA
* * *
8253962 ATGTTTTTAATTTTTCTA
1 ATTTTTTTAA-ATTTATA
8253980 ATATTTTTTAAATTTATA
1 AT-TTTTTTAAATTTATA
8253998 ATTTCTTTT
1 ATTT-TTTT
8254007 TTACTTTTGT
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
17 10 0.29
18 18 0.51
19 7 0.20
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.69
Consensus pattern (17 bp):
ATTTTTTTAAATTTATA
Found at i:8255290 original size:245 final size:247
Alignment explanation
Indices: 8254855--8255332 Score: 768
Period size: 245 Copynumber: 1.9 Consensus size: 247
8254845 TTGAATGGCA
* **
8254855 GACCTCTCATCTATGTCAAGTAAGTAGTTTTGATTGTTCAAGCTTGTAAGATCTCGGGCTCTCAA
1 GACCTCTCATCTATATCAAGTAAGTAGTTTTGATCATTCAAGCTTGTAAGATCTCGGGCTCTCAA
* * * *
8254920 GTGTCTTAGCTCACAACGTGATCTTGGTCAAAAGAGCTAACCTACAAGGCATGAGCTCGCAAGGT
66 GTGTCTTAGCTCACAACATGATCTTAGTAAAAAGAGCTAACCAACAAGGCATGAGCTCGCAAGGT
* **
8254985 GGCTCACAATTATAACAACTCAATTTTTAGTAGTACTGAAAAAGGCAGTTTTTAAACCCTATTTT
131 GGCTCACAATTATAACAACTCAATTTTCAGTAGTACTGAAAAAGGCAGTTTCGAAACCCTATTTT
8255050 TGTAA-CTGAG-TCTGTAAATA-TAAATATGAATATTTACGGGGTTAATATAAG
196 TGTAATC-GAGTTC-GTAAATATTAAATATGAATATTTACGGGGTTAATATAAG
*
8255101 GACCTCTCATCTATATCAAGTAAGTGGTTTTGATCATTCAAGCTTGTAAG-TCTCGGGCTCTCAA
1 GACCTCTCATCTATATCAAGTAAGTAGTTTTGATCATTCAAGCTTGTAAGATCTCGGGCTCTCAA
8255165 GTGTCTTAGCTCACAACATGATCTTAGTAAAAAGAGCTAACCAACAAGGCATGAGCTCGCAAGGT
66 GTGTCTTAGCTCACAACATGATCTTAGTAAAAAGAGCTAACCAACAAGGCATGAGCTCGCAAGGT
* * *
8255230 GGCTCACAATTGTAACAACTCGATTTTCAGTAGTACCT-AAAAAGGCAGTTTCGGAACCCTATTT
131 GGCTCACAATTATAACAACTCAATTTTCAGTAGTA-CTGAAAAAGGCAGTTTCGAAACCCTATTT
8255294 TTGTAATCGAGTTCGTAAATATTAAATATGAATATTTAC
195 TTGTAATCGAGTTCGTAAATATTAAATATGAATATTTAC
8255333 AAGATTAATA
Statistics
Matches: 214, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
245 146 0.68
246 68 0.32
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (247 bp):
GACCTCTCATCTATATCAAGTAAGTAGTTTTGATCATTCAAGCTTGTAAGATCTCGGGCTCTCAA
GTGTCTTAGCTCACAACATGATCTTAGTAAAAAGAGCTAACCAACAAGGCATGAGCTCGCAAGGT
GGCTCACAATTATAACAACTCAATTTTCAGTAGTACTGAAAAAGGCAGTTTCGAAACCCTATTTT
TGTAATCGAGTTCGTAAATATTAAATATGAATATTTACGGGGTTAATATAAG
Found at i:8260819 original size:46 final size:46
Alignment explanation
Indices: 8260767--8260942 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
8260757 TATTTTGGCA
8260767 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
8260813 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * * *
8260858 CATCCGAGCTCATTGAATTGAGTCCGACTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
8260906 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8260943 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 60 0.57
47 25 0.24
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:8260922 original size:93 final size:93
Alignment explanation
Indices: 8260763--8260935 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
8260753 AGGATATTTT
* * * *
8260763 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAATTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
8260828 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
8260856 GGCATCCGAGCTCATTGAATTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAATTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
8260921 TTGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
8260936 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAATTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:8263949 original size:30 final size:29
Alignment explanation
Indices: 8263915--8263971 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
8263905 ATAGTATCGT
8263915 ATCTTGGATTTCTTTATTCTGGGTTTCTCA
1 ATCTTGGATTTCTTTATTC-GGGTTTCTCA
* *
8263945 ATCTTGGATTTTTTTATTCGGTTTTCT
1 ATCTTGGATTTCTTTATTCGGGTTTCT
8263972 TGTTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.12, C:0.14, G:0.16, T:0.58
Consensus pattern (29 bp):
ATCTTGGATTTCTTTATTCGGGTTTCTCA
Found at i:8266818 original size:47 final size:47
Alignment explanation
Indices: 8266756--8266872 Score: 225
Period size: 47 Copynumber: 2.5 Consensus size: 47
8266746 AACGTCCGAA
8266756 CTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCTGAG
8266803 CTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCTGAG
*
8266850 CTCATTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
8266873 GCTTATGGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCTGAG
Found at i:8273054 original size:52 final size:54
Alignment explanation
Indices: 8272998--8273108 Score: 199
Period size: 54 Copynumber: 2.1 Consensus size: 54
8272988 GTTAATTTCT
*
8272998 TTCAT-AAAAAAAAA-CTTTATAGACAAGTTAATTCTTAATATTGGAATCAATC
1 TTCATAAAAAAAAAACCTTTATAGACAAGTTAATTCTTAATATGGGAATCAATC
8273050 TTCATAAAAAAAAAACCTTTATAGACAAGTTAATTCTTAATATGGGAATCAATC
1 TTCATAAAAAAAAAACCTTTATAGACAAGTTAATTCTTAATATGGGAATCAATC
8273104 TTCAT
1 TTCAT
8273109 CGAAAAGTAA
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
52 5 0.09
53 9 0.16
54 42 0.75
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.34
Consensus pattern (54 bp):
TTCATAAAAAAAAAACCTTTATAGACAAGTTAATTCTTAATATGGGAATCAATC
Found at i:8274332 original size:19 final size:20
Alignment explanation
Indices: 8274296--8274334 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8274286 TTTAAATATA
*
8274296 GTAAATTAAAATATAAAATT
1 GTAAAGTAAAATATAAAATT
8274316 GTAAAGTAAAA-ATAAAATT
1 GTAAAGTAAAATATAAAATT
8274335 ATTTAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (20 bp):
GTAAAGTAAAATATAAAATT
Found at i:8275630 original size:99 final size:98
Alignment explanation
Indices: 8275455--8275676 Score: 266
Period size: 99 Copynumber: 2.2 Consensus size: 98
8275445 TATAGTCCGT
* * * *
8275455 TGATTTACGATCACAACTGTCATTTTTCAAGCTCGCTGATTTACAAACATGGCTTAAGTTCATTG
1 TGATTTACGATCACAACT-TCATTTTTAAAGCTCGCTAATTTACAAACAAGGCTTAAGTTAATTG
* * **
8275520 ATTTACGATCATAAACA-TTACATTAAAAGTTTGC
65 ATTTACAATCATAAAAACTT-CATTAAAAGTTCAC
* * * * *
8275554 TGATTTACTATCACAACTATCATTTTTAAAGCTTGCTAATTTACGATCAAGGCTTCAGTTAATTG
1 TGATTTACGATCACAACT-TCATTTTTAAAGCTCGCTAATTTACAAACAAGGCTTAAGTTAATTG
*
8275619 ATTTACAATCATAAAAACTTCATTAAGAGTTCAC
65 ATTTACAATCATAAAAACTTCATTAAAAGTTCAC
**
8275653 CAATTTACGATCACAACTTCATTT
1 TGATTTACGATCACAACTTCATTT
8275677 AAATAATTTG
Statistics
Matches: 104, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
98 6 0.06
99 96 0.92
100 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (98 bp):
