Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 241 of 343
Found at i:79483174 original size:15 final size:15
Alignment explanation
Indices: 79483154--79483183 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
79483144 CATTTTATTT
79483154 ATATTAGGATAATTA
1 ATATTAGGATAATTA
79483169 ATATTAGGATAATTA
1 ATATTAGGATAATTA
79483184 TTAGGATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (15 bp):
ATATTAGGATAATTA
Found at i:79483230 original size:10 final size:10
Alignment explanation
Indices: 79483215--79483240 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
79483205 GATTTTATTC
79483215 TAATTATCTT
1 TAATTATCTT
79483225 TAATTATCTT
1 TAATTATCTT
79483235 TAATTA
1 TAATTA
79483241 AATGTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (10 bp):
TAATTATCTT
Found at i:79487405 original size:21 final size:21
Alignment explanation
Indices: 79487379--79487421 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
79487369 ACAACATGAG
79487379 ATTGTGTACGTCCATATGGCT
1 ATTGTGTACGTCCATATGGCT
*
79487400 ATTGTGTACGTTCATATGGCT
1 ATTGTGTACGTCCATATGGCT
79487421 A
1 A
79487422 AGACCCATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.40
Consensus pattern (21 bp):
ATTGTGTACGTCCATATGGCT
Found at i:79492196 original size:46 final size:44
Alignment explanation
Indices: 79492084--79492254 Score: 148
Period size: 46 Copynumber: 3.7 Consensus size: 44
79492074 GTATATCTAT
*
79492084 GCTGATACCATGTCCCAGACATGATCTTAGACTGGCACATCTCATA
1 GCTGATA-CATGTCCCAGACATG-TCTTACACTGGCACATCTCATA
* * * *
79492130 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACTTCTCGA-G
1 GCTGATACATGTCCCAGACATGTCTTACACTGGC--ACATCTC-ATA
* * *
79492176 GCTGATACATGTCCAAGACATGTCTTACACTAGCGCTCGTCTCA-A
1 GCTGATACATGTCCCAGACATGTCTTACACT-G-GCACATCTCATA
* *
79492221 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
1 -GCTGAT-ACATGTCCCAGACAT-GTCTTACACT
79492255 AACTCTCATA
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
44 11 0.11
45 16 0.16
46 49 0.48
47 15 0.15
48 12 0.12
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (44 bp):
GCTGATACATGTCCCAGACATGTCTTACACTGGCACATCTCATA
Found at i:79492457 original size:47 final size:47
Alignment explanation
Indices: 79492403--79492497 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
79492393 GTTATCTCAT
79492403 TTCCACAATCAAGTAATTCATGCTACGCTAATTTCAATACAATTCAA
1 TTCCACAATCAAGTAATTCATGCTACGCTAATTTCAATACAATTCAA
79492450 TTCCACAATCAAGTAATTCATGCTACGCTAATTTCAATACAATTCAA
1 TTCCACAATCAAGTAATTCATGCTACGCTAATTTCAATACAATTCAA
79492497 T
1 T
79492498 CACATACATT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.33
Consensus pattern (47 bp):
TTCCACAATCAAGTAATTCATGCTACGCTAATTTCAATACAATTCAA
Found at i:79505012 original size:12 final size:12
Alignment explanation
Indices: 79504995--79505032 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
79504985 AAATGTTTTG
79504995 AAAATTATAGAA
1 AAAATTATAGAA
79505007 AAAATTATTA-AA
1 AAAATTA-TAGAA
*
79505019 AAAAGTATAGAA
1 AAAATTATAGAA
79505031 AA
1 AA
79505033 GTTTTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
11 2 0.09
12 19 0.83
13 2 0.09
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (12 bp):
AAAATTATAGAA
Found at i:79505467 original size:17 final size:19
Alignment explanation
Indices: 79505434--79505468 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
79505424 ATTATTTGGA
79505434 TATTGTATAACTTTTGTTT
1 TATTGTATAACTTTTGTTT
79505453 TATTGT-TAA-TTTTGTT
1 TATTGTATAACTTTTGTT
79505469 ACTATTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.20, C:0.03, G:0.11, T:0.66
Consensus pattern (19 bp):
TATTGTATAACTTTTGTTT
Found at i:79505633 original size:13 final size:13
Alignment explanation
Indices: 79505609--79505645 Score: 53
Period size: 11 Copynumber: 3.1 Consensus size: 13
79505599 TTATATTTTT
79505609 TAAAAAATT-ATA
1 TAAAAAATTAATA
79505621 T-AAAAA-TAATA
1 TAAAAAATTAATA
79505632 TAAAAAATTAATA
1 TAAAAAATTAATA
79505645 T
1 T
79505646 GGGCGAGCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.05
11 9 0.41
12 6 0.27
13 6 0.27
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAAAAATTAATA
Found at i:79508547 original size:5 final size:5
Alignment explanation
Indices: 79508537--79508562 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
79508527 TCAAAATAAC
79508537 ATATA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA A
79508563 AAGAAATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:79508596 original size:22 final size:24
Alignment explanation
Indices: 79508551--79508623 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
79508541 AATATAATAT
79508551 AATATA-ATATAAAAGAAATAT-A
1 AATATAGATATAAAAGAAATATAA
*
79508573 AATA-AGATATAAAA-AATATTTAA
1 AATATAGATATAAAAGAA-ATATAA
* *
79508596 AATATAGATA-AATAATATATATAA
1 AATATAGATATAA-AAGAAATATAA
79508620 AATA
1 AATA
79508624 AAAAATTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
21 3 0.07
22 15 0.36
23 7 0.17
24 16 0.38
25 1 0.02
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (24 bp):
AATATAGATATAAAAGAAATATAA
Found at i:79508607 original size:11 final size:10
Alignment explanation
Indices: 79508531--79508623 Score: 64
Period size: 10 Copynumber: 8.9 Consensus size: 10
79508521 ATAGAATCAA
*
79508531 AATAACATAT
1 AATAAAATAT
*
79508541 AATATAATAT
1 AATAAAATAT
*
79508551 AATATAATAT
1 AATAAAATAT
*
79508561 AAAAGAAATAT
1 AATA-AAATAT
*
79508572 AAATAAGATAT
1 -AATAAAATAT
79508583 AA-AAAATAT
1 AATAAAATAT
*
79508592 -TTAAAATAT
1 AATAAAATAT
79508601 AGATAAATAATAT
1 A-AT-AA-AATAT
79508614 ATATAAAATA
1 A-ATAAAATA
79508624 AAAAATTTTA
Statistics
Matches: 66, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
9 13 0.20
10 23 0.35
11 15 0.23
12 7 0.11
13 8 0.12
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (10 bp):
AATAAAATAT
Found at i:79508677 original size:24 final size:23
Alignment explanation
Indices: 79508630--79508678 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 23
79508620 AATAAAAAAT
79508630 TTTATAATATAATGAATTTTTATA
1 TTTATAATATAAT-AATTTTTATA
79508654 TTTATAATTATAAT-ATTTTATATA
1 TTTATAA-TATAATAATTTT-TATA
79508678 T
1 T
79508679 AGAATATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 5 0.22
24 12 0.52
25 6 0.26
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
TTTATAATATAATAATTTTTATA
Found at i:79508936 original size:7 final size:7
Alignment explanation
Indices: 79508924--79508951 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
79508914 TCTATATATA
79508924 CCCACAT
1 CCCACAT
79508931 CCCACAT
1 CCCACAT
79508938 CCCACAT
1 CCCACAT
79508945 CCCACAT
1 CCCACAT
79508952 TGCTTAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.57, G:0.00, T:0.14
Consensus pattern (7 bp):
CCCACAT
Found at i:79514117 original size:11 final size:11
Alignment explanation
Indices: 79514101--79514134 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
79514091 TAGTTTAGTC
79514101 CTTGAATATTT
1 CTTGAATATTT
*
79514112 CTTGAATATTC
1 CTTGAATATTT
79514123 CTTGAATTATTT
1 CTTGAA-TATTT
79514135 TTAGAGTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.26, C:0.12, G:0.09, T:0.53
Consensus pattern (11 bp):
CTTGAATATTT
Found at i:79514378 original size:38 final size:38
Alignment explanation
Indices: 79514309--79514382 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
79514299 CTCTACTGAG
*
79514309 TACATGTTAAGCATGTCTACTACTAGTGTTGAATTGAA
1 TACATGTTAAGCATGTCTACTACTAGCGTTGAATTGAA
* **
79514347 TACATGTTAAGCATGTCTATTGTTAGCGTTGAATTG
1 TACATGTTAAGCATGTCTACTACTAGCGTTGAATTG
79514383 TTCTATTACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.39
Consensus pattern (38 bp):
TACATGTTAAGCATGTCTACTACTAGCGTTGAATTGAA
Found at i:79517225 original size:11 final size:11
Alignment explanation
Indices: 79517200--79517235 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
79517190 CTCCAAAAAA
*
79517200 TTTAAACTT-T
1 TTTAAAATTAT
79517210 TTTAAAATTAT
1 TTTAAAATTAT
79517221 TTTAAAATTAT
1 TTTAAAATTAT
79517232 TTTA
1 TTTA
79517236 TATGTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTAAAATTAT
Found at i:79518334 original size:6 final size:6
Alignment explanation
Indices: 79518323--79518362 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
79518313 TTAGTTTGTT
79518323 ACCAAC ACCAAC ACCAAC ACCAAC ACCAAC ACCAAC ACCA
1 ACCAAC ACCAAC ACCAAC ACCAAC ACCAAC ACCAAC ACCA
79518363 TCCTATTCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (6 bp):
ACCAAC
Found at i:79525866 original size:46 final size:45
Alignment explanation
Indices: 79525765--79525980 Score: 166
Period size: 46 Copynumber: 4.6 Consensus size: 45
79525755 ATCTCAAGTT
* * * * *
79525765 GATGCCATGTCTCAGACATGGTCTTACACTGACTATCCTTTCGTA-GCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCATCTCG-AGGCC
*
79525813 GATGCATGTCCCAGACATATCTTACACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGCC
* * * * * * * *
79525859 GAAGCATGTCCCAAACATGTCTTATACTAGCACTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGAGGCC
* ** *
79525905 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCAAAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TC-ATCTCGAGGCC
79525953 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
79525981 AGCTCACACA
Statistics
Matches: 133, Mismatches: 28, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
45 2 0.02
46 67 0.50
47 39 0.29
48 24 0.18
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAGGCC
Found at i:79532899 original size:72 final size:72
Alignment explanation
Indices: 79532813--79532961 Score: 289
Period size: 72 Copynumber: 2.1 Consensus size: 72
79532803 TTTGCATATA
79532813 TCAAAATAAATATTAGCCATCATTCAAGGCTTAATACAAAATGAGGAATTTATCCCAATCCAACA
