Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 240 of 343
Found at i:79089873 original size:21 final size:20
Alignment explanation
Indices: 79089860--79089907 Score: 87
Period size: 21 Copynumber: 2.4 Consensus size: 20
79089850 TTTATATAGA
79089860 TTTTTTAGTATTTTTTAAAG
1 TTTTTTAGTATTTTTTAAAG
79089880 TTTTTTTAGTATTTTTTAAAG
1 -TTTTTTAGTATTTTTTAAAG
79089901 TTTTTTA
1 TTTTTTA
79089908 AAAGAACTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 7 0.26
21 20 0.74
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (20 bp):
TTTTTTAGTATTTTTTAAAG
Found at i:79089874 original size:10 final size:10
Alignment explanation
Indices: 79089859--79089897 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
79089849 TTTTATATAG
79089859 ATTTTTTAGT
1 ATTTTTTAGT
79089869 ATTTTTTAAAGT
1 ATTTTTT--AGT
79089881 -TTTTTTAGT
1 ATTTTTTAGT
79089890 ATTTTTTA
1 ATTTTTTA
79089898 AAGTTTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 3 0.12
10 14 0.54
11 6 0.23
12 3 0.12
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (10 bp):
ATTTTTTAGT
Found at i:79089905 original size:11 final size:11
Alignment explanation
Indices: 79089870--79089911 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
79089860 TTTTTTAGTA
79089870 TTTTTTAAAGT
1 TTTTTTAAAGT
79089881 TTTTTT--AGT
1 TTTTTTAAAGT
79089890 ATTTTTTAAAGT
1 -TTTTTTAAAGT
*
79089902 TTTTTAAAAG
1 TTTTTTAAAG
79089912 AACTTTGTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
9 3 0.11
10 6 0.22
11 15 0.56
12 3 0.11
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.62
Consensus pattern (11 bp):
TTTTTTAAAGT
Found at i:79102869 original size:122 final size:122
Alignment explanation
Indices: 79102652--79102877 Score: 380
Period size: 122 Copynumber: 1.9 Consensus size: 122
79102642 GAATGTATTG
*
79102652 AAATGGTACCATTTTGGTTGCTAGGTGTGCATGAGGAAAGGGTGGCAAATTGGCTTTACAAATAG
1 AAATGATACCATTTTGGTTGCTAGGTGTGCATGAGGAAAGGGTGGCAAATTGGCTTTACAAATAG
79102717 CCTATTTTTATCCACACAGGCAAAGACACGGGCGTGTGTGACACACGGTCACGCTAC
66 CCTATTTTTATCCACACAGGCAAAGACACGGGCGTGTGTGACACACGGTCACGCTAC
* *
79102774 AAATGATATCATTTTGGTTGCTAGGTGTGCATGAGGAAAGGGTGGCAAATTGGCTTTGCAAATAG
1 AAATGATACCATTTTGGTTGCTAGGTGTGCATGAGGAAAGGGTGGCAAATTGGCTTTACAAATAG
* ** * *
79102839 CCTATTTTTATCTACATGGGTAGAGACACGGGCGTGTGT
66 CCTATTTTTATCCACACAGGCAAAGACACGGGCGTGTGT
79102878 CTCAGCCGTG
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
122 96 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (122 bp):
AAATGATACCATTTTGGTTGCTAGGTGTGCATGAGGAAAGGGTGGCAAATTGGCTTTACAAATAG
CCTATTTTTATCCACACAGGCAAAGACACGGGCGTGTGTGACACACGGTCACGCTAC
Found at i:79115419 original size:145 final size:144
Alignment explanation
Indices: 79115232--79115630 Score: 421
Period size: 145 Copynumber: 2.7 Consensus size: 144
79115222 TACTTAACCA
* * *
79115232 TAATTATATAATGTCAAATT-TATATATTATGATCTACCATAAAATTAGTTACACATTTAATGTT
1 TAATTATATAATG-CTAATTATATATATTATAATCTACCATAAAATTAGTTACATATTTAA-GTT
*
79115296 TAAAGTTACATATCATTAATATAAAAATATACATTATAATATCATAATTGTATATAGGGTTAGAT
64 T-AAGTTACA-ATCATTAATATAAAAATATACATTATAATATCATAATTGTATATAGGGTAAGAT
79115361 ATCATTAATAATCTACC-
127 ATCATTAATAATCTACCT
* * **
79115378 TAATTATATAACGCTAATTATAT-TATTATAATCTACCATAAATTTAGTTACATGCTTAGAGTTT
1 TAATTATATAATGCTAATTATATATATTATAATCTACCATAAAATTAGTTACATATTTA-AGTTT
** * ** * ** * * *
79115442 AAGTTTACAAATCAAAAACATAAAAACGTACATTATAAAAAAATAGTTGTATATGGGGTAATATA
65 AAG-TTAC-AATCATTAATATAAAAATATACATTATAATATCATAATTGTATATAGGGTAAGATA
*
79115507 TCATTTATAATCTACCT
128 TCATTAATAATCTACCT
* * * * * *
79115524 TAATTTTATAATGTTGATTATATATATTATAATATACCATAAAATTAGCTACATATTTGAGGTTT
1 TAATTATATAATGCTAATTATATATATTATAATCTACCATAAAATTAGTTACATATTT-AAGTTT
* *
79115589 ATGTTGA-AATCATTAATA-AAAGAATAAACATTATAATATCAT
65 AAGTT-ACAATCATTAATATAAA-AATATACATTATAATATCAT
79115631 TATACATTCA
Statistics
Matches: 204, Mismatches: 40, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
144 6 0.03
145 123 0.60
146 38 0.19
147 36 0.18
148 1 0.00
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.39
Consensus pattern (144 bp):
TAATTATATAATGCTAATTATATATATTATAATCTACCATAAAATTAGTTACATATTTAAGTTTA
AGTTACAATCATTAATATAAAAATATACATTATAATATCATAATTGTATATAGGGTAAGATATCA
TTAATAATCTACCT
Found at i:79118123 original size:237 final size:237
Alignment explanation
Indices: 79117682--79118152 Score: 610
Period size: 237 Copynumber: 2.0 Consensus size: 237
79117672 AAAAAATGTC
79117682 GTTAATTATCGATGATTACCAAGATTCAGCACTTGTTGCAAACTCGAAGATACATGTGACACAGG
1 GTTAATTATCGATGATTACCAAGATTCAGCACTTGTTGCAAACTCGAAGATACATGTGACACAGG
* *
79117747 TTTAGCTCAGACAAGTAACCTGATATCTTTTTAAAGGTTTAACTCAGAAAGTTAACCTGACATGT
66 TTTAGCTCAGACAAGTAACCTGATATCGTTTTAAAGGTTTAACTCAGAAAGGTAACCTGACATGT
* * *
79117812 ATATTTATAGCTTTGGCCAAACTATTTGATGTGTAGATAAAAGGTTTAGCCCGAACAGGTAACAT
131 ATATTTACAGCTTTAGCCAAACTATTTGATGTGTAGATAAAAGGTTTAGCCCGAACAAGTAACAT
*
79117877 GTCACAAATGGA-TCTGTTCAGCTCA-GACGAGCATTAGATATG
196 ATCACAAATGGATTC-GTTCAGCT-AGGACGAGCATTAGATATG
** * * *
79117919 GTTAATTA-CTGATGATTAGTAAGATTCAGCATTTGTTGCAGACTTGAAGATACATGTGACACAG
1 GTTAATTATC-GATGATTACCAAGATTCAGCACTTGTTGCAAACTCGAAGATACATGTGACACAG
* * * * * * *
79117983 GTTTTGCTC-GAACGAGTAACCTGATGTGGTTTTAAAGGTTTAGC-CTAGACAGGTAACTTGACA
65 GTTTAGCTCAG-ACAAGTAACCTGATATCGTTTTAAAGGTTTAACTC-AGAAAGGTAACCTGACA
* * * * * *
79118046 TGTATATTTACAGCTTTATCCAAGCTATTTGATGTGTTGATAAAAGGTTTAGTCTGGACAAGTAA
128 TGTATATTTACAGCTTTAGCCAAACTATTTGATGTGTAGATAAAAGGTTTAGCCCGAACAAGTAA
* * * *
79118111 CCTATTACAAATGGATTCGTTCATCTAGGATGAGCATTAGAT
193 CATATCACAAATGGATTCGTTCAGCTAGGACGAGCATTAGAT
79118153 GTGATTAGTA
Statistics
Matches: 201, Mismatches: 28, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
236 4 0.02
237 195 0.97
238 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (237 bp):
GTTAATTATCGATGATTACCAAGATTCAGCACTTGTTGCAAACTCGAAGATACATGTGACACAGG
TTTAGCTCAGACAAGTAACCTGATATCGTTTTAAAGGTTTAACTCAGAAAGGTAACCTGACATGT
ATATTTACAGCTTTAGCCAAACTATTTGATGTGTAGATAAAAGGTTTAGCCCGAACAAGTAACAT
ATCACAAATGGATTCGTTCAGCTAGGACGAGCATTAGATATG
Found at i:79118479 original size:27 final size:27
Alignment explanation
Indices: 79118441--79118498 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
79118431 TAATTATACA
79118441 CATTTATATACTTATGAACTTACTAAG
1 CATTTATATACTTATGAACTTACTAAG
79118468 CATTTATATACTTATGAACTTACTAAG
1 CATTTATATACTTATGAACTTACTAAG
79118495 CATT
1 CATT
79118499 AGTAATGCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.41
Consensus pattern (27 bp):
CATTTATATACTTATGAACTTACTAAG
Found at i:79125565 original size:22 final size:22
Alignment explanation
Indices: 79125518--79125565 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
79125508 TTGAAGTATT
* *
79125518 TCAATTTATATTTTCTTTGCAT
1 TCAATTTATATTTTATTTGCAA
*
79125540 TCAATTTATTTCTTTATTT-CAA
1 TCAATTTATAT-TTTATTTGCAA
79125562 TCAA
1 TCAA
79125566 GTGATTTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.27, C:0.15, G:0.02, T:0.56
Consensus pattern (22 bp):
TCAATTTATATTTTATTTGCAA
Found at i:79126084 original size:13 final size:14
Alignment explanation
Indices: 79126066--79126100 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
79126056 TTATCATTTG
79126066 TTTATTTTTC-TTA
1 TTTATTTTTCGTTA
79126079 TTTA-TTTTCGTTA
1 TTTATTTTTCGTTA
79126092 TTTATTTTT
1 TTTATTTTT
79126101 ATCTAAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 11 0.55
14 4 0.20
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTATTTTTCGTTA
Found at i:79127353 original size:18 final size:18
Alignment explanation
Indices: 79127330--79127364 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79127320 TTTTTACAAA
*
79127330 AATTCCTAAAGGATTTAT
1 AATTCCAAAAGGATTTAT
*
79127348 AATTCCAAAATGATTTA
1 AATTCCAAAAGGATTTA
79127365 AAACGAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (18 bp):
AATTCCAAAAGGATTTAT
Found at i:79127775 original size:22 final size:22
Alignment explanation
Indices: 79127735--79127776 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
79127725 AAGGGGGTTT
*
79127735 AAATTAAAAAAAACTAAAATTA
1 AAATTAAAAAAAACAAAAATTA
79127757 AAATTAAAACAAAA-AAAAAT
1 AAATTAAAA-AAAACAAAAAT
79127777 CAATGAGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (22 bp):
AAATTAAAAAAAACAAAAATTA
Found at i:79139523 original size:48 final size:48
Alignment explanation
Indices: 79139452--79139597 Score: 265
Period size: 48 Copynumber: 3.0 Consensus size: 48
79139442 CAAGATAAAT
79139452 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
79139500 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
79139548 ATATGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
79139596 AT
1 AT
79139598 GTGTGTATAT
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 95 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:79139790 original size:37 final size:37
Alignment explanation
Indices: 79139738--79139809 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
79139728 GGAAATATAT
79139738 TCCGGGTAAGACCCGA-AGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATA-ACTACGTGTGGAGATTTTG
* *
79139775 TCCGGGTAAGTCCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
79139810 CATCTGAGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 31 0.97
38 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:79140847 original size:42 final size:43
Alignment explanation
Indices: 79140750--79140907 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 43
79140740 AGTAAATACA
* * * * *
79140750 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* *
79140793 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCATATA-CG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCAAATATCG
* * *
79140835 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAA-GTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AAATCA-AATATCG
79140879 ATGCCAATGTCCCAGACGTGGTCTTACAC
1 ATGCCAATGTCCCAGACGTGGTCTTACAC
79140908 ACAAAACATA
Statistics
Matches: 97, Mismatches: 13, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
42 29 0.30
43 36 0.37
44 32 0.33
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:79140894 original size:86 final size:85
Alignment explanation
Indices: 79140745--79140907 Score: 213
Period size: 86 Copynumber: 1.9 Consensus size: 85
79140735 TGAAAAGTAA
* * * * *
79140745 ATACAATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAACATCGATGCCACTGTCCCAGAC
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAGAC
79140810 AG-GGTCTTACACGAAATCAT
66 -GTGGTCTTACACGAAATCAT
* * *
79140830 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAA-GTCGATGCCAATGTCCCAG
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGT-AAACA-AACATCGATGCCAATGTCCCAG
79140894 ACGTGGTCTTACAC
64 ACGTGGTCTTACAC
79140908 ACAAAACATA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 32 0.48
86 33 0.49
87 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (85 bp):
ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAGAC
GTGGTCTTACACGAAATCAT
Found at i:79140914 original size:44 final size:41
Alignment explanation
Indices: 79140750--79140915 Score: 145