TGATTTACGATCACAACTTCATTTTTAAAGCTCGCTAATTTACAAACAAGGCTTAAGTTAATTGA
TTTACAATCATAAAAACTTCATTAAAAGTTCAC
Found at i:8276178 original size:11 final size:11
Alignment explanation
Indices: 8276164--8276208 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
8276154 AGATAAATAT
8276164 TATTTTATTAA
1 TATTTTATTAA
*
8276175 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
8276188 TATTTTATTAT
1 TATTTTATTAA
8276199 TATTTTATTA
1 TATTTTATTA
8276209 GTAGATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:8278059 original size:46 final size:46
Alignment explanation
Indices: 8277992--8278444 Score: 631
Period size: 46 Copynumber: 9.8 Consensus size: 46
8277982 GCTCTCTGAA
** * * *
8277992 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATTAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
** *
8278038 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
*
8278084 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
*
8278130 GA-GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 -ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
** *
8278176 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
* *
8278222 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAATGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
** * *
8278268 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGACAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
*
8278314 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
* *
8278360 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
* * * * *
8278406 A-GAAAATGAGTAAAACCATAGTTGAAAGACACTATGGCA
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCA
8278445 TCATGTCAAA
Statistics
Matches: 371, Mismatches: 33, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
45 2 0.01
46 368 0.99
47 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
Found at i:8278242 original size:138 final size:138
Alignment explanation
Indices: 8278002--8278444 Score: 717
Period size: 138 Copynumber: 3.2 Consensus size: 138
8277992 ATGAAATGTG
* * * *
8278002 TAAGACCATGGTTGAAAGATACCATGGCAACATTATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGTGTAAGACCATGGTTGAAAGA
8278067 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACGA
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACGA
8278132 GAAATGAA
131 GAAATGAA
8278140 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGTGTAAGACCATGGTTGAAAGA
** * *
8278205 TACCATGGCAATGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAATGTGACGG
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACGA
8278270 GAAATGAA
131 GAAATGAA
* **
8278278 TAAGACCATGGTTGAAAGATACCATGACAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGTGTAAGACCATGGTTGAAAGA
*
8278343 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC-A
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACGA
*
8278407 GAAAATGAG
131 G-AAATGAA
* * * *
8278416 TAAAACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
8278445 TCATGTCAAA
Statistics
Matches: 282, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
137 1 0.00
138 281 1.00
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.20
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGTGTAAGACCATGGTTGAAAGA
TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACGA
GAAATGAA
Found at i:8283678 original size:39 final size:38
Alignment explanation
Indices: 8283594--8283681 Score: 113
Period size: 39 Copynumber: 2.3 Consensus size: 38
8283584 ATGAGATTGG
*
8283594 AAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAATATCCGGACATGAGATCCGCAGGCTACATGCTAGA
* * * *
8283632 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGGA
1 AA-ATATCCGGACATGAGATCCGCAGGCTACATGCT-AGA
8283672 AAATATCCGG
1 AAATATCCGG
8283682 GTTAAAGACC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.05
39 37 0.86
40 4 0.09
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.22
Consensus pattern (38 bp):
AAATATCCGGACATGAGATCCGCAGGCTACATGCTAGA
Found at i:8283908 original size:2 final size:2
Alignment explanation
Indices: 8283903--8283928 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8283893 TATATATATA
8283903 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
8283929 CGAATGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:8291909 original size:39 final size:39
Alignment explanation
Indices: 8291785--8291889 Score: 183
Period size: 39 Copynumber: 2.7 Consensus size: 39
8291775 GAGATTGGAA
8291785 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
*
8291824 ATATCCGGACATGAGATCCGCAGGCTATATGCTTGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
* *
8291863 ATATCCGGACTTGAGGTCCGCAGGCTA
1 ATATCCGGACATGAGATCCGCAGGCTA
8291890 CGTGCTGGGA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.24
Consensus pattern (39 bp):
ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
Found at i:8298953 original size:39 final size:39
Alignment explanation
Indices: 8298909--8299013 Score: 183
Period size: 39 Copynumber: 2.7 Consensus size: 39
8298899 GAGATTGGAA
*
8298909 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAGT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
8298948 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
* *
8298987 ATATCCGGACTTGAGGTCCGCAGGCTA
1 ATATCCGGACATGAGATCCGCAGGCTA
8299014 CGTGCTGGGA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
Found at i:8299030 original size:39 final size:38
Alignment explanation
Indices: 8298907--8299033 Score: 173
Period size: 39 Copynumber: 3.3 Consensus size: 38
8298897 ATGAGATTGG
8298907 AAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
*
8298945 AGTATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 A-AATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
* * ** *
8298984 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGGA
1 AA-ATATCCGGACATGAGATCCGCAGGCTATATGCT-AGA
8299024 AAATATCCGG
1 AAATATCCGG
8299034 GTTACAGACC
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 74 0.94
40 4 0.05
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (38 bp):
AAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
Found at i:8307241 original size:39 final size:39
Alignment explanation
Indices: 8307117--8307221 Score: 192
Period size: 39 Copynumber: 2.7 Consensus size: 39
8307107 GAGATTGGAA
8307117 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
8307156 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
