Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 244 of 343
Found at i:80805778 original size:48 final size:48
Alignment explanation
Indices: 80805703--80806026 Score: 296
Period size: 48 Copynumber: 6.7 Consensus size: 48
80805693 TTATTTGTGG
*
80805703 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATATGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATATGA
* * ** * ***
80805751 GTTAGTGTAAGATCATGTTTGAAACATGGCATCGGCATTGTTATGA-GA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATAT-ATGA
* * ** * *
80805799 GCTAATGTAAGACCATGTCTATGACATGGCATCGACCTCAATATGTGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATATGA
* * * * ***
80805847 GCCAGTGTAAGACCACGTTTGGAACATGGCATCGGCATTGTTATGA-GA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATAT-ATGA
* * *
80805895 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTAA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATATGA
* * *
80805943 GAC-AGTGTAAGACCATGTTTGGGACCTGGCATCGGCACT-GATACATGAGA
1 G-CTAGTGTAAGACCATGTTTGGGACATGGCATCGGC-CTCAATATAT--GA
* *
80805993 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCG
80806027 ACATTTTACC
Statistics
Matches: 214, Mismatches: 53, Indels: 16
0.76 0.19 0.06
Matches are distributed among these distances:
48 178 0.83
49 5 0.02
50 31 0.14
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATATGA
Found at i:80805873 original size:96 final size:96
Alignment explanation
Indices: 80805703--80806028 Score: 472
Period size: 96 Copynumber: 3.4 Consensus size: 96
80805693 TTATTTGTGG
* * ** *
80805703 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATATGAGTTAGTGTAAGATCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAATATGTGAGACAGTGTAAGACCATG
*
80805768 TTTGAAACATGGCATCGGCATTGTTATGAGA
66 TTTGGAACATGGCATCGGCATTGTTATGAGA
* ** * *
80805799 GCTAATGTAAGACCATGTCTATGACATGGCATCGACCTCAATATGTGAGCCAGTGTAAGACCACG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAATATGTGAGACAGTGTAAGACCATG
80805864 TTTGGAACATGGCATCGGCATTGTTATGAGA
66 TTTGGAACATGGCATCGGCATTGTTATGAGA
* *
80805895 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTAAGACAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAATATGTGAGACAGTGTAAGACCATG
* * * *
80805960 TTTGGGACCTGGCATCGGCACTGATACATGAGA
66 TTTGGAACATGGCATCGGCATTG-T-TATGAGA
*
80805993 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC
80806029 ATTTTACCCT
Statistics
Matches: 205, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
96 164 0.80
97 1 0.00
98 40 0.20
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAATATGTGAGACAGTGTAAGACCATG
TTTGGAACATGGCATCGGCATTGTTATGAGA
Found at i:80809675 original size:13 final size:13
Alignment explanation
Indices: 80809657--80809681 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80809647 TACATAAAGA
80809657 AATTTTAACATAT
1 AATTTTAACATAT
80809670 AATTTTAACATA
1 AATTTTAACATA
80809682 CAAATATACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
AATTTTAACATAT
Found at i:80810019 original size:39 final size:40
Alignment explanation
Indices: 80809924--80810119 Score: 172
Period size: 39 Copynumber: 5.0 Consensus size: 40
80809914 ACTTGAAACC
** **
80809924 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGCGGGACCTTAAGTCCGGATAT
* * * * * *
80809963 AATACCAACTCGA-AGCCTGCGGGA-CTTTAGCCCGGACAT
1 AATTCCAGCAC-ATAGCCTGCGGGACCTTAAGTCCGGATAT
* * * *
80810002 ATTTCCAGCACGTAGCCTG-TGGATCTTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGGACCTTAAGTCCGGATAT
* *
80810041 AATTCCAACACATAGCCTGC-GGACCCTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGGACCTTAAGTCCGGATAT
*
80810080 AATTCCAGCACATAGCCTGC-GGACCCTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGGACCTTAAGTCCGGATAT
80810119 A
1 A
80810120 CATCACTGAA
Statistics
Matches: 130, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
38 16 0.12
39 114 0.88
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
AATTCCAGCACATAGCCTGCGGGACCTTAAGTCCGGATAT
Found at i:80810049 original size:78 final size:78
Alignment explanation
Indices: 80809956--80810119 Score: 190
Period size: 78 Copynumber: 2.1 Consensus size: 78
80809946 GAATTTAAAC
* * * * *
80809956 CCGG-TATAATACCAACTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGC
1 CCGGATATAATACCAACAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGC
* * *
80810018 CTGTGGATCTTAAGT
64 CTGCGGACCCTAAGT
* * *
80810033 CCGGATATAATTCCAACACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGGATATAATACCAACACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCT
80810098 GCGGACCCTAAGT
66 GCGGACCCTAAGT
80810111 CCGGATATA