Period size: 44 Copynumber: 3.9 Consensus size: 41
79140740 AGTAAATACA
* * *** *
79140750 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACCAAAAC-AA-ATCG
* * * *
79140793 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCATATACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACCAAAACAAAT-CG
* *
79140835 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACAC-CAAAACA-AA-TCG
79140879 ATGCCAATGTCCCAGACGTGGTCTTACACACAAAACA
1 ATGCCAATGTCCCAGACGTGGTCTTACAC-CAAAACA
79140916 TATATCAAAA
Statistics
Matches: 103, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
41 2 0.02
42 29 0.28
43 33 0.32
44 38 0.37
45 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.22
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACCAAAACAAATCG
Found at i:79148500 original size:44 final size:43
Alignment explanation
Indices: 79148359--79148522 Score: 142
Period size: 44 Copynumber: 3.8 Consensus size: 43
79148349 AGTAAATATA
* *
79148359 ATGCCAACGTCCTAGACGTGGTCTTACATGT--AATCAAACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAAATC-AA-ATCG
* * * *
79148402 ATGCC-ACTATCCCAGACAGGGTCTTACA--CAAAATCATATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAAAATCAAAT-CG
* *
79148444 ATGCTAATGTCCCAGACATGGTCTTACATGTAAAAT-AGAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAAATCA-AA-TCG
* *
79148488 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAAA
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAAA
79148523 CAGATATCGA
Statistics
Matches: 96, Mismatches: 16, Indels: 17
0.74 0.12 0.13
Matches are distributed among these distances:
41 2 0.02
42 27 0.28
43 27 0.28
44 39 0.41
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAAAATCAAATCG
Found at i:79156955 original size:15 final size:16
Alignment explanation
Indices: 79156915--79156957 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
79156905 TTAGGGACTC
79156915 TTTGGACTGTTTGATT
1 TTTGGACTGTTTGATT
*
79156931 TTT-AACTGTTT-ATT
1 TTTGGACTGTTTGATT
*
79156945 TTTGGATTGTTTG
1 TTTGGACTGTTTG
79156958 TCAGTTTAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 6 0.27
15 13 0.59
16 3 0.14
ACGTcount: A:0.14, C:0.05, G:0.21, T:0.60
Consensus pattern (16 bp):
TTTGGACTGTTTGATT
Found at i:79162532 original size:73 final size:71
Alignment explanation
Indices: 79162439--79162584 Score: 247
Period size: 73 Copynumber: 2.0 Consensus size: 71
79162429 GGAGGAACAA
* *
79162439 AGTTTACGAGGATTTGGCTCGTTCCCATCATTTTGTGTCGAGGTAAGTACATATGTGAATAATGT
1 AGTTTACAAGGATTTGGCTCGTTCCCATCATTTTGTGTCGAGATAAGTACATATGTGAATAATGT
79162504 GCCATTAT
66 --CATTAT
*
79162512 AGTTTACAAGGATTTTGCTCGTTCCCATCATTTTGTGTCGAGATAAGTACATATGTGAATAATGT
1 AGTTTACAAGGATTTGGCTCGTTCCCATCATTTTGTGTCGAGATAAGTACATATGTGAATAATGT
79162577 CATTAT
66 CATTAT
79162583 AG
1 AG
79162585 CTTATTTTAA
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
71 8 0.11
73 62 0.89
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (71 bp):
AGTTTACAAGGATTTGGCTCGTTCCCATCATTTTGTGTCGAGATAAGTACATATGTGAATAATGT
CATTAT
Found at i:79168439 original size:21 final size:22
Alignment explanation
Indices: 79168393--79168441 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
79168383 AGTAGAACTA
*
79168393 CCAATAATTTGCAGACAAGCTG
1 CCAATAAGTTGCAGACAAGCTG
* *
79168415 CCAATAAGTTGC-GATAAGTTG
1 CCAATAAGTTGCAGACAAGCTG
79168436 CCAATA
1 CCAATA
79168442 CTCCAACAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (22 bp):
CCAATAAGTTGCAGACAAGCTG
Found at i:79170412 original size:23 final size:22
Alignment explanation
Indices: 79170359--79170412 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
79170349 GATGCGGACA
*
79170359 ATCTCTTTTAATGATAAGTGGC
1 ATCTCTTTTAATGACAAGTGGC
* * *
79170381 ATTTCCTTTTAATGACATGTGGT
1 ATCT-CTTTTAATGACAAGTGGC
79170404 ACTCTCTTT
1 A-TCTCTTT
79170413 ATATTTTAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 3 0.12
23 20 0.80
24 2 0.08
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.46
Consensus pattern (22 bp):
ATCTCTTTTAATGACAAGTGGC
Found at i:79175499 original size:20 final size:20
Alignment explanation
Indices: 79175470--79175510 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
79175460 GAATGCCAAG
*
79175470 TGTGTGATAAAAATAATACA
1 TGTGTAATAAAAATAATACA
* *
79175490 TGTGTAATAAATATTATACA
1 TGTGTAATAAAAATAATACA
79175510 T
1 T
79175511 ACATTTGTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGTAATAAAAATAATACA
Found at i:79175590 original size:17 final size:17
Alignment explanation
Indices: 79175570--79175606 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
79175560 TATTTTATAT
79175570 TAATTAAATAAAGTAAA
1 TAATTAAATAAAGTAAA
*
79175587 TAATTAAATAAATTAAA
1 TAATTAAATAAAGTAAA
79175604 TAA
1 TAA
79175607 AGACAAGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATTAAATAAAGTAAA
Found at i:79175709 original size:5 final size:5
Alignment explanation
Indices: 79175699--79175736 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
79175689 TTTAAGAATA
79175699 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATA
79175737 ATTAAAACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATATT
Found at i:79177007 original size:51 final size:53
Alignment explanation
Indices: 79176922--79177040 Score: 161
Period size: 51 Copynumber: 2.3 Consensus size: 53
79176912 AAGTGTTGCC
*
79176922 TTACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTC-CGTACC-TTACTG
1 TTACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTCGCGTACCGCTACTG
* * * * *
79176973 TTACTGTTACTGTTCTAGATTTGTTTCGATGAGGTACTCTGTGTACCGCTACTG
1 TTACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTC-GCGTACCGCTACTG
79177027 TTACTGTTACTGTT
1 TTACTGTTACTGTT
79177041 ACTTCTACTA
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
51 35 0.59
53 5 0.08
54 19 0.32
ACGTcount: A:0.18, C:0.21, G:0.20, T:0.41
Consensus pattern (53 bp):
TTACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTCGCGTACCGCTACTG
Found at i:79177033 original size:6 final size:6
Alignment explanation
Indices: 79177022--79177062 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
79177012 TGTGTACCGC
*
79177022 TACTGT TACTGT TACTGT TACT-T CTACTAT TACTGT TACTG
1 TACTGT TACTGT TACTGT TACTGT -TACTGT TACTGT TACTG
79177063 ATACGGTGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
5 1 0.03
6 30 0.94
7 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.49
Consensus pattern (6 bp):
TACTGT
Found at i:79177196 original size:18 final size:18
Alignment explanation
Indices: 79177173--79177256 Score: 71
Period size: 18 Copynumber: 4.5 Consensus size: 18
79177163 GTAAAAAAGG
79177173 TACTGAATAACTGACTGT
1 TACTGAATAACTGACTGT
* * *
79177191 TACTGAATAATTTATTGT
1 TACTGAATAACTGACTGT
* *
79177209 TACTAAAAAAAAACTGA-TCGT
1 TACT---GAATAACTGACT-GT
*
79177230 TACTGAATAAATGACTGT
1 TACTGAATAACTGACTGT
79177248 TACTGAATA
1 TACTGAATA
79177257 GATGATTATT
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
18 37 0.73
19 1 0.02
20 1 0.02
21 12 0.24
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (18 bp):
TACTGAATAACTGACTGT
Found at i:79178472 original size:37 final size:37
Alignment explanation
Indices: 79178412--79178483 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 37
79178402 AGCTCAGATG
79178412 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
*
79178449 AAATCTCCACACGTAGTCT-TCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGT-TATCGGGTCTTACCCGGA
79178484 ATATATTTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
37 32 0.97
38 1 0.03
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
Found at i:79178682 original size:48 final size:48
Alignment explanation
Indices: 79178624--79178817 Score: 361
Period size: 48 Copynumber: 4.0 Consensus size: 48
79178614 ATATACACAC
* * *
79178624 ATCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
79178672 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
79178720 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
79178768 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
79178816 AT
1 AT
79178818 ATTTATCTTG
Statistics
Matches: 143, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 143 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:79189074 original size:15 final size:15
Alignment explanation
Indices: 79189039--79189081 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
79189029 TTTTTTATGT
* *
79189039 TGGATTTCTATATTT
1 TGGATTTCTTTATTA
*
79189054 TAGATTTCTTTATTA
1 TGGATTTCTTTATTA
*
79189069 TGGATTTCCTTAT
1 TGGATTTCTTTAT
79189082 CTTGAATTCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.21, C:0.09, G:0.12, T:0.58
Consensus pattern (15 bp):
TGGATTTCTTTATTA
Found at i:79204603 original size:50 final size:48
Alignment explanation
Indices: 79204473--79204613 Score: 148
Period size: 50 Copynumber: 2.9 Consensus size: 48
79204463 ACATTTGGGC
*
79204473 GATATGTGTGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAT
1 GATATGTG-G-GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAA
* * *
79204521 GAGATGT-GTC-AGTATAAGACCATGTCTGGGACATGGCATCGGC-ACA
1 GATATGTGGGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-A
* *
79204567 GATATGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGC
1 GATATGTG-G-GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
79204614 CTCAAGTTCG
Statistics
Matches: 77, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
44 8 0.10
45 16 0.21
46 15 0.19
48 7 0.09
49 1 0.01
50 30 0.39
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (48 bp):
GATATGTGGGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAA
Found at i:79208385 original size:39 final size:39
Alignment explanation
Indices: 79208342--79208475 Score: 184
Period size: 39 Copynumber: 3.5 Consensus size: 39
79208332 ATTCATTTTT
*
79208342 AAGCATATATCACATTACAT-ATATAATCACATAACATTC
1 AAGCATATATCACAATAC-TCATATAATCACATAACATTC
* *
79208381 AAGC--ATATCACAATACTCATACAATCACATAAAATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
*
79208418 AAGCATATATCACAATACTCATATAATCACTTAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
79208457 AAGTATATATCACGATACT
1 AAGCATATATCACAATACT
79208476 AAAAAACATG
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
36 1 0.01
37 32 0.38
39 51 0.61
ACGTcount: A:0.46, C:0.22, G:0.04, T:0.29
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:79208407 original size:37 final size:37
Alignment explanation
Indices: 79208348--79208464 Score: 155
Period size: 37 Copynumber: 3.1 Consensus size: 37
79208338 TTTTAAGCAT
*
79208348 ATATCACATTACAT-ATATAATCACATAACATTCAAGC
1 ATATCACAATAC-TCATATAATCACATAACATTCAAGC
* *
79208385 ATATCACAATACTCATACAATCACATAAAATTCAAGC
1 ATATCACAATACTCATATAATCACATAACATTCAAGC
* *
79208422 ATATATCACAATACTCATATAATCACTTAACATTCAAGT
1 --ATATCACAATACTCATATAATCACATAACATTCAAGC
79208461 ATAT
1 ATAT
79208465 ATCACGATAC
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
36 1 0.01
37 36 0.51
39 33 0.47
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.30
Consensus pattern (37 bp):
ATATCACAATACTCATATAATCACATAACATTCAAGC