* *
8307195 ATATCCGGACTTGAGGTCCGCAGGCTA
1 ATATCCGGACATGAGATCCGCAGGCTA
8307222 CGTGCTGGGA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (39 bp):
ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
Found at i:8309050 original size:46 final size:46
Alignment explanation
Indices: 8308998--8309215 Score: 339
Period size: 46 Copynumber: 4.7 Consensus size: 46
8308988 TGCTATAGTG
* * * *
8308998 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
*** *
8309044 TCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
8309090 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
8309136 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
8309182 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
8309216 AGAGCACACT
Statistics
Matches: 161, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 157 0.98
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:8312914 original size:134 final size:134
Alignment explanation
Indices: 8312669--8312915 Score: 325
Period size: 134 Copynumber: 1.8 Consensus size: 134
8312659 TCTCACGGTC
* * * *
8312669 TGCTGATTTACGTTCACAACTGTCATTTTTAAAGCTCGGGGATTTACAATTAAGGCTTCAATTCA
1 TGCTAATTTACGATCACAACTGTCATTTTCAAAGCTCGAGGATTTACAATTAAGGCTTCAATTCA
* * *
8312734 TTGATTTACGATCATGAAAACTTAATTATGAGTTCGTTGATTTACGATCGCAACTACACTTGAAC
66 TTGATTTACGATCATGAAAACTTAATTAAGAGTTCATCGATTTACGATCGCAACTACACTTGAAC
8312799 ACTT
131 ACTT
* * * * * *
8312803 TGCTAATTTACGATCACAACTTTCATTTTCAAAGCTTGATGATTTATAA-TAACGGCTTTAGTTC
1 TGCTAATTTACGATCACAACTGTCATTTTCAAAGCTCGAGGATTTACAATTAA-GGCTTCAATTC
* * * *
8312867 TTTGATTTATGATCATGAATACTTCATTAAGAGTTCATCGATTTACGAT
65 ATTGATTTACGATCATGAAAACTTAATTAAGAGTTCATCGATTTACGAT
8312916 TGTAACTTTG
Statistics
Matches: 95, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
133 3 0.03
134 92 0.97
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (134 bp):
TGCTAATTTACGATCACAACTGTCATTTTCAAAGCTCGAGGATTTACAATTAAGGCTTCAATTCA
TTGATTTACGATCATGAAAACTTAATTAAGAGTTCATCGATTTACGATCGCAACTACACTTGAAC
ACTT
Found at i:8313556 original size:99 final size:99
Alignment explanation
Indices: 8313379--8313562 Score: 226
Period size: 99 Copynumber: 1.9 Consensus size: 99
8313369 ACCGTCCATT
* * * * * **
8313379 AATTTATGATCACAACTATCATTTTTGAAGCTTGTTGATTTACAAACACGACATCAGTTCATTTT
1 AATTTACGATCACAACTATCATTTTTAAAGCTCGTCGATTTACAAACACGACATCAATTCATTCA
* *
8313444 TTTATGATTATAAAAACTACATTAAGAGTTCCCC
66 TTTACGATCATAAAAACTACATTAAGAGTTCCCC
* * * *
8313478 AATTTACGATCTCAACTATCATTTTTAAAGCTCGTCGATTTACTATCAC-ATCTTCAATTCATTC
1 AATTTACGATCACAACTATCATTTTTAAAGCTCGTCGATTTACAAACACGA-CATCAATTCATTC
*
8313542 ATTTACGATCATAAACACTAC
65 ATTTACGATCATAAAAACTAC
8313563 TTGTTCACAA
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
98 1 0.01
99 69 0.99
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.38
Consensus pattern (99 bp):
AATTTACGATCACAACTATCATTTTTAAAGCTCGTCGATTTACAAACACGACATCAATTCATTCA
TTTACGATCATAAAAACTACATTAAGAGTTCCCC
Found at i:8313977 original size:536 final size:537
Alignment explanation
Indices: 8312998--8313964 Score: 1291
Period size: 536 Copynumber: 1.8 Consensus size: 537
8312988 ATGACTTTAT
* * * * * *
8312998 TTCATTGATTTACGATCTTGAACACTTCTTATTTCACAAGGAATGTAAAATTTCTAAACTCATTC
1 TTCATTCATTTACGATCATAAACACTACTTAGTTCACAAGGAATGTAAAATTTCTAAACTCAATC
* * * * *
8313063 TAAGCATGGCTAGAGATAATTTTCAACTAGCTACTTCTGACCTATTTACCCTTCAGACCAAGTTA
66 TAAGCAAGGCCAGAGATAATTTTCAACTAGCTAATTCTAACCTATTTACCCTTCAGACCAAATTA
* * * *
8313128 GATGCTAGAGATGATGAATATAGGCATATTGAGGAATAACTCAAAACTGACCTTGAAAGAAGGAC
131 AATGCTAGAGATGATGAATATAGACATATAGAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAC
* * ** *
8313193 GATAGTGTAATCAATTTTGTTACATTGTCTTTGTGAGGTTGAATTTACTTCTCTTCACCTTATGT
196 GATAGAGGAATCAATTTTGTTACATTGTCTTTGTGAGGTTGAAGCTACTTCTCTTCACCATATGT
* * * * * * * **
8313258 CTGAAATGAGGTTTGAAGTGGATCGACTTGCTCAAAAAATAAGGAACATTCTGAAAAGTTTTTGC
261 CTAAAATGAGGTTGGAAGTGGATCAACTTACTCAAAAAACAAGGAACACTCTGAAAAGCTTCAGC
* * * * *
8313323 AGATTTTCGATCACGACCTTCTACATACAGGATTTTACAAAATTTCACCGTCCATTAATTTATGA
326 AGATTTTCAATCACGACCTTCTACATAAAGGATTTTACAAAATCTCACCGTCCACTAATTTACGA
** * **
8313388 TCACAACTATCATTTTTGAAGCTTGTTGATTTACAAACACGACATCAGTTCATTTTTTTATGATT
391 GAACAACTATCATTTTTAAAGCTCATTGATTTACAAACACGACATCAGTTCATTTTTTTATGATT
8313453 ATAAAAACTACATTAAGAGTTCCCCAATTTACGATCTCAACTATCATTTTTAAAGCTCGTCGATT
456 ATAAAAACTACATTAAGAGTTCCCCAATTTACGATCTCAACTATCATTTTTAAAGCTCGTCGATT
8313518 TACTATCACATCTTCAA
521 TACTATCACATCTTCAA
*
8313535 TTCATTCATTTACGATCATAAACACTACTT-GTTCACAAGGAATGT-AAATTTGCTGAACT-AGA
1 TTCATTCATTTACGATCATAAACACTACTTAGTTCACAAGGAATGTAAAATTT-CTAAACTCA-A
* * **
8313597 TCTAAGCAAGGCCAGAGATAATTTTCAACTAGTTAATTCTAACCTCTTTGGCCTTCAGACCAAAT
64 TCTAAGCAAGGCCAGAGATAATTTTCAACTAGCTAATTCTAACCTATTTACCCTTCAGACCAAAT
* * * *
8313662 TAAATGCTAGTGATGATGAATATAGACGTGTAGAGGAAGAACTTAAAACTGACCTTGAAAGAAGG
129 TAAATGCTAGAGATGATGAATATAGACATATAGAGGAAGAACTCAAAACTGACCTTGAAAGAAGG
*
8313727 AGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTGAGGTTGAAGCTACTTCTCTTCACCATAT
194 ACGATAGAGGAATCAATTTTGTTACATTGTCTTTGTGAGGTTGAAGCTACTTCTCTTCACCATAT
* *
8313792 GTCTAAAATGAGGCTTGGAA-TGGATTAA-TCTACTTAAAAATACAAGGAACACTCTGAAAAGCT
259 GTCTAAAATGAGG-TTGGAAGTGGATCAACT-TACTCAAAAA-ACAAGGAACACTCTGAAAAGCT
* * ** * *
8313855 TCAGTAGA-TTTCTAATCACGACCTTCTACTTAAAGGATTTTA-TGAATCTCACGGTCCGCTAAT
321 TCAGCAGATTTTC-AATCACGACCTTCTACATAAAGGATTTTACAAAATCTCACCGTCCACTAAT
* * *
8313918 TTACGAGAACAACTGTTATTTTTAAAGCTCATTGATTTACGAACACG
385 TTACGAGAACAACTATCATTTTTAAAGCTCATTGATTTACAAACACG
8313965 GCTTCTGTTC
Statistics
Matches: 364, Mismatches: 60, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
535 8 0.02
536 275 0.76
537 81 0.22
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (537 bp):
TTCATTCATTTACGATCATAAACACTACTTAGTTCACAAGGAATGTAAAATTTCTAAACTCAATC
TAAGCAAGGCCAGAGATAATTTTCAACTAGCTAATTCTAACCTATTTACCCTTCAGACCAAATTA
AATGCTAGAGATGATGAATATAGACATATAGAGGAAGAACTCAAAACTGACCTTGAAAGAAGGAC
GATAGAGGAATCAATTTTGTTACATTGTCTTTGTGAGGTTGAAGCTACTTCTCTTCACCATATGT
CTAAAATGAGGTTGGAAGTGGATCAACTTACTCAAAAAACAAGGAACACTCTGAAAAGCTTCAGC
AGATTTTCAATCACGACCTTCTACATAAAGGATTTTACAAAATCTCACCGTCCACTAATTTACGA
GAACAACTATCATTTTTAAAGCTCATTGATTTACAAACACGACATCAGTTCATTTTTTTATGATT
ATAAAAACTACATTAAGAGTTCCCCAATTTACGATCTCAACTATCATTTTTAAAGCTCGTCGATT
TACTATCACATCTTCAA
Found at i:8316678 original size:571 final size:569