1 CCGGATATA
80810120 CATCACTGAA
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
77 8 0.11
78 65 0.89
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (78 bp):
CCGGATATAATACCAACACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCT
GCGGACCCTAAGT
Found at i:80817920 original size:39 final size:39
Alignment explanation
Indices: 80817824--80818016 Score: 200
Period size: 39 Copynumber: 5.0 Consensus size: 39
80817814 ACTTGAAACC
** **
80817824 AATTACCAGCACA-AGCCTGCGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGCGGACCTTAAGTCCGGATAT
* * * * *
80817862 AATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACAT
1 AATTCCAGCAC-ATAGCCTGC-GGACCTTAAGTCCGGATAT
* *
80817901 ATTTCCAGCACGTAGCCTGCGGACCTTAAGTCC--ATAT
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATAT
*
80817938 AATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATAT
*
80817977 AATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATAT
80818016 A
1 A
80818017 CATCACTGAA
Statistics
Matches: 132, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
37 39 0.30
38 22 0.17
39 71 0.54
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (39 bp):
AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATAT
Found at i:80817939 original size:76 final size:76
Alignment explanation
Indices: 80817859--80818009 Score: 189
Period size: 76 Copynumber: 2.0 Consensus size: 76
80817849 TTAAACCCGG
* * * * *
80817859 TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTGCG
1 TATAATACCAGCAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCG
*
80817922 GACCTTAAGTCCA
64 GACCCTAAGTCCA
* * *
80817935 TATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
80818000 CCCTAAGTCC
66 CCCTAAGTCC
80818010 GGATATACAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
75 4 0.06
76 60 0.94
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (76 bp):
TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
CCCTAAGTCCA
Found at i:80837000 original size:30 final size:30
Alignment explanation
Indices: 80836966--80837026 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
80836956 TTCCCGAGCC
80836966 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
80836996 TAGGGGCAAAATTGTAATTTTGCTAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
80837026 T
1 T
80837027 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:80841861 original size:33 final size:33
Alignment explanation
Indices: 80841824--80841895 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
80841814 CAATCCCTCA
*
80841824 AACACACCGATACTCATAAGAGCTAATCCAACC
1 AACACACCAATACTCATAAGAGCTAATCCAACC
* * * * *
80841857 AACACACTAATGCTCATGAGAGTTAATTCAACC
1 AACACACCAATACTCATAAGAGCTAATCCAACC
80841890 AACACA
1 AACACA
80841896 TCAAATGGAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.43, C:0.29, G:0.10, T:0.18
Consensus pattern (33 bp):
AACACACCAATACTCATAAGAGCTAATCCAACC
Found at i:80849381 original size:27 final size:27
Alignment explanation
Indices: 80849351--80849490 Score: 162
Period size: 27 Copynumber: 5.2 Consensus size: 27
80849341 GTAACGAAGT
80849351 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
80849378 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
80849405 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
* **
80849432 CACCAG-GACAGATATATGTGGCAGATA
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
80849459 CATCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
80849486 CACCA
1 CACCA
80849491 AGACGCTTCC
Statistics
Matches: 95, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
26 10 0.11
27 81 0.85
28 4 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:80849423 original size:54 final size:54
Alignment explanation
Indices: 80849351--80849490 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 54
80849341 GTAACGAAGT
* *
80849351 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGA
* *
80849405 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGATA
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGA
*
80849459 CATCAGATCAGATAATTGTGGCATAGCCACCA
1 CACCAGATCAGATAATTGTGGCATAGCCACCA
80849491 AGACGCTTCC
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 75 0.94
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGA
Found at i:80849634 original size:75 final size:75
Alignment explanation
Indices: 80849511--80849662 Score: 277
Period size: 75 Copynumber: 2.0 Consensus size: 75
80849501 TCCATAATAT
* *
80849511 AACCCATGTCCCCATGCAATAGATATATAATCATGGCATACATCATACAGAATCAGATCGTCATG
1 AACCCATGTCCCCATGCAACAGATATATAATCATGGCATACATCATACAAAATCAGATCGTCATG
