Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 243 of 343
Found at i:80432277 original size:42 final size:40
Alignment explanation
Indices: 80432188--80432290 Score: 109
Period size: 42 Copynumber: 2.5 Consensus size: 40
80432178 AGCTTGGTCT
* *
80432188 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTT
1 CGAAGGGCTTTTGAGCCAGTGC-AATAACCGAACTTAATTC
* *
80432229 CAAAGGGCTTTTTAGAGCCAGTG-ACATAACCGGACTTAATTC
1 CGAAGGGC-TTTT-GAGCCAGTGCA-ATAACCGAACTTAATTC
* *
80432271 CGAAGGGCCTTCGAGCCAGT
1 CGAAGGGCTTTTGAGCCAGT
80432291 AGTCTAATCC
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
40 8 0.15
41 10 0.19
42 25 0.48
43 9 0.17
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
CGAAGGGCTTTTGAGCCAGTGCAATAACCGAACTTAATTC
Found at i:80440555 original size:42 final size:41
Alignment explanation
Indices: 80440468--80440561 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 41
80440458 AGCTTGGTCT
* *
80440468 CGAAGGGC-TTTTGAGCCAGTGCTAATAACCGAACTTAGTTT
1 CGAAGGGCTTTTTGAGCCAGTGC-AATAACCGAACTTAATTC
*
80440509 CGAAGGGCTTTTTAGAGCCAGTG-ACATAACCGGACTTAATTC
1 CGAAGGGCTTTTT-GAGCCAGTGCA-ATAACCGAACTTAATTC
80440551 CGAAGGGCTTT
1 CGAAGGGCTTT
80440562 CGAGCTAGTA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
41 9 0.19
42 29 0.62
43 9 0.19
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (41 bp):
CGAAGGGCTTTTTGAGCCAGTGCAATAACCGAACTTAATTC
Found at i:80440602 original size:41 final size:40
Alignment explanation
Indices: 80440447--80440616 Score: 143
Period size: 41 Copynumber: 4.2 Consensus size: 40
80440437 GCTAATCTGG
*
80440447 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
80440488 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* * * *
80440531 GACATAA-CCG-GACTTAAT-TCCGAAGGGCTTTCGAGCTAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
80440571 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
80440612 G-CTAA
1 GTCTAA
80440617 GAGTCGGACT
Statistics
Matches: 104, Mismatches: 13, Indels: 26
0.73 0.09 0.18
Matches are distributed among these distances:
39 7 0.07
40 13 0.12
41 49 0.47
42 22 0.21
43 9 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:80447903 original size:42 final size:42
Alignment explanation
Indices: 80447781--80447952 Score: 172
Period size: 42 Copynumber: 4.1 Consensus size: 42
80447771 ATAAAATTTT
*
80447781 CTAGGC-ATAAAGCC-TAGTATAATACACCGGCACAGAA-CTTG
1 CTAGGCAATAAAGCCTTA-TATAATACACCGGCACA-AAGCCTG
* * * * * *
80447822 CTAGGCAAT-AGGCCTGACATAAGACACTGGCATAAAGCCTG
1 CTAGGCAATAAAGCCTTATATAATACACCGGCACAAAGCCTG
*
80447863 CTAGGCAATAAAGCCTTATATAATACACCGGCATAAAGCCTG
1 CTAGGCAATAAAGCCTTATATAATACACCGGCACAAAGCCTG
** * * * *
80447905 CTAGGCAATAAAGCCCAATTTAATACACTGGCACAAGGCTTG
1 CTAGGCAATAAAGCCTTATATAATACACCGGCACAAAGCCTG
80447947 CTAGGC
1 CTAGGC
80447953 TCAAAGTCTG
Statistics
Matches: 108, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
40 2 0.02
41 35 0.32
42 71 0.66
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.20
Consensus pattern (42 bp):
CTAGGCAATAAAGCCTTATATAATACACCGGCACAAAGCCTG
Found at i:80452139 original size:22 final size:22
Alignment explanation
Indices: 80452108--80452152 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
80452098 AATTCCTGGA
80452108 ACTCAAGCAGGGAAATAAGACT
1 ACTCAAGCAGGGAAATAAGACT
*
80452130 ACTCAGGCAGGGAAATAAGACT
1 ACTCAAGCAGGGAAATAAGACT
80452152 A
1 A
80452153 TGTCAGAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.13
Consensus pattern (22 bp):
ACTCAAGCAGGGAAATAAGACT
Found at i:80458547 original size:46 final size:47
Alignment explanation
Indices: 80458417--80458677 Score: 181
Period size: 46 Copynumber: 5.6 Consensus size: 47
80458407 ACATCGACGC
* * ** * *
80458417 CATGTCCCAGACATGGTCTTACACAAGTTTAGCATATCTGT-GTTGATG
1 CATGTCTCAGACATGGTCTTACACTAGCATA-CATCTC-GTAGTCGATG
*
80458465 CCATGTC-CTAGACATGGTCTTACACT-G-ACACATCTCGTAGTCGATG
1 -CATGTCTC-AGACATGGTCTTACACTAGCATACATCTCGTAGTCGATG
*
80458511 CATGTCTCAGACAT-GTCTTACACTAGCATACATCTCG-AGGTTGATG
1 CATGTCTCAGACATGGTCTTACACTAGCATACATCTCGTA-GTCGATG
* *
80458557 CATGT-TCGAGACAT-GTCTTACACTAGAACT-CATCTCAATA-TCGATG
1 CATGTCTC-AGACATGGTCTTACACTAGCA-TACATCTC-GTAGTCGATG
* * * *
80458603 CCATGTACT-AGACATGGTCTTACACTGGC-TCTCATAAT-GTGGTCGATG
1 -CATGT-CTCAGACATGGTCTTACACTAGCAT-ACAT-CTCGTAGTCGATG
*
80458651 CATGTCCCAGACAT-GTCTTACACTAGC
1 CATGTCTCAGACATGGTCTTACACTAGC
80458678 TCACACAAGT
Statistics
Matches: 176, Mismatches: 17, Indels: 41
0.75 0.07 0.18
Matches are distributed among these distances:
44 10 0.06
45 18 0.10
46 76 0.43
47 25 0.14
48 23 0.13
49 24 0.14
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (47 bp):
CATGTCTCAGACATGGTCTTACACTAGCATACATCTCGTAGTCGATG
Found at i:80462107 original size:47 final size:47
Alignment explanation
Indices: 80462056--80462512 Score: 783
Period size: 47 Copynumber: 9.7 Consensus size: 47
80462046 TTAGGATTCT
* * *
80462056 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
80462103 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
80462150 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
80462197 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
80462244 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
80462291 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
80462338 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
80462385 ATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
80462432 ATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
80462478 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
80462513 TCCCGAAGGG
Statistics
Matches: 393, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 40 0.10
47 353 0.90
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:80462131 original size:25 final size:25
Alignment explanation
Indices: 80462103--80462181 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
80462093 CTAATGGCCG
80462103 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
80462128 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
80462150 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
80462175 ATGTGAT
1 ATGTGAT
80462182 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:80462687 original size:37 final size:37
Alignment explanation
Indices: 80462631--80462709 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
80462621 CCGAGCTCTA
* * *
80462631 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
80462668 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80462705 AAGAC
1 AAGAC
80462710 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80464895 original size:40 final size:40
Alignment explanation
Indices: 80464542--80464883 Score: 302
Period size: 40 Copynumber: 8.6 Consensus size: 40
80464532 TCGAATGATG
* * *
80464542 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * *
80464582 TCCGGACTAAGATCCGAAG-GCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATA
* * * * *
80464621 TTCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATA
* * * * *
80464661 TCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATA
* * *
80464701 ACCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
*
80464741 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
80464781 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
* * *** * *
80464821 TCTGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
* *
80464861 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTTCCGAAGAGCA
80464884 ATCATGCTGG
Statistics
Matches: 262, Mismatches: 35, Indels: 10
0.85 0.11 0.03
Matches are distributed among these distances:
39 35 0.13
40 208 0.79
41 19 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:80467820 original size:47 final size:47
Alignment explanation
Indices: 80467769--80467991 Score: 331
Period size: 47 Copynumber: 4.7 Consensus size: 47
80467759 TTAGGATTCT
* * *
80467769 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
80467816 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
80467863 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
80467910 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
80467957 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
80467992 TCCCGAAGGG
Statistics
Matches: 162, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.01
47 161 0.99
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:80467844 original size:25 final size:25
Alignment explanation
Indices: 80467816--80467894 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
80467806 CTAATGGCCG
80467816 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
80467841 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
80467863 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
80467888 ATGTGAT
1 ATGTGAT
80467895 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:80468179 original size:37 final size:37
Alignment explanation
Indices: 80468110--80468188 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
80468100 CTGAGGTCTA
* * *
80468110 AAGACCCGATGACTACGTATGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
* *
80468147 AAGACCCGATAACTTCGTTTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
80468184 AAGAC
1 AAGAC
80468189 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
Found at i:80472660 original size:20 final size:20
Alignment explanation
Indices: 80472635--80472684 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