Alignment explanation
Indices: 8315590--8316955 Score: 1539
Period size: 571 Copynumber: 2.4 Consensus size: 569
8315580 AAGAAGGAAT
* * * * * *** *
8315590 GAATCAATTTTGTTACATTATCTTTATGAGGCTAAAGCTAC-TACTCTTTATTGTATGTCTGAAA
1 GAATCAATTTTGTTACATTGTCTTTGTGAAGCTGAAGCTACTTA-TCTTCACCATATGACTGAAA
* * * * **
8315654 CGAGGCTTGAAATGGATAGATCTG-TTAAAAAAAAAAGAAACTTTCTGAAAAGCTTTAGTTGGCT
65 CGAGGCTTGAAATGGATCGATCTGCTCAAAAAAAAAAGGAACATTCTGAAAAGCTTTAG-TGATT
* *
8315718 TACAATCACGACCTTCTACTTATAGGATTTTACGAATCTCACAGTCCGTTGATTTATGATCACAA
129 TACAATCACGACCTTCTACTTACAGGATTTTAAGAATCTCACAGTCCGTTGATTTATGATCACAA
* ** * * *
8315783 CTGTCATTTTTAAGGCTTACTGATTTATAATCACGGCTTCAGTTCATTGATTTACAATCACGAAC
194 CTGTCATTTTTAA-ACTTGTTGATTTACAATCACAGCTTCAGCTCATTGATTTACAATCACGAAC
* ** * *
8315848 ACTTCATTTAGAGTTTGCCGATTTACAATCACAACTCCAGTTAAACAGTTCGCTGATTTACTATC
258 ACTTCATTAAGAGTTCACCGATTTACAATCACAACTCCAGTTAAACAGTTCGCTGACTTACAATC
* *
8315913 ACAACTGTCATCTTTAAAGCTCATTAATTTCCAATAATGACTTTAGTTCATTGATTTACGATCTT
323 ACAACTATCATCTTTAAAGCTCACTAATTTCCAATAATGACTTTAGTTCATTGATTTACGATCTT
* * * * *** * *
8315978 GAGCACTTTTTGGTTGACAATGAATCTAAATTTGTTGAACTAGTCTTAAGCATGGCTAGAAATGA
388 GAACACTTCTTGGTTCACAAGGAATCTAAATTCACTAAACTAGTCTTAAGCATGGCTAGAAATAA
* ** ** * * *
8316043 TTTTCAACTAGCCAATTTTGTCCTCTCTTTCTTTTAGAGCAAGTTAGATGCTAGAGATGATGAAT
453 TTTTCAACTAGCCAATTCTAACCTCTCTACCCTTCAGACCAAGTTAGATGCTAGAGATGATGAAT
* * *
8316108 ATAGGCGTGTTGAAGAAGAACTCAAAATTGACATTGAAAGATAA-ATGATAGAG
518 ATAGGCGTGTTGAAGAAGAACTCAAAACTGACATT-AAA-AAAAGAGGATAGAG
*
8316161 GAATCGATTTTGTTACATTGTCTTTGTGAAGCTGAAGCTACTTATCTTCACCATACT-ACTGAAA
1 GAATCAATTTTGTTACATTGTCTTTGTGAAGCTGAAGCTACTTATCTTCACCATA-TGACTGAAA
* * *
8316225 CGAGGCTTGAAATGGATCGATCTGCTCAAAAAAACAAGGATCATTCTGAAAACCTTTAGCTGATT
65 CGAGGCTTGAAATGGATCGATCTGCTCAAAAAAAAAAGGAACATTCTGAAAAGCTTTAG-TGATT
* * * * *
8316290 TTCAATCACGACCTTTTACTTACAGGATTTT-TGAATCTCAC-GGCTCGTTGATTTACGATCACA
129 TACAATCACGACCTTCTACTTACAGGATTTTAAGAATCTCACAGTC-CGTTGATTTATGATCACA
** * *
8316353 TGTGTCATTTTTAAACTTTGTTGATTTACGATCACAGCTAT-AGCTCATTGATTTACAATCATGA
193 ACTGTCATTTTTAAAC-TTGTTGATTTACAATCACAGCT-TCAGCTCATTGATTTACAATCACGA
* * ***
8316417 ACACTTCATTAAGAGTTCATCGATTTACGATTGTAACTCC-GATTAAACAGTTCGCTGACTTACA
256 ACACTTCATTAAGAGTTCACCGATTTACAATCACAACTCCAG-TTAAACAGTTCGCTGACTTACA
** * ** * *
8316481 ATCGTAATTATCATCTTTAAAGCTTGCTGATTTCCAATCATGACTTTAGTTCATTGATTTACGAT
320 ATCACAACTATCATCTTTAAAGCTCACTAATTTCCAATAATGACTTTAGTTCATTGATTTACGAT
* * * * *
8316546 CTTGAACGCTTCTTGTTTCACAAGGAATGTAAATTCACTAAACTCGT-TCTAAGCATGGCTAGAG
385 CTTGAACACTTCTTGGTTCACAAGGAATCTAAATTCACTAAACTAGTCT-TAAGCATGGCTAGAA
* *
8316610 ATAATTTTCAACTAGCTACTTCTAACCTCTCTACCCTTCA-ATCCAAGTTAGATGCTAGAGATGA
449 ATAATTTTCAACTAGCCAATTCTAACCTCTCTACCCTTCAGA-CCAAGTTAGATGCTAGAGATGA
* * *
8316674 TGAATATAGGCGTGTTGAGGAATAACTCAAAACTGACCTTAAAAAAAGGAGGATAGAG
513 TGAATATAGGCGTGTTGAAGAAGAACTCAAAACTGACATTAAAAAAA-GAGGATAGAG
* * * * * * * * *
8316732 TAATCAATTTTGTTACATTGTCTTTGTGAGGCTGAATCTACTTCTTTTCACCTTATGCCTTAAAT
1 GAATCAATTTTGTTACATTGTCTTTGTGAAGCTGAAGCTACTTATCTTCACCATATGACTGAAAC
* * * * * *
8316797 GAGGTTTGAAATGGATCGATTTACTC-AAAAAATAAGGAAAATTCTGAAAAGCTTCAGTAGATTT
66 GAGGCTTGAAATGGATCGATCTGCTCAAAAAAAAAAGGAACATTCTGAAAAGCTTTAGT-GATTT
* * * * * * *
8316861 CCGATCACGACCTTCTACTTGCAGGATTTTACAAAATTTCACCGTCCTTTGATTTATGATCACAA
130 ACAATCACGACCTTCTACTTACAGGATTTTA-AGAATCTCACAGTCCGTTGATTTATGATCACAA
8316926 CTGTCATTTTTAAAGCTTGTTGATTTACAA
194 CTGTCATTTTTAAA-CTTGTTGATTTACAA
8316956 ACACGACATC
Statistics
Matches: 662, Mismatches: 116, Indels: 33
0.82 0.14 0.04
Matches are distributed among these distances:
569 4 0.01
570 67 0.10
571 476 0.72
572 112 0.17
573 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (569 bp):
GAATCAATTTTGTTACATTGTCTTTGTGAAGCTGAAGCTACTTATCTTCACCATATGACTGAAAC
GAGGCTTGAAATGGATCGATCTGCTCAAAAAAAAAAGGAACATTCTGAAAAGCTTTAGTGATTTA
CAATCACGACCTTCTACTTACAGGATTTTAAGAATCTCACAGTCCGTTGATTTATGATCACAACT
GTCATTTTTAAACTTGTTGATTTACAATCACAGCTTCAGCTCATTGATTTACAATCACGAACACT
TCATTAAGAGTTCACCGATTTACAATCACAACTCCAGTTAAACAGTTCGCTGACTTACAATCACA
ACTATCATCTTTAAAGCTCACTAATTTCCAATAATGACTTTAGTTCATTGATTTACGATCTTGAA
CACTTCTTGGTTCACAAGGAATCTAAATTCACTAAACTAGTCTTAAGCATGGCTAGAAATAATTT
TCAACTAGCCAATTCTAACCTCTCTACCCTTCAGACCAAGTTAGATGCTAGAGATGATGAATATA
GGCGTGTTGAAGAAGAACTCAAAACTGACATTAAAAAAAGAGGATAGAG
Found at i:8317513 original size:536 final size:537
Alignment explanation
Indices: 8316530--8317516 Score: 1327
Period size: 536 Copynumber: 1.8 Consensus size: 537
8316520 ATGACTTTAG
* * * * * * *
8316530 TTCATTGATTTACGATCTTGAACGCTTCTTGTTTCACAAGGAATGTAAATTCACTAAACTCGTTC
1 TTCATTCATTTACGATCATGAACACTACTTGATTCACAAGGAATGTAAATTCACTAAACTAGATC
* * * * *
8316595 TAAGCATGGCTAGAGATAATTTTCAACTAGCTACTTCTAACCTCTCTACCCTTCAATCCAAGTTA
66 TAAGCAAGGCTAAAGATAATTTTCAACTAGCTAATTATAACCTCTCTACCCTTCAATCCAAATTA
*
8316660 GATGCTAGAGATGATGAATATAGGCGTGTTGAGGAATAACTCAAAACTGACCTTAAAAAAAGGAG
131 GATGCTAGAGATGATGAATATAGACGTGTTGAGGAATAACTCAAAACTGACCTTAAAAAAAGGAG
* * * *
8316725 GATAGAGTAATCAATTTTGTTACATTGTCTTTGTGAGGCTGAATCTACTTCTTTTCACCTTATGC
196 GATAGAGTAATCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTTCTATTCACCATAAGC
* * * * * *
8316790 CTTAAATGAGGTTTGAAATGGATCGATTTACTCAAAAAATAAGGAAAATTCTGAAAAGCTTCAGT
261 CTAAAACGAGGCTTGAAATGGATCGATCTACTCAAAAAACAAGGAAAATTCTAAAAAGCTTCAGT
* ** * * ** * *
8316855 AGATTTCCGATCACGACCTTCTACTTGCAGGATTTTACAAAATTTCACCGTCCTTTGATTTATGA
326 AGATTTCCGATCACAACCTTCTACTTAAAAGATTTTACAAAATCTCACCGTCCACTAATTTACGA
*** * *
8316920 TCACAACTGTCATTTTTAAAGCTTGTTGATTTACAAACACGACATCAGTTTATTGATTTACGATA
391 TCACAACTGTCATTTTTAAAGCTCACTAATTTACAAACACGACATCAGTTCATTGATTTACGATA
8316985 ATAAAAGCTACATTAAGAATTCACCAATTTATGATCGCAACTATCATTTTTAAAGCTCATCAATT
456 ATAAAAGCTACATTAAGAATTCACCAATTTATGATCGCAACTATCATTTTTAAAGCTCATCAATT
8317050 TACTATCACAGCTTCAA
521 TACTATCACAGCTTCAA
** *
8317067 TTCATTCATTTACGATCATGAACACTACTT-ATTCACAAGGAATGTAAATTTGCTGAACTAGATC
1 TTCATTCATTTACGATCATGAACACTACTTGATTCACAAGGAATGTAAATTCACTAAACTAGATC
* * * * *
8317131 TAAGCAAGG-TCAAAGATGATTTTCAACTAGTTAATTATGACCTCTCTGCCCTTCAGA-GCAAAT
66 TAAGCAAGGCT-AAAGATAATTTTCAACTAGCTAATTATAACCTCTCTACCCTTCA-ATCCAAAT
* * *
8317194 TAGATGCTAGAGATGATGAATATAGACGTGTTGAGGAATAACTCAAAACTGACCTTGAAAGAATG
129 TAGATGCTAGAGATGATGAATATAGACGTGTTGAGGAATAACTCAAAACTGACCTTAAAAAAAGG
* *
8317259 AGGATAGA-TAAATCAATTTTGTTACATTGTCTTTGTGAGGTTGAAGCTACTTCTATTCGCCATA