80849576 CTTTTCAGTC
66 CTTTTCAGTC
*
80849586 AACCCATGTCCCCATGCAACATATATATAATCATGGCATACATCATACAAAATCAGATCGTCATG
1 AACCCATGTCCCCATGCAACAGATATATAATCATGGCATACATCATACAAAATCAGATCGTCATG
80849651 CTTTTCAGTC
66 CTTTTCAGTC
80849661 AA
1 AA
80849663 AATTAACCCT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.28
Consensus pattern (75 bp):
AACCCATGTCCCCATGCAACAGATATATAATCATGGCATACATCATACAAAATCAGATCGTCATG
CTTTTCAGTC
Found at i:80849699 original size:26 final size:27
Alignment explanation
Indices: 80849670--80849734 Score: 87
Period size: 26 Copynumber: 2.4 Consensus size: 27
80849660 CAAAATTAAC
* *
80849670 CCTAGGGGTATAACGGTAATTTTGC-A
1 CCTAGGGGTATAACGATAATTTTCCAA
*
80849696 CCTAGAGGTATAACGATAATTTTCCATA
1 CCTAGGGGTATAACGATAATTTTCCA-A
80849724 CCTAGGGGTAT
1 CCTAGGGGTAT
80849735 TATAGTAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 22 0.67
28 11 0.33
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (27 bp):
CCTAGGGGTATAACGATAATTTTCCAA
Found at i:80851219 original size:26 final size:26
Alignment explanation
Indices: 80851188--80851269 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
80851178 TGAAATGCCC
*
80851188 ATCATGAAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
80851214 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
80851240 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
80851266 ATCA
1 ATCA
80851270 ATTTGTACCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:80858886 original size:35 final size:35
Alignment explanation
Indices: 80858840--80858907 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
80858830 TTTGGGTTTT
80858840 TTACTTATATAATATAAAATAAATAAATAAAAATA
1 TTACTTATATAATATAAAATAAATAAATAAAAATA
80858875 TTACTTATATAATATAAAATAAATAAATAAAAA
1 TTACTTATATAATATAAAATAAATAAATAAAAA
80858908 ATAAAAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (35 bp):
TTACTTATATAATATAAAATAAATAAATAAAAATA
Found at i:80871349 original size:20 final size:21
Alignment explanation
Indices: 80871309--80871349 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
80871299 ACTTGTATAA
*
80871309 CTATAATCAAACATTCAAAAT
1 CTATAATCAAACATCCAAAAT
*
80871330 CTATCATCAAACA-CCAAAAT
1 CTATAATCAAACATCCAAAAT
80871350 ACTCATGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (21 bp):
CTATAATCAAACATCCAAAAT
Found at i:80875635 original size:48 final size:48
Alignment explanation
Indices: 80875582--80875674 Score: 136
Period size: 48 Copynumber: 1.9 Consensus size: 48
80875572 AAAATAATTA
*
80875582 TATAAAAATAA-T-ATAAAATATGTAAAATTATTTAAAAATTATTAAGAT
1 TATAAAAATAATTAAAAAAATAT-TAAAATTA-TTAAAAATTATTAAGAT
*
80875630 TATAAAAATAATTAAAAAAATATTAAATTTATTAAAAATTATTAA
1 TATAAAAATAATTAAAAAAATATTAAAATTATTAAAAATTATTAA
80875675 AAAAAAGTCC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
48 25 0.61
49 8 0.20
50 8 0.20
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (48 bp):
TATAAAAATAATTAAAAAAATATTAAAATTATTAAAAATTATTAAGAT
Found at i:80875638 original size:29 final size:30
Alignment explanation
Indices: 80875605--80875679 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 30
80875595 TAAAATATGT
* *
80875605 AAAATTATTTAAAAATTATTAAGA-TTA-TA
1 AAAATTATTAAAAAAATATTAA-ATTTATTA
*
80875634 AAAATAATTAAAAAAATATTAAATTTATTA
1 AAAATTATTAAAAAAATATTAAATTTATTA
80875664 AAAATTATTAAAAAAA
1 AAAATTATTAAAAAAA
80875680 AGTCCCAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
28 1 0.03
29 22 0.55
30 17 0.43
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (30 bp):
AAAATTATTAAAAAAATATTAAATTTATTA
Found at i:80875662 original size:9 final size:9
Alignment explanation
Indices: 80875595--80875676 Score: 58
Period size: 9 Copynumber: 8.6 Consensus size: 9
80875585 AAAAATAATA
80875595 TAAAA-TAT
1 TAAAATTAT
80875603 GTAAAATTATT
1 -TAAAATTA-T
80875614 TAAAAATTAT
1 T-AAAATTAT
*
80875624 TAAGATTAT
1 TAAAATTAT
* *
80875633 AAAAATAAT
1 TAAAATTAT
*
80875642 TAAAAAAATAT
1 T--AAAATTAT
*
80875653 TAAATTTAT
1 TAAAATTAT
80875662 TAAAAATTAT
1 T-AAAATTAT
80875672 TAAAA
1 TAAAA
80875677 AAAAGTCCCA
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
9 29 0.51
10 13 0.23
11 15 0.26
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (9 bp):
TAAAATTAT
Found at i:80875678 original size:11 final size:10
Alignment explanation
Indices: 80875560--80875677 Score: 77
Period size: 11 Copynumber: 11.7 Consensus size: 10
80875550 TCATGACTTT
80875560 TTAAATAATTA
1 TTAAA-AATTA
*
80875571 TAAAATAATTA
1 TTAAA-AATTA
80875582 TATAAAAA-TA
1 T-TAAAAATTA
*
80875592 ATATAAAA-TA
1 TTA-AAAATTA