1 TCAAAATAAATATTAGCCATCATTCAAGGCTTAATACAAAATGAGGAATTTATCCCAATCCAACA
79532878 CATGTGG
66 CATGTGG
79532885 TCAAAATAAATATTAGCCATCATTCAAGGCTTAATACAAAATGAGGAATTTATCCCAATCCAACA
1 TCAAAATAAATATTAGCCATCATTCAAGGCTTAATACAAAATGAGGAATTTATCCCAATCCAACA
79532950 CATGTGG
66 CATGTGG
*
79532957 CCAAA
1 TCAAA
79532962 TTATAAACAC
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 76 1.00
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (72 bp):
TCAAAATAAATATTAGCCATCATTCAAGGCTTAATACAAAATGAGGAATTTATCCCAATCCAACA
CATGTGG
Found at i:79533560 original size:46 final size:45
Alignment explanation
Indices: 79533510--79533633 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 45
79533500 CGTAGTCGAT
*
79533510 GCATGTCCCAGACATGTCTTACATTGGCTTACGTCTCAAGGCCGAA
1 GCATGTCCCAGACATGTCTTACAATGGCTT-CGTCTCAAGGCCGAA
* * * * *
79533556 GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACAATGGC-TTCGTCTCAAGGCCGAA
*
79533602 GCCATGTCCTAGACATGGTCTTACAATGGCTT
1 G-CATGTCCCAGACAT-GTCTTACAATGGCTT
79533634 TCAAAATGTG
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
46 40 0.61
47 15 0.23
48 11 0.17
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACAATGGCTTCGTCTCAAGGCCGAA
Found at i:79543282 original size:39 final size:40
Alignment explanation
Indices: 79543185--79543364 Score: 201
Period size: 39 Copynumber: 4.5 Consensus size: 40
79543175 AATGATGTCC
* * *
79543185 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCG
* *
79543225 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
*
79543265 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
* *
79543304 GGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-ATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCG
*
79543343 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
79543365 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 13, Indels: 14
0.82 0.09 0.10
Matches are distributed among these distances:
38 1 0.01
39 68 0.57
40 41 0.34
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
Found at i:79543317 original size:79 final size:80
Alignment explanation
Indices: 79543185--79543364 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
79543175 AATGATGTCC
*
79543185 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCA-TTGTG
*
79543249 CGAGATACTA-ATTCCG
65 CGAGATACTATA-ACCG
* * * **
79543265 GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTGTG
*
79543327 CGAGTTACTATAACCG
65 CGAGATACTATAACCG
*
79543343 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
79543365 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
78 24 0.28
79 49 0.56
80 14 0.16
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTGTGC
GAGATACTATAACCG
Found at i:79543387 original size:78 final size:79
Alignment explanation
Indices: 79543234--79543397 Score: 201
Period size: 78 Copynumber: 2.1 Consensus size: 79
79543224 GGACTAAGAT
* **
79543234 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
79543299 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
79543313 CCGAAGGCA-TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
79543375 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
79543391 CCGAAGG
1 CCGAAGG
79543398 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
77 2 0.03
78 38 0.51
79 34 0.46
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:79551148 original size:79 final size:81
Alignment explanation
Indices: 79551012--79551196 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
79551002 TTGAATGATG
* *
79551012 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
79551076 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
79551091 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
79551153 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
79551171 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79551197 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:79551210 original size:40 final size:40
Alignment explanation
Indices: 79551013--79551196 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
79551003 TGAATGATGT
* * * *
79551013 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
79551053 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
79551093 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
79551131 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
79551172 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79551197 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:79551218 original size:79 final size:79
Alignment explanation
Indices: 79551065--79551229 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
79551055 GGACTAAGAT
* * **
79551065 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
79551130 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
79551144 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
79551207 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
79551223 CCGAAGG
1 CCGAAGG
79551230 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:79554901 original size:78 final size:78
Alignment explanation
Indices: 79554772--79554928 Score: 253
Period size: 78 Copynumber: 2.0 Consensus size: 78
79554762 TTTTCTTGTT
*
79554772 TGTAACCATCTTTAATGCTTATTGTTTTTGAATTCCATACCTGTCTTAAGCCTTAGAACGTTACA
1 TGTAACCATCTTTAATGCTTATTGTTTTTGAATTCCATACCTGTCTTAAGCCTCAGAACGTTACA
*
79554837 AACCAAAAACACC
66 AACCAAAAAAACC
* * *
79554850 TGTAACCATCTTTAATGCTTATTGTTTTTGACTTTCATACCTGTAC-TAAGCCTCAGAGCGTTAC
1 TGTAACCATCTTTAATGCTTATTGTTTTTGAATTCCATACCTGT-CTTAAGCCTCAGAACGTTAC
79554914 AAACCAAAAAAACC
65 AAACCAAAAAAACC
79554928 T
1 T
79554929 ATGTGACCTA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
78 72 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (78 bp):
TGTAACCATCTTTAATGCTTATTGTTTTTGAATTCCATACCTGTCTTAAGCCTCAGAACGTTACA
AACCAAAAAAACC
Found at i:79562032 original size:19 final size:18
Alignment explanation
Indices: 79562010--79562045 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
79562000 ACTGTGATTG
79562010 TAAAATAAATTAAGTGAAA
1 TAAAATAAATT-AGTGAAA
*
79562029 TAAATTAAATTAGTGAA
1 TAAAATAAATTAGTGAA
79562046 TTTAATATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.31
Consensus pattern (18 bp):
TAAAATAAATTAGTGAAA
Found at i:79564528 original size:16 final size:16
Alignment explanation
Indices: 79564507--79564537 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79564497 TCTTCAAGTG
*
79564507 AAGAAAGACTACGCCC
1 AAGAAAGAATACGCCC
79564523 AAGAAAGAATACGCC
1 AAGAAAGAATACGCC
79564538 AAAGGGAGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.26, G:0.19, T:0.06
Consensus pattern (16 bp):
AAGAAAGAATACGCCC
Found at i:79565048 original size:4 final size:4
Alignment explanation
Indices: 79565039--79565070 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
79565029 TGAGGAGTTG
79565039 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
79565071 GTATGTGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:79572005 original size:18 final size:18
Alignment explanation
Indices: 79571982--79572018 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
79571972 ACTTAGTAAG
79571982 CTCTAAAATAAGTTACTT
1 CTCTAAAATAAGTTACTT
79572000 CTCTAAAATAAGTTACTT
1 CTCTAAAATAAGTTACTT
79572018 C
1 C
79572019 AATTTTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (18 bp):
CTCTAAAATAAGTTACTT
Found at i:79582202 original size:48 final size:48
Alignment explanation
Indices: 79582144--79582459 Score: 183
Period size: 48 Copynumber: 6.6 Consensus size: 48
79582134 CCATATTATG
* * *
79582144 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACA
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAGA
* * *
79582192 AGAGCTAGTGTAAGA-CACGTCTGGGACAT-GCATCGGCCTCGAGATGT
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGA-GA
* * *
79582239 A-AGCCAGTGTAAGA-CATGTCTGAGACA-AGCATCGGC-T--ACGAGA
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GAGA
* * * * *
79582282 TGTG-TCAGTGTAAGACCATGTCTGGGATATGGCATCGG-AACGTATAGA
1 AGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG-AGAGA
* * * * * * * *
79582330 GGTG-TCAGTGTAAGACTATGTTTGGGAAATGGTATCGGTACAAAT-AAGTG-
1 AGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGG--C--ATCGAGAGA
* * ***
79582380 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCGTCGATTTCA
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GAGA
*
79582429 ATAG-TCAGTGTAAGACCATGTCTGGGACATG
1 AGAGCT-AGTGTAAGACCATGTCTGGGACATG
79582460 ACATTGACTT
Statistics
Matches: 208, Mismatches: 39, Indels: 41
0.72 0.14 0.14
Matches are distributed among these distances:
43 2 0.01
44 12 0.06
45 12 0.06
46 52 0.25
47 15 0.07
48 53 0.25
49 29 0.14
50 29 0.14
51 3 0.01
53 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.23
Consensus pattern (48 bp):
AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAGA
Found at i:79582248 original size:46 final size:47
Alignment explanation
Indices: 79582106--79582319 Score: 194
Period size: 46 Copynumber: 4.6 Consensus size: 47
79582096 TGTGTACTAA
* *
79582106 TGTAAGATATGTCTGGGACATGCATCGGCCAT--ATTATG-AGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-GATGTAGAGCCAG
* * ** *
79582152 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-CAAGAGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCCAG
*
79582200 TGTAAGACACGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCCAG
* * *
79582246 TGTAAGACATGTCTGAGACAAGCATCGG-CTACGAGATGT---GTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCCAG
*
79582290 TGTAAGACCATGTCTGGGATATGGCATCGG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGG
79582320 AACGTATAGA
Statistics
Matches: 141, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