194 AGGATAGAGT-AATCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTTCTATTCACCATA
* * * * * *
8317323 AGTCTAAAACGAGGCTTGAAATGGATTGATCTGCTTAAAAATACAATGAACATTCTAAAAAGCTT
258 AGCCTAAAACGAGGCTTGAAATGGATCGATCTACTCAAAAA-ACAAGGAAAATTCTAAAAAGCTT
* * *
8317388 CAGTAGATTTCTGATCACAACCTTCTATTTAAAAGATTTTAC-AAATCTCACGGTCCACTAATTT
322 CAGTAGATTTCCGATCACAACCTTCTACTTAAAAGATTTTACAAAATCTCACCGTCCACTAATTT
* * * * *
8317452 ACGATCACAACTGTTATTTTTAAAGCTCACTAATTTACGAACACGGCTTCCGTTCATTGATTTAC
387 ACGATCACAACTGTCATTTTTAAAGCTCACTAATTTACAAACACGACATCAGTTCATTGATTTAC
8317517 AGTTGTTGAC
Statistics
Matches: 382, Mismatches: 64, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
535 2 0.01
536 298 0.78
537 82 0.21
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (537 bp):
TTCATTCATTTACGATCATGAACACTACTTGATTCACAAGGAATGTAAATTCACTAAACTAGATC
TAAGCAAGGCTAAAGATAATTTTCAACTAGCTAATTATAACCTCTCTACCCTTCAATCCAAATTA
GATGCTAGAGATGATGAATATAGACGTGTTGAGGAATAACTCAAAACTGACCTTAAAAAAAGGAG
GATAGAGTAATCAATTTTGTTACATTGTCTTTGTGAGGCTGAAGCTACTTCTATTCACCATAAGC
CTAAAACGAGGCTTGAAATGGATCGATCTACTCAAAAAACAAGGAAAATTCTAAAAAGCTTCAGT
AGATTTCCGATCACAACCTTCTACTTAAAAGATTTTACAAAATCTCACCGTCCACTAATTTACGA
TCACAACTGTCATTTTTAAAGCTCACTAATTTACAAACACGACATCAGTTCATTGATTTACGATA
ATAAAAGCTACATTAAGAATTCACCAATTTATGATCGCAACTATCATTTTTAAAGCTCATCAATT
TACTATCACAGCTTCAA
Found at i:8319443 original size:11 final size:12
Alignment explanation
Indices: 8319424--8319460 Score: 58
Period size: 11 Copynumber: 3.1 Consensus size: 12
8319414 AAAGAAAAAA
8319424 AAGAGAGAGAGGG
1 AAGAGAGA-AGGG
8319437 AAGAGAGAAGGG
1 AAGAGAGAAGGG
8319449 -AGAGAGAAGGG
1 AAGAGAGAAGGG
8319460 A
1 A
8319461 GGGGGAAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 11 0.48
12 4 0.17
13 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (12 bp):
AAGAGAGAAGGG
Found at i:8319966 original size:8 final size:8
Alignment explanation
Indices: 8319953--8319977 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8319943 GGTGTTCGGC
8319953 GCAAGTGG
1 GCAAGTGG
8319961 GCAAGTGG
1 GCAAGTGG
8319969 GCAAGTGG
1 GCAAGTGG
8319977 G
1 G
8319978 GGGTAGGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.52, T:0.12
Consensus pattern (8 bp):
GCAAGTGG
Found at i:8320587 original size:46 final size:46
Alignment explanation
Indices: 8320489--8320590 Score: 123
Period size: 46 Copynumber: 2.2 Consensus size: 46
8320479 CCACTTCCTA
* * * * * * **
8320489 CCAATATAGGGAGGCAGGATCTGCTATCTTCGATCTATTTCGTTGC
1 CCAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
*
8320535 CGAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
1 CCAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
8320581 CCAATACAGG
1 CCAATACAGG
8320591 GAGATAGAGT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (46 bp):
CCAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
Found at i:8320735 original size:229 final size:229
Alignment explanation
Indices: 8320321--8320758 Score: 687
Period size: 229 Copynumber: 1.9 Consensus size: 229
8320311 TTAGGGAGAT
* * *
8320321 AAGACCTGAAATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTCATCGGCTTCAATG
1 AAGACCTGAAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTCATCAGCTTCAACG
** * * * * * *
8320386 TACTCCGTTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTGTTCCACTGCCAAA
66 TACTCCACTGTAGTCAGAGAGGTAAAATCTACCATCTTCGACCTGCAATCTATTCCACTGCCAAA
* *
8320451 TACAGGGAGATAGAGTCTGTTTTTCAATCCACTTCCTACCAATATAGGGAGGCAGGATCTGCTAT
131 TACAGGGAGATAAAGTCTGTTTTTCAATCCACTTCCTACCAATATAGGAAGGCAGGATCTGCTAT
8320516 CTTCGATCTATTTCGTTGCCGAATACAGGAAGGC
196 CTTCGATCTATTTCGTTGCCGAATACAGGAAGGC
* * * *
8320550 AAGATCTGCAATCTTCAATCTATTCCACTGCCCAATACAGGGAGATAGAGTTATCAGCTTCAACG
1 AAGACCTGAAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTCATCAGCTTCAACG
* * * *
8320615 TACTCTACTGTAGTCAGAGAGGTAAAGTCTACCGTCTTCGACCTGCAATCTATTCCACTGCTAAA
66 TACTCCACTGTAGTCAGAGAGGTAAAATCTACCATCTTCGACCTGCAATCTATTCCACTGCCAAA
8320680 TACAGGGAGATAAAGTCTGTTTTTCAATCCACTTCCTACCAATATAGGAAGGCAGGATCTGCTAT
131 TACAGGGAGATAAAGTCTGTTTTTCAATCCACTTCCTACCAATATAGGAAGGCAGGATCTGCTAT
8320745 CTTCGATCTATTTC
196 CTTCGATCTATTTC
8320759 ACATCAATAT
Statistics
Matches: 188, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
229 188 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (229 bp):
AAGACCTGAAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTCATCAGCTTCAACG
TACTCCACTGTAGTCAGAGAGGTAAAATCTACCATCTTCGACCTGCAATCTATTCCACTGCCAAA
TACAGGGAGATAAAGTCTGTTTTTCAATCCACTTCCTACCAATATAGGAAGGCAGGATCTGCTAT
CTTCGATCTATTTCGTTGCCGAATACAGGAAGGC
Found at i:8321030 original size:45 final size:45
Alignment explanation
Indices: 8320834--8321570 Score: 175
Period size: 46 Copynumber: 16.4 Consensus size: 45
8320824 GATCTGTAAT
* * *
8320834 CTTCAATCTATTCCACTGCCCGATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAGATACAGGGAGATAGAGTTATCAG
* * * * * ** *
8320879 CTTCAATGTACTCCACTG-TAG-TCACAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAGAT-ACAGGGAGATAGAGT-TATCAG
* * * * * ** * * *
8320924 CTTCGATCTGCTTCGCTGCCTA-ATACAGGAAGGCA-AGATCTGCAAT
1 CTTCAATCTACTCCACTGCC-AGATACAGGGAGATAGAGTTAT-C-AG
* *
8320970 CTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAGATACAGGGAGATAGAGTTATCAG
* * * * * ** *
8321015 CTTCAATGTACTCCACTG-TAG-T-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAGATACAGGGAGATAGAGT-TATCAG
* * * * * * ** * * *
8321058 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGATCTGCAAT
1 CTTCAATCTACTCCACTGCCAGATACAGGGAGATAGAGTTAT-C-AG
* *
8321104 CTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAGATACAGGGAGATAGAGTTATCAG
* * * * * * ** *
8321149 CTTCAATGTACTCCACTG-TAG-T-TAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAGATACAGGGAGATAGAGT-TATCAG
* * * * * * ** * * *
8321192 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGATCTGCAAT
1 CTTCAATCTACTCCACTGCCAGATACAGGGAGATAGAGTTAT-C-AG
* * *
8321238 CTTCAATCTATTCCACTGCCCGATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAGATACAGGGAGATAGAGTTATCAG
* * * * * ** *
8321283 CTTCAATGTACTCCACTG-TAG-TCACAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAGAT-ACAGGGAGATAGAGT-TATCAG
* * * * * ** * * *
8321328 CTTCGATCTGCTTCGCTGCCTA-ATACAGGAAGGCA-AGATCTGCAAT
1 CTTCAATCTACTCCACTGCC-AGATACAGGGAGATAGAGTTAT-C-AG
* *
8321374 CTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAGATACAGGGAGATAGAGTTATCAG
* * * * * * * *