80875602 TGT-AAAATTA
1 T-TAAAAATTA
80875612 TTTAAAAATTA
1 -TTAAAAATTA
*
80875623 TT-AAGATTA
1 TTAAAAATTA
*
80875632 -TAAAAATAA
1 TTAAAAATTA
*
80875641 TTAAAAAAATA
1 TT-AAAAATTA
*
80875652 TT-AAATTTA
1 TTAAAAATTA
80875661 TTAAAAATTA
1 TTAAAAATTA
80875671 TTAAAAA
1 TTAAAAA
80875678 AAAGTCCCAA
Statistics
Matches: 85, Mismatches: 12, Indels: 21
0.72 0.10 0.18
Matches are distributed among these distances:
8 1 0.01
9 24 0.28
10 27 0.32
11 30 0.35
12 3 0.04
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:80875803 original size:10 final size:10
Alignment explanation
Indices: 80875750--80875842 Score: 55
Period size: 10 Copynumber: 9.2 Consensus size: 10
80875740 GGTTTTTAAT
*
80875750 AATTATTAAAC
1 AATTA-TAAAA
80875761 AATTATAAAA
1 AATTATAAAA
* **
80875771 GA-TATTTAA
1 AATTATAAAA
* * *
80875780 TATTATTAAT
1 AATTATAAAA
80875790 AATTATAAAA
1 AATTATAAAA
80875800 AATTATAAAAA
1 AATTAT-AAAA
80875811 AATT-TATAAA
1 AATTATA-AAA
* *
80875821 AAGTATTAAA
1 AATTATAAAA
*
80875831 AATAATAAAA
1 AATTATAAAA
80875841 AA
1 AA
80875843 GTAAAACATA
Statistics
Matches: 63, Mismatches: 15, Indels: 9
0.72 0.17 0.10
Matches are distributed among these distances:
9 7 0.11
10 42 0.67
11 14 0.22
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.34
Consensus pattern (10 bp):
AATTATAAAA
Found at i:80876115 original size:20 final size:20
Alignment explanation
Indices: 80876092--80876172 Score: 73
Period size: 20 Copynumber: 4.2 Consensus size: 20
80876082 TACTATGTTT
80876092 TTATAAATTTTAATAATTTA
1 TTATAAATTTTAATAATTTA
80876112 TTAT-AATTATTAATAATTTA
1 TTATAAATT-TTAATAATTTA
* *
80876132 --A-ATATTTTTATAATTTA
1 TTATAAATTTTAATAATTTA
*
80876149 CTTTATAAATTCTAATAA-TTA
1 --TTATAAATTTTAATAATTTA
80876170 TTA
1 TTA
80876173 AAACTATGTC
Statistics
Matches: 49, Mismatches: 5, Indels: 15
0.71 0.07 0.22
Matches are distributed among these distances:
17 10 0.20
18 4 0.08
19 7 0.14
20 15 0.31
21 4 0.08
22 9 0.18
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
TTATAAATTTTAATAATTTA
Found at i:80876293 original size:28 final size:28
Alignment explanation
Indices: 80876260--80876345 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 28
80876250 TTTGGACGTG
80876260 AATTTTAATAATTATTAAATAATTTTAT
1 AATTTTAATAATTATTAAATAATTTTAT
* *
80876288 CATTTTTAAATAA--ACTT-AATATTTTTAT
1 -AATTTT-AATAATTA-TTAAATAATTTTAT
80876316 AATTATTAATCAATT-TTAAATAATTTTAT
1 AATT-TTAAT-AATTATTAAATAATTTTAT
80876345 A
1 A
80876346 TATATTTTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
27 6 0.13
28 17 0.37
29 18 0.39
30 5 0.11
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.52
Consensus pattern (28 bp):
AATTTTAATAATTATTAAATAATTTTAT
Found at i:80876298 original size:19 final size:19
Alignment explanation
Indices: 80876260--80876344 Score: 68
Period size: 19 Copynumber: 4.4 Consensus size: 19
80876250 TTTGGACGTG
* *
80876260 AATTTTAATAATTATTAAAT
1 AATTTT-ATCATTTTTAAAT
80876280 AATTTTATCATTTTTAAAT
1 AATTTTATCATTTTTAAAT
* *
80876299 AAACTTAAT-ATTTTT--AT
1 -AATTTTATCATTTTTAAAT
*
80876316 AATTATTAATCAATTTTAAAT
1 AATT-TT-ATCATTTTTAAAT
80876337 AATTTTAT
1 AATTTTAT
80876345 ATATATTTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
16 3 0.06
17 3 0.06
18 2 0.04
19 24 0.46
20 14 0.27
21 6 0.12
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (19 bp):
AATTTTATCATTTTTAAAT
Found at i:80876363 original size:21 final size:21
Alignment explanation
Indices: 80876335--80876381 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
80876325 TCAATTTTAA
80876335 ATAA-TTTTATATATATT-TTT
1 ATAATTTTTATATA-ATTCTTT
* *
80876355 GTAATTTTTTTATAATTCTTT
1 ATAATTTTTATATAATTCTTT
80876376 ATAATT
1 ATAATT
80876382 ATCTAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
ATAATTTTTATATAATTCTTT
Found at i:80877511 original size:25 final size:25
Alignment explanation
Indices: 80877449--80877500 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
80877439 AAAAAGTCTA
*
80877449 AAGTATTAGTTTTCACATTTTAAGG
1 AAGTATTAATTTTCACATTTTAAGG
80877474 AAGTATTAATTTTCACATTTTAAGG
1 AAGTATTAATTTTCACATTTTAAGG
80877499 AA
1 AA
80877501 TTCTAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.42
Consensus pattern (25 bp):
AAGTATTAATTTTCACATTTTAAGG
Found at i:80878226 original size:21 final size:20
Alignment explanation
Indices: 80878200--80878259 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
80878190 TTTAGACAAT
80878200 TATAAAAATTATAAAAAAACA
1 TATAAAAATTATAAAAAAA-A
* *
80878221 TATAAAAATAATTTAAAAATAA
1 TATAAAAAT--TATAAAAAAAA
*
80878243 T-TAAGAATTATAAAAAA
1 TATAAAAATTATAAAAAA