44 11 0.08
45 13 0.09
46 65 0.46
47 28 0.20
48 23 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCCAG
Found at i:79585216 original size:10 final size:11
Alignment explanation
Indices: 79585196--79585220 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79585186 TTACCACTTC
79585196 TTTCTTTTTTT
1 TTTCTTTTTTT
79585207 TTTCTTTTTTT
1 TTTCTTTTTTT
79585218 TTT
1 TTT
79585221 GCCACAAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:79589974 original size:40 final size:40
Alignment explanation
Indices: 79589905--79590070 Score: 244
Period size: 40 Copynumber: 4.2 Consensus size: 40
79589895 AAACTAAGTA
* *
79589905 CCTTCGGGATTTAG-CCGGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
79589944 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
79589984 CCTTCGAGACTTAGCCCGGATATAGTAAATCACACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
79590024 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79590064 CCTTCGG
1 CCTTCGG
79590071 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 13 0.12
40 99 0.88
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79591518 original size:14 final size:14
Alignment explanation
Indices: 79591496--79591538 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
79591486 TTTCATTTTG
79591496 TAACATAAAATTAT
1 TAACATAAAATTAT
*
79591510 TAGCATAAAA-TAT
1 TAACATAAAATTAT
* *
79591523 TAACACAAAATAAT
1 TAACATAAAATTAT
79591537 TA
1 TA
79591539 TAATATGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:79591532 original size:13 final size:13
Alignment explanation
Indices: 79591496--79591534 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
79591486 TTTCATTTTG
79591496 TAACATAAAATTAT
1 TAACATAAAA-TAT
*
79591510 TAGCATAAAATAT
1 TAACATAAAATAT
*
79591523 TAACACAAAATA
1 TAACATAAAATA
79591535 ATTATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:79598200 original size:40 final size:40
Alignment explanation
Indices: 79598003--79598193 Score: 310
Period size: 40 Copynumber: 4.8 Consensus size: 40
79597993 TTCGGATTTG
*
79598003 CGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
79598043 CGGATATAGTAACTCGCACAATTGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
79598083 CGGATATAATAACTCGCACAATTGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
79598123 CGGATATAGTAACTCACACGAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
79598163 CGGATATAGTCACTAGCACAAATGCCTTCGG
1 CGGATATAGTAACTCGCACAAATGCCTTCGG
79598194 ATCTTAGTCC
Statistics
Matches: 140, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:79599642 original size:14 final size:14
Alignment explanation
Indices: 79599620--79599662 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
79599610 TTTCATTTTG
79599620 TAACATAAAATTAT
1 TAACATAAAATTAT
*
79599634 TAGCATAAAA-TAT
1 TAACATAAAATTAT
* *
79599647 TAACACAAAATAAT
1 TAACATAAAATTAT
79599661 TA
1 TA
79599663 TAATATGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:79599656 original size:13 final size:13
Alignment explanation
Indices: 79599620--79599658 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
79599610 TTTCATTTTG
79599620 TAACATAAAATTAT
1 TAACATAAAA-TAT
*
79599634 TAGCATAAAATAT
1 TAACATAAAATAT
*
79599647 TAACACAAAATA
1 TAACATAAAATA
79599659 ATTATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:79608716 original size:13 final size:13
Alignment explanation
Indices: 79608698--79608723 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79608688 ATCATGAAGA
79608698 GGGGCACAAAATT
1 GGGGCACAAAATT
79608711 GGGGCACAAAATT
1 GGGGCACAAAATT
79608724 CAAGAATGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.31, T:0.15
Consensus pattern (13 bp):
GGGGCACAAAATT
Found at i:79615247 original size:11 final size:11
Alignment explanation
Indices: 79615231--79615259 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
79615221 AAAAAGGGAT
79615231 CATTCTGAAGA
1 CATTCTGAAGA
79615242 CATTCTGAAGA
1 CATTCTGAAGA
79615253 CATTCTG
1 CATTCTG
79615260 CATTTATGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (11 bp):
CATTCTGAAGA
Found at i:79615517 original size:44 final size:45
Alignment explanation
Indices: 79615453--79615682 Score: 145
Period size: 44 Copynumber: 5.1 Consensus size: 45
79615443 TTAAGTCATC
** *
79615453 ATAGCAAACCTTATCGCTCTGAAGTTGCAGTAGAGCAGGTCGAAG
1 ATAGCAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAG
* *
79615498 -TAGCAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCA-GACTGAAG
1 ATAGCAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTC-GAAG
* ** * * * * *
79615542 ATAGC-AGATCGTGCCTCCCTGAAGTTGCAG-CGAAACAGATTGAAG
1 ATAGCAAG-TCTTATCTCTCTGAAGTTGCAGTAG-AGCAGGTCGAAG
** *
79615587 CCA-CAA-TCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGAT--AAA
1 ATAGCAAGT-CTTATCTCTCTGAAGTTGCAGTAGAGCAGG-TCGAAG
* * * *
79615630 ATTACCCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAG
1 A-TA-GCAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTC-GAAG
79615677 ATAGCA
1 ATAGCA
79615683 GATCTTGTCT
Statistics
Matches: 138, Mismatches: 31, Indels: 32
0.69 0.15 0.16
Matches are distributed among these distances:
43 5 0.04
44 62 0.45
45 36 0.26
46 31 0.22
47 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (45 bp):
ATAGCAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAG
Found at i:79615566 original size:45 final size:44
Alignment explanation
Indices: 79615453--79615713 Score: 190
Period size: 45 Copynumber: 5.8 Consensus size: 44
79615443 TTAAGTCATC
* * * * *
79615453 ATAGCAAACCTTATCGCTCTGAAGTTGCAGTAGAGCAG-GTCGAAG
1 ATAGC-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAG
*
79615498 -TAGCAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAG
1 ATAGCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* ** * * * *
79615542 ATAGCAGATCGTGCCTCCCTGAAGTTGCAGCGAAACAGATTGAAG
1 ATAGCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
** * * *
79615587 CCA-CAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGA-T-AAA
1 ATAGCAAT-CTTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAG
*
79615630 ATTACCCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
1 A-TA-GCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
* * * *
79615677 ATAGCAGATCTTGTCTCCTTGAAGTTACATTGGAGCA
1 ATAGCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCA
79615714 AATCAAAGCT
Statistics
Matches: 170, Mismatches: 33, Indels: 26
0.74 0.14 0.11
Matches are distributed among these distances:
43 6 0.04
44 59 0.35
45 67 0.39
46 34 0.20
47 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (44 bp):
ATAGCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
Found at i:79615701 original size:135 final size:133
Alignment explanation
Indices: 79615461--79615702 Score: 385
Period size: 135 Copynumber: 1.8 Consensus size: 133
79615451 TCATAGCAAA
** * *
79615461 CCTTATCGCTCTGAAGTTGCAGTAGAGCAGGTCGAAGTAGCAAGTCTTATCTCTCTGAAGTTGCA
1 CCTTATCGCTCTGAAGTTGCAGTAGAGCAGGTAAAAGTACCAAGTCTTATCTCCCTGAAGTTGCA
79615526 GTGGAGCAGACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTGCAGCGAAACAGATTGAAGCCAC
66 GTGGAGCAGACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTGCAGCGAAACAGATTGAAGCCAC
79615591 AAT
131 AAT
* *
79615594 CCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTTATCTCCCTGAAGTTG
1 CCTTATCGCTCTGAAGTTGCAGTAGAGCAGG-TAAAAGTA-CCAAGTCTTATCTCCCTGAAGTTG
* * *
79615659 CAGTGGAGCAGACTGAAGATAGCAGATCTTGTCTCCTTGAAGTT
64 CAGTGGAGCAGACTGAAGATAGCAGATCGTGCCTCCCTGAAGTT
79615703 ACATTGGAGC
Statistics
Matches: 98, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
133 30 0.31
134 5 0.05
135 63 0.64
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (133 bp):
CCTTATCGCTCTGAAGTTGCAGTAGAGCAGGTAAAAGTACCAAGTCTTATCTCCCTGAAGTTGCA
GTGGAGCAGACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTGCAGCGAAACAGATTGAAGCCAC
AAT
Found at i:79615743 original size:135 final size:133
Alignment explanation
Indices: 79615469--79615749 Score: 341
Period size: 135 Copynumber: 2.1 Consensus size: 133
79615459 AACCTTATCG
** * *
79615469 CTCTGAAGTTGCAGTAGAGCAGGTCGAAGTAGCAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCA
1 CTCTGAAGTTGCAGTAGAGCAGGTAAAAGTACCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * ** *
79615534 GACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTGCAGCGAAACAGATTGAAGCCACAATCCTTA
66 GACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTACAGCGAAACAAATCAAAGCCACAATCCTCA
79615599 TCT
131 TCT
*
79615602 CTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTTATCTCCCTGAAGTTGCAGTGGAG
1 CTCTGAAGTTGCAGTAGAGCAGG-TAAAAGTA-CCAAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* * * ** * * * *
79615667 CAGACTGAAGATAGCAGATCTTGTCTCCTTGAAGTTACATTGGAGCAAATCAAAGCTATAAGT-C
64 CAGACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTACAGCGAAACAAATCAAAGCCACAA-TCC
79615731 TCATCT
128 TCATCT
79615737 -TCCTGAAGTTGCA
1 CT-CTGAAGTTGCA
79615750 ATAGGACTAC
Statistics
Matches: 125, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
133 23 0.18
134 6 0.05
135 95 0.76
136 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (133 bp):
CTCTGAAGTTGCAGTAGAGCAGGTAAAAGTACCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
GACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTACAGCGAAACAAATCAAAGCCACAATCCTCA
TCT
Found at i:79630592 original size:57 final size:57
Alignment explanation
Indices: 79630523--79630636 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
79630513 TCACTTAATA
79630523 AGATTTTATTCAAAAATAAAGCAAATACATACAATATAGTAGTACAAGATCTTTATT
1 AGATTTTATTCAAAAATAAAGCAAATACATACAATATAGTAGTACAAGATCTTTATT
79630580 AGATTTTATTCAAAAATAAAGCAAATACATACAATATAGTAGTACAAGATCTTTATT