80472625 GGCTGAGGAC
80472635 ACGGGCGTGTCCTAAGACAT
1 ACGGGCGTGTCCTAAGACAT
80472655 ACGGGCGTGTCCTAAGACAT
1 ACGGGCGTGTCCTAAGACAT
80472675 ACGGGCGTGT
1 ACGGGCGTGT
80472685 GTGACCACAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.22, C:0.24, G:0.34, T:0.20
Consensus pattern (20 bp):
ACGGGCGTGTCCTAAGACAT
Found at i:80474812 original size:46 final size:46
Alignment explanation
Indices: 80474745--80474918 Score: 267
Period size: 46 Copynumber: 3.8 Consensus size: 46
80474735 TGTAACCCGC
* *
80474745 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
80474791 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * * * *
80474837 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
80474883 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
80474919 ATGCCCAAAC
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 118 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:80479015 original size:45 final size:43
Alignment explanation
Indices: 80478930--80479062 Score: 128
Period size: 45 Copynumber: 3.0 Consensus size: 43
80478920 ATAAGATCCG
* * * * *
80478930 ATATGTGTTTTTGTGTAAGACCACGTCTAGGACGTTGGCATCGAT
1 ATATGTG-ATTTGTGTAAGACCATGTTTGGGAC-ATGGCATCGAT
*
80478975 ATATGTGGTTATGTGTAAGACCATGTTTGGGACATCGGCATCG-T
1 ATATGTGATT-TGTGTAAGACCATGTTTGGGACAT-GGCATCGAT
* *
80479019 AT-T-TGATTCGTGTAAGACCCTGTTTGGGACAGTGGCATCGAT
1 ATATGTGATTTGTGTAAGACCATGTTTGGGACA-TGGCATCGAT
80479061 AT
1 AT
80479063 GAGATATCAT
Statistics
Matches: 76, Mismatches: 8, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
41 28 0.37
42 8 0.11
43 1 0.01
44 6 0.08
45 33 0.43
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.35
Consensus pattern (43 bp):
ATATGTGATTTGTGTAAGACCATGTTTGGGACATGGCATCGAT
Found at i:80482214 original size:30 final size:30
Alignment explanation
Indices: 80482180--80482240 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80482170 TCCTTAACTC
80482180 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
80482210 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
80482240 A
1 A
80482241 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:80486647 original size:30 final size:30
Alignment explanation
Indices: 80486613--80486673 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80486603 TCCTTAACTC
80486613 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
80486643 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
80486673 A
1 A
80486674 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:80489263 original size:8 final size:8
Alignment explanation
Indices: 80489250--80489279 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
80489240 ATGGCTTTCT
80489250 CTAAACCC
1 CTAAACCC
80489258 CTAAACCC
1 CTAAACCC
80489266 CTAAA-CC
1 CTAAACCC
80489273 CTAAACC
1 CTAAACC
80489280 TTAAATTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.40, C:0.47, G:0.00, T:0.13
Consensus pattern (8 bp):
CTAAACCC
Found at i:80489276 original size:15 final size:16
Alignment explanation
Indices: 80489250--80489279 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80489240 ATGGCTTTCT
80489250 CTAAACCCCTAAACCC
1 CTAAACCCCTAAACCC
80489266 CTAAA-CCCTAAACC
1 CTAAACCCCTAAACC
80489280 TTAAATTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.47, G:0.00, T:0.13
Consensus pattern (16 bp):
CTAAACCCCTAAACCC
Found at i:80489559 original size:21 final size:21
Alignment explanation
Indices: 80489535--80489574 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
80489525 TAAGTTTATA
*
80489535 GTTTATGGTTT-GTTATTTTGG
1 GTTTAGGGTTTAGTT-TTTTGG
80489556 GTTTAGGGTTTAGTTTTTT
1 GTTTAGGGTTTAGTTTTTT
80489575 AAATTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.10, C:0.00, G:0.28, T:0.62
Consensus pattern (21 bp):
GTTTAGGGTTTAGTTTTTTGG
Found at i:80489836 original size:7 final size:7
Alignment explanation
Indices: 80489818--80489878 Score: 63
Period size: 7 Copynumber: 8.7 Consensus size: 7
80489808 ATTTAGTTTA
*
80489818 TAGGGGT
1 TAGGGTT
*
80489825 TAAGGTT
1 TAGGGTT
*
80489832 TAAGGTT
1 TAGGGTT
80489839 TAGGGTAT
1 TAGGGT-T
80489847 T-GGGTT
1 TAGGGTT
80489853 TAGGGTT
1 TAGGGTT
80489860 TAGGGTAT
1 TAGGGT-T
80489868 TA-GGTT
1 TAGGGTT
80489874 TAGGG
1 TAGGG
80489879 CTTAATTATA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
6 5 0.11
7 37 0.79
8 5 0.11
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (7 bp):
TAGGGTT
Found at i:80489876 original size:21 final size:21
Alignment explanation
Indices: 80489827--80489878 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
80489817 ATAGGGGTTA
*
80489827 AGGTTTAAGGTTTAGGGTATT
1 AGGTTTAGGGTTTAGGGTATT
*
80489848 GGGTTTAGGGTTTAGGGTATT
1 AGGTTTAGGGTTTAGGGTATT
80489869 AGGTTTAGGG
1 AGGTTTAGGG
80489879 CTTAATTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.19, C:0.00, G:0.40, T:0.40
Consensus pattern (21 bp):
AGGTTTAGGGTTTAGGGTATT
Found at i:80490294 original size:123 final size:123
Alignment explanation
Indices: 80490065--80490373 Score: 448
Period size: 123 Copynumber: 2.5 Consensus size: 123
80490055 GACTTAGCAA
* * * *
80490065 CGCTTATTTA-AAAA-GACCGC-AAAAAAATGATAAATTGAATGAAAACGACATCGTTTTAGTTG
1 CGCTTA-TTAGAAAACG-CCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTAGTTG
* * *
80490127 G-TGGGTAGTGTACTTAGTGGCGCTAGGCAATAAACTCCGCAATAGATCAGAATTAGCGG
64 GCGGGGTAGTGGACTTAGTGGCGCCAGGCAATAAACTCCGCAATAGATCAGAATTAGCGG
* *
80490186 TGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCGTCGTTTTAGTTGGC
1 CGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTAGTTGGC
* *
80490251 GGGGTAGTGGATTTAGTGGCGCCAGGTAATAAACGT-CGCAATAGATCAGAATTAGCGG
66 GGGGTAGTGGACTTAGTGGCGCCAGGCAATAAAC-TCCGCAATAGATCAGAATTAGCGG
*
80490309 CGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTATTTGGC
1 CGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTAGTTGGC
80490374 TCGGTTTAGG
Statistics
Matches: 169, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
120 3 0.02
121 13 0.08
122 39 0.23
123 113 0.67
124 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (123 bp):
CGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTAGTTGGC
GGGGTAGTGGACTTAGTGGCGCCAGGCAATAAACTCCGCAATAGATCAGAATTAGCGG
Found at i:80490414 original size:123 final size:123
Alignment explanation
Indices: 80490065--80490448 Score: 384
Period size: 123 Copynumber: 3.1 Consensus size: 123
80490055 GACTTAGCAA
* * * *
80490065 CGCTTATTTA-AAAA-GACCGC-AAAAAAATGATAAATTGAATGAAAACGACATCGTTTTAGTTG
1 CGCTTA-TTAGAAAACG-CCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTAGTTG
* * * ** * * * *
80490127 GTG-GGTAGTGTACTTAGTGGCGCTAGGCAATAAACTCCGCAATAGATCAGAATTAGCGG
64 GCGCGGTAGTGGAATTAGCAGCGCCAGGTAAGAAACGCCGCAATAGATCAGAATTAGCGG
* *
80490186 TGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCGTCGTTTTAGTTGGC
1 CGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTAGTTGGC
* * ** * *
80490251 GGGGTAGTGGATTTAGTGGCGCCAGGTAATAAACGTCGCAATAGATCAGAATTAGCGG
66 GCGGTAGTGGAATTAGCAGCGCCAGGTAAGAAACGCCGCAATAGATCAGAATTAGCGG
*
80490309 CGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTATTTGGC
1 CGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTAGTTGGC
* * * * ** * * * * **
80490374 TCGGT-TTAGGAATTAGCAGCGCTATGTTGGAAATGCCGCAAAAAATCAGCATTATTGG
66 GCGGTAGT-GGAATTAGCAGCGCCAGGTAAGAAACGCCGCAATAGATCAGAATTAGCGG
80490432 CGCTTATTCA-AAAACGC
1 CGCTTATT-AGAAAACGC
80490449 TGCAAATGTC
Statistics
Matches: 223, Mismatches: 34, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
120 3 0.01
121 13 0.06
122 41 0.18
123 165 0.74
124 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (123 bp):
CGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTAGTTGGC
GCGGTAGTGGAATTAGCAGCGCCAGGTAAGAAACGCCGCAATAGATCAGAATTAGCGG
Found at i:80491723 original size:5 final size:5
Alignment explanation
Indices: 80491713--80491749 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
80491703 ATTTTGTCCT
80491713 TATAC TATAC TATAC TATAC TATAC TATAC TATAC TA
1 TATAC TATAC TATAC TATAC TATAC TATAC TATAC TA
80491750 GACTGCATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAC
Found at i:80492068 original size:16 final size:17
Alignment explanation
Indices: 80492047--80492095 Score: 59
Period size: 15 Copynumber: 3.1 Consensus size: 17
80492037 GCTAGCCCTC
80492047 TGCTGCT-TCTCCAGTT
1 TGCTGCTATCTCCAGTT
80492063 TGCTGCTATCT--AGTT
1 TGCTGCTATCTCCAGTT
* *
80492078 TTCTGTTATCTCCAGTT
1 TGCTGCTATCTCCAGTT
80492095 T
1 T
80492096 TGGTATGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 13 0.46
16 7 0.25
17 8 0.29
ACGTcount: A:0.10, C:0.24, G:0.16, T:0.49
Consensus pattern (17 bp):
TGCTGCTATCTCCAGTT
Found at i:80493330 original size:105 final size:105
Alignment explanation
Indices: 80493138--80493500 Score: 611
Period size: 105 Copynumber: 3.4 Consensus size: 105
80493128 TTTTTAAATA
*
80493138 TTTTATTTTATTTTTAAATTACCTAATTGAATTAAATTGTATTTAAAGTTTTATTTTGAATAAGT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT--A-AA--
80493203 TATTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
61 TATTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
*
80493248 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTTTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
80493313 TATTTTATTTTATTTTAATCACGAAAAATACTTTGTCTGC
66 TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
80493353 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