80878260 TTATTAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 7 0.22
21 15 0.47
22 2 0.06
23 8 0.25
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (20 bp):
TATAAAAATTATAAAAAAAA
Found at i:80878260 original size:20 final size:19
Alignment explanation
Indices: 80878204--80878271 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 19
80878194 GACAATTATA
80878204 AAAATTATAAAAAA-ACATAT
1 AAAATTATAAAAAATA-AT-T
* *
80878224 AAAAATAATTTAAAAATAATT
1 -AAAATTA-TAAAAAATAATT
*
80878245 AAGAATTATAAAAAATTATT
1 AA-AATTATAAAAAATAATT
80878265 AAAATTA
1 AAAATTA
80878272 AAATTTATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
19 5 0.13
20 14 0.36
21 11 0.28
22 8 0.21
23 1 0.03
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (19 bp):
AAAATTATAAAAAATAATT
Found at i:80884496 original size:76 final size:76
Alignment explanation
Indices: 80884366--80884518 Score: 288
Period size: 76 Copynumber: 2.0 Consensus size: 76
80884356 GAAAAGACAC
* *
80884366 AAAGGATACGAATTCATAATATTTTTTTAGATGATACAACCAATAGCTTTGTGTCTCTTTTGTAC
1 AAAGGATACGAATTCATAATATTTTTTTAGACGATACAACCAATAGCTTCGTGTCTCTTTTGTAC
80884431 TAGTATTAATT
66 TAGTATTAATT
80884442 AAAGGATACGAATTCATAATATTTTTTTAGACGATACAACCAATAGCTTCGTGTCTCTTTTGTAC
1 AAAGGATACGAATTCATAATATTTTTTTAGACGATACAACCAATAGCTTCGTGTCTCTTTTGTAC
80884507 TAGTATTAATT
66 TAGTATTAATT
80884518 A
1 A
80884519 GTTCCCAATA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (76 bp):
AAAGGATACGAATTCATAATATTTTTTTAGACGATACAACCAATAGCTTCGTGTCTCTTTTGTAC
TAGTATTAATT
Found at i:80886417 original size:14 final size:14
Alignment explanation
Indices: 80886398--80886445 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
80886388 GTTTGTTAAC
80886398 TATTGTAAGCTACA
1 TATTGTAAGCTACA
** *
80886412 TATTGTTTGTTA-A
1 TATTGTAAGCTACA
80886425 CTATTGTAAGCTACA
1 -TATTGTAAGCTACA
80886440 TATTGT
1 TATTGT
80886446 TGTATTCAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
13 1 0.04
14 24 0.92
15 1 0.04
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.46
Consensus pattern (14 bp):
TATTGTAAGCTACA
Found at i:80886420 original size:28 final size:28
Alignment explanation
Indices: 80886388--80886446 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
80886378 AATTTGAAAG
80886388 GTTTGTTAACTATTGTAAGCTACATATT
1 GTTTGTTAACTATTGTAAGCTACATATT
80886416 GTTTGTTAACTATTGTAAGCTACATATT
1 GTTTGTTAACTATTGTAAGCTACATATT
80886444 GTT
1 GTT
80886447 GTATTCAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.47
Consensus pattern (28 bp):
GTTTGTTAACTATTGTAAGCTACATATT
Found at i:80891319 original size:20 final size:21
Alignment explanation
Indices: 80891296--80891342 Score: 51
Period size: 23 Copynumber: 2.2 Consensus size: 21
80891286 TTATAATTAT
*
80891296 TAATAATTT-TAATTTTTTTA
1 TAATAATTTATAATTTTTTAA
*
80891316 TAATTTATTTTATAATTTTTTAA
1 TAA--TAATTTATAATTTTTTAA
80891339 TAAT
1 TAAT
80891343 TATTAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
20 3 0.14
21 1 0.05
22 5 0.23
23 13 0.59
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
TAATAATTTATAATTTTTTAA
Found at i:80891328 original size:12 final size:11
Alignment explanation
Indices: 80891305--80891343 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
80891295 TTAATAATTT
80891305 TAATTTTTTTA
1 TAATTTTTTTA
80891316 TAATTTATTTTA
1 TAATTT-TTTTA
*
80891328 TAATTTTTTAA
1 TAATTTTTTTA
80891339 TAATT
1 TAATT
80891344 ATTAAAAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 15 0.58
12 11 0.42
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TAATTTTTTTA
Found at i:80894017 original size:14 final size:16
Alignment explanation
Indices: 80894000--80894036 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
80893990 ATTTCTTAAA
80894000 ATTAA-ATAAAA-TAT
1 ATTAATATAAAAGTAT
80894014 ATTAAATATAAAAGTAT
1 ATT-AATATAAAAGTAT
80894031 ATTAAT
1 ATTAAT
80894037 TTAGTAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 3 0.15
15 2 0.10
16 9 0.45
17 6 0.30
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
ATTAATATAAAAGTAT
Found at i:80902902 original size:9 final size:9
Alignment explanation
Indices: 80902888--80902926 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
80902878 ATAAGTATAA
80902888 AATTAACCG
1 AATTAACCG
80902897 AATTAACCG
1 AATTAACCG
* *
80902906 AATTACCCA
1 AATTAACCG
*
80902915 AATTAACAG
1 AATTAACCG
80902924 AAT
1 AAT
80902927 CAACTTTCTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.21, G:0.08, T:0.23
Consensus pattern (9 bp):
AATTAACCG
Found at i:80903467 original size:17 final size:17
Alignment explanation