1 AGATTTTATTCAAAAATAAAGCAAATACATACAATATAGTAGTACAAGATCTTTATT
79630637 TTCTTTTTCT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (57 bp):
AGATTTTATTCAAAAATAAAGCAAATACATACAATATAGTAGTACAAGATCTTTATT
Found at i:79634823 original size:7 final size:6
Alignment explanation
Indices: 79634807--79634853 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
79634797 ATATTACTTT
* *
79634807 TAAAAG TAAAAA TTAAAAA TAAAAT TAAAAA CTAAAAA T-AAAA TAAA
1 TAAAAA TAAAAA -TAAAAA TAAAAA TAAAAA -TAAAAA TAAAAA TAAA
79634854 TCTAAAAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
5 5 0.14
6 18 0.51
7 12 0.34
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (6 bp):
TAAAAA
Found at i:79634829 original size:19 final size:18
Alignment explanation
Indices: 79634807--79634853 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 18
79634797 ATATTACTTT
*
79634807 TAAAAGTAAAAATTAAAAA
1 TAAAA-TAAAAACTAAAAA
79634826 TAAAATTAAAAACTAAAAA
1 TAAAA-TAAAAACTAAAAA
79634845 TAAAATAAA
1 TAAAATAAA
79634854 TCTAAAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (18 bp):
TAAAATAAAAACTAAAAA
Found at i:79648877 original size:17 final size:17
Alignment explanation
Indices: 79648855--79648891 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
79648845 CTCAAGGAAA
79648855 GACTTAAGAAATGGCAT
1 GACTTAAGAAATGGCAT
79648872 GACTTAAGAAATGGCAT
1 GACTTAAGAAATGGCAT
79648889 GAC
1 GAC
79648892 AAGCACATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (17 bp):
GACTTAAGAAATGGCAT
Found at i:79655417 original size:25 final size:25
Alignment explanation
Indices: 79655370--79655418 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
79655360 TTGGCTTGAC
**
79655370 ATTTACTAAGCAATATCGGATATTT
1 ATTTACTAAGCAATATCAAATATTT
* *
79655395 ATTTATTAGGCAATATCAAATATT
1 ATTTACTAAGCAATATCAAATATT
79655419 CAAATTATTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (25 bp):
ATTTACTAAGCAATATCAAATATTT
Found at i:79657479 original size:13 final size:13
Alignment explanation
Indices: 79657461--79657489 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
79657451 CTATCCGGGC
79657461 TAAATCCTTTCTA
1 TAAATCCTTTCTA
79657474 TAAATCCTTTCTA
1 TAAATCCTTTCTA
79657487 TAA
1 TAA
79657490 TGAGGCCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (13 bp):
TAAATCCTTTCTA
Found at i:79662604 original size:21 final size:22
Alignment explanation
Indices: 79662558--79662611 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
79662548 TGCAGGGCTC
*
79662558 ACACACCCGTGTGGCCTGAGGG
1 ACACACCCGTGTGCCCTGAGGG
79662580 ACACACCCGTGTGACCCT-A-GG
1 ACACACCCGTGTG-CCCTGAGGG
*
79662601 ACACGCCCGTG
1 ACACACCCGTG
79662612 CTGCAGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 12 0.41
22 14 0.48
23 3 0.10
ACGTcount: A:0.20, C:0.37, G:0.30, T:0.13
Consensus pattern (22 bp):
ACACACCCGTGTGCCCTGAGGG
Found at i:79667543 original size:15 final size:15
Alignment explanation
Indices: 79667519--79667575 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
79667509 AATATATTTG
*
79667519 AAATAATTTAATATA
1 AAATATTTTAATATA
*
79667534 AAATATTTT-ATTTCA
1 AAATATTTTAATAT-A
*
79667549 AAATATAATTTAAAATA
1 AAATAT--TTTAATATA
79667566 AAATATTTTA
1 AAATATTTTA
79667576 TTTTAAATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 3 0.09
15 19 0.56
17 10 0.29
18 2 0.06
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATATTTTAATATA
Found at i:79667567 original size:32 final size:32
Alignment explanation
Indices: 79667521--79667595 Score: 109
Period size: 32 Copynumber: 2.4 Consensus size: 32
79667511 TATATTTGAA
*
79667521 ATAATTTAATATAAAATATTTTATTTCAAAAT
1 ATAATTTAAAATAAAATATTTTATTTCAAAAT
* *
79667553 ATAATTTAAAATAAAATATTTTATTTTAAATT
1 ATAATTTAAAATAAAATATTTTATTTCAAAAT
79667585 AT-A-TTAAAATA
1 ATAATTTAAAATA
79667596 TATGATGGGC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 8 0.20
31 1 0.03
32 31 0.77
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (32 bp):
ATAATTTAAAATAAAATATTTTATTTCAAAAT
Found at i:79673802 original size:24 final size:24
Alignment explanation
Indices: 79673775--79673827 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
79673765 TGAAAAGGTA
79673775 AAAAGGATTTTAAAGTGAATGAAG
1 AAAAGGATTTTAAAGTGAATGAAG
79673799 AAAAGGATTTTAAAGTGAATGAAG
1 AAAAGGATTTTAAAGTGAATGAAG
79673823 AAAAG
1 AAAAG
79673828 CTTACACGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.53, C:0.00, G:0.25, T:0.23
Consensus pattern (24 bp):
AAAAGGATTTTAAAGTGAATGAAG
Found at i:79676148 original size:33 final size:30
Alignment explanation
Indices: 79676101--79676168 Score: 75
Period size: 33 Copynumber: 2.2 Consensus size: 30
79676091 AATTTCACAA
*
79676101 TATTATTTATTT-AAATTCAATCTAATATTAAT
1 TATTATTTATTTAAAATT-AAACTAATA-T-AT
*
79676133 TATTATGTTTTTTAAAATTAAACTAATATAT
1 TATTAT-TTATTTAAAATTAAACTAATATAT
79676164 TATTA
1 TATTA
79676169 AATTTTACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
31 7 0.22
32 7 0.22
33 13 0.41
34 5 0.16
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.53
Consensus pattern (30 bp):
TATTATTTATTTAAAATTAAACTAATATAT
Found at i:79676783 original size:13 final size:13
Alignment explanation
Indices: 79676765--79676791 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79676755 AAAATGGTCT
79676765 ATTTGTAGGTTAA
1 ATTTGTAGGTTAA
79676778 ATTTGTAGGTTAA
1 ATTTGTAGGTTAA
79676791 A
1 A
79676792 GAATATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (13 bp):
ATTTGTAGGTTAA
Found at i:79688390 original size:24 final size:22
Alignment explanation
Indices: 79688352--79688411 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 22
79688342 TGTGTAAATT
79688352 ATATATATTAATTATGTCAA-AA
1 ATATATATTAATTAT-TCAACAA
79688374 ATATATATTAATTTTATTCAACAA
1 ATATATATTAA--TTATTCAACAA
*
79688398 A-ATATTTTTAATTA
1 ATATA-TATTAATTA
79688412 AAAATTTACC
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 14 0.42
23 7 0.21
24 12 0.36
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (22 bp):
ATATATATTAATTATTCAACAA
Found at i:79688556 original size:23 final size:23
Alignment explanation
Indices: 79688530--79688573 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
79688520 AATATTTCAA
79688530 TATTT-TTATAATAATT-AAAATAT
1 TATTTCTT-TAAT-ATTCAAAATAT
79688553 TATTTCTTTAATATTCAAAAT
1 TATTTCTTTAATATTCAAAAT
79688574 CAAACATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 3 0.16
23 14 0.74
24 2 0.11
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (23 bp):
TATTTCTTTAATATTCAAAATAT
Found at i:79688690 original size:27 final size:27
Alignment explanation
Indices: 79688657--79688728 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 27
79688647 TATTTAATGT
* *
79688657 TTAAAAAGTATGTCTTACATTTTTATAA
1 TTAAAAA-TACGTATTACATTTTTATAA
* *
79688685 TTAAAAATGCGTATTGCATTTTTATAA
1 TTAAAAATACGTATTACATTTTTATAA
79688712 TTAAAAATATC-TATTAC
1 TTAAAAATA-CGTATTAC
79688729 CAATTTCAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 29 0.78
28 8 0.22
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.44
Consensus pattern (27 bp):
TTAAAAATACGTATTACATTTTTATAA
Found at i:79691961 original size:28 final size:28
Alignment explanation
Indices: 79691904--79691961 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
79691894 TCACTTCTCT
* * * *
79691904 CAGATTGGTACCTATAGTTTTTTTATCC
1 CAGATTGGTACCCAAACTTTTTTTAGCC
*
79691932 CAGATTGGTACCCAAACTTTTTTTCGCC
1 CAGATTGGTACCCAAACTTTTTTTAGCC
79691960 CA
1 CA
79691962 CTGGTTTAGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (28 bp):
CAGATTGGTACCCAAACTTTTTTTAGCC
Found at i:79692838 original size:10 final size:9
Alignment explanation
Indices: 79692813--79693056 Score: 84
Period size: 8 Copynumber: 28.1 Consensus size: 9
79692803 CTTCATTGTT
79692813 TATG-TATG
1 TATGTTATG
79692821 TATGTTATG
1 TATGTTATG
79692830 TATTGTTATG
1 TA-TGTTATG
*
79692840 CATG-TATG
1 TATGTTATG
79692848 TTATGTTTAATG
1 -TATG-TT-ATG
79692860 TTATGTT-TG
1 -TATGTTATG
* *
79692869 TATATTTTG
1 TATGTTATG
*
79692878 TATGTCATG
1 TATGTTATG
*
79692887 T-T-TAATG
1 TATGTTATG
79692894 TATGTATAT-
1 TATGT-TATG
*
79692903 TATGTGGTATAT
1 TATGT--TAT-G
*
79692915 TACTATTAT-
1 TA-TGTTATG
79692924 T-TG-TATG
1 TATGTTATG
79692931 -ACTGTTTAT-
1 TA-TG-TTATG
79692940 TAATGTTTATG
1 T-ATGT-TATG
79692951 TATG-TATG
1 TATGTTATG
79692959 TATG-TATG
1 TATGTTATG
*
79692967 TAT-TCATG
1 TATGTTATG
*
79692975 TAT-ATATG
1 TATGTTATG
79692983 TATG-TATG
1 TATGTTATG
79692991 TATG-TATG
1 TATGTTATG
79692999 TATG-TATG
1 TATGTTATG
*
79693007 TACG-TATG
1 TATGTTATG
79693015 TATG-TATG
1 TATGTTATG
* *
79693023 GATG-GATG
1 TATGTTATG
*
79693031 GATG-TATG
1 TATGTTATG
79693039 TATG-TATG
1 TATGTTATG
79693047 TATGTTATG
1 TATGTTATG
79693056 T
1 T
79693057 TTAGTACTGT
Statistics
Matches: 190, Mismatches: 20, Indels: 51
0.73 0.08 0.20
Matches are distributed among these distances:
6 3 0.02
7 6 0.03
8 102 0.54
9 35 0.18
10 24 0.13
11 8 0.04
12 10 0.05
13 2 0.01
ACGTcount: A:0.25, C:0.02, G:0.21, T:0.52
Consensus pattern (9 bp):
TATGTTATG
Found at i:79692844 original size:23 final size:24
Alignment explanation
Indices: 79692807--79692853 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
79692797 ATGTTTCTTC
*
79692807 ATTGTTTATGTATGTATGTTATGT
1 ATTGTTTATGCATGTATGTTATGT
79692831 ATTG-TTATGCATGTATGTTATGT
1 ATTGTTTATGCATGTATGTTATGT
79692854 TTAATGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.21, C:0.02, G:0.21, T:0.55
Consensus pattern (24 bp):
ATTGTTTATGCATGTATGTTATGT
Found at i:79692956 original size:4 final size:4
Alignment explanation
Indices: 79692947--79693056 Score: 150
Period size: 4 Copynumber: 27.2 Consensus size: 4
79692937 TATTAATGTT
*