80493418 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTTTAC
66 TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
*
80493458 TTTTATTTTATTGTTAAATTACCTAATTAAATT-AATTGTATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTT
80493501 TTAAATATTG
Statistics
Matches: 243, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
104 10 0.04
105 175 0.72
107 2 0.01
108 1 0.00
110 55 0.23
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.56
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
Found at i:80493797 original size:18 final size:18
Alignment explanation
Indices: 80493771--80493886 Score: 84
Period size: 18 Copynumber: 6.8 Consensus size: 18
80493761 AAATATATAT
*
80493771 CATATCTTACATAATTTA
1 CATAACTTACATAATTTA
*
80493789 CATAACTTACA-AA-ATA
1 CATAACTTACATAATTTA
* *
80493805 CATAA---AAAT-ATAT-
1 CATAACTTACATAATTTA
*
80493818 CATATCTTACATAATTTA
1 CATAACTTACATAATTTA
** * *
80493836 CATAAGATAAACAATTTA
1 CATAACTTACATAATTTA
* *
80493854 CATAATTTACATAACTTA
1 CATAACTTACATAATTTA
80493872 CATAACTTACATAAT
1 CATAACTTACATAAT
80493887 ACATAAATAT
Statistics
Matches: 73, Mismatches: 18, Indels: 14
0.70 0.17 0.13
Matches are distributed among these distances:
13 7 0.10
14 2 0.03
16 10 0.14
17 5 0.07
18 49 0.67
ACGTcount: A:0.48, C:0.16, G:0.01, T:0.35
Consensus pattern (18 bp):
CATAACTTACATAATTTA
Found at i:80493840 original size:9 final size:9
Alignment explanation
Indices: 80493824--80493886 Score: 72
Period size: 9 Copynumber: 7.0 Consensus size: 9
80493814 ATATCATATC
80493824 TTACATAAT
1 TTACATAAT
*
80493833 TTACATAAG
1 TTACATAAT
* * *
80493842 ATAAACAAT
1 TTACATAAT
80493851 TTACATAAT
1 TTACATAAT
*
80493860 TTACATAAC
1 TTACATAAT
*
80493869 TTACATAAC
1 TTACATAAT
80493878 TTACATAAT
1 TTACATAAT
80493887 ACATAAATAT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.37
Consensus pattern (9 bp):
TTACATAAT
Found at i:80498983 original size:13 final size:14
Alignment explanation
Indices: 80498965--80498993 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80498955 TTATAAATAT
80498965 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
80498978 TTATAATGGTTTAA
1 TTATAATGGTTTAA
80498992 TT
1 TT
80498994 CTTTGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:80499841 original size:43 final size:43
Alignment explanation
Indices: 80499788--80499909 Score: 122
Period size: 43 Copynumber: 2.8 Consensus size: 43
80499778 TTAGCGGTGT
* **
80499788 TTTTACCACAAATGTCGCTAAAAGCCATGACTTTTAGCAGTGC
1 TTTTCCCACAAATGTCGCTAAAAGCCATGACTTTTAGCAGCAC
* * * * *
80499831 -TTTCGCCACAAACGCCACTACAAGCCATGACTTTTAGCGGCAC
1 TTTTC-CCACAAATGTCGCTAAAAGCCATGACTTTTAGCAGCAC
*
80499874 TTTTCTCACAAAT-TCTGCTAAAAGCCATGATCTTTT
1 TTTTCCCACAAATGTC-GCTAAAAGCCATGA-CTTTT
80499910 GTGGCATTTT
Statistics
Matches: 62, Mismatches: 13, Indels: 7
0.76 0.16 0.09
Matches are distributed among these distances:
42 4 0.06
43 49 0.79
44 9 0.15
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (43 bp):
TTTTCCCACAAATGTCGCTAAAAGCCATGACTTTTAGCAGCAC
Found at i:80500391 original size:28 final size:28
Alignment explanation
Indices: 80500351--80500408 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
80500341 GTTTATGAAC
80500351 CTCCATATTCAGCTGAATTTTGGGTTTA
1 CTCCATATTCAGCTGAATTTTGGGTTTA
80500379 CTCCATATTCAGCTGAATTTTGGGTTTA
1 CTCCATATTCAGCTGAATTTTGGGTTTA
80500407 CT
1 CT
80500409 TGGCCCTCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.43
Consensus pattern (28 bp):
CTCCATATTCAGCTGAATTTTGGGTTTA
Found at i:80504343 original size:46 final size:46
Alignment explanation
Indices: 80504293--80504468 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
80504283 TGGTTGAGCA
80504293 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80504339 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80504384 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80504432 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80504469 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80504449 original size:93 final size:93
Alignment explanation
Indices: 80504290--80504461 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80504280 GGATGGTTGA
* *
80504290 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80504355 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80504383 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80504448 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
80504462 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80511857 original size:46 final size:46
Alignment explanation
Indices: 80511807--80511982 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
80511797 TGGTTGAGCA
80511807 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80511853 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80511898 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80511946 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80511983 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80511963 original size:93 final size:93
Alignment explanation
Indices: 80511804--80511975 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80511794 GGATGGTTGA
* *
80511804 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80511869 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80511897 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80511962 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
80511976 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80516678 original size:25 final size:25
Alignment explanation
Indices: 80516641--80516693 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
80516631 TGGCATCTTA
* **
80516641 TTATGTATAGTAATTTTGAGTATCC
1 TTATATATAGTAATTCCGAGTATCC
*
80516666 TTATATATGGTAATTCCGAGTATCC
1 TTATATATAGTAATTCCGAGTATCC
80516691 TTA
1 TTA
80516694 GTATTCCAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.45
Consensus pattern (25 bp):
TTATATATAGTAATTCCGAGTATCC
Found at i:80519351 original size:40 final size:40
Alignment explanation
Indices: 80519304--80519427 Score: 212
Period size: 40 Copynumber: 3.1 Consensus size: 40
80519294 ATTCGTTTGC
80519304 GGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCG
1 GGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCG
* * *
80519344 GGTTATTATAACCGGGTTACGTCCTGAAGGCATTCGTGAG
1 GGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCG
*
80519384 GGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCT
1 GGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCG
80519424 GGTT
1 GGTT
80519428 GTTACATCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (40 bp):
GGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCG
Found at i:80527852 original size:40 final size:40
Alignment explanation
Indices: 80527797--80527971 Score: 269
Period size: 40 Copynumber: 4.4 Consensus size: 40
80527787 TATGTGCATA
80527797 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* **
80527837 GCATTCGTGCGGGTTATTATAACTGGGTTAAGTTGCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
** * *
80527877 GCATTCGTGCGGGTTATTACGACTGGGTTACGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
80527917 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
80527957 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
80527972 GTTACATCCG
Statistics
Matches: 121, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:80527995 original size:80 final size:80
Alignment explanation
Indices: 80527797--80527995 Score: 211
Period size: 80 Copynumber: 2.5 Consensus size: 80
80527787 TATGTGCATA
** * ** * *
80527797 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACTG
1 GCATTCGTGCGGGTTATTACGACCGAGCCAAATCCCGAAGGCATTCGTGCGGGTTATTATAACCG
** *
80527862 GGTTAAGTTGCGAAG
66 GGTTAAGTCCCAAAG
* * ** **
80527877 GCATTCGTGCGGGTTATTACGACTGGGTTACGTCCCGAAGGCATTCGTGCGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTACGACCGAGCCAAATCCCGAAGGCATTCGTGCGGGTTATTATAACCG
80527942 GGTTAAGTCCCAAAG
66 GGTTAAGTCCCAAAG
* * *
80527957 GCATTCGTGCTGGTTGTTAC-ATCCGAGCCAAATTCCGAA
1 GCATTCGTGCGGGTTATTACGA-CCGAGCCAAATCCCGAA
80527996 AGTATTTATG
Statistics
Matches: 101, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
79 1 0.01
80 100 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (80 bp):
GCATTCGTGCGGGTTATTACGACCGAGCCAAATCCCGAAGGCATTCGTGCGGGTTATTATAACCG
GGTTAAGTCCCAAAG
Found at i:80531035 original size:125 final size:125
Alignment explanation
Indices: 80530810--80531307 Score: 753
Period size: 125 Copynumber: 4.0 Consensus size: 125
80530800 GGCCAATCAT
* * * * * *
80530810 GAACTACTTTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGATGAGATTGCATC
1 GAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAGTGCATC
* *
80530875 CTGCTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTCAG
66 CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTCAG
* * * *
80530935 GAACTACTATAGAAAAAGAGCGTCTACATGGGAGCTTTTTTCTTTAATTTTGCTGACACTGCATC
1 GAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAGTGCATC
*
80531000 CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTAG
66 CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTCAG
* * *
80531060 GAATTACTATAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCTGTAATTTTGCTGACAGTGCATC
1 GAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAGTGCATC
* * *
80531125 CTGCTTGAAGCATTTTTGACACTATTTTTTTAGAAACGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA-TTTTTCAG