Found at i:79221535 original size:21 final size:21
Alignment explanation
Indices: 79221509--79221550 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
79221499 TAACGCCTCA
79221509 TAAGGTGTCATCTTTAAACTC
1 TAAGGTGTCATCTTTAAACTC
79221530 TAAGGTGTCATCTTTAAACTC
1 TAAGGTGTCATCTTTAAACTC
79221551 GTCTGAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (21 bp):
TAAGGTGTCATCTTTAAACTC
Found at i:79230921 original size:37 final size:37
Alignment explanation
Indices: 79230840--79231018 Score: 189
Period size: 37 Copynumber: 4.8 Consensus size: 37
79230830 ACAAAGTTTG
* *
79230840 CTAGGCACATAGCATGAATATCAGCGGCACAAAGCCTA
1 CTAGGCACATAGCCTGAA-ATCACCGGCACAAAGCCTA
* * *
79230878 CTAGGCACATAGCCTGAAATCACCTGCACAATGCCTGG
1 CTAGGCACATAGCCTGAAATCACCGGCACAAAGCCT-A
* * *
79230916 C-AGGCACTTAACCCGAAATCACCGGCACAAAGCCTA
1 CTAGGCACATAGCCTGAAATCACCGGCACAAAGCCTA
** * * *
79230952 CTAGGCATTTAGCCCGAAATCACTGACACAAAGCCTA
1 CTAGGCACATAGCCTGAAATCACCGGCACAAAGCCTA
* * *
79230989 CTAGGCACATATCCTGAAATTACCAGCACA
1 CTAGGCACATAGCCTGAAATCACCGGCACA
79231019 TAACTAAATA
Statistics
Matches: 116, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
36 1 0.01
37 97 0.84
38 18 0.16
ACGTcount: A:0.35, C:0.31, G:0.18, T:0.17
Consensus pattern (37 bp):
CTAGGCACATAGCCTGAAATCACCGGCACAAAGCCTA
Found at i:79237946 original size:6 final size:6
Alignment explanation
Indices: 79237930--79237980 Score: 95
Period size: 6 Copynumber: 8.7 Consensus size: 6
79237920 ATTTATGTTA
79237930 TTTTC- TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
79237977 TTTT
1 TTTT
79237981 TATGTTTATT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 5 0.11
6 40 0.89
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:79243284 original size:16 final size:16
Alignment explanation
Indices: 79243263--79243295 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
79243253 TCTAAACTCA
79243263 AATTATGTTGAACCAT
1 AATTATGTTGAACCAT
79243279 AATTATGTTGAACCAT
1 AATTATGTTGAACCAT
79243295 A
1 A
79243296 TGTAGTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (16 bp):
AATTATGTTGAACCAT
Found at i:79260123 original size:38 final size:38
Alignment explanation
Indices: 79260071--79260244 Score: 147
Period size: 37 Copynumber: 4.6 Consensus size: 38
79260061 TTACATTGGT
* * *
79260071 ACAAAGCTTGCTAGGCATATAGCCCGAATATCACAGGT
1 ACAAAGCCTGCTAGGCACATAGCCCGAATATCACAGGC
* * *
79260109 ACAAAGCCTACTAGGCACATAGCCC-AAAATCACTGGC
1 ACAAAGCCTGCTAGGCACATAGCCCGAATATCACAGGC
* * * * *
79260146 AAAAAACCTGCTAGGCACATATCCTGAA-ATCACCGGC
1 ACAAAGCCTGCTAGGCACATAGCCCGAATATCACAGGC
* * * * *
79260183 ACAAAGGCTGCTAGACACATAGCCCAAATAACATTA-GC
1 ACAAAGCCTGCTAGGCACATAGCCCGAATATCA-CAGGC
* * *
79260221 ACAAATCCTGGTAGGCACAAAGCC
1 ACAAAGCCTGCTAGGCACATAGCC
79260245 TGGCAGACGC
Statistics
Matches: 106, Mismatches: 27, Indels: 6
0.76 0.19 0.04
Matches are distributed among these distances:
37 58 0.55
38 48 0.45
ACGTcount: A:0.38, C:0.28, G:0.18, T:0.16
Consensus pattern (38 bp):
ACAAAGCCTGCTAGGCACATAGCCCGAATATCACAGGC
Found at i:79260258 original size:54 final size:54
Alignment explanation
Indices: 79260180--79260298 Score: 159
Period size: 54 Copynumber: 2.2 Consensus size: 54
79260170 TGAAATCACC
* * * *
79260180 GGCACAAAGGCTGCTAGACACATAGCCCAAATAACATTAGCACAAATCCTGGTA
1 GGCACAAAGCCTGCTAGACACATAGCCCAAATAACATCAGCACAAAGCCTGCTA
* *
79260234 GGCACAAAGCCTGGC-AGACGCATAGCCTAAATAACATCAGCACAAAGCCTGCTA
1 GGCACAAAGCCT-GCTAGACACATAGCCCAAATAACATCAGCACAAAGCCTGCTA
*
79260288 GGCACATAGCC
1 GGCACAAAGCC
79260299 CTAAATCACT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 55 0.96
55 2 0.04
ACGTcount: A:0.37, C:0.29, G:0.20, T:0.14
Consensus pattern (54 bp):
GGCACAAAGCCTGCTAGACACATAGCCCAAATAACATCAGCACAAAGCCTGCTA
Found at i:79260296 original size:38 final size:38
Alignment explanation
Indices: 79260235--79260344 Score: 118
Period size: 37 Copynumber: 2.9 Consensus size: 38
79260225 ATCCTGGTAG
* *
79260235 GCACAAAGCCTGGC-AGACGCATAGCCTAAATAACATCA
1 GCACAAAGCCT-GCTAGGCACATAGCCTAAATAACATCA
* *
79260273 GCACAAAGCCTGCTAGGCACATAGCCCTAAATCAC-TGA
1 GCACAAAGCCTGCTAGGCACATAG-CCTAAATAACATCA
* **
79260311 -CACAAAGCCTACTAGGCACATAGCCCGAATAACA
1 GCACAAAGCCTGCTAGGCACATAGCCTAAATAACA
79260345 CCGCATTTCT
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
36 7 0.11
37 24 0.39
38 21 0.34
39 9 0.15
ACGTcount: A:0.38, C:0.31, G:0.17, T:0.14
Consensus pattern (38 bp):
GCACAAAGCCTGCTAGGCACATAGCCTAAATAACATCA
Found at i:79266167 original size:17 final size:16
Alignment explanation
Indices: 79266141--79266180 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
79266131 ATATATTGTG
79266141 AATT-TTAAAAATTAT
1 AATTATTAAAAATTAT
*
79266156 AATCTATTAAAAATTCT
1 AAT-TATTAAAAATTAT
79266173 AATTATTA
1 AATTATTA
79266181 TATAAGACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 6 0.27
17 13 0.59
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (16 bp):
AATTATTAAAAATTAT
Found at i:79268271 original size:29 final size:29
Alignment explanation
Indices: 79268211--79268271 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
79268201 TAGGGACCAG
* * **
79268211 ATCAAATTAGTCTTTCTATTATTAAATTA
1 ATCAAATTAGTCATTCTACTATTAAAAAA
* *
79268240 ATCAATTTAGTCATTGTACTATTAAAAAA
1 ATCAAATTAGTCATTCTACTATTAAAAAA
79268269 ATC
1 ATC
79268272 GAATAAGCTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (29 bp):
ATCAAATTAGTCATTCTACTATTAAAAAA
Found at i:79269949 original size:20 final size:20
Alignment explanation
Indices: 79269921--79269959 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
79269911 CTCTAATATA
79269921 TTTAAATTTAAATTTTAATC
1 TTTAAATTTAAATTTTAATC
* **
79269941 TTTATATTTTTATTTTAAT
1 TTTAAATTTAAATTTTAAT
79269960 ATAAATTAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTAAATTTAAATTTTAATC
Found at i:79269965 original size:32 final size:30
Alignment explanation
Indices: 79269919--79269978 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
79269909 CCCTCTAATA
* *
79269919 TATTTAAATTTAAATTTTAATCTTTATATTTT
1 TATTTAAATATAAA--TTAATCTCTATATTTT
*
79269951 TATTTTAATATAAATTAATCTCTATATT
1 TATTTAAATATAAATTAATCTCTATATT
79269979 GTTGAAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 13 0.52
32 12 0.48
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (30 bp):
TATTTAAATATAAATTAATCTCTATATTTT
Found at i:79272875 original size:88 final size:88
Alignment explanation
Indices: 79272782--79273057 Score: 220
Period size: 88 Copynumber: 3.1 Consensus size: 88
79272772 GGAGAAGAGA
* *
79272782 TTTGTAGCTTCGATCTACTTCGCTAAAACTTCAAGGAGTAAGAATTGGTAGTTTCAATCTGCTCC
1 TTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGGAGTAAGAATTGGTAGTTTCAATCTGCTCC
*
79272847 ACTACAACTTCGGGGAGATAAGG
66 ACTGCAACTTCGGGGAGATAAGG
* ** * * * * * *
79272870 TTTGTA-TTTTTATCCTACTCCACTGTAACTTC-AGAGAGATGAGGATT-GTGGCTTT-GATCTG
1 TTTGTAGCTTCGAT-CTACTCCGCTGAAACTTCAAG-GAG-TAAGAATTGGTAG-TTTCAATCTG
* * * ** *
79272931 CTCCAATGTAATTTTAGGGAGA-AGAGA
62 CTCCACTGCAACTTCGGGGAGATA-AGG
* * * * * *
79272958 TTTGTAGCTTCGATCTACTCCGCTGGAATTTAAAAGAGGTAAAAATTGGTAGTTTCAACCTGCTC
1 TTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGGA-GTAAGAATTGGTAGTTTCAATCTGCTC
*
79273023 CACTGCAACTTCGAGGAGATAAGG
65 CACTGCAACTTCGGGGAGATAAGG
* *
79273047 TTGGTGGCTTC
1 TTTGTAGCTTC
79273058 AATTTTCTTC
Statistics
Matches: 136, Mismatches: 41, Indels: 21
0.69 0.21 0.11
Matches are distributed among these distances:
87 7 0.05
88 79 0.58
89 49 0.36
90 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (88 bp):
TTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGGAGTAAGAATTGGTAGTTTCAATCTGCTCC
ACTGCAACTTCGGGGAGATAAGG
Found at i:79273079 original size:177 final size:176
Alignment explanation
Indices: 79272755--79273080 Score: 438
Period size: 177 Copynumber: 1.8 Consensus size: 176
79272745 CTTCACTTTA
* * *
79272755 CTCCAAAGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTAAAACTTCAAGGAG
1 CTCCAAAGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTAAAACTTAAAAGAG
* * * * * **
79272820 TAAGAATTGGTAGTTTCAATCTGCTCCACTACAACTTCGGGGAGATAAGGTTTGTATTTTTATCC
66 TAAAAATTGGTAGTTTCAACCTGCTCCACTACAACTTCGAGGAGATAAGGTTGGTACTTCAATCC
*
79272885 TACTCCACTGTAACTTCAGAGAGATGAGGATTGTGGCTTTGATCTG
131 TACTCCACTGCAACTTCAGAGAGATGAGGATTGTGGCTTTGATCTG
* * ** *
79272931 CTCCAATGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAATTTAAAAGAG
1 CTCCAAAGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTAAAACTTAAAAGA-
* *
79272996 GTAAAAATTGGTAGTTTCAACCTGCTCCACTGCAACTTCGAGGAGATAAGGTTGGTGGCTTCAAT
65 GTAAAAATTGGTAGTTTCAACCTGCTCCACTACAACTTCGAGGAGATAAGGTTGGT-ACTTCAAT
* * *
79273061 -TTTCTTCACTGCAACTTCAG
129 CCTACTCCACTGCAACTTCAG
79273081 GAAGATAAGA
Statistics
Matches: 127, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
176 56 0.44
177 67 0.53
178 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (176 bp):
CTCCAAAGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTAAAACTTAAAAGAG
TAAAAATTGGTAGTTTCAACCTGCTCCACTACAACTTCGAGGAGATAAGGTTGGTACTTCAATCC
TACTCCACTGCAACTTCAGAGAGATGAGGATTGTGGCTTTGATCTG
Found at i:79273218 original size:44 final size:45
Alignment explanation
Indices: 79273107--79273234 Score: 127
Period size: 45 Copynumber: 2.9 Consensus size: 45
79273097 ATAATTTGTA
* *
79273107 GCTTTAATTTGTTCCACTGCAACTTTAGGGAAATAAGATTCGCTAT
1 GCTTTAATTTGATCCACTGCAACTTTAGGGAGATAAGA-TCGCTAT
* * * * *
79273153 -CTTTAGTCTGCTCCGCTGCAACTTTAGGGAGATAAGA-C-TTAT
1 GCTTTAATTTGATCCACTGCAACTTTAGGGAGATAAGATCGCTAT
* * *
79273195 GGCTTTAATTTGATCCACTGCAACCTGAAGGAGATAAGAT
1 -GCTTTAATTTGATCCACTGCAACTTTAGGGAGATAAGAT
79273235 TTGCCATGAT
Statistics
Matches: 66, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
42 3 0.05
43 1 0.02
44 30 0.45
45 32 0.48
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (45 bp):
GCTTTAATTTGATCCACTGCAACTTTAGGGAGATAAGATCGCTAT
Found at i:79277720 original size:81 final size:85
Alignment explanation
Indices: 79277574--79277738 Score: 221
Period size: 81 Copynumber: 2.0 Consensus size: 85
79277564 GTTATGGAGG
** * * *
79277574 TGAAGGAAAAATCCCAAAGAATGAAAGAATCTAAGAATAATTATTTACATGGTATGATTATGAAT
1 TGAAGGAAAAATCCCAAAGAACAAAAGAATCTAAGAATAATTATTTACATAGTATAATTACGAAT
79277639 G-AAA-AATAAAAGAATATT
66 GAAAAGAATAAAAGAATATT
* * *
79277657 TGAAGG-AAAAT-CCAAAGAACAAAAGAATCTAAGAATAATTATTTGCGTAGTGTAATTACGAAT
1 TGAAGGAAAAATCCCAAAGAACAAAAGAATCTAAGAATAATTATTTACATAGTATAATTACGAAT
*
79277720 GAAAAGAATGAAAGAATAT
66 GAAAAGAATAAAAGAATAT
79277739 CTGCTCAAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
81 45 0.63
82 8 0.11
83 18 0.25
ACGTcount: A:0.52, C:0.07, G:0.17, T:0.25
Consensus pattern (85 bp):
TGAAGGAAAAATCCCAAAGAACAAAAGAATCTAAGAATAATTATTTACATAGTATAATTACGAAT
GAAAAGAATAAAAGAATATT
Found at i:79288699 original size:28 final size:27
Alignment explanation
Indices: 79288643--79288699 Score: 62
Period size: 28 Copynumber: 2.0 Consensus size: 27
79288633 ATTGAAAAAT
* *
79288643 AAAAATAAAAAATAGTTAAATTTAGAAA
1 AAAAATAAAAAATAG-AAAATTTACAAA
79288671 AAAAATAAAAAACTA-AAAATTTCACAAA
1 AAAAATAAAAAA-TAGAAAATTT-ACAAA
79288699 A
1 A