8321419 CTTCCATGTACTCCACTG-TAG-T-CAGGGAGGTAAAATCTACCAT
1 CTTCAATCTACTCCACTGCCAGATACAGGGAGATAGAGT-TATCAG
* * * * * ** * * *
8321462 CTTCGATCTGCTTCGCTGCCTA-ATACAGGAAGGCA-AGATCTGCAAT
1 CTTCAATCTACTCCACTGCC-AGATACAGGGAGATAGAGTTAT-C-AG
* *
8321508 CTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAGATACAGGGAGATAGAGTTATCAG
*
8321553 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
8321571 TAGTCAGGGA
Statistics
Matches: 470, Mismatches: 181, Indels: 82
0.64 0.25 0.11
Matches are distributed among these distances:
42 32 0.07
43 51 0.11
44 39 0.08
45 142 0.30
46 182 0.39
47 24 0.05
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGCCAGATACAGGGAGATAGAGTTATCAG
Found at i:8321131 original size:270 final size:268
Alignment explanation
Indices: 8320809--8321637 Score: 1541
Period size: 270 Copynumber: 3.1 Consensus size: 268
8320799 ATTCGCCCCT
* * *
8320809 AATACAAGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCCGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
8320874 ATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
66 ATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
8320939 CTGCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGAT
129 CTGCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGAT
8321004 AGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGC
194 AGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGC
8321069 TTCGCTGCCA
259 TTCGCTGCCA
8321079 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
*
8321144 ATCGGCTTCAATGTACTCCACTGTAGTTAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
* *
8321209 GCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCCGATACAGGGAGATAG
131 GCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAG
8321274 AGTTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGC
196 AGTTATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTCGATCTGC
*
8321339 TTCGCTGCCT
259 TTCGCTGCCA
8321349 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
* *
8321414 ATCGGCTTCCATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCTTCGATCTGCTTCGCT
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
8321479 GCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAG
131 GCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAG
8321544 AGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT
196 AGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT
8321609 CGCTGCCA
261 CGCTGCCA
8321617 AATACAGGAAGGCAAGATCTG
1 AATACAGGAAGGCAAGATCTG
8321638 ATAACTTCAA
Statistics
Matches: 544, Mismatches: 13, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
268 193 0.35
270 351 0.65
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (268 bp):
AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
GCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAG
AGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT
CGCTGCCA
Found at i:8321330 original size:404 final size:404
Alignment explanation
Indices: 8320809--8321637 Score: 1604
Period size: 404 Copynumber: 2.1 Consensus size: 404
8320799 ATTCGCCCCT
* *
8320809 AATACAAGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCCGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCCGATACAGGGAGATAGAGTT
8320874 ATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
66 ATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
8320939 CTGCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGAT
131 CTGCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGAT
*
8321004 AGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGC
196 AGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCTTCGATCTGC
8321069 TTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGG
261 TTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGG
*
8321134 AGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTTAGGGAGGTAAAATCTGCCATCTTCGAT
326 AGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGAT
8321199 CTGCTTCGCTGCCA
391 CTGCTTCGCTGCCA
8321213 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCCGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCCGATACAGGGAGATAGAGTT
8321278 ATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
66 ATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
8321343 CTGCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGAT
131 CTGCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGAT
*
8321408 AGAGTTATCGGCTTCCATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCTTCGATCTGC
196 AGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCTTCGATCTGC
*
8321473 TTCGCTGCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGG
261 TTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGG
8321538 AGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGAT
326 AGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGAT
8321603 CTGCTTCGCTGCCA
391 CTGCTTCGCTGCCA
8321617 AATACAGGAAGGCAAGATCTG
1 AATACAGGAAGGCAAGATCTG
8321638 ATAACTTCAA
Statistics
Matches: 419, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
404 419 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (404 bp):
AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCCGATACAGGGAGATAGAGTT
ATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
CTGCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGAT
AGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCTTCGATCTGC
TTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGG
AGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGAT
CTGCTTCGCTGCCA
Found at i:8321647 original size:134 final size:134
Alignment explanation
Indices: 8320809--8321637 Score: 1532
Period size: 134 Copynumber: 6.2 Consensus size: 134
8320799 ATTCGCCCCT
* * *
8320809 AATACAAGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCCGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
8320874 ATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
66 ATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
*
8320939 CTGCCT
129 CTGCCA
8320945 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
8321010 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
8321075 GCCA
131 GCCA
8321079 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
*
8321144 ATCGGCTTCAATGTACTCCACTGTAGTTAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
8321209 GCCA
131 GCCA
*