* * *
80531186 GAACTACTGTAGAAAAAGAGTGTCCACGTGGAAGCTTTTTTCTGTAATTTTGCTGACAGTGCATC
1 GAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAGTGCATC
** * *
80531251 CTGCTTGAAGTGTTTTTGACACTAATTGTTCAGAAACGTCTTCTCAAAATTATTTTT
66 CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTT
80531308 TCAGAGTACA
Statistics
Matches: 338, Mismatches: 34, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
125 225 0.67
126 113 0.33
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (125 bp):
GAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAGTGCATC
CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTCAG
Found at i:80531295 original size:251 final size:250
Alignment explanation
Indices: 80530814--80531308 Score: 783
Period size: 251 Copynumber: 2.0 Consensus size: 250
80530804 AATCATGAAC
* * * * *
80530814 TACTTTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGATGAGATTGCATCCTGC
1 TACTATAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCAGAAATTTTGATGACAGTGCATCCTGC
*
80530879 TTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTCAGGAACTACTA
66 TTGAAGCATTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTCAGGAACTACTA
* * *
80530944 TAGAAAAAGAGCGTCTACATGGGAGCTTTTTTCTTTAATTTTGCTGACACTGCATCCTGCTTGAA
131 TAGAAAAAGAGCGTCCACATGGAAGCTTTTTTCTGTAATTTTGCTGACACTGCATCCTGCTTGAA
*
80531009 GCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTAGGAAT
196 GCATTTTTGACACTAATTGTTCAGAAACATCTTCTCAAAATTATTTTTTAGGAAT
* * *
80531064 TACTATAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCTGTAATTTTGCTGACAGTGCATCCTGC
1 TACTATAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCAGAAATTTTGATGACAGTGCATCCTGC
* *
80531129 TTGAAGCATTTTTGACACTATTTTTTTAGAAACGTCTTCTCAAAATTATTTTTTCAGGAACTACT
66 TTGAAGCATTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTA-TTTTTCAGGAACTACT
* * * *
80531194 GTAGAAAAAGAGTGTCCACGTGGAAGCTTTTTTCTGTAATTTTGCTGACAGTGCATCCTGCTTGA
130 ATAGAAAAAGAGCGTCCACATGGAAGCTTTTTTCTGTAATTTTGCTGACACTGCATCCTGCTTGA
** *
80531259 AGTGTTTTTGACACTAATTGTTCAGAAACGTCTTCTCAAAATTATTTTTT
195 AGCATTTTTGACACTAATTGTTCAGAAACATCTTCTCAAAATTATTTTTT
80531309 CAGAGTACAA
Statistics
Matches: 222, Mismatches: 22, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
250 102 0.46
251 120 0.54
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (250 bp):
TACTATAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCAGAAATTTTGATGACAGTGCATCCTGC
TTGAAGCATTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTCAGGAACTACTA
TAGAAAAAGAGCGTCCACATGGAAGCTTTTTTCTGTAATTTTGCTGACACTGCATCCTGCTTGAA
GCATTTTTGACACTAATTGTTCAGAAACATCTTCTCAAAATTATTTTTTAGGAAT
Found at i:80531498 original size:240 final size:236
Alignment explanation
Indices: 80531172--80531651 Score: 843
Period size: 240 Copynumber: 2.0 Consensus size: 236
80531162 GTCTTCTCAA
* *
80531172 AATTATTTTTTCAGGAACTACTGTAGAAAAAGAGTGTCCACGTGGAAGCTTTTTTCTGTAATTTT
1 AATTATTTTTTCAGGAACTACTGTAGAAAAAGAGCGCCCACGTGGAAGCTTTTTTCTGTAATTTT
*
80531237 GCTGACAGTGCATCCTGCTTGAAGTGTTTTTGACACTAATTGTTCAGAAACGTCTTCTCAAAATT
66 GCTGACAGTGCATCCTGCTTGAAGGGTTTTTGACACTAATTGTTCAGAAACGTCTTCTCAAAATT
80531302 ATTTTTTCAGAGTACAAAATAGACAATTTTGTTAAAAAAATAAACACAATGTTATTTTTAAAAAA
131 ATTTTTTCAGAGTACAAAATAGACAATTTTGTT---AAAA-AAACACAATGTTATTTTTAAAAAA
80531367 TCCTAAACCCTAATTTAATTAAACTTAACCTAAACCTTACACCAT
192 TCCTAAACCCTAATTTAATTAAACTTAACCTAAACCTTACACCAT
* * *
80531412 AATTATTTTTTCAGGAACTACTGTCGAAAAAGAGCGCCCACGTGGAAGTTTTTTTCTGTATTTTT
1 AATTATTTTTTCAGGAACTACTGTAGAAAAAGAGCGCCCACGTGGAAGCTTTTTTCTGTAATTTT
* * *
80531477 GCTGACAGTGCATCTTGCTTGAAGGGTTTTTGACACTATTTGTTCAGAAATGTCTTCTCAAAATT
66 GCTGACAGTGCATCCTGCTTGAAGGGTTTTTGACACTAATTGTTCAGAAACGTCTTCTCAAAATT
80531542 ATTTTTTCAGAGTACAAAATAGACAATTTTGTTAAAAAAACACAATGTTATTTTTAAAAAATCCT
131 ATTTTTTCAGAGTACAAAATAGACAATTTTGTTAAAAAAACACAATGTTATTTTTAAAAAATCCT
80531607 AAACCCTAATTTAATTAAACTTAACCTAAACCTTACACCAT
196 AAACCCTAATTTAATTAAACTTAACCTAAACCTTACACCAT
80531648 AATT
1 AATT
80531652 TAATTTATTT
Statistics
Matches: 231, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
236 73 0.32
237 4 0.02
240 154 0.67
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.36
Consensus pattern (236 bp):
AATTATTTTTTCAGGAACTACTGTAGAAAAAGAGCGCCCACGTGGAAGCTTTTTTCTGTAATTTT
GCTGACAGTGCATCCTGCTTGAAGGGTTTTTGACACTAATTGTTCAGAAACGTCTTCTCAAAATT
ATTTTTTCAGAGTACAAAATAGACAATTTTGTTAAAAAAACACAATGTTATTTTTAAAAAATCCT
AAACCCTAATTTAATTAAACTTAACCTAAACCTTACACCAT
Found at i:80531753 original size:22 final size:22
Alignment explanation
Indices: 80531725--80531766 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
80531715 CCCTAAATCC
80531725 TAATTTATTTAAAACCCTAATT
1 TAATTTATTTAAAACCCTAATT
80531747 TAATTTATTTAAAACCCTAA
1 TAATTTATTTAAAACCCTAA
80531767 AAACCCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (22 bp):
TAATTTATTTAAAACCCTAATT
Found at i:80531820 original size:34 final size:35
Alignment explanation
Indices: 80531747--80531821 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 35
80531737 AACCCTAATT
* * *
80531747 TAATTTATTTAAAACCCTAAAAACCCTAATTTAAT
1 TAATTTATTTAAAACACTAAAAACCCTAAATTAAA
**
80531782 TAATTTATTTAAAA-ACTTTAAACCCTAAATTAAA
1 TAATTTATTTAAAACACTAAAAACCCTAAATTAAA
80531816 TAATTT
1 TAATTT
80531822 TAAAAAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
34 21 0.60
35 14 0.40
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (35 bp):
TAATTTATTTAAAACACTAAAAACCCTAAATTAAA
Found at i:80531931 original size:35 final size:34
Alignment explanation
Indices: 80531873--80531951 Score: 86
Period size: 35 Copynumber: 2.3 Consensus size: 34
80531863 ACTAAAATTC
*
80531873 TAAACCATAACTTTTTTAACAAAAACCTAAACAT
1 TAAACCCTAACTTTTTTAACAAAAACCTAAACAT
** * * *
80531907 TAAACCCTAACTTATTTTGGCAAAATCCTAACCCT
1 TAAACCCTAACTT-TTTTAACAAAAACCTAAACAT
*
80531942 AAAACCCTAA
1 TAAACCCTAA
80531952 AAAACCCTAG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
34 12 0.32
35 25 0.68
ACGTcount: A:0.44, C:0.25, G:0.03, T:0.28
Consensus pattern (34 bp):
TAAACCCTAACTTTTTTAACAAAAACCTAAACAT
Found at i:80537766 original size:30 final size:30
Alignment explanation
Indices: 80537711--80537772 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
80537701 CACTAAGCAA
80537711 GTTTCATATACATGTATCATCCATTTC-AT
1 GTTTCATATACATGTATCATCCATTTCTAT
80537740 GTTTCAATATATCATGTAAT-AT-CATTTCTAT
1 GTTTC-ATATA-CATGT-ATCATCCATTTCTAT
80537771 GT
1 GT
80537773 ATTTCATGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 5 0.17
30 11 0.38
31 11 0.38
32 2 0.07
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.47
Consensus pattern (30 bp):
GTTTCATATACATGTATCATCCATTTCTAT
Found at i:80537966 original size:25 final size:25
Alignment explanation
Indices: 80537933--80538011 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 25
80537923 TGCTTATACA
80537933 AGCTATGAATTGGTAAGCTCTCAAG
1 AGCTATGAATTGGTAAGCTCTCAAG
* *
80537958 AGCTGTGAATTGGTAAGCTCAT-ACG
1 AGCTATGAATTGGTAAGCTC-TCAAG
* ** *
80537983 AGCTAAGAATCAGTAAGCTCTCATG
1 AGCTATGAATTGGTAAGCTCTCAAG
80538008 AGCT
1 AGCT
80538012 GCAAATCTAG
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
24 1 0.02
25 43 0.96
26 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (25 bp):
AGCTATGAATTGGTAAGCTCTCAAG
Found at i:80538035 original size:25 final size:26
Alignment explanation
Indices: 80537970--80538037 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
80537960 CTGTGAATTG
80537970 GTAAGCTCATACGAGCT-AAGAATCA
1 GTAAGCTCATACGAGCTGAAGAATCA
* *
80537995 GTAAGCTC-TCATGAGCTGCA-AATCTA
1 GTAAGCTCAT-ACGAGCTGAAGAATC-A
80538021 G-AAGCTCATACGAGCTG
1 GTAAGCTCATACGAGCTG
80538038 TGGTGTGCCT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
24 1 0.03
25 31 0.86
26 4 0.11
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (26 bp):
GTAAGCTCATACGAGCTGAAGAATCA
Found at i:80541615 original size:42 final size:42
Alignment explanation
Indices: 80541560--80541686 Score: 132
Period size: 42 Copynumber: 3.0 Consensus size: 42
80541550 TGAAGGCTGC
* * *
80541560 ACAGAAGCACATAAGTGCTAAACAGAAACCCATAAGGGTTGA
1 ACAGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTGA
* * * * *
80541602 ACGGAAGCTCATAAGAGCTGAA-TGAAAACCCGTAAAGGTTAA
1 ACAGAAGCTCATAAGAGCTGAACAG-AAACCCATAAGGGTTGA
* *
80541644 ACAGAAGCTCA-ATAGAGCTGAACGGAAACCCATTAGGGTTGA
1 ACAGAAGCTCATA-AGAGCTGAACAGAAACCCATAAGGGTTGA
80541686 A
1 A
80541687 TTAAAACTCG
Statistics
Matches: 68, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
41 2 0.03
42 65 0.96
43 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.24, T:0.16
Consensus pattern (42 bp):
ACAGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTGA
Found at i:80541623 original size:21 final size:21
Alignment explanation
Indices: 80541555--80541623 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 21
80541545 AAATCTGAAG
* *
80541555 GCTGCACAGAAGCACATAAGT
1 GCTGAACAGAAGCACATAAGA
* * * *
80541576 GCTAAACAGAAACCCATAAGG
1 GCTGAACAGAAGCACATAAGA
* * *
80541597 GTTGAACGGAAGCTCATAAGA
1 GCTGAACAGAAGCACATAAGA
80541618 GCTGAA
1 GCTGAA
80541624 TGAAAACCCG
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.41, C:0.20, G:0.25, T:0.14
Consensus pattern (21 bp):
GCTGAACAGAAGCACATAAGA
Found at i:80541821 original size:24 final size:24
Alignment explanation
Indices: 80541789--80541855 Score: 107
Period size: 24 Copynumber: 2.8 Consensus size: 24
80541779 GGATAATTTG
*
80541789 CCGTCAATTCATCCTTTTCATATA