79288700 TATTTTGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 6 0.24
28 17 0.68
29 2 0.08
ACGTcount: A:0.70, C:0.05, G:0.04, T:0.21
Consensus pattern (27 bp):
AAAAATAAAAAATAGAAAATTTACAAA
Found at i:79290199 original size:22 final size:22
Alignment explanation
Indices: 79290159--79290200 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
79290149 CACAAAAATA
* *
79290159 TAAAAAACATTAAATTTATTTT
1 TAAAAAACATAAAAATTATTTT
*
79290181 TAAAAAATATAAAAATTATT
1 TAAAAAACATAAAAATTATT
79290201 ATAAAATTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAAAAACATAAAAATTATTTT
Found at i:79293765 original size:33 final size:34
Alignment explanation
Indices: 79293669--79293766 Score: 98
Period size: 33 Copynumber: 2.9 Consensus size: 34
79293659 GTTAATATTT
*
79293669 TAATATATGAAATATAAATTTTAAATATTTTTAAGTAA
1 TAATATAT-AAA-ATATATTTTAAATA--TTTAAGTAA
*
79293707 TAA-ATAT-TAAT-TATTTATAAA-ATTTAAGTAA
1 TAATATATAAAATATATTT-TAAATATTTAAGTAA
79293738 -AATATATAAAATATATTTTAAATATTTAA
1 TAATATATAAAATATATTTTAAATATTTAA
79293767 ATATAACCTT
Statistics
Matches: 52, Mismatches: 3, Indels: 15
0.74 0.04 0.21
Matches are distributed among these distances:
30 2 0.04
31 13 0.25
32 7 0.13
33 16 0.31
34 6 0.12
35 1 0.02
37 4 0.08
38 3 0.06
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (34 bp):
TAATATATAAAATATATTTTAAATATTTAAGTAA
Found at i:79293995 original size:12 final size:13
Alignment explanation
Indices: 79293973--79294001 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
79293963 TTTTAACTTC
79293973 TTTTCAGAAGTGT
1 TTTTCAGAAGTGT
79293986 TTTTCA-AAGTGT
1 TTTTCAGAAGTGT
79293998 TTTT
1 TTTT
79294002 AAAAAGCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.17, T:0.55
Consensus pattern (13 bp):
TTTTCAGAAGTGT
Found at i:79295109 original size:11 final size:9
Alignment explanation
Indices: 79295080--79295120 Score: 50
Period size: 8 Copynumber: 4.7 Consensus size: 9
79295070 AGCAGAACAT
79295080 AAGAAAG-A
1 AAGAAAGAA
79295088 AAGAAAGAA
1 AAGAAAGAA
79295097 AAGAGAAGAA
1 AAGA-AAGAA
*
79295107 AAAAAAG-A
1 AAGAAAGAA
79295115 AAGAAA
1 AAGAAA
79295121 ATGTATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 13 0.45
9 8 0.28
10 8 0.28
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (9 bp):
AAGAAAGAA
Found at i:79298544 original size:48 final size:48
Alignment explanation
Indices: 79298438--79298544 Score: 144
Period size: 48 Copynumber: 2.2 Consensus size: 48
79298428 TGTAATCCAC
* *
79298438 TGTACCTAATTTATATTACAAAATTTGTTCCAAGTTTTAATGTTGTAA
1 TGTATCTAATTTATATTACAAAATTTGTTCCAAGTTTTAATGTTGCAA
* ** *
79298486 TGTATTTAATTTATATTATTAAGTTTGTTCCAAGTTTTAATGTTGCAA
1 TGTATCTAATTTATATTACAAAATTTGTTCCAAGTTTTAATGTTGCAA
79298534 T-TAATCTAATT
1 TGT-ATCTAATT
79298545 AAATAAATAA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 1 0.02
48 50 0.98
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.50
Consensus pattern (48 bp):
TGTATCTAATTTATATTACAAAATTTGTTCCAAGTTTTAATGTTGCAA
Found at i:79299039 original size:12 final size:12
Alignment explanation
Indices: 79299032--79299065 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
79299022 TGGGCTCTGG
79299032 CTCTGGCTCGGC
1 CTCTGGCTCGGC
*
79299044 CTCTAGCTCGGC
1 CTCTGGCTCGGC
79299056 CTCTGGCTCG
1 CTCTGGCTCG
79299066 TATGCCTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.03, C:0.41, G:0.29, T:0.26
Consensus pattern (12 bp):
CTCTGGCTCGGC
Found at i:79299051 original size:30 final size:30
Alignment explanation
Indices: 79299007--79299064 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
79298997 GTATGCGACC
* * *
79299007 GCTCGGGCTATAGCTTGGGCTCTGGCTCTG
1 GCTCGGCCTATAGCTCGGCCTCTGGCTCTG
*
79299037 GCTCGGCCTCTAGCTCGGCCTCTGGCTC
1 GCTCGGCCTATAGCTCGGCCTCTGGCTC
79299065 GTATGCCTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.05, C:0.34, G:0.33, T:0.28
Consensus pattern (30 bp):
GCTCGGCCTATAGCTCGGCCTCTGGCTCTG
Found at i:79307387 original size:54 final size:54
Alignment explanation
Indices: 79307310--79307446 Score: 220
Period size: 54 Copynumber: 2.5 Consensus size: 54
79307300 TATGTCGTCG
*
79307310 TAGGAGATTTAGCCTGGACTGGTAATCCCGACAATACTGTATGAGTTTATATTA
1 TAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTGTATGAGTTTATATTA
* * *
79307364 TAGGGGATTTAGCCTGGATTGGTAATCCCGATAATACTTTATGAGTTTATATTA
1 TAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTGTATGAGTTTATATTA
**
79307418 CGGGGGATTTAGCCTGGACTGGTAATCCC
1 TAGGGGATTTAGCCTGGACTGGTAATCCC
79307447 TCCGTAAGAT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (54 bp):
TAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTGTATGAGTTTATATTA
Found at i:79314580 original size:46 final size:48
Alignment explanation
Indices: 79314438--79314605 Score: 147
Period size: 46 Copynumber: 3.6 Consensus size: 48
79314428 TATCCGTGCT
* * *
79314438 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTC-ATAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAATA-CC
* * * ** *
79314484 AATG-CATGTCTCAGACAT-GTCTTACACTAGC-TTACGTCT-AGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACT-CGTCTCA-ATACC
*
79314530 GATG-CATGTCCTAGACAT-GTCTTACACTAGCACTCGTCTCAATACC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAATACC
*
79314576 GATGCCATGTCCCGGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
79314606 GGCTCACACC
Statistics
Matches: 95, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
44 10 0.11
45 14 0.15
46 46 0.48
47 15 0.16
48 10 0.11
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAATACC
Found at i:79329578 original size:10 final size:10
Alignment explanation
Indices: 79329563--79329691 Score: 65
Period size: 10 Copynumber: 13.2 Consensus size: 10
79329553 AAAAGAAGCA
79329563 TTTTATAATT
1 TTTTATAATT
*
79329573 TTTTATTA-T
1 TTTTATAATT
**
79329582 TTTTATAAAA
1 TTTTATAATT
*
79329592 TTTTATAATA
1 TTTTATAATT
*
79329602 TTTAAT-ATT
1 TTTTATAATT
*
79329611 TTTATATGA-T
1 TTT-TATAATT
79329621 TTTTAT-ATT
1 TTTTATAATT
*
79329630 TTTTCCTAATT
1 TTTT-ATAATT
* *
79329641 TTTAATAA-A
1 TTTTATAATT
79329650 TTTTA-AA-T
1 TTTTATAATT
*
79329658 TTTTATTAATA
1 TTTTA-TAATT
* *
79329669 TTTAATATTT
1 TTTTATAATT
79329679 TTTTATAACTT
1 TTTTATAA-TT
79329690 TT
1 TT
79329692 ATTGATTATA
Statistics
Matches: 90, Mismatches: 19, Indels: 19
0.70 0.15 0.15
Matches are distributed among these distances:
8 8 0.09
9 25 0.28
10 42 0.47
11 15 0.17
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:79329587 original size:19 final size:19
Alignment explanation
Indices: 79329563--79329691 Score: 77
Period size: 19 Copynumber: 6.6 Consensus size: 19
79329553 AAAAGAAGCA
*
79329563 TTTTATAATTTTTTATTAT
1 TTTTATAATTTTTTATAAT
**
79329582 TTTTATAAAATTTTATAAT
1 TTTTATAATTTTTTATAAT
* *
79329601 ATTTA-ATATTTTTATATGAT
1 TTTTATA-ATTTTT-TATAAT
*
79329621 TTTTAT-ATTTTTTCCTAAT
1 TTTTATAATTTTTT-ATAAT
*
79329640 TTTTAATAA-ATTTTA-AAT
1 TTTT-ATAATTTTTTATAAT
* * *
79329658 TTTTATTAATATTTAATATTT
1 TTTTA-TAATTTTTTATA-AT
79329679 TTTTATAACTTTT
1 TTTTATAA-TTTT
79329692 ATTGATTATA
Statistics
Matches: 84, Mismatches: 15, Indels: 20
0.71 0.13 0.17
Matches are distributed among these distances:
17 1 0.01
18 12 0.14
19 42 0.50
20 19 0.23
21 10 0.12
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (19 bp):
TTTTATAATTTTTTATAAT
Found at i:79329596 original size:29 final size:28
Alignment explanation
Indices: 79329562--79329665 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 28
79329552 TAAAAGAAGC
79329562 ATTTTATAATTTTTTATTATTTTTATAAA
1 ATTTTATAA-TTTTTATTATTTTTATAAA
* * *
79329591 ATTTTATAATATTTAATATTTTTATATGA
1 ATTTTATAATTTTTATTATTTTTATA-AA
* * * *
79329620 TTTTTATATTTTTTCCTAATTTTTA-ATAA
1 ATTTTATAATTTTT-ATTATTTTTATA-AA
79329649 ATTTTA-AATTTTTATTA
1 ATTTTATAATTTTTATTA
79329666 ATATTTAATA
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
27 2 0.03
28 21 0.36
29 29 0.49
30 7 0.12
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (28 bp):
ATTTTATAATTTTTATTATTTTTATAAA
Found at i:79329622 original size:18 final size:19
Alignment explanation
Indices: 79329573--79329680 Score: 57
Period size: 18 Copynumber: 5.7 Consensus size: 19
79329563 TTTTATAATT
* *
79329573 TTTTATTATTTTTATAAAA
1 TTTTAATATTTTTATAATA
* *
79329592 TTTT-ATAATATT-TAATA
1 TTTTAATATTTTTATAATA
* *
79329609 TTTTTATATGATTTTTATATTT
1 -TTTTA-AT-ATTTTTATAATA
*
79329631 TTTCCTAAT-TTTTAATAA-A
1 TTT--TAATATTTTTATAATA
79329650 TTTTAA-ATTTTTATTAATA
1 TTTTAATATTTTTA-TAATA
79329669 -TTTAATATTTTT
1 TTTTAATATTTTT
79329681 TTATAACTTT
Statistics
Matches: 66, Mismatches: 12, Indels: 22
0.66 0.12 0.22
Matches are distributed among these distances:
17 12 0.18
18 17 0.26
19 14 0.21
20 9 0.14
21 7 0.11
22 5 0.08
23 2 0.03
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (19 bp):
TTTTAATATTTTTATAATA
Found at i:79331077 original size:18 final size:20
Alignment explanation
Indices: 79331052--79331097 Score: 69
Period size: 18 Copynumber: 2.4 Consensus size: 20
79331042 CAACAATAAT
79331052 ATAAAATAATGA-TATGTAC
1 ATAAAATAATGACTATGTAC
*
79331071 A-AAAATAATTACTATGTAC
1 ATAAAATAATGACTATGTAC
79331090 ATAAAATA
1 ATAAAATA
79331098 TACACTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 9 0.38
19 9 0.38
20 6 0.25
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (20 bp):
ATAAAATAATGACTATGTAC
Found at i:79331228 original size:33 final size:34
Alignment explanation
Indices: 79331152--79331229 Score: 90
Period size: 32 Copynumber: 2.3 Consensus size: 34
79331142 ATTTGTAATA
*
79331152 ATAATATATACACAATATGTATTTTAAAATATATAT
1 ATAATATAT--ACAATATGTATTTTAAAATATATAC
*
79331188 AT-GTATATACAATA-GTA-TTTAAGAATATATAC
1 ATAATATATACAATATGTATTTTAA-AATATATAC
79331220 ATAATATATA
1 ATAATATATA
79331230 TAAAATACAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
31 5 0.14
32 13 0.35
33 12 0.32
35 5 0.14
36 2 0.05
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (34 bp):
ATAATATATACAATATGTATTTTAAAATATATAC
Found at i:79331236 original size:11 final size:11
Alignment explanation
Indices: 79331191--79331253 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
79331181 TATATATATG
*
79331191 TATATACAATA
1 TATATAAAATA
*
79331202 GTATTTAAGAATA
1 -TATATAA-AATA
* *
79331215 TATACATAATA
1 TATATAAAATA
79331226 TATATAAAATA
1 TATATAAAATA
* *
79331237 CATATAATATA
1 TATATAAAATA
79331248 TATATA
1 TATATA
79331254 CGTATTAGAA
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
11 27 0.68
12 9 0.22
13 4 0.10
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (11 bp):
TATATAAAATA
Found at i:79331930 original size:11 final size:11
Alignment explanation
Indices: 79331914--79331938 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79331904 GTTTTGTATA
79331914 TATATTTTTAT
1 TATATTTTTAT
79331925 TATATTTTTAT
1 TATATTTTTAT
79331936 TAT
1 TAT
79331939 GATGTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TATATTTTTAT
Found at i:79332009 original size:17 final size:17
Alignment explanation
Indices: 79331989--79332027 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
79331979 AAATAAAATA
*
79331989 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