Indices: 80903445--80903505 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
80903435 ATTGAATCAC
80903445 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
80903462 TACATAAGCCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
80903482 TACATAATTAAAAACTT
1 TACATAATTAAAAACAT
80903499 TACATAA
1 TACATAA
80903506 GTCTTGAAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 19 0.59
20 13 0.41
ACGTcount: A:0.49, C:0.16, G:0.03, T:0.31
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:80903486 original size:37 final size:37
Alignment explanation
Indices: 80903436--80903506 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
80903426 TGATTAAATA
80903436 TTGAATCACTACATAATTAAAAACATTACATAAGCCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGCCT
*
80903473 TTGAATCACTACATAATTAAAAACTTTACATAAG
1 TTGAATCACTACATAATTAAAAACATTACATAAG
80903507 TCTTGAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGCCT
Found at i:80907658 original size:23 final size:23
Alignment explanation
Indices: 80907628--80907677 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
80907618 CTATATGGGA
*
80907628 TTACAAAATGAGTTTTCGTAAAC
1 TTACAAAATGAGTTTTCATAAAC
80907651 TTACAAAATGAGTTTTCATAAAC
1 TTACAAAATGAGTTTTCATAAAC
80907674 TTAC
1 TTAC
80907678 CCTTTTGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (23 bp):
TTACAAAATGAGTTTTCATAAAC
Found at i:80910525 original size:25 final size:22
Alignment explanation
Indices: 80910477--80910527 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 22
80910467 ATATGTATGA
*
80910477 AATA-TTAATATATGAATACTT
1 AATATTTAATATATGAATAATT
80910498 AATATTTAAGTATATGATATAATAT
1 AATATTTAA-TATATGA-ATAAT-T
80910523 AATAT
1 AATAT
80910528 GTTATTACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 4 0.16
22 4 0.16
23 7 0.28
24 4 0.16
25 6 0.24
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (22 bp):
AATATTTAATATATGAATAATT
Found at i:80910566 original size:11 final size:11
Alignment explanation
Indices: 80910536--80910573 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
80910526 ATGTTATTAC
**
80910536 AATAATAATTA
1 AATAATAAAGA
80910547 AATAATAAAGA
1 AATAATAAAGA
80910558 AATAATAAAGA
1 AATAATAAAGA
80910569 AATAA
1 AATAA
80910574 AAATAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (11 bp):
AATAATAAAGA
Found at i:80912980 original size:181 final size:181
Alignment explanation
Indices: 80912676--80913038 Score: 672
Period size: 181 Copynumber: 2.0 Consensus size: 181
80912666 TGGCTGGCCG
80912676 TGTGATCTAAGTCAGAAATTTACACGGGGCTGGACACGGCCTGTGGCACAGGCGTGTCTATGGTC
1 TGTGATCTAAGTCAGAAATTTACACGGGGCTGGACACGGCCTGTGGCACAGGCGTGTCTATGGTC
80912741 ACACGAGCGTGTCCCTTGACCACATGAGCATGTTTGCCCTGCATCTAGGAAAATTTTTGAAATTT
66 ACACGAGCGTGTCCCTTGACCACATGAGCATGTTTGCCCTGCATCTAGGAAAATTTTTGAAATTT
*
80912806 CACAAAAAATTTCTGAAGTACCCGATTTAGTCCCTGTTTGTTTCTAACATA
131 CACAAAAAATTTCTGAAGTACCCGATTTAGTCCCTATTTGTTTCTAACATA
80912857 TGTGATCTAAGTCAGAAATTTACACGGGGCTGGACACGGCCTGTGGCACAGGCGTGTCTATGGTC
1 TGTGATCTAAGTCAGAAATTTACACGGGGCTGGACACGGCCTGTGGCACAGGCGTGTCTATGGTC
* *
80912922 ATACGAGCGTGTCCCTTGACCACATGAGCATGTTTGCCTTGCATCTAGGAAAATTTTTGAAATTT
66 ACACGAGCGTGTCCCTTGACCACATGAGCATGTTTGCCCTGCATCTAGGAAAATTTTTGAAATTT
* * *
80912987 CACGAAAAATTTTTGAAGTACCCGATTTATTCCCTATTTGTTTCTAACATA
131 CACAAAAAATTTCTGAAGTACCCGATTTAGTCCCTATTTGTTTCTAACATA
80913038 T
1 T
80913039 ATTTTGGGCC
Statistics
Matches: 176, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
181 176 1.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (181 bp):
TGTGATCTAAGTCAGAAATTTACACGGGGCTGGACACGGCCTGTGGCACAGGCGTGTCTATGGTC
ACACGAGCGTGTCCCTTGACCACATGAGCATGTTTGCCCTGCATCTAGGAAAATTTTTGAAATTT
CACAAAAAATTTCTGAAGTACCCGATTTAGTCCCTATTTGTTTCTAACATA
Found at i:80916991 original size:18 final size:18
Alignment explanation
Indices: 80916968--80917003 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
80916958 TTAGGGTCTT
*
80916968 GACATATGTATGACACAG
1 GACATATATATGACACAG
*
80916986 GACATATATATGGCACAG
1 GACATATATATGACACAG
80917004 ATCCCATCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (18 bp):
GACATATATATGACACAG
Found at i:80917727 original size:27 final size:27
Alignment explanation
Indices: 80917675--80917727 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 27
80917665 TTAATTTAGT
* *
80917675 TTTAATAAAATCTATATTTCATGTATA
1 TTTAATAAAATCCATAATTCATGTATA
*
80917702 TTTAATTATAATCCATAATTCA-GTAT
1 TTTAA-TAAAATCCATAATTCATGTAT
80917728 TTAAAAAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (27 bp):
TTTAATAAAATCCATAATTCATGTATA