1 CCGTCAATTCATCCTTTGCATATA
* *
80541813 CCGTCAATTTATCCTTTGCATTTA
1 CCGTCAATTCATCCTTTGCATATA
80541837 CCGTCAATTCATCCTTTGC
1 CCGTCAATTCATCCTTTGC
80541856 CATAGAACGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.30, G:0.07, T:0.42
Consensus pattern (24 bp):
CCGTCAATTCATCCTTTGCATATA
Found at i:80551242 original size:24 final size:25
Alignment explanation
Indices: 80551215--80551261 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80551205 GCGTTACGAT
80551215 TGTA-AACCAAGTGATTTCCCTTCA
1 TGTAGAACCAAGTGATTTCCCTTCA
* *
80551239 TGTAGCATCAAGTGATTTCCCTT
1 TGTAGAACCAAGTGATTTCCCTT
80551262 GTCTTTGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (25 bp):
TGTAGAACCAAGTGATTTCCCTTCA
Found at i:80554094 original size:40 final size:40
Alignment explanation
Indices: 80554050--80554237 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
80554040 GCTACTAGCT
80554050 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
80554090 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
80554130 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
80554170 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCAGTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* *
80554209 CAAATGCCTTCGGGACTTATCACGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
80554238 CAATCCGAAT
Statistics
Matches: 135, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.24
40 101 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:80560994 original size:20 final size:21
Alignment explanation
Indices: 80560969--80561016 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
80560959 TTGTGTGATT
*
80560969 AATTAGGTTTTAGTT-AGGTG
1 AATTAGGTTTGAGTTAAGGTG
*
80560989 AATTA-GTTTGAGTTAAGGTT
1 AATTAGGTTTGAGTTAAGGTG
80561009 AATTAGGT
1 AATTAGGT
80561017 GAGAGGACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 8 0.33
20 14 0.58
21 2 0.08
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (21 bp):
AATTAGGTTTGAGTTAAGGTG
Found at i:80578979 original size:15 final size:15
Alignment explanation
Indices: 80578953--80578989 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
80578943 ATTGAGGTGA
80578953 GTATTGGTATTGAATT
1 GTATT-GTATTGAATT
80578969 GTATTGTATTGAATT
1 GTATTGTATTGAATT
*
80578984 GAATTG
1 GTATTG
80578990 GATTATGAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (15 bp):
GTATTGTATTGAATT
Found at i:80580657 original size:19 final size:20
Alignment explanation
Indices: 80580620--80580658 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
80580610 AAAGGGACAT
*
80580620 TATGATTAAATTGTGATGTG
1 TATGATTAAATTATGATGTG
*
80580640 TATGA-TAAATTATTATGTG
1 TATGATTAAATTATGATGTG
80580659 ATTATTCATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
TATGATTAAATTATGATGTG
Found at i:80589735 original size:27 final size:26
Alignment explanation
Indices: 80589698--80589812 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
80589688 AGCATGGCTG
* *
80589698 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
80589724 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
80589752 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
80589779 CCATATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
80589806 CCAGAAC
1 CCAGAAC
80589813 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.06
27 56 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:80589757 original size:54 final size:54
Alignment explanation
Indices: 80589698--80589812 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
80589688 AGCATGGCTG
*
80589698 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * *
80589752 CCAGAACAGATATATGTGGCAGAGCCACCATATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
80589806 CCAGAAC
1 CCAGAAC
80589813 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:80591456 original size:26 final size:26
Alignment explanation
Indices: 80591420--80591529 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
80591410 CATGAAATTC
80591420 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
80591446 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
80591472 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
80591498 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
80591524 TTATCA
1 TTATCA
80591530 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:80595505 original size:27 final size:26
Alignment explanation
Indices: 80595468--80595582 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
80595458 AGCATGGCTG
* *
80595468 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
80595494 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
80595522 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
80595549 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
80595576 CCAGAAC
1 CCAGAAC
80595583 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:80595527 original size:54 final size:54
Alignment explanation
Indices: 80595468--80595582 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
80595458 AGCATGGCTG
*
80595468 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
80595522 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
80595576 CCAGAAC
1 CCAGAAC
80595583 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:80597233 original size:26 final size:26
Alignment explanation
Indices: 80597197--80597306 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
80597187 CATGAAATTC
80597197 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
80597223 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
80597249 TTATCATGGAACATTTACCTGACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
80597275 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
80597301 TTATCA
1 TTATCA
80597307 ATTTGCATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:80600764 original size:40 final size:40
Alignment explanation
Indices: 80600709--80600941 Score: 344
Period size: 40 Copynumber: 5.8 Consensus size: 40
80600699 TTATTTGATG
*
80600709 TGGAATGGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * * *
80600749 TGGAATCGTATCCGGGTTTAAAGGCCCGCAGGCTTCGCGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
80600789 TGGAATTGTATCCGGGCTTAAAGACCCACAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
80600829 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
80600869 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * *
80600909 TGGAA-TGACATCCGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCCGGGCTTAAAGACCCGCAGGCT
80600942 GTGATAGATA
Statistics
Matches: 175, Mismatches: 17, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 17 0.10
40 158 0.90
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:80610569 original size:13 final size:13
Alignment explanation
Indices: 80610518--80610550 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
80610508 TGCCAGAAGC
80610518 AATTAAAAAGAAA
1 AATTAAAAAGAAA
80610531 AATTAGAAAAGAAA
1 AATTA-AAAAGAAA
80610545 AATTAA
1 AATTAA
80610551 GCTAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (13 bp):
AATTAAAAAGAAA
Found at i:80611972 original size:27 final size:27
Alignment explanation
Indices: 80611934--80612001 Score: 136
Period size: 27 Copynumber: 2.5 Consensus size: 27
80611924 TGGTTTATCA
80611934 GGTATTTTGGTCATTTTACCCTATGGG
1 GGTATTTTGGTCATTTTACCCTATGGG
80611961 GGTATTTTGGTCATTTTACCCTATGGG
1 GGTATTTTGGTCATTTTACCCTATGGG
80611988 GGTATTTTGGTCAT
1 GGTATTTTGGTCAT
80612002 CACTTTAGCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.15, C:0.13, G:0.26, T:0.46
Consensus pattern (27 bp):
GGTATTTTGGTCATTTTACCCTATGGG
Found at i:80619863 original size:10 final size:10
Alignment explanation
Indices: 80619847--80619885 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
80619837 CGAAAATAAC
80619847 TAAAATTAAT
1 TAAAATTAAT
*
80619857 CAAAATTAATT
1 TAAAATTAA-T
80619868 ATAAAATTAAT
1 -TAAAATTAAT
80619879 TAAAATT
1 TAAAATT
80619886 CAACATGTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 15 0.60
11 2 0.08
12 8 0.32
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (10 bp):
TAAAATTAAT
Found at i:80622849 original size:14 final size:14
Alignment explanation
Indices: 80622817--80622848 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
80622807 CTTTTTTTAC
80622817 TAAAATAATAAATA
1 TAAAATAATAAATA
80622831 TAAAATAA-AAATA
1 TAAAATAATAAATA
80622844 TAAAA
1 TAAAA
80622849 AGCAAAACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (14 bp):
TAAAATAATAAATA
Found at i:80626056 original size:8 final size:8
Alignment explanation
Indices: 80626043--80626069 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
80626033 GAAATTTATA
80626043 TAAATTTT
1 TAAATTTT
80626051 TAAATTTT
1 TAAATTTT
80626059 TAAATTTT
1 TAAATTTT
80626067 TAA
1 TAA
80626070 GTGATGATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TAAATTTT
Found at i:80630230 original size:19 final size:21
Alignment explanation
Indices: 80630192--80630235 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
80630182 AAATTTAATA
80630192 AAATAATATTTGAATCGAGTC
1 AAATAATATTTGAATCGAGTC
* *
80630213 AAATAA-ATTT-ATTCGAGTT
1 AAATAATATTTGAATCGAGTC
80630232 AAAT
1 AAAT
80630236 TAAAAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 11 0.52
20 4 0.19
21 6 0.29
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.36
Consensus pattern (21 bp):
AAATAATATTTGAATCGAGTC
Found at i:80633378 original size:19 final size:19