79332006 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
79332023 AAAAT
1 AAAAT
79332028 CACATTTGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:79332354 original size:30 final size:28
Alignment explanation
Indices: 79332320--79332380 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
79332310 GTGGCTAGGG
79332320 TTTCTTGATTATTTTTTTGGGGGTTAGGTT
1 TTTCTT-ATTATTTTTTT-GGGGTTAGGTT
* * *
79332350 TTTCTTTTTCTTTTTTTTGGGTTAGGTT
1 TTTCTTATTATTTTTTTGGGGTTAGGTT
79332378 TTT
1 TTT
79332381 TTTGGAGGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 13 0.46
29 9 0.32
30 6 0.21
ACGTcount: A:0.07, C:0.05, G:0.21, T:0.67
Consensus pattern (28 bp):
TTTCTTATTATTTTTTTGGGGTTAGGTT
Found at i:79333409 original size:77 final size:77
Alignment explanation
Indices: 79333293--79333456 Score: 256
Period size: 77 Copynumber: 2.1 Consensus size: 77
79333283 TGAAAAACGA
* * * ** *
79333293 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
79333358 TTTGAAAGACAG
66 TTTGAAAGACAG
*
79333370 AAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
*
79333435 TTTGAAAGGCAG
66 TTTGAAAGACAG
79333447 AAATTGAAAA
1 AAATTGAAAA
79333457 ATGAAAATTG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
77 79 1.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (77 bp):
AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
TTTGAAAGACAG
Found at i:79333454 original size:91 final size:90
Alignment explanation
Indices: 79333370--79333545 Score: 248
Period size: 91 Copynumber: 1.9 Consensus size: 90
79333360 TGAAAGACAG
* * *
79333370 AAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
1 AAATTGAAAACACCTCAGCGCGTGA-CCTAAGGCTCAACTCACCGCTCGCAATATGAGTCGATTT
79333434 TTTTGA-AAGGCAGAAATTGAAAAATGA
65 TTTTGACAA--CAGAAATTGAAAAATGA
* * * *
79333461 AAATTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATATGAGTTGATTTT
1 AAATTGAAAACACCTCAGCGCGTGACCTAAGGCTCAACTCACCGCTCGCAATATGAGTCGATTTT
79333526 TTTGACAACAGAAATTGAAA
66 TTTGACAACAGAAATTGAAA
79333546 TTACCTCAGC
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
90 14 0.18
91 60 0.79
92 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (90 bp):
AAATTGAAAACACCTCAGCGCGTGACCTAAGGCTCAACTCACCGCTCGCAATATGAGTCGATTTT
TTTGACAACAGAAATTGAAAAATGA
Found at i:79333585 original size:74 final size:75
Alignment explanation
Indices: 79333461--79334327 Score: 515
Period size: 74 Copynumber: 10.9 Consensus size: 75
79333451 TGAAAAATGA
*
79333461 AAATTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATATGAGTTGATTTT
1 AAATTGAAAACACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTT
79333526 TTTGACAACAG
65 TTTGACAACAG
** * *
79333537 AAATTGAAATTACCTCAGCGTGT-CCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAACACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGA--TTT
79333601 TTTTGA-AAGGCAG
64 TTTTGACAA--CAG
** *** * * *
79333614 AAATTGAAAA-A-CGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGC
1 AAATTGAAAACACCTCAGCGTG----TACCT----GAG-G--CTCA-ACTC-A----CCGCTCGC
*
79333677 AATACGAGTTGATTTTTTTGACAACAG
49 AATATGAGTTGATTTTTTTGACAACAG
** *
79333704 AAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAACACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGA--TTT
*
79333768 TTTTGAAAGGCAGAAATTG
64 TTTTG--A--CA-ACA--G
* * **
79333787 AAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACAAGTTGATTT
1 -AAATTGAAAACACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTT
* *
79333852 TTTTGAAAATAG
64 TTTTGACAACAG
** *
79333864 AAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAACACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGA-TTTT
*
79333928 TTTTA-AAGGCAG
65 TTTGACAA--CAG
* *** * * *
79333940 AAATTGAAAA-A--TGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCG
1 AAATTGAAAACACCT-CAGCGTG----TACCT----GAG-G--CTCA-ACTC-AC-CG---CTCG
*
79334002 CAATACGAGTTGATTTTTTTTGACAACAG
48 CAATATGAGTTGA-TTTTTTTGACAACAG
* *
79334031 AAATTGAAAATACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
1 AAATTGAAAACACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTT
*
79334094 TTGAAACATACGAA
66 TTG--ACA-AC-AG
* * * * * * *
79334108 AAATTGACAATACTTCAACGTGT-CCCGAGGCTCAACTCACCTCACCTCTCGCAATACGAGTTGA
1 AAATTGAAAACACCTCAGCGTGTACCTGAGGCTC-A---A-CTCACCGCTCGCAATATGAGTTGA
79334172 TTTTTTTGACAACAG
61 TTTTTTTGACAACAG
* * *
79334187 AAATTGAAAATACCTCAGCATGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
1 AAATTGAAAACACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTT
*
79334250 TTGAAACATACGAA
66 TTG--ACA-AC-AG
* * * * *
79334264 AAATTGACAATACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTT
1 AAATTGAAAACACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTT
79334328 GAAATAAAAC
Statistics
Matches: 634, Mismatches: 79, Indels: 154
0.73 0.09 0.18
Matches are distributed among these distances:
73 15 0.02
74 111 0.18
75 38 0.06
76 76 0.12
77 100 0.16
78 10 0.02
79 40 0.06
80 14 0.02
81 9 0.01
82 25 0.04
83 13 0.02
84 35 0.06
85 1 0.00
86 35 0.06
87 9 0.01
88 9 0.01
89 3 0.00
90 12 0.02
91 23 0.04
92 32 0.05
93 23 0.04
94 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (75 bp):
AAATTGAAAACACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTT
TTGACAACAG
Found at i:79333651 original size:167 final size:165
Alignment explanation
Indices: 79333062--79334251 Score: 1475
Period size: 167 Copynumber: 7.2 Consensus size: 165
79333052 GCGTGAGCCA
*** * *
79333062 AGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGAAAAATATAAATTGAAGAAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTG-A-AA-AAG
*** * * * * *
79333123 AAAAAAAGAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTT-ATTT
63 AAATTGA-AAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
* * * * *
79333187 TTTTGAAAGAAAGAAATTGAAAATAGCTCAGCGCGTGAGCC-A
127 TTTTGACA-ACAGAAATTGAAAATACCTCA--GCGTG-TCCTG
* * *
79333229 AGGCTCAACTCACCTATCGTAATATGAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAA-G-A
* * * *
79333294 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
64 AATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTT
* * * *
79333359 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-A
129 TTGACA-ACAGAAATTGAAAATACCTCA--GCGTG-TCCTG
*
79333399 AGGCTCAACTCACCTCTCGCAATATGAGTCGA--TTTTTTTGAAAGGCAGAAATTGAAAAATGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAA-G-A
* * *
79333462 AATTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATATGAGTTGATTTTT
64 AATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTT
*
79333527 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
129 TTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
*
79333564 AGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAA--GA
* *
79333629 AATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTT
64 AATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTT
*
79333694 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
129 TTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
79333731 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTG----A-AAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAAGAAA
* *
79333791 TTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACAAGTTGATTTTTTT
66 TTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTT
* * *
79333856 GAAAATAGAAATTGAAATTACCTCAGCGTGTCCTG
131 GACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
79333891 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTT-AAAGGCAGAAATTGAAAAATGGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAA--GA
*
79333955 AATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTT
64 AATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTTT
79334020 TTTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
128 TTTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
**
79334058 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGAAA--C----A-T-ACGAA-AAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAAGAAA
* * * * *
79334111 TTGACAATACTTCAACGTGT--CCCGAGGCTCAACTCACCTCACCTCTCGCAATACGAGTTGATT
66 TTGAAAATACCTCAGCGTGTGACCTGAGGCTC-A---A-CTCGCCTCTCGCAATACGAGTTGATT
*
79334174 TTTTTGACAACAGAAATTGAAAATACCTCAGCATGTCCTG
126 TTTTTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
79334214 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
79334252 GAAACATACG
Statistics
Matches: 941, Mismatches: 54, Indels: 64
0.89 0.05 0.06
Matches are distributed among these distances:
152 9 0.01
153 1 0.00
154 19 0.02
156 74 0.08
157 26 0.03
158 1 0.00
159 18 0.02
160 140 0.15
163 3 0.00
164 8 0.01
165 38 0.04
166 58 0.06
167 301 0.32
168 98 0.10
169 51 0.05
170 80 0.09
171 16 0.02
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (165 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAAGAAA
TTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTT
GACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
Found at i:79333907 original size:327 final size:325
Alignment explanation
Indices: 79333131--79334251 Score: 1555
Period size: 327 Copynumber: 3.4 Consensus size: 325
79333121 AAAAAAAAAG
* * * * *
79333131 AAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTT-ATTTTTTTGAAA
1 AAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTTTGAAA
* * * * * * *
79333195 GAAAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTATCGTAATATGAGTC
66 -ACAGAAATTGAAAATACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
79333259 GATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTGAAAATACCTCGGCGTGTGATCTGAG
127 GATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAG
* * * *
79333324 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGC
192 GCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACA-ACAGAAATTGAAAATACCTCA--
* * *
79333389 GCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAAATTG
254 GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAA-T-
79333453 AAAAATGAAAATTGA
316 -----TGAAAATTGA
* * * *
79333468 AAACACCTCAGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATATGAGTTGATTTTTTTGACA
1 AAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTTTGAAA
* *
79333533 ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATT
66 ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
79333598 TTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTC
131 TTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTC
* *
79333663 AACTCGCCGCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTC
196 AACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAAATACCTCAGCGTGTC
79333728 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAATT
261 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGGCAGAAATTGAAAATT
79333793 GA
324 GA
* *
79333795 AAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACAAGTTGATTTTTTTGAAA
1 AAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTTTGAAA
* *
79333860 ATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
66 ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
79333925 TTTTTTT-AAAGGCAGAAATTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTC
131 TTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTC
79333989 AACTCGCCTCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGAAAATACCTCAGCGTGT
196 AACTCGCCTCTCGCAATACGAGTTGA-TTTTTTTGACAACAGAAATTGAAAATACCTCAGCGTGT
* *
79334054 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA--C--ATA-CGAAAAATT
260 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTG-AAAATT
79334113 GA
324 GA
* * * * *
79334115 CAATACTTCAACGTGT--CCCGAGGCTCAACTCACCTCACCTCTCGCAATACGAGTTGATTTTTT
1 AAATACCTCAGCGTGTGACCTGAGGCTC-A---A-CTCACCGCTCGCAATACGAGTTGATTTTTT
* *
79334178 TGACAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
61 TGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
79334243 TGATTTTTT
126 TGATTTTTT
79334252 GAAACATACG
Statistics
Matches: 723, Mismatches: 49, Indels: 38
0.89 0.06 0.05
Matches are distributed among these distances:
318 9 0.01
319 2 0.00
320 23 0.03
322 2 0.00
323 97 0.13
324 10 0.01
326 81 0.11
327 214 0.30
331 2 0.00
332 36 0.05
333 1 0.00
334 40 0.06
335 131 0.18
337 64 0.09
338 11 0.02
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (325 bp):
AAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTTTGAAA
ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTC
AACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAAATACCTCAGCGTGTC
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAATTGA
Found at i:79334041 original size:90 final size:88
Alignment explanation
Indices: 79333854--79334042 Score: 272
Period size: 92 Copynumber: 2.1 Consensus size: 88
79333844 GTTGATTTTT
* *
79333854 TTGAAAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAG
*
79333919 TTGATTTTTTTTTAAAGGCAGAAA
66 TTGATTTTTTTTGAAA-GCAGAAA
* * *
79333943 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
1 TTG-AAAATAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATAC
79334008 GAGTTGATTTTTTTTGACAA-CAGAAA
63 GAGTTGATTTTTTTTGA-AAGCAGAAA
79334034 TTGAAAATA
1 TTGAAAATA
79334043 CCTCAGCGTG
Statistics
Matches: 89, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
89 3 0.03
90 32 0.36
91 9 0.10
92 43 0.48
93 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (88 bp):
TTGAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAG
TTGATTTTTTTTGAAAGCAGAAA
Found at i:79334112 original size:77 final size:75
Alignment explanation
Indices: 79333954--79334331 Score: 474
Period size: 77 Copynumber: 4.9 Consensus size: 75
79333944 TGAAAAATGG
* * *
79333954 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*** *
79334019 TTTTGACAACAG
64 TTGAAACAACAA
79334031 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
79334096 GAAACATACGAA
66 GAAACA-AC-AA
* * * * *
79334108 AAATTGACAATACTTCAACGTGTCCCGAGGCTCAACTCACCTCACCTCTCGCAATACGAGTTGAT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTC-A---A-CTCACCTCTCGCAATATGAGTTGA-
*
79334173 TTTTTTG--ACAACAG
60 TTTTTTGAAACAACAA
*
79334187 AAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
79334252 GAAACATACGAA
66 GAAACA-AC-AA
* * *
79334264 AAATTGACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGA-ATTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
79334328 GAAA
66 GAAA
79334332 TAAAACATCA
Statistics
Matches: 265, Mismatches: 24, Indels: 25
0.84 0.08 0.08
Matches are distributed among these distances:
73 7 0.03
74 23 0.09
75 47 0.18
76 12 0.05
77 109 0.41
78 2 0.01
79 29 0.11
80 2 0.01
81 4 0.02
82 23 0.09
83 7 0.03
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (75 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAACAACAA
Found at i:79334344 original size:156 final size:151
Alignment explanation
Indices: 79333954--79334314 Score: 587
Period size: 156 Copynumber: 2.3 Consensus size: 151
79333944 TGAAAAATGG
* * *
79333954 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGACAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TTT
*
79334019 TTTTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
63 TTTTGACAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATG
79334084 AGTTGATTTTTTGAAACATACGAA
128 AGTTGATTTTTTGAAACATACGAA
* * *
79334108 AAATTGACAATACTTCAACGTGTCCCGAGGCTCAACTCACCTCACCTCTCGCAATACGAGTTGAT
1 AAATTGACAATACCTCAGCGTGTCCTGAGGCTC-A---A-CTCACCTCTCGCAATACGAGTTGAT
79334173 TTTTTTGACAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATA
61 TTTTTTGACAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATA
79334238 TGAGTTGATTTTTTGAAACATACGAA
126 TGAGTTGATTTTTTGAAACATACGAA
79334264 AAATTGACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTGACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
79334315 TGAATTGAAT
Statistics
Matches: 192, Mismatches: 10, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
151 16 0.08
152 10 0.05
153 1 0.01
154 19 0.10
155 1 0.01
156 122 0.64
157 23 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (151 bp):
AAATTGACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTT
TGACAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAACATACGAA
Found at i:79346755 original size:11 final size:11
Alignment explanation
Indices: 79346724--79346772 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
79346714 TAATGGCATT
79346724 TAAATATATATA
1 TAAA-ATATATA
79346736 TACATAATATATA
1 TA-A-AATATATA
*
79346749 TAAAATACATA
1 TAAAATATATA
*
79346760 TAATATATATA
1 TAAAATATATA
79346771 TA
1 TA
79346773 CGTATTAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
11 18 0.56
12 3 0.09
13 10 0.31
14 1 0.03
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (11 bp):
TAAAATATATA
Found at i:79347431 original size:11 final size:11
Alignment explanation
Indices: 79347400--79347439 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
79347390 TTTTTTTAAA
79347400 TATT-TATTTT
1 TATTATATTTT
79347410 GTATATATATTTT
1 -TAT-TATATTTT
79347423 TATTATATTTT
1 TATTATATTTT
79347434 TATTAT
1 TATTAT
79347440 GATGTATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 17 0.63
12 4 0.15
13 6 0.22
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (11 bp):
TATTATATTTT
Found at i:79347856 original size:26 final size:26
Alignment explanation
Indices: 79347827--79347877 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
79347817 GGATTCTTGG
79347827 TTTTTTTGGGGGGGGTTAGGTTTTTC
1 TTTTTTTGGGGGGGGTTAGGTTTTTC
79347853 TTTTTTTGGGGGGGGTTAGGTTTTT
1 TTTTTTTGGGGGGGGTTAGGTTTTT
79347878 GGGGGGGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.04, C:0.02, G:0.39, T:0.55
Consensus pattern (26 bp):
TTTTTTTGGGGGGGGTTAGGTTTTTC
Found at i:79354277 original size:6 final size:6
Alignment explanation
Indices: 79354266--79354296 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
79354256 CTTGATGGGT
79354266 TTGGAG TTGGAG TTGGAG TTGGAG TTGGAG T
1 TTGGAG TTGGAG TTGGAG TTGGAG TTGGAG T
79354297 AGTATGATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.35
Consensus pattern (6 bp):
TTGGAG
Found at i:79354826 original size:6 final size:6
Alignment explanation
Indices: 79354815--79354847 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
79354805 CAAAGCTTTT
79354815 ACTCAC ACTCAC ACTCAC ACTCAC ACTCAC ACT
1 ACTCAC ACTCAC ACTCAC ACTCAC ACTCAC ACT
79354848 TGTTTAAGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.33, C:0.48, G:0.00, T:0.18
Consensus pattern (6 bp):
ACTCAC
Found at i:79356996 original size:22 final size:22
Alignment explanation
Indices: 79356966--79357054 Score: 70
Period size: 23 Copynumber: 3.7 Consensus size: 22
79356956 GTTACCTACC
*
79356966 ATCAAATCTCTAAGAATATAAT
1 ATCATATCTCTAAGAATATAAT
*
79356988 ATCATATCTTCTAAGATTCCATATCAT
1 ATCATATC-TCTAAGA----ATATAAT
* *
79357015 ATCTAAGATCTCTAAGATTATAAT
1 ATC--ATATCTCTAAGAATATAAT
79357039 ATCATATCCTCTAAGA
1 ATCATAT-CTCTAAGA
79357055 TTAGTTACCA
Statistics
Matches: 53, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
22 10 0.19
23 15 0.28
24 8 0.15
27 9 0.17
28 7 0.13
29 4 0.08
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (22 bp):
ATCATATCTCTAAGAATATAAT
Found at i:79357067 original size:51 final size:51
Alignment explanation
Indices: 79356971--79357067 Score: 140
Period size: 51 Copynumber: 1.9 Consensus size: 51
79356961 CTACCATCAA
* * *
79356971 ATCTCTAAGAATATAATATCATATCTTCTAAGATTCCATATCATATCTAAG
1 ATCTCTAAGAATATAATATCATATCCTCTAAGATTACATACCATATCTAAG
* **
79357022 ATCTCTAAGATTATAATATCATATCCTCTAAGATTAGTTACCATAT
1 ATCTCTAAGAATATAATATCATATCCTCTAAGATTACATACCATAT
79357068 TTTGCCTAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.38
Consensus pattern (51 bp):
ATCTCTAAGAATATAATATCATATCCTCTAAGATTACATACCATATCTAAG
Found at i:79360058 original size:51 final size:51
Alignment explanation
Indices: 79359942--79360078 Score: 166
Period size: 51 Copynumber: 2.7 Consensus size: 51
79359932 CTACCATCAA
* *
79359942 ATCTCTAAGAATATAATATCATATCTTCTAAGATTCCATATCTTAGATAAG
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATTCCATATCATAGATAAG
* * ** * * * **
79359993 ATATGTAATCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATTCCATATCATAGATAAG
*
79360044 ATCTCTAAGATTATAATATCATATCCTCTAAGATT
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATT
79360079 AGTTACCATA
Statistics
Matches: 67, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.39
Consensus pattern (51 bp):
ATCTCTAAGATTATAATATCATATCTTCTAAGATTCCATATCATAGATAAG
Found at i:79360391 original size:28 final size:29
Alignment explanation
Indices: 79360360--79360452 Score: 75
Period size: 28 Copynumber: 3.2 Consensus size: 29
79360350 TTATAGCCTA
79360360 ATTTTTAGTTTCTTTATAAATTATATA-T
1 ATTTTTAGTTTCTTTATAAATTATATATT
* * * *
79360388 ATTTAAATAATTTTCACTTAT-ATTTATA-ATT
1 ATTT---TTAGTTTC-TTTATAAATTATATATT
* *
79360419 TTTTTTAGTTTCTTAATAAATTATATATT
1 ATTTTTAGTTTCTTTATAAATTATATATT
79360448 ATTTT
1 ATTTT
79360453 GGTCAAAAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 13
0.66 0.15 0.18
Matches are distributed among these distances:
27 3 0.06
28 16 0.34
29 7 0.15
30 1 0.02
31 16 0.34
32 4 0.09
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (29 bp):
ATTTTTAGTTTCTTTATAAATTATATATT
Found at i:79360402 original size:63 final size:60
Alignment explanation
Indices: 79360326--79360451 Score: 146
Period size: 59 Copynumber: 2.0 Consensus size: 60
79360316 TATTGATGTT
* * * *
79360326 TTTAAGTATTTTTCACATATATAGTTATAGCCTAATTTTTAGTTTCTTTATAAATTATATA-TA
1 TTTAAATAATTTTCAC-T-TATAGTTATA--ATAATTTTTAGTTTCTTAATAAATTATATATTA
* **
79360389 TTTAAATAATTTTCACTTATATTTATAATTTTTTTTAGTTTCTTAATAAATTATATATTA
1 TTTAAATAATTTTCACTTATAGTTATAATAATTTTTAGTTTCTTAATAAATTATATATTA
79360449 TTT
1 TTT
79360452 TGGTCAAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
59 26 0.47
60 5 0.09
61 9 0.16
62 1 0.02
63 14 0.25
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (60 bp):
TTTAAATAATTTTCACTTATAGTTATAATAATTTTTAGTTTCTTAATAAATTATATATTA
Found at i:79371862 original size:11 final size:11
Alignment explanation
Indices: 79371818--79371843 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
79371808 AAGAATATAC
79371818 AAAAAAAGTTA
1 AAAAAAAGTTA
79371829 AAAAAAAGTTA
1 AAAAAAAGTTA
79371840 AAAA
1 AAAA