79692947 TATG TATG TATG TATG TATG TAT- TCATG TATA TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG T-ATG TATG TATG TATG TATG TATG
* * * *
79692995 TATG TATG TATG TACG TATG TATG TATG GATG GATG GATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
79693043 TATG TATG TTATG T
1 TATG TATG -TATG T
79693057 TTAGTACTGT
Statistics
Matches: 97, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
3 1 0.01
4 91 0.94
5 5 0.05
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.47
Consensus pattern (4 bp):
TATG
Found at i:79694851 original size:3 final size:3
Alignment explanation
Indices: 79694843--79694870 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
79694833 AGCCATCTAA
79694843 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
79694871 TGCATTTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:79696416 original size:13 final size:14
Alignment explanation
Indices: 79696397--79696428 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
79696387 TGGATGGTTT
79696397 TATTTTGTTGGATG
1 TATTTTGTTGGATG
79696411 -ATTTTGTTGGATG
1 TATTTTGTTGGATG
79696424 TATTT
1 TATTT
79696429 CGATGATGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.16, C:0.00, G:0.25, T:0.59
Consensus pattern (14 bp):
TATTTTGTTGGATG
Found at i:79713487 original size:43 final size:43
Alignment explanation
Indices: 79713428--79713513 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
79713418 GATATATGTG
* *
79713428 GCATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
* *
79713471 GCATCCGAGCTTGTTGAGTGGTCCGAGTTCATAATGGATGCGA
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
79713514 TACATGTGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
Found at i:79715561 original size:10 final size:10
Alignment explanation
Indices: 79715546--79715574 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
79715536 AGATGCAAGA
79715546 TGTTGAAAAT
1 TGTTGAAAAT
79715556 TGTTGAAAAT
1 TGTTGAAAAT
79715566 TGTTGAAAA
1 TGTTGAAAA
79715575 AACAGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (10 bp):
TGTTGAAAAT
Found at i:79715593 original size:12 final size:13
Alignment explanation
Indices: 79715573--79715601 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
79715563 AATTGTTGAA
79715573 AAAACAGAAAAAG
1 AAAACAGAAAAAG
79715586 AAAA-AGAAAAAG
1 AAAACAGAAAAAG
79715598 AAAA
1 AAAA
79715602 TGGCAAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.83, C:0.03, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAACAGAAAAAG
Found at i:79717937 original size:87 final size:87
Alignment explanation
Indices: 79717790--79718040 Score: 378
Period size: 87 Copynumber: 2.9 Consensus size: 87
79717780 AGATTAAAAT
** * * *
79717790 TCAGTGAATTCATCAAGTCCGTCTCAATAAAACCACCCAAACTTTAGTATATGAGCTCATTAAGA
1 TCAGTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTTTGGGATATGAGTTCATTAAGA
*
79717855 GTAAGAAACTTAACCTCACATG
66 GTAAGAAACTCAACCTCACATG
* *
79717877 TCAGTGAATTCATCAAGTCCGTCTCAATAGGATCACTCAAACTTTGGGATATGAGTTCATTAAGA
1 TCAGTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTTTGGGATATGAGTTCATTAAGA
*
79717942 GTAAGAAACTCAACCTCATATG
66 GTAAGAAACTCAACCTCACATG
* * *
79717964 TCGGTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTTTGGGCTATGAATTCATTAAGA
1 TCAGTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTTTGGGATATGAGTTCATTAAGA
*
79718029 GTAA-TAACTCAA
66 GTAAGAAACTCAA
79718041 TCTTATGCAT
Statistics
Matches: 149, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
86 7 0.05
87 142 0.95
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (87 bp):
TCAGTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTTTGGGATATGAGTTCATTAAGA
GTAAGAAACTCAACCTCACATG
Found at i:79720614 original size:46 final size:46
Alignment explanation
Indices: 79720564--79720739 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
79720554 TGTTTGGGCA
79720564 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *** * * * *
79720610 TCCGAACTCATTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
79720657 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
79720703 -CTCG-ACGTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAAC-TCGTTGAGTTGAGTCCGAGTTCACTTATGG
79720740 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.64
47 36 0.34
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:79720719 original size:93 final size:93
Alignment explanation
Indices: 79720560--79720731 Score: 285
Period size: 93 Copynumber: 1.8 Consensus size: 93
79720550 AGGATGTTTG
*
79720560 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
79720625 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
79720653 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCG-ACGTCGTTG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAAC-TCATTG
79720716 AGTTGAGTCCGAGTTC
64 AGTTGAGTCCGAGTTC
79720732 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
92 3 0.04
93 71 0.96
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:79723695 original size:15 final size:15
Alignment explanation
Indices: 79723675--79723743 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
79723665 ATATCTTGGG
79723675 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
79723690 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
79723705 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
79723720 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
79723735 TTTCTTTAT
1 TTTCTTTAT
79723744 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:79723744 original size:30 final size:30
Alignment explanation
Indices: 79723666--79723753 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
79723656 CATAGTATCA
* * * *
79723666 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
79723696 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
79723726 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
79723754 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:79730394 original size:38 final size:38
Alignment explanation
Indices: 79730352--79730534 Score: 222
Period size: 38 Copynumber: 4.8 Consensus size: 38
79730342 ATACTAGCAA
* * *
79730352 TAAGCCTACTAGGCACTAAGCTTGAATAATACCGACAC
1 TAAGCCTACTAGGCACAAAGCCTGAATAACACCGACAC
* * * *
79730390 TAAGCCTACTAGGCATAAAACCTGAATAACACTGGCAC
1 TAAGCCTACTAGGCACAAAGCCTGAATAACACCGACAC
* * *
79730428 TAAGCCTACTAGGCAAAAAGCCTGAATAACGCCGGCAC
1 TAAGCCTACTAGGCACAAAGCCTGAATAACACCGACAC
** * *
79730466 TAAGCCTGTTAGGCTCAAAGCCCGAATAACACCGACAC
1 TAAGCCTACTAGGCACAAAGCCTGAATAACACCGACAC
* *
79730504 TAAGCCTGCTAGGCACAAAGCTTGAATAACA
1 TAAGCCTACTAGGCACAAAGCCTGAATAACA
79730535 ATATAATTCA
Statistics
Matches: 123, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 123 1.00
ACGTcount: A:0.37, C:0.27, G:0.18, T:0.17
Consensus pattern (38 bp):
TAAGCCTACTAGGCACAAAGCCTGAATAACACCGACAC
Found at i:79731928 original size:27 final size:27
Alignment explanation
Indices: 79731890--79731949 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
79731880 GAGAAAATCT
* *
79731890 GAATAGATCACCTTCATGGTGTACTCG
1 GAATGGATCACCTTCATGGCGTACTCG
** *
79731917 GAATGGATCACCTTTGTGGCGTACTCT
1 GAATGGATCACCTTCATGGCGTACTCG
79731944 GAATGG
1 GAATGG
79731950 GTTGCCTTAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (27 bp):
GAATGGATCACCTTCATGGCGTACTCG
Found at i:79738147 original size:18 final size:19
Alignment explanation
Indices: 79738113--79738150 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
79738103 ATTACAAAAA
79738113 AAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
79738132 AAAAATTCTAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
79738150 A
1 A
79738151 TTTTTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:79743955 original size:19 final size:20
Alignment explanation
Indices: 79743919--79743956 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
79743909 AACATTAGAT
* *
79743919 TTTTTTAAAGTTTTAATATA
1 TTTTTTAAAGATTAAATATA
79743939 TTTTTTAAA-ATTAAATAT
1 TTTTTTAAAGATTAAATAT
79743957 TCAAAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
TTTTTTAAAGATTAAATATA
Found at i:79744157 original size:41 final size:41
Alignment explanation
Indices: 79744097--79744177 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
79744087 TTGAGATAGT
79744097 TGATTATCTAATTTGATCTCATTCTAAAATCTAATAAATTA
1 TGATTATCTAATTTGATCTCATTCTAAAATCTAATAAATTA
* *
79744138 TGATTATCTAATTTTATCTCATTTTAAAATCTAATAAATT
1 TGATTATCTAATTTGATCTCATTCTAAAATCTAATAAATT
79744178 GGATGAGGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47
Consensus pattern (41 bp):
TGATTATCTAATTTGATCTCATTCTAAAATCTAATAAATTA
Found at i:79758699 original size:94 final size:94
Alignment explanation
Indices: 79758538--79758723 Score: 345
Period size: 94 Copynumber: 2.0 Consensus size: 94
79758528 TATATCACCC
* *
79758538 AATATTTCTTCCTGTATCTAGATGCTAACAAATCATTATTTGAGTAGTTAATTTTATGAGTAGAG
1 AATATTTCTTCCTGTATCTAGATGCTAACAAATCATGATTTGAATAGTTAATTTTATGAGTAGAG
79758603 TAAGTTCAATTCCATAAAATAATTTAAAA
66 TAAGTTCAATTCCATAAAATAATTTAAAA
*
79758632 AATATTTCTTCCTGTATTTAGATGCTAACAAATCATGATTTGAATAGTTAATTTTATGAGTAGAG
1 AATATTTCTTCCTGTATCTAGATGCTAACAAATCATGATTTGAATAGTTAATTTTATGAGTAGAG
79758697 TAAGTTCAATTCCATAAAATAATTTAA
66 TAAGTTCAATTCCATAAAATAATTTAA
79758724 CTTCCCTATT
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 89 1.00
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (94 bp):
AATATTTCTTCCTGTATCTAGATGCTAACAAATCATGATTTGAATAGTTAATTTTATGAGTAGAG
TAAGTTCAATTCCATAAAATAATTTAAAA
Found at i:79770759 original size:34 final size:34
Alignment explanation
Indices: 79770711--79770793 Score: 116
Period size: 34 Copynumber: 2.5 Consensus size: 34
79770701 GTGAGGGCTA
79770711 ACAGTAGC-GATATCAGTGAAGGCCTTAGCCCAAT