Alignment explanation
Indices: 80633355--80633405 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
80633345 AAAAGTTCCA
* *
80633355 AAAAATTCAAAATAATTTTT
1 AAAAGTTCAAAAT-ATTTAT
80633375 AAAAGTTC-AAATATTTAT
1 AAAAGTTCAAAATATTTAT
*
80633393 AAAATTTCAAAAT
1 AAAAGTTCAAAAT
80633406 TTATATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 12 0.44
19 8 0.30
20 7 0.26
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAAGTTCAAAATATTTAT
Found at i:80633395 original size:18 final size:18
Alignment explanation
Indices: 80633364--80633410 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
80633354 AAAAAATTCA
*
80633364 AAATAATTTTTAAAAGTTC
1 AAAT-ATTTATAAAAGTTC
*
80633383 AAATATTTATAAAATTTC
1 AAATATTTATAAAAGTTC
80633401 AAA-ATTTATA
1 AAATATTTATA
80633411 TTTTTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 7 0.27
18 15 0.58
19 4 0.15
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
AAATATTTATAAAAGTTC
Found at i:80637094 original size:17 final size:17
Alignment explanation
Indices: 80637072--80637114 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
80637062 ATTTTATTTA
**
80637072 AAATGTCAATTTCCATC
1 AAATGTCAATTAACATC
*
80637089 AAATGTCCATTAACATC
1 AAATGTCAATTAACATC
80637106 AAAT-TCAAT
1 AAATGTCAAT
80637115 ACAATCATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.33
Consensus pattern (17 bp):
AAATGTCAATTAACATC
Found at i:80641916 original size:19 final size:20
Alignment explanation
Indices: 80641884--80641923 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
80641874 ATATAATAAC
80641884 AAAACAAATAAGAAAAAGAA
1 AAAACAAATAAGAAAAAGAA
* *
80641904 AAAAGAAAT-AGAAATAGAA
1 AAAACAAATAAGAAAAAGAA
80641923 A
1 A
80641924 GCCAAAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.78, C:0.03, G:0.12, T:0.07
Consensus pattern (20 bp):
AAAACAAATAAGAAAAAGAA
Found at i:80643940 original size:19 final size:21
Alignment explanation
Indices: 80643916--80643958 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
80643906 GCACGTAGGA
80643916 TGATTGT-TTTGA-CATGTTT
1 TGATTGTATTTGATCATGTTT
*
80643935 TGATTGTATTTGATCGTGTTT
1 TGATTGTATTTGATCATGTTT
80643956 TGA
1 TGA
80643959 ACTGGTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 5 0.24
21 9 0.43
ACGTcount: A:0.16, C:0.05, G:0.23, T:0.56
Consensus pattern (21 bp):
TGATTGTATTTGATCATGTTT
Found at i:80645788 original size:23 final size:23
Alignment explanation
Indices: 80645758--80645802 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
80645748 TTTTTAGAGA
80645758 GGTGCTAGAAAGGGAAATGATAG
1 GGTGCTAGAAAGGGAAATGATAG
80645781 GGTGCTAGAAAGGGAAATGATA
1 GGTGCTAGAAAGGGAAATGATA
80645803 CTGTTACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.04, G:0.38, T:0.18
Consensus pattern (23 bp):
GGTGCTAGAAAGGGAAATGATAG
Found at i:80648724 original size:20 final size:20
Alignment explanation
Indices: 80648687--80648723 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
80648677 GACTAAATTG
*
80648687 AAAACTTAGGGAAATTTTAC
1 AAAACTTAGGAAAATTTTAC
80648707 AAAACTTA-GAAAATTTT
1 AAAACTTAGGAAAATTTT
80648724 TGCAATAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.32
Consensus pattern (20 bp):
AAAACTTAGGAAAATTTTAC
Found at i:80657444 original size:22 final size:22
Alignment explanation
Indices: 80657418--80657464 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
80657408 TATTTTCTTG
80657418 TTTAAGCTCTAGAAATTCCTTC
1 TTTAAGCTCTAGAAATTCCTTC
*
80657440 TTTAAGCTCTAGAAATTCTTTC
1 TTTAAGCTCTAGAAATTCCTTC
80657462 TTT
1 TTT
80657465 TTCTAATCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.09, T:0.47
Consensus pattern (22 bp):
TTTAAGCTCTAGAAATTCCTTC
Found at i:80661295 original size:21 final size:22
Alignment explanation
Indices: 80661271--80661312 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
80661261 TTATTCAATA
*
80661271 AAAATTATAA-AAACTAAAATT
1 AAAATAATAATAAACTAAAATT
*
80661292 AAAATAATAATAAAGTAAAAT
1 AAAATAATAATAAACTAAAAT
80661313 GAAATAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (22 bp):
AAAATAATAATAAACTAAAATT
Found at i:80669127 original size:18 final size:17
Alignment explanation
Indices: 80669100--80669133 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
80669090 TCGCTTTCAC
*
80669100 AGAAAGAAAATAGAAAAA
1 AGAAAAAAAAT-GAAAAA
80669118 AGAAAAAAAATGAAAA
1 AGAAAAAAAATGAAAA
80669134 GGGGAAGAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (17 bp):
AGAAAAAAAATGAAAAA
Found at i:80669203 original size:19 final size:19
Alignment explanation
Indices: 80669176--80669250 Score: 59
Period size: 19 Copynumber: 4.0 Consensus size: 19
80669166 AAGAAGAATA
*
80669176 AAAATTAAAAATTAAA-AAT
1 AAAAGTAAAAA-TAAATAAT
80669195 AAAAGTAAAAATAAATAAT
1 AAAAGTAAAAATAAATAAT
**
80669214 AATAA-TAGTAAT-AATAAT
1 AA-AAGTAAAAATAAATAAT
*
80669232 AATAA-TAATAATAAATAAT
1 AA-AAGTAAAAATAAATAAT
80669251 TAAACTAAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
18 21 0.43
19 26 0.53
20 2 0.04
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (19 bp):
AAAAGTAAAAATAAATAAT
Found at i:80669205 original size:7 final size:6
Alignment explanation
Indices: 80669172--80669246 Score: 60
Period size: 6 Copynumber: 12.0 Consensus size: 6
80669162 AAGGAAGAAG
* * **
80669172 AATAAA AATTAAA AATTAAA AATAAA AGTAAA AATAAA TAATAAT AATAGT
1 AATAAA AA-TAAA AA-TAAA AATAAA AATAAA AATAAA -AATAAA AATAAA
* * *
80669223 AATAAT AATAAT AATAAT AATAAA
1 AATAAA AATAAA AATAAA AATAAA
80669247 TAATTAAACT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
6 43 0.70
7 18 0.30
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.27
Consensus pattern (6 bp):
AATAAA
Found at i:80669216 original size:3 final size:3
Alignment explanation
Indices: 80669208--80669250 Score: 68
Period size: 3 Copynumber: 14.0 Consensus size: 3
80669198 AGTAAAAATA
*
80669208 AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
80669251 TAAACTAAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:80681919 original size:46 final size:46
Alignment explanation
Indices: 80681790--80681952 Score: 143
Period size: 46 Copynumber: 3.5 Consensus size: 46
80681780 TGAGAGTCAG
* * * * * *
80681790 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGT-GCTAT
1 TGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGA-TAGCCAA
80681838 TGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATG-TAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGAT-AGCCAA
* * * * *
80681884 TGTAAGACATGTCTGGGACATGCGT-TGGCTACGAGATGATAGTCAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGATGATAGCCAA
*
80681930 TGTAAGACCATGTCTAGGACATG
1 TGTAAGA-CATGTCTGGGACATG
80681953 GCTTCAACTT
Statistics
Matches: 98, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
44 1 0.01
45 3 0.03
46 58 0.59
47 29 0.30
48 7 0.07
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGATAGCCAA
Found at i:80701880 original size:96 final size:96
Alignment explanation
Indices: 80701757--80701936 Score: 256
Period size: 96 Copynumber: 1.9 Consensus size: 96
80701747 ACTTGTCGAG
* *
80701757 GCCGATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTTATCTCAAT-GCCGATACCATGTCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACT-GTCTCTTATATC-ATGGCCAATACCATGTCC
*
80701820 CAGACATGGTCTTACAATGGCTCTCACAACATC
64 CAAACATGGTCTTACAATGGCTCTCACAACATC
* * * *
80701853 GCCGATGCCATGTTCCAACCATGGTCTTACACTGTCTCTTATATCGTGGCCAATGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGTCTCTTATATCATGGCCAATACCATGTCCCA
*
80701918 AACATGGTCTTACACTGGC
66 AACATGGTCTTACAATGGC
80701937 ACACATATCA
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
95 2 0.03
96 72 0.97
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGTCTCTTATATCATGGCCAATACCATGTCCCA
AACATGGTCTTACAATGGCTCTCACAACATC
Found at i:80701945 original size:48 final size:48
Alignment explanation
Indices: 80701712--80701946 Score: 222
Period size: 48 Copynumber: 4.9 Consensus size: 48
80701702 GTGAATTGCT
* * * * * * *
80701712 GATGCCATGTTCCAAACAAGGACTTACATTGGCTCACTTGTCGA-GGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC-ATGGCC
* * *
80701760 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATCTCAAT-GCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC-ATGGCC
* * * * * *
80701808 GATACCATGTCCCAGACATGGTCTTACAATGGCTCTCACAACATCGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATGGCC
* * * * *
80701856 GATGCCATGTTCCAACCATGGTCTTACACTGTCTCTTATATCGTGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATGGCC
* * *
80701904 AATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCA
80701947 CCCAAATTTC
Statistics
Matches: 148, Mismatches: 37, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
47 2 0.01
48 146 0.99
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATGGCC
Found at i:80704009 original size:23 final size:23
Alignment explanation
Indices: 80703961--80704009 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
80703951 TGCTAAAGTC
* **
80703961 TAACTTTTTCCCAAAGCCTGTTG
1 TAACTTTTTCCCAAAACCTGAAG
80703984 TAACTTTTT-CCAAAACCTCGAAG
1 TAACTTTTTCCCAAAACCT-GAAG
80704007 TAA
1 TAA
80704010 ACCTTAGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.35
Consensus pattern (23 bp):
TAACTTTTTCCCAAAACCTGAAG
Found at i:80708725 original size:30 final size:29
Alignment explanation
Indices: 80708668--80708725 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
80708658 AACCTACACA
* *