79371844 TTTTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (11 bp):
AAAAAAAGTTA
Found at i:79372951 original size:26 final size:26
Alignment explanation
Indices: 79372921--79372974 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
79372911 ACTTTTTAAG
* *
79372921 TAATTAATAC-AAATTATTTGTAAAAT
1 TAATT-ATACAAAAATATTTCTAAAAT
79372947 TAATTATACATAAAATATTTCTAAAAT
1 TAATTATACA-AAAATATTTCTAAAAT
79372974 T
1 T
79372975 TAAATAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 4 0.17
26 5 0.21
27 15 0.62
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.43
Consensus pattern (26 bp):
TAATTATACAAAAATATTTCTAAAAT
Found at i:79379480 original size:46 final size:47
Alignment explanation
Indices: 79379415--79379734 Score: 321
Period size: 46 Copynumber: 6.7 Consensus size: 47
79379405 TTATCTTTGA
* * * * *
79379415 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
79379461 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
* **
79379507 CACGCTT-CCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCCCGT
1 CATG-TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
**
79379553 CATGTTGCCATGGTATCTTTCAACCATGGTCAACCATGGTCTTATTCA-TTTCCCGT
1 CATGTTGCCATGGTATC--T------T--TCAACCATGGTCTTATTCATTTTCATGT
* * *
79379609 CATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
* ** *
79379655 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
* *
79379701 CAGGTTGCCATGTTATCTTTCAACCATGGTCTTA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
79379735 CACATTTCAT
Statistics
Matches: 241, Mismatches: 20, Indels: 26
0.84 0.07 0.09
Matches are distributed among these distances:
45 6 0.02
46 186 0.77
47 2 0.01
48 1 0.00
54 2 0.01
56 44 0.18
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
Found at i:79379566 original size:30 final size:30
Alignment explanation
Indices: 79379530--79379622 Score: 83
Period size: 30 Copynumber: 3.2 Consensus size: 30
79379520 TATCTTTCAA
79379530 CCATGGTCTTATTCATTTCCCGTCATGTTG
1 CCATGGTCTTATTCATTTCCCGTCATGTTG
* **
79379560 CCATGG---TA-TC-TTTCAAC--CATGGTCAA
1 CCATGGTCTTATTCATTTC-CCGTCAT-GT-TG
79379586 CCATGGTCTTATTCATTTCCCGTCATGTTG
1 CCATGGTCTTATTCATTTCCCGTCATGTTG
79379616 CCATGGT
1 CCATGGT
79379623 ATCTCTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 20
0.64 0.08 0.27
Matches are distributed among these distances:
24 3 0.06
25 6 0.13
26 9 0.19
27 2 0.04
29 2 0.04
30 16 0.34
31 6 0.13
32 3 0.06
ACGTcount: A:0.17, C:0.27, G:0.17, T:0.39
Consensus pattern (30 bp):
CCATGGTCTTATTCATTTCCCGTCATGTTG
Found at i:79379592 original size:56 final size:56
Alignment explanation
Indices: 79379526--79379639 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
79379516 ATGGTATCTT
*
79379526 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGG
1 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGG
79379582 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGG
1 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGG
79379638 TC
1 TC
79379640 CTATTCATTT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.37
Consensus pattern (56 bp):
TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGG
Found at i:79379662 original size:102 final size:102
Alignment explanation
Indices: 79379480--79379685 Score: 315
Period size: 102 Copynumber: 2.0 Consensus size: 102
79379470 ATGGTATCTT
* * *
79379480 TCAACCATGGTCTTATTCATTTCATGTCACGCTTCCATGGTATCTTTCAACCATGGTCTTATTCA
1 TCAACCATGGTCTTATTCATTTCACGTCACGCTTCCATGGTATCTCTCAACCATGGTCCTATTCA
* * *
79379545 TTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGG
66 TTTCACATCAGGTTGCCATGGTATCTTTCAACCATGG
* *
79379582 TCAACCATGGTCTTATTCATTTCCCGTCATG-TTGCCATGGTATCTCTCAACCATGGTCCTATTC
1 TCAACCATGGTCTTATTCATTTCACGTCACGCTT-CCATGGTATCTCTCAACCATGGTCCTATTC
*
79379646 ATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGG
65 ATTTCACATCAGGTTGCCATGGTATCTTTCAACCATGG
79379684 TC
1 TC
79379686 TTACACATTT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
101 2 0.02
102 92 0.98
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (102 bp):
TCAACCATGGTCTTATTCATTTCACGTCACGCTTCCATGGTATCTCTCAACCATGGTCCTATTCA
TTTCACATCAGGTTGCCATGGTATCTTTCAACCATGG
Found at i:79379708 original size:148 final size:148
Alignment explanation
Indices: 79379434--79379731 Score: 445
Period size: 148 Copynumber: 2.0 Consensus size: 148
79379424 ATAGTGTCTT
* * * * *
79379434 TCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
1 TCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
* ** * * *
79379499 TTTCATGTCACGCTTCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCAT
66 TTTCATATCACGCTTCCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAGGTTGCCAT
79379564 GGTATCTTTCAACCATGG
131 GGTATCTTTCAACCATGG
*
79379582 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
1 TCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
* *
79379647 TTTCATATCA-GGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCA
66 TTTCATATCACGCTT-CCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAGGTTGCCA
*
79379711 TGTTATCTTTCAACCATGG
130 TGGTATCTTTCAACCATGG
79379730 TC
1 TC
79379732 TTACACATTT
Statistics
Matches: 134, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
147 3 0.02
148 131 0.98
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.40
Consensus pattern (148 bp):
TCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
TTTCATATCACGCTTCCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAGGTTGCCAT
GGTATCTTTCAACCATGG
Found at i:79383290 original size:3 final size:3
Alignment explanation
Indices: 79383273--79383326 Score: 74
Period size: 3 Copynumber: 18.0 Consensus size: 3
79383263 ACTGATAATT
* *
79383273 AAG AAA AAG -AG AAG AAG AAG AAG AAG AAG AAG AAG AAG AATG ACG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA-G AAG
79383318 AAG AAG AAG
1 AAG AAG AAG
79383327 GACGAAGGGT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
2 2 0.04
3 41 0.91
4 2 0.04
ACGTcount: A:0.65, C:0.02, G:0.31, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:79384559 original size:14 final size:15
Alignment explanation
Indices: 79384535--79384566 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
79384525 AAATATTTTA
79384535 TTTTTATTTTTATTT
1 TTTTTATTTTTATTT
79384550 TTTTTA-TTTTATTT
1 TTTTTATTTTTATTT
79384564 TTT
1 TTT
79384567 AAAAAAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTATTTTTATTT
Found at i:79399989 original size:37 final size:37
Alignment explanation
Indices: 79399939--79400017 Score: 140
Period size: 37 Copynumber: 2.1 Consensus size: 37
79399929 CACTCCAGAT
*
79399939 ATGTCGTACTTGAGCTGTAACATAGTTGATTGTCAAC
1 ATGTCGTACTTGAGCTGTAACAGAGTTGATTGTCAAC
*
79399976 ATGTCGTGCTTGAGCTGTAACAGAGTTGATTGTCAAC
1 ATGTCGTACTTGAGCTGTAACAGAGTTGATTGTCAAC
79400013 ATGTC
1 ATGTC
79400018 ATAATGTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.34
Consensus pattern (37 bp):
ATGTCGTACTTGAGCTGTAACAGAGTTGATTGTCAAC
Found at i:79403426 original size:18 final size:19
Alignment explanation
Indices: 79403399--79403441 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
79403389 TTGAATTGAT
**
79403399 AAAATATTAATTATATA-A
1 AAAATATTAAAAATATATA
*
79403417 AAAATTTTAAAAATATATA
1 AAAATATTAAAAATATATA
79403436 AAAATA
1 AAAATA
79403442 ACTTTAATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAATATTAAAAATATATA
Found at i:79404878 original size:23 final size:23
Alignment explanation
Indices: 79404833--79404890 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 23
79404823 TATGGTTTAA
*
79404833 TTATTATATATTTTTATTGTTATT
1 TTATTA-ATTTTTTTATTGTTATT
*
79404857 TTATTAAGTTTTTTTGTT-TTATT
1 TTATTAA-TTTTTTTATTGTTATT
*
79404880 TTTTTAATTTT
1 TTATTAATTTT
79404891 AAAAAATGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 4 0.13
23 12 0.40
24 14 0.47
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (23 bp):
TTATTAATTTTTTTATTGTTATT
Found at i:79406350 original size:46 final size:46
Alignment explanation
Indices: 79406283--79406460 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
79406273 TGTAACCCAC
* * *
79406283 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGATCGCAT
* * * * *
79406329 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATG-ATCGCAT
* * * * *
79406375 ACATTTCA-CGAACTCGGACTCAACTCAAAGAGTTCGGACGATCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGATCGCAT
* * *
79406422 CCATAAGTGAACTTGGACTCAACTCAATGAGCTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATG
79406461 CCTAGTTACA
Statistics
Matches: 105, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
45 2 0.02
46 67 0.64
47 34 0.32
48 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGATCGCAT
Found at i:79406399 original size:93 final size:93
Alignment explanation
Indices: 79406292--79406505 Score: 338
Period size: 93 Copynumber: 2.3 Consensus size: 93
79406282 CCCATAAGCA
* ** *
79406292 AACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAAC
* *
79406357 GAGTTCGGATGCCTAGTTACATTTCACG
66 GAGCTCGGATGCCTAGTTACATCTCACG
* * *
79406385 AACTCGGACTCAACTCAAAGAGTTCGGACGATCGCATCCATAAGTGAACTTGGACTCAACTCAAT
1 AACTCGGACTCAACTCAACGAGTTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAAC
79406450 GAGCTCGGATGCCTAGTTACATCTCACG
66 GAGCTCGGATGCCTAGTTACATCTCACG
*
79406478 AACTCAGACTCAACTCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGTTCGGA
79406506 TGCTCAAAAA
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 110 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACG
Found at i:79406408 original size:47 final size:46
Alignment explanation
Indices: 79406337--79406508 Score: 186
Period size: 47 Copynumber: 3.7 Consensus size: 46
79406327 ATCCATAAGT
79406337 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACA-TTCAC
* * * * * * * *
79406384 GAACTCGGACTCAACTCAAAGAGTTCGGACG-ATCGCATCCA-TAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATTCA-C
* * *
79406430 GAACTTGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-TCAC
*
79406477 GAACTCAGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
79406509 TCAAAAATCC
Statistics
Matches: 98, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 32 0.33
47 62 0.63
48 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTCAC
Found at i:79413619 original size:59 final size:59
Alignment explanation
Indices: 79413556--79413668 Score: 226
Period size: 59 Copynumber: 1.9 Consensus size: 59
79413546 GGGAGATAAG
79413556 TGGCCGGCACCACATTATAATATTTAAAAAATAGTTATTTTTGGGTGTTGGCACACTGA
1 TGGCCGGCACCACATTATAATATTTAAAAAATAGTTATTTTTGGGTGTTGGCACACTGA
79413615 TGGCCGGCACCACATTATAATATTTAAAAAATAGTTATTTTTGGGTGTTGGCAC
1 TGGCCGGCACCACATTATAATATTTAAAAAATAGTTATTTTTGGGTGTTGGCAC
79413669 CAACTTTATC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (59 bp):
TGGCCGGCACCACATTATAATATTTAAAAAATAGTTATTTTTGGGTGTTGGCACACTGA
Found at i:79415730 original size:131 final size:131
Alignment explanation
Indices: 79415433--79415820 Score: 426
Period size: 131 Copynumber: 3.0 Consensus size: 131
79415423 CTTTATTTAA
* * *
79415433 CATGAACAATTTTATTTGAGTTAGCTGATTTAAGATCGCAACTCCAAAAAACTTGCTAATTTAAG