1 ACAGTAGCAG-TATCAGTGAAGGCCTTAGCCCAAT
**
79770745 ACAGTAGCAGTATCAGTGTGGGCCTTAGCCCAAT
1 ACAGTAGCAGTATCAGTGAAGGCCTTAGCCCAAT
*
79770779 TCAGTA-CAGTATCAG
1 ACAGTAGCAGTATCAG
79770794 AAATGCATAC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
33 9 0.20
34 35 0.78
35 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (34 bp):
ACAGTAGCAGTATCAGTGAAGGCCTTAGCCCAAT
Found at i:79773113 original size:13 final size:13
Alignment explanation
Indices: 79773095--79773121 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79773085 ACTCAGAGTT
79773095 GTTTGTTTTCGCA
1 GTTTGTTTTCGCA
79773108 GTTTGTTTTCGCA
1 GTTTGTTTTCGCA
79773121 G
1 G
79773122 ATCATAGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.15, G:0.26, T:0.52
Consensus pattern (13 bp):
GTTTGTTTTCGCA
Found at i:79774013 original size:33 final size:33
Alignment explanation
Indices: 79773952--79774047 Score: 106
Period size: 33 Copynumber: 2.9 Consensus size: 33
79773942 GAACAGTCTA
*
79773952 GGCCTAAGCCCATATCAGTAGC-GATATCAGTAAG
1 GGCCTTAGCCCA-ATCAGTAGCAG-TATCAGTAAG
* **
79773986 GGCCTTAGCCCAATCAGTAGCAGTATCAATGTG
1 GGCCTTAGCCCAATCAGTAGCAGTATCAGTAAG
*
79774019 AGCCTTAGCCCAATTCAGTA-CAGTATCAG
1 GGCCTTAGCCCAA-TCAGTAGCAGTATCAG
79774048 AAATGCATAC
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
33 36 0.67
34 18 0.33
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (33 bp):
GGCCTTAGCCCAATCAGTAGCAGTATCAGTAAG
Found at i:79781827 original size:22 final size:22
Alignment explanation
Indices: 79781791--79781836 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
79781781 TTTATTTTTC
* *
79781791 TTATTCTTTCTTTCCTTCTTCT
1 TTATTCTTTCTTTCCCTCATCT
79781813 TTATTCTCTTC-TTCCCTCATCT
1 TTATTCT-TTCTTTCCCTCATCT
79781835 TT
1 TT
79781837 TCTCCCCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.07, C:0.30, G:0.00, T:0.63
Consensus pattern (22 bp):
TTATTCTTTCTTTCCCTCATCT
Found at i:79783598 original size:21 final size:21
Alignment explanation
Indices: 79783559--79783598 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
79783549 CTGTGCTCAG
* *
79783559 AGGTTCGACAGTCTTGATGCA
1 AGGTTCGACAGTATCGATGCA
*
79783580 AGGTTCGATAGTATCGATG
1 AGGTTCGACAGTATCGATG
79783599 AGACTTTGTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (21 bp):
AGGTTCGACAGTATCGATGCA
Found at i:79786973 original size:29 final size:30
Alignment explanation
Indices: 79786905--79786975 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
79786895 AATTTTAAAA
* **
79786905 TTATACATGAACTATAGTTTGATATGTAATT
1 TTATACATGAACTATAATTT-ATATACAATT
* *
79786936 GTATACATGAACTTTAATTT-TATACAATT
1 TTATACATGAACTATAATTTATATACAATT
79786965 TTATACATGAA
1 TTATACATGAA
79786976 ATTTTGATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 17 0.50
31 17 0.50
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (30 bp):
TTATACATGAACTATAATTTATATACAATT
Found at i:79787265 original size:22 final size:21
Alignment explanation
Indices: 79787235--79787275 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
79787225 TCCACAAACG
*
79787235 TAGCCATGATCATTCATAAGGT
1 TAGCCATGA-AATTCATAAGGT
*
79787257 TAGCTATGAAATTCATAAG
1 TAGCCATGAAATTCATAAG
79787276 TTTCTTTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.32
Consensus pattern (21 bp):
TAGCCATGAAATTCATAAGGT
Found at i:79791347 original size:24 final size:23
Alignment explanation
Indices: 79791306--79791357 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
79791296 GTAGATCGGC
*
79791306 AAAAGCTGAAATGCCGAAATGCT
1 AAAAGCTGAAATGCCGAAAAGCT
*
79791329 GAAAAGCTGGAAA-GTCGAAAAGCT
1 -AAAAGCT-GAAATGCCGAAAAGCT
79791353 AAAAG
1 AAAAG
79791358 TTTGGCTGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 5 0.20
24 16 0.64
25 4 0.16
ACGTcount: A:0.48, C:0.13, G:0.25, T:0.13
Consensus pattern (23 bp):
AAAAGCTGAAATGCCGAAAAGCT
Found at i:79791613 original size:29 final size:29
Alignment explanation
Indices: 79791581--79791643 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
79791571 GTATGTGATA
*
79791581 TGGGCGTAATGGGCCATATGAATATGAAT
1 TGGGCGTAATGGGCCATACGAATATGAAT
** * *
79791610 TGGGCGTGGTGGGCTATACGAATGTGAAT
1 TGGGCGTAATGGGCCATACGAATATGAAT
79791639 TGGGC
1 TGGGC
79791644 CCGACGGGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.11, G:0.38, T:0.27
Consensus pattern (29 bp):
TGGGCGTAATGGGCCATACGAATATGAAT
Found at i:79798729 original size:12 final size:12
Alignment explanation
Indices: 79798712--79798737 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
79798702 TGACCGCACC
79798712 CCCTAACCAAAG
1 CCCTAACCAAAG
79798724 CCCTAACCAAAG
1 CCCTAACCAAAG
79798736 CC
1 CC
79798738 ACGTTACAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.46, G:0.08, T:0.08
Consensus pattern (12 bp):
CCCTAACCAAAG
Found at i:79800348 original size:79 final size:82
Alignment explanation
Indices: 79800237--79800421 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
79800227 GCTACTCGTT
* *
79800237 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
79800300 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
79800317 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
79800380 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
79800397 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79800422 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:79800421 original size:40 final size:40
Alignment explanation
Indices: 79800218--79800421 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
79800208 CGGAATTTAA
** *
79800218 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
79800258 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
79800298 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
79800337 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
79800377 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
79800417 CCGGA
1 CCGGA
79800422 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:79807550 original size:40 final size:39
Alignment explanation
Indices: 79807418--79807603 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 39
79807408 GCTACTCGTT
* *
79807418 CAAATGCCTTCGGGACAATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGAC-TTAGCCCGGAT-TAGTAACTCGCA
*
79807459 CAAATGCCTTCGGGACTTAACCC-GATTAGTAACTCGCCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCG-CA
*
79807498 CAAATGCCTTCGGG-CTTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGAC-TTAGCCCGG-ATTAGTAACTCGCA
* * * *
79807538 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
79807579 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79807604 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
38 11 0.09
39 28 0.22
40 47 0.38
41 39 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:79812617 original size:27 final size:27
Alignment explanation
Indices: 79812600--79812723 Score: 203
Period size: 27 Copynumber: 4.6 Consensus size: 27
79812590 ATATTAAGTC
*
79812600 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
79812627 TGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
79812654 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
*
79812682 CGCACACTTAGTGCTACATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
79812709 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79812724 GTACAATTTA
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 65 0.71
28 27 0.29
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:79812706 original size:55 final size:54
Alignment explanation
Indices: 79812600--79812723 Score: 203
Period size: 55 Copynumber: 2.3 Consensus size: 54
79812590 ATATTAAGTC
* * * *
79812600 CGCACACTCAGTGCTATATAATCAACTTGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACT
79812654 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAACT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAACT
79812709 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79812724 GTACAATTTA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
54 21 0.32
55 44 0.68
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:79820709 original size:28 final size:28
Alignment explanation
Indices: 79820646--79820796 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
79820636 ATATTAAGTC
*
79820646 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
79820673 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
79820701 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
79820729 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
79820757 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
79820786 CGCACACTTAG
1 CGCACACTTAG
79820797 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.19
28 76 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:79825586 original size:40 final size:40
Alignment explanation
Indices: 79825492--79825636 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
79825482 TACTCGAATG
*
79825492 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
79825533 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
79825573 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
79825613 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
79825637 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:79831280 original size:48 final size:48
Alignment explanation
Indices: 79831209--79831586 Score: 281
Period size: 48 Copynumber: 7.9 Consensus size: 48
79831199 TAAATTGTCT
* *
79831209 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * *** * *
79831257 ATGCCATGTCCCGGACATGGTCTTACACTTGCTCTTGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * * * * *** *
79831305 ATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAAATTGTGGACG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * **
79831353 ATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATATCAACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
** * * * *
79831401 ATTTCATGTCCTAGACATGGCCTTACACTAGCTCACATGTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * ** *** * *
79831449 ATGCCATGTCCCAAACATGATCTTACATTATTTCTTGTTTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * * * * * * **
79831497 CTGCCATGTTCCAAACATTGTCTTACAGTGGCTCTCAAAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCAC-ATATCAAGGCCG
* *
79831545 ATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
79831587 CCCAATTGTC
Statistics
Matches: 242, Mismatches: 86, Indels: 4
0.73 0.26 0.01
Matches are distributed among these distances:
47 3 0.01
48 238 0.98
49 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
Found at i:79831336 original size:96 final size:96
Alignment explanation
Indices: 79831209--79831573 Score: 338
Period size: 96 Copynumber: 3.8 Consensus size: 96
79831199 TAAATTGTCT
* * *
79831209 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGCCGATGCCATGTCCCGGACA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
*
79831274 TGGTCTTACACTTGCTCTTGTCTCAATGCCG
66 TGGTCTTACACTTGCTCTTGTATCAATGCCG
* * * ** * * *
79831305 ATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAAATTGTGGACGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
* * * *** **
79831370 TGGTCTTACAGTAGCACACATATCAACACCG
66 TGGTCTTACACTTGCTCTTGTATCAATGCCG
** * * * * *
79831401 ATTTCATGTCCTAGACATGGCCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
* ** *
79831466 TGATCTTACA-TTATTTCTTGTTTCAATGCCG
66 TGGTCTTACACTT-GCTCTTGTATCAATGCCG
* * * * * ** * *
79831497 CTGCCATGTTCCAAACATTGTCTTACAGTGGCTCTCAAAAT-GTGGCCGATGCCATGTCCTAGAC
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCAC-ATGTCGAGGCCGATGCCATGTCCCAGAC
79831561 ATGGTCTTACACT
65 ATGGTCTTACACT
79831574 AGCACACATA
Statistics
Matches: 204, Mismatches: 62, Indels: 5
0.75 0.23 0.02
Matches are distributed among these distances:
95 1 0.00
96 200 0.98
97 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (96 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
TGGTCTTACACTTGCTCTTGTATCAATGCCG
Found at i:79831473 original size:144 final size:144
Alignment explanation
Indices: 79831209--79831475 Score: 345
Period size: 144 Copynumber: 1.9 Consensus size: 144
79831199 TAAATTGTCT
* * * ** *
79831209 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGCCGATGCCATGTCCCGGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAGACA
* * *** * * *
79831274 TGGTCTTACACTTGCTCTTGTCTCAATGCCGATGCCATGTTCAAAACATGGTCTTACACTGGCTC
66 TGGCCTTACACTAGCTCACATCTCAAGGCCGATGCCATGTCCAAAACATGATCTTACACTGGCTC
79831339 TCAAATTGTGGACG
131 TCAAATTGTGGACG
* ** *
79831353 ATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATATCAACACCGATTTCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAGACA
* * *
79831418 TGGCCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCCAAACATGATCTTACA
66 TGGCCTTACACTAGCTCACATCTCAAGGCCGATGCCATGTCCAAAACATGATCTTACA
79831476 TTATTTCTTG
Statistics
Matches: 102, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
144 102 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAGACA
TGGCCTTACACTAGCTCACATCTCAAGGCCGATGCCATGTCCAAAACATGATCTTACACTGGCTC
TCAAATTGTGGACG
Found at i:79831549 original size:192 final size:192
Alignment explanation
Indices: 79831213--79831586 Score: 570
Period size: 192 Copynumber: 1.9 Consensus size: 192
79831203 TTGTCTATGC
* * ** *
79831213 CATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGCCGATGCCATGTCCCGGACATGGT
1 CATGTCCCAGACATGGCCTTACACTAGCTCACATGTCAAGGCCGATGCCATGTCCCAAACATGAT
79831278 CTTACACTTGCTCTTGTCTCAATGCCGATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAA
66 CTTACACTTGCTCTTGTCTCAATGCCGATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAA
* *
79831343 ATTGTGGACGATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATATCAACACCGATTT
131 AATGTGGACGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATTT
* *
79831405 CATGTCCTAGACATGGCCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCCAAACATGAT
1 CATGTCCCAGACATGGCCTTACACTAGCTCACATGTCAAGGCCGATGCCATGTCCCAAACATGAT
** * * * * *
79831470 CTTACA-TTATTTCTTGTTTCAATGCCGCTGCCATGTTCCAAACATTGTCTTACAGTGGCTCTCA
66 CTTACACTT-GCTCTTGTCTCAATGCCGATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCA
* *
79831534 AAATGTGGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCA
130 AAATGTGGACGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
79831587 CCCAATTGTC
Statistics
Matches: 163, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
191 2 0.01
192 161 0.99
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (192 bp):
CATGTCCCAGACATGGCCTTACACTAGCTCACATGTCAAGGCCGATGCCATGTCCCAAACATGAT
CTTACACTTGCTCTTGTCTCAATGCCGATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAA
AATGTGGACGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATTT
Found at i:79849638 original size:37 final size:37
Alignment explanation
Indices: 79849566--79849656 Score: 98
Period size: 37 Copynumber: 2.5 Consensus size: 37
79849556 TGTGTGTTTT
* *
79849566 TGGTTTGATTAGCTCTTATGGGAATTTGGCATGTTA-C
1 TGGTTGGATTAGCTCTTAT-GGAATTCGGCATGTTATC
*
79849603 TGGTTGGATTAGCTCTTAT-GAACGTTCGGCGTGTTATC
1 TGGTTGGATTAGCTCTTATGGAA--TTCGGCATGTTATC
*
79849641 T-ATTGGATTAGCTCTT
1 TGGTTGGATTAGCTCTT
79849657 GTAAGCGTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
35 3 0.06
37 42 0.89
38 2 0.04
ACGTcount: A:0.18, C:0.13, G:0.26, T:0.43
Consensus pattern (37 bp):
TGGTTGGATTAGCTCTTATGGAATTCGGCATGTTATC
Found at i:79851298 original size:45 final size:45
Alignment explanation
Indices: 79851247--79851590 Score: 420
Period size: 45 Copynumber: 7.6 Consensus size: 45
79851237 TACTAGAAAT
* * ** *
79851247 GAGTAAGATCATGACTTAAAGACGTTATGAAATCACTATTTTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* * * ** * *
79851292 GAGTAAGACCATGAATAAAAGATGTTGGGGCATCATTATTCTATT
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* *
79851337 GAATAAGACCATGACTGAAAGATGTTATGGCATCACTATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* *
79851382 GAGTAAGACCATGACTGAAAGAAGTTATGGCATCACTACTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* * *
79851427 GAGTAATACCATGACTAAAAGACGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* *
79851472 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATT
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* ** * *
79851517 GAGTAAGACCATGACTGAAAGACATTATGGCATCAGGATCCTATT
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* *
79851562 GAGTAAGACCAT-AGCTAAAAGACGATATG
1 GAGTAAGACCATGA-CTGAAAGACGTTATG
79851591 ATATCATAAA
Statistics
Matches: 263, Mismatches: 35, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
44 1 0.00
45 262 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (45 bp):
GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
Found at i:79851614 original size:135 final size:135
Alignment explanation
Indices: 79851247--79851638 Score: 351
Period size: 135 Copynumber: 2.9 Consensus size: 135
79851237 TACTAGAAAT
* * * ** * * * *
79851247 GAGTAAGATCATGACTTAAAGACGTTATGAAATCACTATTTTATCGAGTAAGACCATGAATAAAA
1 GAGTAAGACCATGACTGAAAGAAGTTATGGCATCACGACTCTATCGAGTAAGACCATGACTAAAA
* * ** * ** * * ** * *
79851312 GATGTTGGGGCATCATTATTCTATTGAATAAGACCATGACTGAAAGATGTTATGGCATCACTATT
66 GACGATATGACATCAAAAGTCAAACGAATAAGACCATGACTGAAAGACGTTATGGCATCACGATT
79851377 CTATC
131 CTATC
* *
79851382 GAGTAAGACCATGACTGAAAGAAGTTATGGCATCACTACTCTATCGAGTAATACCATGACTAAAA
1 GAGTAAGACCATGACTGAAAGAAGTTATGGCATCACGACTCTATCGAGTAAGACCATGACTAAAA
* * ** * * * *
79851447 GACGTTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATT
66 GACGATATGACATCAAAAGTCAAACGAATAAGACCATGACTGAAAGACGTTATGGCATCACGATT
*
79851512 CTATT
131 CTATC
* *
79851517 GAGTAAGACCATGACTGAAAGACA-TTATGGCATCAGGA-TCCTATTGAGTAAGACCAT-AGCTA
1 GAGTAAGACCATGACTGAAAGA-AGTTATGGCATCACGACT-CTATCGAGTAAGACCATGA-CTA
* * ** **
79851579 AAAGACGATATGATATCATAAAGT-AAAGGAATAAGACCATGGTTGAAAGACACTATGGCA
63 AAAGACGATATGACATCA-AAAGTCAAACGAATAAGACCATGACTGAAAGACGTTATGGCA
79851639 CATTCTGATC
Statistics
Matches: 216, Mismatches: 37, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
134 2 0.01
135 211 0.98
136 3 0.01
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (135 bp):
GAGTAAGACCATGACTGAAAGAAGTTATGGCATCACGACTCTATCGAGTAAGACCATGACTAAAA
GACGATATGACATCAAAAGTCAAACGAATAAGACCATGACTGAAAGACGTTATGGCATCACGATT
CTATC
Found at i:79851951 original size:55 final size:55
Alignment explanation
Indices: 79851883--79851987 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 55
79851873 CAACAGGGAT
* * *
79851883 GAAAAAGGAAAGGTATCTGTTCAAATGAACTATGTCATGAAGTTATAAAAAAAAAA
1 GAAAAAGGAAAGGTATCTATTCAAACGAACT-TGTCATGAAATTATAAAAAAAAAA
* * *
79851939 GAAAAA-GAAAGGTATGTATTCGAACGAACTTGTCATGAAATTATGAAAA
1 GAAAAAGGAAAGGTATCTATTCAAACGAACTTGTCATGAAATTATAAAAA
79851988 TGATTGAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 17 0.40
55 20 0.47
56 6 0.14
ACGTcount: A:0.50, C:0.08, G:0.19, T:0.24
Consensus pattern (55 bp):
GAAAAAGGAAAGGTATCTATTCAAACGAACTTGTCATGAAATTATAAAAAAAAAA
Found at i:79853947 original size:34 final size:33
Alignment explanation
Indices: 79853909--79853981 Score: 76
Period size: 34 Copynumber: 2.2 Consensus size: 33
79853899 ACATTAGCAA
* *
79853909 TATCAATGTGAGCCTTAGCCC-ATTACGGTAACAG
1 TATCAATATGAGCCTTAGCCCAATT-CAGT-ACAG
* * *
79853943 TATCAGTATGGGCCTTATCCCAATTCAGTACAG
1 TATCAATATGAGCCTTAGCCCAATTCAGTACAG
79853976 TATCAA
1 TATCAA
79853982 AGATGCAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
33 9 0.28
34 20 0.62
35 3 0.09