80708668 ACATTAACCAAAACCAATCCAAGCATAAC
1 ACATTAACCAAAACCAACCCAACCATAAC
80708697 ACATATAACCAAAA-CAACCACAACCATAA
1 ACAT-TAACCAAAACCAACC-CAACCATAA
80708726 GAAATTTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.55, C:0.31, G:0.02, T:0.12
Consensus pattern (29 bp):
ACATTAACCAAAACCAACCCAACCATAAC
Found at i:80709431 original size:48 final size:48
Alignment explanation
Indices: 80709360--80709594 Score: 238
Period size: 48 Copynumber: 4.9 Consensus size: 48
80709350 GATGAATTGT
* * * *
80709360 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGC
* * * * *
80709408 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTCTCAATGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGC
* * * * * *
80709456 CTATGCCATGTCCCAAATATGGTCTTACACTGGCTCTCACAAC-ACCGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGA-GGC
* * * *
80709504 CGATGCCATGTTCAAAACATGGTCTTACATTGGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGC
* * * * *
80709552 TGATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC
80709595 ACCCAAATGT
Statistics
Matches: 151, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
47 1 0.01
48 150 0.99
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGC
Found at i:80714006 original size:31 final size:31
Alignment explanation
Indices: 80713968--80714035 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
80713958 TTACAATTTG
*
80713968 GTCACTAAACTATTTAGAAATTTTCATTTAA
1 GTCACTAAACTATTCAGAAATTTTCATTTAA
* * *
80713999 GTCACTAAACTATTCATAAGTTTTTATTTAA
1 GTCACTAAACTATTCAGAAATTTTCATTTAA
*
80714030 GACACT
1 GTCACT
80714036 TGGCTATTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (31 bp):
GTCACTAAACTATTCAGAAATTTTCATTTAA
Found at i:80725234 original size:79 final size:81
Alignment explanation
Indices: 80725098--80725280 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
80725088 TCGAATGATG
* *
80725098 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
80725162 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
80725177 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
80725239 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
80725257 ACCGGGCTATGTTCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
80725281 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:80725289 original size:40 final size:39
Alignment explanation
Indices: 80725099--80725282 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
80725089 CGAATGATGT
* * * *
80725099 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
80725139 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
80725179 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80725217 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
80725258 CCGGGCTATGTTCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
80725283 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80725304 original size:79 final size:79
Alignment explanation
Indices: 80725151--80725305 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
80725141 GGACTAAGAT
* **
80725151 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
80725216 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * * *
80725230 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTTCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
80725293 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
80725306 ATTTCGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.62
80 23 0.35
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:80736046 original size:20 final size:20
Alignment explanation
Indices: 80736021--80736058 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80736011 GAAGCAAAAA
80736021 TACCAAG-TGAAAATGAAGTC
1 TACCAAGCTGAAAA-GAAGTC
80736041 TACCAAGCTGAAAAGAAG
1 TACCAAGCTGAAAAGAAG
80736059 CTTGGAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.47, C:0.16, G:0.21, T:0.16
Consensus pattern (20 bp):
TACCAAGCTGAAAAGAAGTC
Found at i:80742800 original size:13 final size:14
Alignment explanation
Indices: 80742782--80742815 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
80742772 AATACCAATA
80742782 AATAAATAAAA-TT
1 AATAAATAAAAGTT
80742795 AATAAATAAAAGTTT
1 AATAAATAAAAG-TT
80742810 AATAAA
1 AATAAA
80742816 CAGTCTAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
15 8 0.42
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (14 bp):
AATAAATAAAAGTT
Found at i:80743812 original size:22 final size:23
Alignment explanation
Indices: 80743787--80743829 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
80743777 CATATTGTCA
80743787 TTATTACTTC-ATTATTTTTATT
1 TTATTACTTCTATTATTTTTATT
* *
80743809 TTATTATTTCTTTTATTTTTA
1 TTATTACTTCTATTATTTTTA
80743830 ATGCTTTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (23 bp):
TTATTACTTCTATTATTTTTATT
Found at i:80744106 original size:17 final size:17
Alignment explanation
Indices: 80744047--80744088 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
80744037 GATTAGTACC
80744047 ATTATTATAAAATCGAT
1 ATTATTATAAAATCGAT
*
80744064 ATTATTATAAAATTGAT
1 ATTATTATAAAATCGAT
*
80744081 GTTATTAT
1 ATTATTAT
80744089 TATTATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (17 bp):
ATTATTATAAAATCGAT
Found at i:80744113 original size:23 final size:23
Alignment explanation
Indices: 80744064--80744117 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
80744054 TAAAATCGAT
* *
80744064 ATTATTATAAAATTGATGTTATT
1 ATTATTATAAAATTGATATTATC
* *
80744087 ATTATTATAAAATTGGTATTCTC
1 ATTATTATAAAATTGATATTATC
80744110 ATTATTAT
1 ATTATTAT
80744118 TGTAGTTGCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (23 bp):
ATTATTATAAAATTGATATTATC
Found at i:80745652 original size:3 final size:3
Alignment explanation
Indices: 80745644--80745668 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
80745634 TTATATACAC
80745644 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
80745669 TTGCTAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:80761255 original size:63 final size:63
Alignment explanation
Indices: 80761179--80761304 Score: 225
Period size: 63 Copynumber: 2.0 Consensus size: 63
80761169 CACACTTCAG
* *
80761179 ACTTCAAACTCTTTCTGTTTGGCCCATTTTACTATTTAAAAATAATCATAAATATTTAAAACA
1 ACTTCAAACTCTTTCAGTTTGGCCCATTTTACTATTTAAAAACAATCATAAATATTTAAAACA
*
80761242 ACTTCAAACTCTTTCAGTTTGGTCCATTTTACTATTTAAAAACAATCATAAATATTTAAAACA
1 ACTTCAAACTCTTTCAGTTTGGCCCATTTTACTATTTAAAAACAATCATAAATATTTAAAACA
80761305 TATACTTTAT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (63 bp):
ACTTCAAACTCTTTCAGTTTGGCCCATTTTACTATTTAAAAACAATCATAAATATTTAAAACA
Found at i:80761433 original size:14 final size:14
Alignment explanation
Indices: 80761416--80761446 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
80761406 AGTAAAATCT
80761416 TTTCCGGAAAATAA
1 TTTCCGGAAAATAA
*
80761430 TTTCTGGAAAATAA
1 TTTCCGGAAAATAA
80761444 TTT
1 TTT
80761447 ACTTTTCTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (14 bp):
TTTCCGGAAAATAA
Found at i:80762896 original size:21 final size:21
Alignment explanation
Indices: 80762831--80762896 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 21
80762821 TATCCAACCA
*
80762831 AATAAATTTAATATCTAACAT
1 AATAAATTCAATATCTAACAT
* *
80762852 AATAAATTCAACAAGCTTAAAACAT
1 AATAAATTCAA-TATC-T--AACAT
80762877 AATAAATTCAATATCTAACA
1 AATAAATTCAATATCTAACA
80762897 AATTCAAGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
21 14 0.39
22 2 0.06
23 2 0.06
24 2 0.06
25 16 0.44
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.30
Consensus pattern (21 bp):
AATAAATTCAATATCTAACAT
Found at i:80762897 original size:32 final size:32
Alignment explanation
Indices: 80762870--80762930 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
80762860 CAACAAGCTT
* *
80762870 AAAACATAATAAATTCAATATCTAACAAATTC
1 AAAACATAATAAATTCAAAATCCAACAAATTC
* *
80762902 AAGACATAATAATTTCAAAATCCAACAAA
1 AAAACATAATAAATTCAAAATCCAACAAA
80762931 CTAAAATTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.57, C:0.16, G:0.02, T:0.25
Consensus pattern (32 bp):
AAAACATAATAAATTCAAAATCCAACAAATTC
Found at i:80766722 original size:25 final size:26
Alignment explanation
Indices: 80766674--80766725 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
80766664 AGTAACGAAC
**
80766674 AAGAAGAAAAAAAAAAGAGTTTTAAA
1 AAGAAGAAAAAAAAAAGAACTTTAAA
*
80766700 AAGAAG-AAAAAAATAGAACTTTAAA
1 AAGAAGAAAAAAAAAAGAACTTTAAA
80766725 A
1 A
80766726 TGAACATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.69, C:0.02, G:0.13, T:0.15
Consensus pattern (26 bp):
AAGAAGAAAAAAAAAAGAACTTTAAA
Found at i:80776083 original size:17 final size:18
Alignment explanation
Indices: 80776053--80776098 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
80776043 ATTTAAATTG
80776053 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
80776071 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
80776087 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
80776099 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:80778919 original size:56 final size:56
Alignment explanation
Indices: 80778838--80778951 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
80778828 TTATTTTCAA
80778838 TCACAAGAATGGGTTAAAGAGATAAATTTACTGCCATGATGAGTACTGCACTATTT
1 TCACAAGAATGGGTTAAAGAGATAAATTTACTGCCATGATGAGTACTGCACTATTT
*
80778894 TCACAAGAATGGGTTAAAGGGATAAATTTACTGCCATGATGAGTACTGCACTATTT
1 TCACAAGAATGGGTTAAAGAGATAAATTTACTGCCATGATGAGTACTGCACTATTT