1 CATGAACAATTTTATTTGAGTTAGCTGATTTAATATCACAACTCCAAAAAACTTACTAATTTAAG
* *
79415498 ATCACAATTGATATTATTAAGGTTCACTGATTTAAGATCGCAATCTAAGTTCATTCGATTTTAGA
66 ATCACAACTGATATTATTAAGGTTCACTGATTTAAGATCGCAACCTAAGTTCATTCGATTTTAGA
79415563 T
131 T
* * * ** *
79415564 CATGAACAATTCTATTTGAGTTAGCTAATTCAATATCACAACTCTGAACAA-TTCACTAATTTAA
1 CATGAACAATTTTATTTGAGTTAGCTGATTTAATATCACAACTCCAAAAAACTT-ACTAATTTAA
* **
79415628 GATCGCAACTGATATTATTAAGGTTTGCTGATTTCAA-ATCGCAACCTAAGTTCATTCGATTTTA
65 GATCACAACTGATATTATTAAGGTTCACTGATTT-AAGATCGCAACCTAAGTTCATTCGATTTTA
79415692 GAT
129 GAT
* ** *** * * * *
79415695 CATGAACAATTTTATTTGAATTTTCTGATTTAATATTGTAACTCCAAACAGC-TAGTTGATTTAA
1 CATGAACAATTTTATTTGAGTTAGCTGATTTAATATCACAACTCCAAAAAACTTA-CTAATTTAA
* * * ** *
79415759 GATCACAGCTAATATTGTTAAAATT-AGATGATTTAAGATCGCAACCTATA-TTCATTCGATTT
65 GATCACAACTGATATTATTAAGGTTCA-CTGATTTAAGATCGCAACCTA-AGTTCATTCGATTT
79415821 ATCGGAGTTA
Statistics
Matches: 214, Mismatches: 36, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
130 5 0.02
131 206 0.96
132 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (131 bp):
CATGAACAATTTTATTTGAGTTAGCTGATTTAATATCACAACTCCAAAAAACTTACTAATTTAAG
ATCACAACTGATATTATTAAGGTTCACTGATTTAAGATCGCAACCTAAGTTCATTCGATTTTAGA
T
Found at i:79421748 original size:63 final size:63
Alignment explanation
Indices: 79421630--79421774 Score: 157
Period size: 63 Copynumber: 2.3 Consensus size: 63
79421620 ATGTGAGTTA
* * * * * ** *
79421630 GATTAATTATATAAGTAATTTAAAGTCTTCTTAAATTGTGTTTTTATAATTAAATAAGATTTT
1 GATTAATTAAATAATTAATCTAAAGTCTTCTTAAATTGAGTTTCTATAACCAAATAAAATTTT
* *
79421693 GATTAATTAAATAATTAATCTAAAGTGTTCTTAAATTGAGTTTCTACT-GCCAAATAAAATTTT
1 GATTAATTAAATAATTAATCTAAAGTCTTCTTAAATTGAGTTTCTA-TAACCAAATAAAATTTT
* * *
79421756 GTTTAGTTAGATAATTAAT
1 GATTAATTAAATAATTAAT
79421775 AGAACTTTCT
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
63 67 0.99
64 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.46
Consensus pattern (63 bp):
GATTAATTAAATAATTAATCTAAAGTCTTCTTAAATTGAGTTTCTATAACCAAATAAAATTTT
Found at i:79423590 original size:19 final size:19
Alignment explanation
Indices: 79423566--79423602 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
79423556 TCAATCTATT
79423566 TATCTAATTTTATTATTTC
1 TATCTAATTTTATTATTTC
* *
79423585 TATCTATTTTTTTTATTT
1 TATCTAATTTTATTATTT
79423603 TATTTCACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.70
Consensus pattern (19 bp):
TATCTAATTTTATTATTTC
Found at i:79425290 original size:86 final size:86
Alignment explanation
Indices: 79425145--79425316 Score: 317
Period size: 86 Copynumber: 2.0 Consensus size: 86
79425135 AATGTGATTT
* *
79425145 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTTATACCAATATAAAATTTTAACACGAAT
1 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACAAATATAAAATTTTAACACGAAT
*
79425210 ATTTTATGGCATAATTAATAA
66 ATTTAATGGCATAATTAATAA
79425231 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACAAATATAAAATTTTAACACGAAT
1 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACAAATATAAAATTTTAACACGAAT
79425296 ATTTAATGGCATAATTAATAA
66 ATTTAATGGCATAATTAATAA
79425317 ATAAATTTTA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (86 bp):
TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACAAATATAAAATTTTAACACGAAT
ATTTAATGGCATAATTAATAA
Found at i:79428519 original size:23 final size:25
Alignment explanation
Indices: 79428474--79428520 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
79428464 AATAAATATA
*
79428474 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
79428499 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
79428521 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:79433298 original size:40 final size:40
Alignment explanation
Indices: 79433254--79433330 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
79433244 TTATTTTGTG
* * *
79433254 ATAGTTAAATTGCTATCTTTCTTACGAATGATCAAATGTT
1 ATAGTTAAATTGCCATATTTCTTACGAATAATCAAATGTT
*
79433294 ATAGTTAATTTGCCATATTTCTTACGAATAATCAAAT
1 ATAGTTAAATTGCCATATTTCTTACGAATAATCAAAT
79433331 ATTTCATAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (40 bp):
ATAGTTAAATTGCCATATTTCTTACGAATAATCAAATGTT
Found at i:79433627 original size:29 final size:29
Alignment explanation
Indices: 79433547--79433629 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
79433537 GAAGAGGTGG
* *
79433547 AGAACTTGTTCATTGAGAGTTTATGATGA
1 AGAACTTGTTCGTTGAGAGTTTGTGATGA
79433576 AGAACTTGTTCGTTGAGAGTTTGTGATGA
1 AGAACTTGTTCGTTGAGAGTTTGTGATGA
*
79433605 AGAACTTGTTCGTTGAGAATTTGTG
1 AGAACTTGTTCGTTGAGAGTTTGTG
79433630 TCAAGGTGGG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.27, C:0.07, G:0.28, T:0.39
Consensus pattern (29 bp):
AGAACTTGTTCGTTGAGAGTTTGTGATGA
Found at i:79435612 original size:29 final size:29
Alignment explanation
Indices: 79435577--79435648 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
79435567 GTTGTGAGAT
* *
79435577 TGGCACTAAGTGTGCGGGTTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAGTTT-AAAGTACA
79435606 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTTAAAGTACA
79435635 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
79435649 TGTGGTTGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:79445702 original size:30 final size:31
Alignment explanation
Indices: 79445662--79445722 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
79445652 CTAAAAGGTA
** *
79445662 GAGATGTCTATGGAGGAAACAGTACTCATCT
1 GAGATGTCTATAAAGGAAACAATACTCATCT
*
79445693 GAGAT-TCTATAAAGGAAATAATACTCATCT
1 GAGATGTCTATAAAGGAAACAATACTCATCT
79445723 TACCACATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.28
Consensus pattern (31 bp):
GAGATGTCTATAAAGGAAACAATACTCATCT
Found at i:79448766 original size:53 final size:53
Alignment explanation
Indices: 79448704--79448811 Score: 216
Period size: 53 Copynumber: 2.0 Consensus size: 53
79448694 AGGTTTGGTC
79448704 ATATATGTGTGTCTTAAATGTATGCTCTGGGTATGCTCCGTTAAGAGTAAACT
1 ATATATGTGTGTCTTAAATGTATGCTCTGGGTATGCTCCGTTAAGAGTAAACT
79448757 ATATATGTGTGTCTTAAATGTATGCTCTGGGTATGCTCCGTTAAGAGTAAACT
1 ATATATGTGTGTCTTAAATGTATGCTCTGGGTATGCTCCGTTAAGAGTAAACT
79448810 AT
1 AT
79448812 GGAGTTAAAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (53 bp):
ATATATGTGTGTCTTAAATGTATGCTCTGGGTATGCTCCGTTAAGAGTAAACT
Found at i:79453854 original size:16 final size:16
Alignment explanation
Indices: 79453835--79453865 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79453825 CTTCTTCACT
79453835 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
79453851 TACTTACTTACTTAA
1 TACTCACTTACTTAA
79453866 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:79453871 original size:20 final size:20
Alignment explanation
Indices: 79453832--79453871 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
79453822 AAACTTCTTC
* *
79453832 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
79453852 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
79453872 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:79453982 original size:23 final size:24
Alignment explanation
Indices: 79453944--79453988 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
79453934 TTTGCTCTTC
*
79453944 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
79453968 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
79453989 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:79454247 original size:55 final size:53
Alignment explanation
Indices: 79454057--79454311 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
79454047 ACACGGGTAC
* * * * *
79454057 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * *
79454106 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
79454159 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATGGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* ***
79454214 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * * *
79454267 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
79454312 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 48 0.28
54 10 0.06
55 71 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:79454248 original size:108 final size:110
Alignment explanation
Indices: 79454104--79454304 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
79454094 ATCCTTTTGA
* *
79454104 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
79454167 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATGGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATGGT
* * * *
79454212 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
79454277 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
79454305 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.58
109 7 0.08
110 27 0.33
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATGGT
Found at i:79469856 original size:56 final size:54
Alignment explanation
Indices: 79469723--79469873 Score: 189
Period size: 53 Copynumber: 2.8 Consensus size: 54
79469713 AACATAGCAC
* * *
79469723 GCCTCTCAACAGGGCTACATAAGCTCCCGGACCTAGCATGCATCACATAACCACA
1 GCCTCTCAAC-GGGCTACATAAGCTCCCGGACCTAGCATGTACCACATAACAACA
* *
79469778 -CCTCTCATA-GGGCTACATAAGCTCCCGGACCTAGCGTGTACCACATAATAACA
1 GCCTCTCA-ACGGGCTACATAAGCTCCCGGACCTAGCATGTACCACATAACAACA
* *
79469831 TGCCTCTCAACGGGGCTACACAAGCTCCCGAACCTAGCATGTA
1 -GCCTCTCAAC-GGGCTACATAAGCTCCCGGACCTAGCATGTA
79469874 TCATGTCATC
Statistics
Matches: 83, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
53 39 0.47
54 8 0.10
55 8 0.10
56 28 0.34
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (54 bp):
GCCTCTCAACGGGCTACATAAGCTCCCGGACCTAGCATGTACCACATAACAACA
Found at i:79476990 original size:54 final size:56
Alignment explanation
Indices: 79476917--79477069 Score: 175
Period size: 54 Copynumber: 2.8 Consensus size: 56
79476907 CACAACATAG
* * *
79476917 CACGCCTTTCAACGGGGCTACACAAGCTCCTGGACCTAGCATGCATCACAT-A-AC
1 CACGCCTCTCAACGGGGCTACACAAGCTCCTGGACCTAGCATGCACCACATAATAA
** * * * * *
79476971 CACGCCTCTCAACAAGGCTACATAAGGTCCTAGACCTAGCGTGTACCACATAATAA
1 CACGCCTCTCAACGGGGCTACACAAGCTCCTGGACCTAGCATGCACCACATAATAA
* * *
79477027 CATGCCTCTCAACGGGGCTACACAAGCTCCCGAACCTAGCATG
1 CACGCCTCTCAACGGGGCTACACAAGCTCCTGGACCTAGCATG
79477070 TTTCATGTCA
Statistics
Matches: 78, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
54 42 0.54
55 1 0.01
56 35 0.45
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.18
Consensus pattern (56 bp):
CACGCCTCTCAACGGGGCTACACAAGCTCCTGGACCTAGCATGCACCACATAATAA
Found at i:79480999 original size:39 final size:40
Alignment explanation
Indices: 79480956--79481039 Score: 125
Period size: 42 Copynumber: 2.1 Consensus size: 40
79480946 TCTTAGATCC
* *
79480956 GCCACCAC-TTTACGGCTAAGGGCATCAGCTACTACGTTA
1 GCCACCACTTTTACGGCTAAGGGCATCAGCTACCACATTA
79480995 GCCACCACTTTTTTACGGCTAAGGGCATCAGCTACCACATTA
1 GCCACCAC--TTTTACGGCTAAGGGCATCAGCTACCACATTA
79481037 GCC
1 GCC
79481040 TTACCTGGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
39 8 0.20
42 32 0.80
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (40 bp):
GCCACCACTTTTACGGCTAAGGGCATCAGCTACCACATTA
Done.