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (33 bp):
TATCAATATGAGCCTTAGCCCAATTCAGTACAG
Found at i:79854394 original size:43 final size:43
Alignment explanation
Indices: 79854331--79854416 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
79854321 CATCAATAGG
*
79854331 CCCACAGTCGTTGTAAGGGACCCATGCGACCTTAACAGTCAAA
1 CCCACAATCGTTGTAAGGGACCCATGCGACCTTAACAGTCAAA
*
79854374 CCCACAATCGTTGTAGGGGACCCATGCGACCTTAACAGTCAAA
1 CCCACAATCGTTGTAAGGGACCCATGCGACCTTAACAGTCAAA
79854417 TAGTGGAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (43 bp):
CCCACAATCGTTGTAAGGGACCCATGCGACCTTAACAGTCAAA
Found at i:79864508 original size:46 final size:46
Alignment explanation
Indices: 79864432--79864530 Score: 162
Period size: 46 Copynumber: 2.2 Consensus size: 46
79864422 CTGAATGACG
* * *
79864432 ATGATTTTGTACTAGCAGATTTGAGGACTAAACCCTTGTTTCTTTA
1 ATGAATTTGTACTAGCAGAGTTGAGAACTAAACCCTTGTTTCTTTA
*
79864478 ATGAATTTGTACTGGCAGAGTTGAGAACTAAACCCTTGTTTCTTTA
1 ATGAATTTGTACTAGCAGAGTTGAGAACTAAACCCTTGTTTCTTTA
79864524 ATGAATT
1 ATGAATT
79864531 CAAGAGTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.39
Consensus pattern (46 bp):
ATGAATTTGTACTAGCAGAGTTGAGAACTAAACCCTTGTTTCTTTA
Found at i:79871022 original size:44 final size:42
Alignment explanation
Indices: 79870946--79871045 Score: 103
Period size: 44 Copynumber: 2.3 Consensus size: 42
79870936 CGATATGTGT
* * * *
79870946 TTTCGTGTAAGACCACATTTGCGACGTTGGCATCGACT-TATGA
1 TTTCATGTAAGACCACATTTGAGACATCGGCATC--CTATATGA
** *
79870989 TTTACATGTAAGACCATGTTTGAGACATCGGCATCCTATTTGA
1 TTT-CATGTAAGACCACATTTGAGACATCGGCATCCTATATGA
79871032 TTTCATGTAAGACC
1 TTTCATGTAAGACC
79871046 TTGTCTGGGA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 13 0.27
43 10 0.21
44 25 0.52
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (42 bp):
TTTCATGTAAGACCACATTTGAGACATCGGCATCCTATATGA
Found at i:79871072 original size:43 final size:42
Alignment explanation
Indices: 79870973--79871107 Score: 132
Period size: 43 Copynumber: 3.1 Consensus size: 42
79870963 TTTGCGACGT
* * *
79870973 TGGCATCGACT-TATGATTTACATGTAAGACCATGTTTGAGACA
1 TGGCATCGA-TATTTGATTT-CATGTAAGACCATGTCTGGGACA
* * *
79871016 TCGGCATC-CTATTTGATTTCATGTAAGACCTTGTCTGGGATA
1 T-GGCATCGATATTTGATTTCATGTAAGACCATGTCTGGGACA
*
79871058 GTGGCATCGATATTTGATTAT-ATGTAATACCATGTCTGGGACA
1 -TGGCATCGATATTTGATT-TCATGTAAGACCATGTCTGGGACA
79871101 TTGGCAT
1 -TGGCAT
79871108 TGTACGGACT
Statistics
Matches: 76, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
42 26 0.34
43 43 0.57
44 7 0.09
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (42 bp):
TGGCATCGATATTTGATTTCATGTAAGACCATGTCTGGGACA
Found at i:79874279 original size:47 final size:47
Alignment explanation
Indices: 79874214--79874810 Score: 789
Period size: 47 Copynumber: 12.4 Consensus size: 47
79874204 CATCCAAGAG
*
79874214 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
79874261 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
79874308 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
79874357 AGTATATGTATATATGTAATAAGTCCTAATAGCCGATGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * *
79874408 AGTGTATATGTGTGATAAGGCCTAATACCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
79874455 AGTGTATGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTA--TATA--TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
79874506 AGTATATGTATATATGTAATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
79874557 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * *
79874604 AGTATATATATGTAATAAGGCCTAATGGTCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
79874651 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
79874698 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * * *
79874745 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
79874792 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
79874811 TCCCGAAAGG
Statistics
Matches: 494, Mismatches: 42, Indels: 28
0.88 0.07 0.05
Matches are distributed among these distances:
47 323 0.65
49 45 0.09
51 114 0.23
53 8 0.02
55 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:79874554 original size:149 final size:147
Alignment explanation
Indices: 79874216--79874758 Score: 837
Period size: 149 Copynumber: 3.7 Consensus size: 147
79874206 TCCAAGAGAG
* * *
79874216 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* * * *
79874281 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTG
66 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATGGCCGATGTG
79874346 ATGAATGTGAAAGTATA
131 ATGAATGTGAAAGTATA
* *
79874363 TGTATATATGTAATAAGTCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* *
79874428 CCTAATACCCGACGTGATGAATGTGAAAGTGTATGTATATGTGTGATAAGGCCTAATAGCCGATG
66 CCTAATAGCCGACGTGATGAATGTGAAAGTGTA--TATATGTGTGATAAGGCCTAATGGCCGATG
79874493 TGATGAATGTGAAAGTATA
129 TGATGAATGTGAAAGTATA
* *
79874512 TGTATATATGTAATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* * *
79874577 CCTAATAGCCGACGTGATGAATGTGAAA--GTATATATATGTAATAAGGCCTAATGGTCGATGTG
66 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATGGCCGATGTG
79874640 ATGAATGTGAAAG----
131 ATGAATGTGAAAGTATA
* * *
79874653 TGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATATGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* *
79874718 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
66 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTG
79874759 ACAGGGCCGA
Statistics
Matches: 366, Mismatches: 26, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
141 86 0.23
143 10 0.03
145 41 0.11
147 93 0.25
149 136 0.37
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (147 bp):
TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTATA
Found at i:79874985 original size:37 final size:37
Alignment explanation
Indices: 79874929--79875007 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
79874919 CCGAGCTCTA
* * *
79874929 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
79874966 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
79875003 AAGAC
1 AAGAC
79875008 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:79878024 original size:16 final size:17
Alignment explanation
Indices: 79878003--79878035 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
79877993 CTATTTTGCT
79878003 ATATGTTCTG-TATATG
1 ATATGTTCTGATATATG
*
79878019 ATATGTTTTGATATATG
1 ATATGTTCTGATATATG
79878036 TAGGATTATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.27, C:0.03, G:0.18, T:0.52
Consensus pattern (17 bp):
ATATGTTCTGATATATG
Found at i:79878784 original size:12 final size:12
Alignment explanation
Indices: 79878767--79878791 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79878757 GAAGAATAAA
79878767 CATTTTCTTCTT
1 CATTTTCTTCTT
79878779 CATTTTCTTCTT
1 CATTTTCTTCTT
79878791 C
1 C
79878792 TTCATATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (12 bp):
CATTTTCTTCTT
Found at i:79878791 original size:15 final size:16
Alignment explanation
Indices: 79878771--79878801 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
79878761 AATAAACATT
79878771 TTCTTCTTCAT-TTTC
1 TTCTTCTTCATATTTC
79878786 TTCTTCTTCATATTTC
1 TTCTTCTTCATATTTC
79878802 CAAAAAACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.10, C:0.26, G:0.00, T:0.65
Consensus pattern (16 bp):
TTCTTCTTCATATTTC
Found at i:79880784 original size:40 final size:40
Alignment explanation
Indices: 79880710--79880886 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
79880700 ACCGAAGTAT
* * *
79880710 CTTCGGGAT-TTAG-CCAGATATAACAACTCACACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
79880749 CTTCGGGTCTTAGCCCGGATATAGCAACTTGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * * *
79880789 CTTCGGGTCTTAGCCCAGTTATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
79880829 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
79880869 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
79880887 TTATCATCCG
Statistics
Matches: 113, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 97 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:79880843 original size:80 final size:80
Alignment explanation
Indices: 79880743--79880890 Score: 233
Period size: 80 Copynumber: 1.9 Consensus size: 80
79880733 CAACTCACAC
* * * *
79880743 AAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTTGCACAAATGCCTTCGGGTCTTAGCCCAGT
1 AAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCAGT
79880808 TATAATCACTAGCAT
66 TATAATCACTAGCAT
* * *
79880823 AAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGT
1 AAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCAGT
79880888 TAT
66 TAT
79880891 CATCCGAATA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 61 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
AAATGCCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCAGT
TATAATCACTAGCAT
Found at i:79888578 original size:40 final size:40
Alignment explanation
Indices: 79888511--79888671 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
79888501 ACCCAAGTAT
79888511 CTTCGGG-CTTTAG-CCGGATATAACAACTCACACAAATGC
1 CTTCGGGTC-TTAGCCCGGATATAACAACTCACACAAATGC
* *
79888550 CTTCGGGTCTTAGCCCGGATATACCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCACACAAATGC
*
79888590 CTTCGGGTCTTAGCCCGGATATAATC-ACT-AGCATAAAT-C
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCA-CACAAATGC
* * * * *
79888629 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCACACAAATGC
79888669 CTT
1 CTT
79888672 TGAATCTTAG
Statistics
Matches: 104, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
38 1 0.01
39 41 0.39
40 61 0.59
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCACACAAATGC
Done.