80778950 TC
1 TC
80778952 CCACCAATCT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (56 bp):
TCACAAGAATGGGTTAAAGAGATAAATTTACTGCCATGATGAGTACTGCACTATTT
Found at i:80782259 original size:20 final size:21
Alignment explanation
Indices: 80782236--80782274 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
80782226 ATTACTTACC
*
80782236 ATAAACATTAA-AATTAAAAT
1 ATAAAAATTAATAATTAAAAT
80782256 ATAAAAATTAATAATTAAA
1 ATAAAAATTAATAATTAAA
80782275 TTCGGATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAAAAATTAATAATTAAAAT
Found at i:80782430 original size:23 final size:24
Alignment explanation
Indices: 80782376--80782430 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
80782366 TAGCTACGGA
80782376 AATTAAA-ACAATTAAAATTTATC
1 AATTAAATACAATTAAAATTTATC
80782399 AA-TACAATACAATT-AAATTT-TC
1 AATTA-AATACAATTAAAATTTATC
80782421 ACATTAAATA
1 A-ATTAAATA
80782431 TTTTAATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
22 5 0.18
23 15 0.54
24 8 0.29
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.35
Consensus pattern (24 bp):
AATTAAATACAATTAAAATTTATC
Found at i:80782958 original size:5 final size:5
Alignment explanation
Indices: 80782948--80783009 Score: 124
Period size: 5 Copynumber: 12.4 Consensus size: 5
80782938 TAATTATTAT
80782948 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
80782998 TAATA TAATA TA
1 TAATA TAATA TA
80783010 TATTCTTAAG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 57 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:80783074 original size:19 final size:20
Alignment explanation
Indices: 80783037--80783075 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
80783027 TAGTATAATT
*
80783037 TATTATTTTATACATATGTA
1 TATTATTTTATACACATGTA
80783057 TATTATTTT-TACACATGTA
1 TATTATTTTATACACATGTA
80783076 AACACCAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.54
Consensus pattern (20 bp):
TATTATTTTATACACATGTA
Found at i:80784145 original size:325 final size:325
Alignment explanation
Indices: 80783551--80784190 Score: 946
Period size: 325 Copynumber: 2.0 Consensus size: 325
80783541 ATTTAATTCG
* * *
80783551 AGTGGCTAGAGGTACACATCCTGTTGATACAGTGATACAACGAGGGAATACGTAAGAAGATGTGG
1 AGTGGCTAGAAGTACACATCCTGTTGATACAGTGATACAACGAAGGAATACATAAGAAGATGTGG
* *
80783616 TGGAGCTAATGGAGGTCGGTTCACCCAATCGGAGTGGAGAGCCGAAGATTCCAAAGAGTGAAAGT
66 TGGAGCTAATGGAGGTCAGTTCACCCAATCGGAGTGGAGAGCCGAAGATTACAAAGAGTGAAAGT
** *
80783681 GGAGAAAGTATGAAGGCTAAGTGTTGAGGGTCAACTAGCAGAGTATAGGTAAGTATATCTCAGAG
131 GGAGAAAGTATGAAGAATAAGTGTTGAGGGTCAACTAGCAGAGTATAGGCAAGTATATCTCAGAG
* *
80783746 AGTCGATCAATTGATCATCGTTTTGGAGGCTATTTATGGGCAAGGTCCCATGTAGGATGATGTTA
196 AGTCGATCAATTGATCATCGTTTTGGAGGCTATTTATGGGCAAGGTCCCATGCAGGATGACGTTA
* **
80783811 ACGTGTTGAGCCCGTAACTAGGCCATCATTGTGGGACGTGTGGGGCGAATGTCTTCAATAGGACA
261 ACGTGTTGAGCCCGCAACTAGGCCATCATTGTGGGACGTGTAAGGCGAATGTCTTCAATAGGACA
* * * *
80783876 AGTGGCTAGAAGTACATA-CCTTGTTGATACATTGATACAATGAAGGAATACATAGGAAGATGTG
1 AGTGGCTAGAAGTACACATCC-TGTTGATACAGTGATACAACGAAGGAATACATAAGAAGATGTG
* **
80783940 GTGGAGCTAATGGAGGTCAGTTTACCCAATCAGG-GTGGAGAGTTGAAGATTACAAAGAGTGAAA
65 GTGGAGCTAATGGAGGTCAGTTCACCCAATC-GGAGTGGAGAGCCGAAGATTACAAAGAGTGAAA
*
80784004 GTGGAGAAAGTATGAAGAATAAGTGCTT-AGGGTCAACT-GACAGAGTGTAGGCAAGTATATCTC
129 GTGGAGAAAGTATGAAGAATAAGTG-TTGAGGGTCAACTAG-CAGAGTATAGGCAAGTATATCTC
* ** **
80784067 TGAGAGTCGATCCCTTGATCATCGTTTTGGAGGCTATTTATGGGCAAGGTCCTGTGCAGGATGAC
192 AGAGAGTCGATCAATTGATCATCGTTTTGGAGGCTATTTATGGGCAAGGTCCCATGCAGGATGAC
* * * *
80784132 GTTAACTTGTTGAGCCCGCAACTAGGCCATCATTGTTGGATGTGTAAGGTGAATGTCTT
257 GTTAACGTGTTGAGCCCGCAACTAGGCCATCATTGTGGGACGTGTAAGGCGAATGTCTT
80784191 TGATGGGATG
Statistics
Matches: 281, Mismatches: 30, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
324 3 0.01
325 274 0.98
326 4 0.01
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (325 bp):
AGTGGCTAGAAGTACACATCCTGTTGATACAGTGATACAACGAAGGAATACATAAGAAGATGTGG
TGGAGCTAATGGAGGTCAGTTCACCCAATCGGAGTGGAGAGCCGAAGATTACAAAGAGTGAAAGT
GGAGAAAGTATGAAGAATAAGTGTTGAGGGTCAACTAGCAGAGTATAGGCAAGTATATCTCAGAG
AGTCGATCAATTGATCATCGTTTTGGAGGCTATTTATGGGCAAGGTCCCATGCAGGATGACGTTA
ACGTGTTGAGCCCGCAACTAGGCCATCATTGTGGGACGTGTAAGGCGAATGTCTTCAATAGGACA
Found at i:80789953 original size:23 final size:23
Alignment explanation
Indices: 80789923--80789970 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
80789913 GGGACTTTGG
80789923 CATACAAGTCTTGAGACATATGA
1 CATACAAGTCTTGAGACATATGA
80789946 CATACAAGTCTTGAGACATATGA
1 CATACAAGTCTTGAGACATATGA
80789969 CA
1 CA
80789971 CATGAAAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (23 bp):
CATACAAGTCTTGAGACATATGA
Found at i:80792007 original size:20 final size:19
Alignment explanation
Indices: 80791971--80792021 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
80791961 AAGGGCTATT
*
80791971 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
80791990 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
80792010 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
80792022 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:80794014 original size:24 final size:24
Alignment explanation
Indices: 80793987--80794057 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
80793977 ATCATAGAAA
80793987 GTGTACAT-TGGCACTATGTGTGCG
1 GTGTA-ATATGGCACTATGTGTGCG
*
80794011 GTGTAGTATGGCACTATGTGTGCG
1 GTGTAATATGGCACTATGTGTGCG
*
80794035 GAGTTGAATA--GCACTATGTGTGC
1 GTG-T-AATATGGCACTATGTGTGC
80794058 TGATTTGAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 1 0.02
24 36 0.88
25 1 0.02
26 3 0.07
ACGTcount: A:0.20, C:0.14, G:0.34, T:0.32
Consensus pattern (24 bp):
GTGTAATATGGCACTATGTGTGCG
Found at i:80794078 original size:26 final size:24
Alignment explanation
Indices: 80793997--80794067 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
80793987 GTGTACATTG
* * * *
80793997 GCACTATGTGTGCGGTGTAGTATG
1 GCACTATGTGTGCGGAGTTGAATA
80794021 GCACTATGTGTGCGGAGTTGAATA
1 GCACTATGTGTGCGGAGTTGAATA
* *
80794045 GCACTATGTGTGCTGATTTGAAT
1 GCACTATGTGTGCGGAGTTGAAT
80794068 GTCAACATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGAGTTGAATA
Found at i:80795909 original size:47 final size:44
Alignment explanation
Indices: 80795846--80795967 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 44
80795836 TATGTGTGCT
* * *
80795846 AGTGTAAAACATGTCTGGGACATGCATTGGCTACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-T--ATTGACGAGAGCC
*
80795892 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGTATT--GACGAGAGCC
80795940 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
80795968 AGCCTCGAGA
Statistics
Matches: 67, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
45 3 0.04
46 13 0.19
47 29 0.43
48 22 0.33
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGTATTGACGAGAGCC
Found at i:80796110 original size:142 final size:140
Alignment explanation
Indices: 80795891--80796197 Score: 354
Period size: 142 Copynumber: 2.2 Consensus size: 140
80795881 TTATGAGAGC
** * * *
80795891 CAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGAGCTAGTGTAAGACATGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGAGACGAAAGCCAGTGTAAGACATGTCT
* *
80795956 GGGACATGCATCAGCCTCGAG-ATAT-ACAAG-CTAGTGTAAGACTTGTCTGGGACATGGCGTCA
66 GGGACACGCATCAGCCTCG-GTATATGA-AAGTC-AGTGTAAGACTTGTCTGGGAAATGGCGTCA
80796018 GCTTGATGTGTGT
128 GCTTGATGTGTGT
* * * *
80796031 CAGTGTAAGACC-TGTTTGGGACATGGCATTGACACTGATAGATGAAAGCCAGTGTAAGACTTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACTG--AGACGAAAGCCAGTGTAAGACATGT
* *
80796095 TTGGGACACGACATCAGCCTCGGTATATGAAAGTCAGTGTAAGACTTGTCTGGGAAATGGCATC-
64 CTGGGACACG-CATCAGCCTCGGTATATGAAAGTCAGTGTAAGACTTGTCTGGGAAATGGCGTCA
* *
80796159 GACTTTAATGTGCTAGC
128 G-C-TTGATGTG-T-GT
80796176 CAGTGTAAGACCATGTCTGGGA
1 CAGTGTAAGACCATGTCTGGGA
80796198 TATAGCGTCG
Statistics
Matches: 140, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
139 20 0.14
140 12 0.09
141 31 0.22
142 46 0.33
143 9 0.06
144 1 0.01
145 13 0.09
146 8 0.06
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (140 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGAGACGAAAGCCAGTGTAAGACATGTCT
GGGACACGCATCAGCCTCGGTATATGAAAGTCAGTGTAAGACTTGTCTGGGAAATGGCGTCAGCT
TGATGTGTGT
Found at i:80799674 original size:51 final size:51
Alignment explanation
Indices: 80799569--80799676 Score: 126
Period size: 51 Copynumber: 2.1 Consensus size: 51
80799559 CCAAGAATTG
* * * * *
80799569 GTTCATATGAAATAACAGTTCTTACCAAATGACAGCTCATGCAAAGTAATA
1 GTTCATATGAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACA
* * * * *
80799620 GTTCATATGAAATATCAGTTCATATCGAATAACAATTCATTCAAAATAACA
1 GTTCATATGAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACA
80799671 GTTCAT
1 GTTCAT
80799677 GCTTCATCAT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.31
Consensus pattern (51 bp):
GTTCATATGAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACA
Found at i:80805592 original size:19 final size:20
Alignment explanation
Indices: 80805554--80805592 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
80805544 TCACCATTCT
*
80805554 ATTGTTATTAGGCATTGAATA
1 ATTGTTATTA-GCATGGAATA
80805575 ATTGTTATT-GCATGGAAT
1 ATTGTTATTAGCATGGAAT
80805593 GTGCGATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
21 9 0.53
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.44
Consensus pattern (20 bp):
ATTGTTATTAGCATGGAATA
Done.