8321213 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCCGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
8321278 ATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
66 ATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
*
8321343 CTGCCT
129 CTGCCA
8321349 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
* *
8321414 ATCGGCTTCCATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCTTCGATCTGCTTCGCT
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
*
8321479 GCCT
131 GCCA
8321483 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
8321548 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
8321613 GCCA
131 GCCA
8321617 AATACAGGAAGGCAAGATCTG
1 AATACAGGAAGGCAAGATCTG
8321638 ATAACTTCAA
Statistics
Matches: 677, Mismatches: 14, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
134 458 0.68
136 219 0.32
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (134 bp):
AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
GCCA
Found at i:8324831 original size:134 final size:134
Alignment explanation
Indices: 8324601--8325450 Score: 1549
Period size: 134 Copynumber: 6.3 Consensus size: 134
8324591 TTGAAGTTAT
*
8324601 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
8324666 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
66 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
8324731 ATTG
131 ATTG
8324735 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
* *
8324800 TACAGTGGAGTATATGGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
66 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
8324865 ATTG
131 ATTG
8324869 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTG
1 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCC--TG
*
8324934 ACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCGGGCAGTGGAATAGATTGA
64 ACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
8324999 AGATTG
129 AGATTG
*
8325005 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
8325070 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
66 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
8325135 ATTG
131 ATTG
*
8325139 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
8325204 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
66 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
8325269 ATTG
131 ATTG
8325273 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTG
1 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCC--TG
*
8325338 ACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCGGGCAGTGGAATAGATTGA
64 ACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
*
8325403 AGATTA
129 AGATTG
* * **
8325409 CAGATCTTGCCTTCTTGTATTAGG-GGCGAATTAGATCGAAGA
1 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGA
8325451 AAGCAGATCT
Statistics
Matches: 697, Mismatches: 15, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
134 458 0.66
135 15 0.02
136 224 0.32
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (134 bp):
CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
ATTG
Found at i:8325080 original size:270 final size:268
Alignment explanation
Indices: 8324601--8325450 Score: 1549
Period size: 270 Copynumber: 3.2 Consensus size: 268
8324591 TTGAAGTTAT
*
8324601 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
8324666 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
66 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
8324731 ATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCC
131 ATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCC
* *
8324796 TGACTACAGTGGAGTATATGGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATT
196 TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATT
8324861 GAAGATTG
261 GAAGATTG
8324869 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTG
1 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCC--TG
*
8324934 ACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCGGGCAGTGGAATAGATTGA
64 ACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
*
8324999 AGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTC
129 AGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTC
8325064 CCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGA
194 CCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGA
8325129 TTGAAGATTG
259 TTGAAGATTG
*
8325139 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
8325204 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
66 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
8325269 ATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCC
131 ATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCC
*
8325334 TGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCGGGCAGTGGAATAGA
196 --TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGA
*
8325399 TTGAAGATTA
259 TTGAAGATTG
* * **
8325409 CAGATCTTGCCTTCTTGTATTAGG-GGCGAATTAGATCGAAGA
1 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGA
8325451 AAGCAGATCT
Statistics
Matches: 563, Mismatches: 15, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
268 192 0.34
269 15 0.03
270 356 0.63
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (268 bp):
CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
ATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCC
TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATT
GAAGATTG
Found at i:8325123 original size:45 final size:45
Alignment explanation
Indices: 8324668--8325404 Score: 175
Period size: 46 Copynumber: 16.4 Consensus size: 45
8324658 TCCCTGACTA
* *
8324668 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGG
1 CAGTGGAGTAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
* ** * * * *
8324713 CAGTGGAATAGATTGAAGATTGCAGATCT-TGCCTTCCTGTAT-TAGG
1 CAGTGGAGTAGATTGAAG-CCG-ATAACTCTACCTCCCTGTATCT-GG
* * * * ** ** * * *
8324759 CAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAGTAGATTGAAGCCGATA-ACTCTACCTCCCTGTATCTGG
* * *
8324802 CAGTGGAGTATATGGAAGCCGATAACTCTATCTCCCTGTATCTGG
1 CAGTGGAGTAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
* ** * * * *
8324847 CAGTGGAATAGATTGAAGATTGCAGATCT-TGCCTTCCTGTAT-TAGG
1 CAGTGGAGTAGATTGAAG-CCG-ATAACTCTACCTCCCTGTATCT-GG
* * * * ** ** * * *
8324893 CAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGA-CT-A
1 CAGTGGAGTAGATTGAAGCCGATA-ACTCTACCTCCCTGT-ATCTGG
* * *
8324938 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCGGG
1 CAGTGGAGTAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
* ** * * * * *
8324983 CAGTGGAATAGATTGAAGATTGCAGATCT-TGCCTTCCTGTATTTGG
1 CAGTGGAGTAGATTGAAG-CCG-ATAACTCTACCTCCCTGTATCTGG
* * * * ** ** * * *
8325029 CAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAGTAGATTGAAGCCGATA-ACTCTACCTCCCTGTATCTGG
* *
8325072 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGG
1 CAGTGGAGTAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
* ** * * * * *
8325117 CAGTGGAATAGATTGAAGATTGCAGATCT-TGCCTTCCTGTATTTGG
1 CAGTGGAGTAGATTGAAG-CCG-ATAACTCTACCTCCCTGTATCTGG
* * * * ** ** * * *
8325163 CAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAGTAGATTGAAGCCGATA-ACTCTACCTCCCTGTATCTGG
* *
8325206 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGG
1 CAGTGGAGTAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
* ** * * * *
8325251 CAGTGGAATAGATTGAAGATTGCAGATCT-TGCCTTCCTGTAT-TAGG
1 CAGTGGAGTAGATTGAAG-CCG-ATAACTCTACCTCCCTGTATCT-GG
* * * * ** ** * * *
8325297 CAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGA-CT-A
1 CAGTGGAGTAGATTGAAGCCGATA-ACTCTACCTCCCTGT-ATCTGG
* * *
8325342 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCGGG
1 CAGTGGAGTAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
*
8325387 CAGTGGAATAGATTGAAG
1 CAGTGGAGTAGATTGAAG
8325405 ATTACAGATC
Statistics
Matches: 466, Mismatches: 185, Indels: 82
0.64 0.25 0.11
Matches are distributed among these distances:
42 33 0.07
43 50 0.11
44 39 0.08
45 147 0.32
46 173 0.37
47 24 0.05
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28
Consensus pattern (45 bp):
CAGTGGAGTAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
Found at i:8325350 original size:404 final size:404
Alignment explanation
Indices: 8324591--8325429 Score: 1617
Period size: 404 Copynumber: 2.1 Consensus size: 404
8324581 GCAGAGCTGG
8324591 TTGAAG-TTATCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGATTA-CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
8324655 ACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGA
65 ACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGA
8324720 ATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGA
130 ATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGA
*
8324785 TTTTACCTCCCTGACTACAGTGGAGTATATGGAAGCCGATAACTCTATCTCCCTGTATCTGGCAG
195 TTTTACCTCCCTGACTACAGTGGAGTACATGGAAGCCGATAACTCTATCTCCCTGTATCTGGCAG
8324850 TGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGG
260 TGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGG
8324915 CAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATC
325 CAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATC
8324980 GGGCAGTGGAATAGA
390 GGGCAGTGGAATAGA
*
8324995 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
8325060 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA
*
8325125 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGAT
131 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGAT
*
8325190 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
196 TTTACCTCCCTGACTACAGTGGAGTACATGGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
8325255 GGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGC
261 GGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGC
8325320 AGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCG
326 AGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCG
8325385 GGCAGTGGAATAGA
391 GGCAGTGGAATAGA
*
8325399 TTGAAGATTACAGATCTTGCCTTCTTGTATT
1 TTGAAGATTACAGATCTTGCCTTCCTGTATT
8325430 AGGGGCGAAT
Statistics
Matches: 428, Mismatches: 6, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
404 426 1.00
405 2 0.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (404 bp):
TTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA
TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGAT
TTTACCTCCCTGACTACAGTGGAGTACATGGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
GGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGC
AGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCG
GGCAGTGGAATAGA
Found at i:8325700 original size:46 final size:46
Alignment explanation
Indices: 8325645--8325749 Score: 129
Period size: 46 Copynumber: 2.3 Consensus size: 46
8325635 ATAACTCTAT
** * * * *
8325645 CTCCCTGTATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTGGGCAACGAAATAGATCGAAGATAGCAGATCCTGC
* *
8325691 CTTCCTGTATTCGGCAACGAAATAGATCGAAGATAGCAGATCCTGC
1 CTCCCTGTATTGGGCAACGAAATAGATCGAAGATAGCAGATCCTGC
*
8325737 CTCCCTATATTGG
1 CTCCCTGTATTGG
8325750 TAGGAAGTGG
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (46 bp):
CTCCCTGTATTGGGCAACGAAATAGATCGAAGATAGCAGATCCTGC
Found at i:8325892 original size:229 final size:229
Alignment explanation
Indices: 8325480--8325917 Score: 687
Period size: 229 Copynumber: 1.9 Consensus size: 229
8325470 ATATTGATGT
*
8325480 GAAATAGATCGAAGATAGCAGATCCTGCCTTCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
1 GAAATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
* * * * * *
8325545 TTTATCTCCCTGTATTTAGCAGTGGAATAGATTGCAGGTCGAAGACGGTAGACTTTACCTCCCTG
66 TCTATCTCCCTGTATTTAGCAGTGGAACAGATTGAAGATCAAAGACGGCAGACTTTACCTCCCTG
** * * *
8325610 AATACAGTAGAGTACGTTGAAGCTGATAACTCTATCTCCCTGTATTGGGCAGTGGAATAGATTGA
131 AATACAACAGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTGGGCAGTGGAATAGATTGA
8325675 AGATTGCAGATCTTGCCTTCCTGTATTCGGCAAC
196 AGATTGCAGATCTTGCCTTCCTGTATTCGGCAAC
8325709 GAAATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
1 GAAATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
* * *
8325774 TCTATCTCCCTGTATTTGGCAGTGGAACAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG
66 TCTATCTCCCTGTATTTAGCAGTGGAACAGATTGAAGATCAAAGACGGCAGACTTTACCTCCCTG
* * * *
8325839 ACTACAACGGAGTACATTGAAGCCGATGACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
131 AATACAACAGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTGGGCAGTGGAATAGATTGA
* *
8325904 AGATTTCAGGTCTT
196 AGATTGCAGATCTT
8325918 ATCTCCCTAA
Statistics
Matches: 188, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
229 188 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (229 bp):
GAAATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
TCTATCTCCCTGTATTTAGCAGTGGAACAGATTGAAGATCAAAGACGGCAGACTTTACCTCCCTG
AATACAACAGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTGGGCAGTGGAATAGATTGA
AGATTGCAGATCTTGCCTTCCTGTATTCGGCAAC
Done.