Found at i:80918247 original size:18 final size:18
Alignment explanation
Indices: 80918221--80918256 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
80918211 CTTTACACCA
*
80918221 CATTATGGATGAACCACT
1 CATTATGGATAAACCACT
*
80918239 CATTGTGGATAAACCACT
1 CATTATGGATAAACCACT
80918257 AGTAATAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (18 bp):
CATTATGGATAAACCACT
Found at i:80918605 original size:34 final size:34
Alignment explanation
Indices: 80918509--80918605 Score: 99
Period size: 34 Copynumber: 2.8 Consensus size: 34
80918499 GTCAAGCTCA
* ** *
80918509 AACAGATCAATACAGTAGCATTTAATTATGTTTTT
1 AACAGATCAATACAATAGCAAATAA-TATGTTTAT
* *
80918544 AACAGAACAATACGATAGC-AATCAATATGTTTAT
1 AACAGATCAATACAATAGCAAAT-AATATGTTTAT
80918578 AACA-ATTCAATACAATAGCAAATAATAT
1 AACAGA-TCAATACAATAGCAAATAATAT
80918606 ACTTTTAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
33 1 0.02
34 29 0.57
35 21 0.41
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (34 bp):
AACAGATCAATACAATAGCAAATAATATGTTTAT
Found at i:80918939 original size:28 final size:28
Alignment explanation
Indices: 80918876--80918947 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
80918866 AATATTTTAA
**
80918876 GTAAAATTGTAAAATTTGTAAAGTAGGG
1 GTAAAATTGTAAAATTTGTAAAACAGGG
* *
80918904 GACAAAATTGTAAAATTT-TAAAAACATGG
1 G-TAAAATTGTAAAATTTGT-AAAACAGGG
80918933 GTAAAATTGTAAAAT
1 GTAAAATTGTAAAAT
80918948 CTAAAAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 15 0.41
29 22 0.59
ACGTcount: A:0.49, C:0.03, G:0.18, T:0.31
Consensus pattern (28 bp):
GTAAAATTGTAAAATTTGTAAAACAGGG
Found at i:80918966 original size:28 final size:28
Alignment explanation
Indices: 80918878--80918986 Score: 101
Period size: 28 Copynumber: 3.8 Consensus size: 28
80918868 TATTTTAAGT
** *
80918878 AAAATTGTAAAATTTGTAAAGTAGGGGAC
1 AAAATTGTAAAATTTAAAAAATAGGGG-C
* * * *
80918907 AAAATTGTAAAATTTTAAAAACATGGGT
1 AAAATTGTAAAATTTAAAAAATAGGGGC
*
80918935 AAAATTGTAAAATCTAAAAAATAGGGGC
1 AAAATTGTAAAATTTAAAAAATAGGGGC
* * *
80918963 AAAACTATAAATTTTGAAAAAATA
1 AAAATTGTAAAATTT-AAAAAATA
80918987 AGGAACACAT
Statistics
Matches: 64, Mismatches: 15, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
28 34 0.53
29 30 0.47
ACGTcount: A:0.52, C:0.05, G:0.16, T:0.28
Consensus pattern (28 bp):
AAAATTGTAAAATTTAAAAAATAGGGGC
Found at i:80918984 original size:57 final size:57
Alignment explanation
Indices: 80918876--80918983 Score: 139
Period size: 57 Copynumber: 1.9 Consensus size: 57
80918866 AATATTTTAA
* ** * * *
80918876 GTAAAATTGTAAAATTTGTAAAGTAGGGGACAAAATTGTAAAATTTTAAAAACATGG
1 GTAAAATTGTAAAATCTAAAAAATAGGGGACAAAACTATAAAATTTTAAAAACATGG
80918933 GTAAAATTGTAAAATCTAAAAAATAGGGG-CAAAACTAT-AAATTTTGAAAAA
1 GTAAAATTGTAAAATCTAAAAAATAGGGGACAAAACTATAAAATTTT-AAAAA
80918984 ATAAGGAACA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
55 7 0.16
56 12 0.27
57 25 0.57
ACGTcount: A:0.51, C:0.05, G:0.17, T:0.28
Consensus pattern (57 bp):
GTAAAATTGTAAAATCTAAAAAATAGGGGACAAAACTATAAAATTTTAAAAACATGG
Found at i:80921370 original size:21 final size:22
Alignment explanation
Indices: 80921330--80921380 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
80921320 TGTATATACG
* *
80921330 TATATTTTATGTACATTATGTA
1 TATATTTTATATACATTATGCA
* *
80921352 TATATTTTA-ATATATTATGCG
1 TATATTTTATATACATTATGCA
80921373 TATATTTT
1 TATATTTT
80921381 GTTTTGTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.31, C:0.04, G:0.08, T:0.57
Consensus pattern (22 bp):
TATATTTTATATACATTATGCA
Found at i:80921989 original size:20 final size:23
Alignment explanation
Indices: 80921955--80921995 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
80921945 TACTAACGTA
80921955 TATATATACTATGTA-ATTTTAT
1 TATATATACTATGTACATTTTAT
80921977 TATAT-TACT-TGTACATTTT
1 TATATATACTATGTACATTTT
80921996 TATATACCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (23 bp):
TATATATACTATGTACATTTTAT
Found at i:80922001 original size:21 final size:21
Alignment explanation
Indices: 80921953--80922001 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
80921943 ATTACTAACG
80921953 TATATATATACTATGTAATTT
1 TATATATATACTATGTAATTT
80921974 TAT-TATATTACT-TGTACATTT
1 TATATATA-TACTATGTA-ATTT
80921995 T-TATATA
1 TATATATA
80922002 CCATGCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (21 bp):
TATATATATACTATGTAATTT
Found at i:80923769 original size:19 final size:20
Alignment explanation
Indices: 80923745--80923787 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
80923735 TCAATTAAAT
*
80923745 AATATTTTTA-GTTATTTTA
1 AATATTTTTATATTATTTTA
*
80923764 AATATTTTTATATTATTTTC
1 AATATTTTTATATTATTTTA
80923784 AATA
1 AATA
80923788 CAAATTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
AATATTTTTATATTATTTTA
Found at i:80924407 original size:10 final size:10
Alignment explanation
Indices: 80924318--80924485 Score: 51
Period size: 10 Copynumber: 16.6 Consensus size: 10
80924308 TCAAGAAACA
80924318 ATAATTTTTT
1 ATAATTTTTT
* *
80924328 TTAAATTTTTAA
1 AT-AATTTTT-T
80924340 ATAATTTTTT
1 ATAATTTTTT
80924350 -TAAATTCTTTTT
1 AT-AA-T-TTTTT
* *
80924362 ACAATATTTT
1 ATAATTTTTT
* * *
80924372 ACAATTTCTA
1 ATAATTTTTT
*
80924382 ATAA-TTTTG
1 ATAATTTTTT
80924391 AT-A-TTTTT
1 ATAATTTTTT
80924399 ATAATTTTTT
1 ATAATTTTTT
**
80924409 ACCATTTTTT
1 ATAATTTTTT
* * *
80924419 -TAAATTCTA
1 ATAATTTTTT
* *
80924428 ACAAATTTTAT
1 A-TAATTTTTT
80924439 ATATATTTTTT
1 ATA-ATTTTTT
* *
80924450 AAAATTTGATT
1 ATAATTT-TTT
80924461 AT-ATTTTTT
1 ATAATTTTTT
* *
80924470 TTATTTTTTT
1 ATAATTTTTT
80924480 ATAATT
1 ATAATT
80924486 ATATATATTT
Statistics
Matches: 110, Mismatches: 35, Indels: 26
0.64 0.20 0.15
Matches are distributed among these distances:
8 7 0.06
9 14 0.13
10 49 0.45
11 32 0.29
12 8 0.07
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:80924472 original size:22 final size:21
Alignment explanation
Indices: 80924430--80924469 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
80924420 AAATTCTAAC
*
80924430 AAATTTTATATATATTTTTTA
1 AAATTTGATATATATTTTTTA
80924451 AAATTTGAT-TATATTTTTT
1 AAATTTGATATATATTTTTT
80924470 TTATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
AAATTTGATATATATTTTTTA
Found at i:80926110 original size:5 final size:5
Alignment explanation
Indices: 80926100--80926125 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
80926090 AGACAGCCCC
80926100 CTCTT CTCTT CTCTT CTCTT CTCTT C
1 CTCTT CTCTT CTCTT CTCTT CTCTT C
80926126 GCTTTAGCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (5 bp):
CTCTT
Found at i:80934663 original size:28 final size:28
Alignment explanation
Indices: 80934622--80934776 Score: 165
Period size: 28 Copynumber: 5.6 Consensus size: 28
80934612 AAAAATTTTC
80934622 TCGCACACTTAGTGCTCAATAACCGATT
1 TCGCACACTTAGTGCTCAATAACCGATT
* * *
80934650 TCACACACTTAGTGCTCGGAA-ATCCAATT
1 TCGCACACTTAGTGCTC--AATAACCGATT
* * * * *
80934679 T-GCACACTTAATGTTTAA-AACCAACT
1 TCGCACACTTAGTGCTCAATAACCGATT
* *
80934705 T-GCACACTCAGTGCTCAATGACCGATT
1 TCGCACACTTAGTGCTCAATAACCGATT
*
80934732 TCGCACACTTAGTGCTCAATGACCGATT
1 TCGCACACTTAGTGCTCAATAACCGATT
80934760 TCGCACACTTAGTGCTC
1 TCGCACACTTAGTGCTC
80934777 GGTATCAAAT
Statistics
Matches: 106, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 22 0.21
27 6 0.06
28 69 0.65
29 7 0.07
30 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCAATAACCGATT
Found at i:80946917 original size:43 final size:42
Alignment explanation
Indices: 80946846--80946941 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 42
80946836 GTAGTCAAAT
*
80946846 ATCGATGCCATTGTCCCAGACAAAGTCTTACACG-TAATCTCTA
1 ATCGATGCCAGTGTCCCAGACAAAGTCTTACACGAT-ATCTC-A
* * ** *
80946889 ATCGATGCCAGTGTCCTAGATACGGTCTTACATGATATCTCA
1 ATCGATGCCAGTGTCCCAGACAAAGTCTTACACGATATCTCA
80946931 AGTCGATGCCA
1 A-TCGATGCCA
80946942 ACGTTCCAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 2 0.04
43 42 0.93
44 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (42 bp):
ATCGATGCCAGTGTCCCAGACAAAGTCTTACACGATATCTCA
Found at i:80949971 original size:23 final size:23
Alignment explanation
Indices: 80949945--80949994 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
80949935 CAGTCTTTTC
80949945 AAAGAAATTTTTTCTTCCCTTTA
1 AAAGAAATTTTTTCTTCCCTTTA
80949968 AAAGAAATTTTTTCTTCCCTTTA
1 AAAGAAATTTTTTCTTCCCTTTA
80949991 AAAG
1 AAAG
80949995 GATAACCTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.44
Consensus pattern (23 bp):
AAAGAAATTTTTTCTTCCCTTTA
Found at i:80951051 original size:18 final size:18
Alignment explanation
Indices: 80951028--80951064 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
80951018 CATGCAAATG
80951028 TATAAAAACAAAAAATAA
1 TATAAAAACAAAAAATAA
* *
80951046 TATAAAAATAACAAATAA
1 TATAAAAACAAAAAATAA
80951064 T
1 T
80951065 TTACAAGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (18 bp):
TATAAAAACAAAAAATAA
Found at i:80951452 original size:11 final size:12
Alignment explanation
Indices: 80951431--80951482 Score: 58
Period size: 11 Copynumber: 4.6 Consensus size: 12
80951421 ATAAATAGTT
*
80951431 TATAATAAAATGA
1 TATAAT-AAATAA
80951444 TAT-ATAAATAA
1 TATAATAAATAA
80951455 TATAATAAA-AA
1 TATAATAAATAA
80951466 -ATAA-AAATAA
1 TATAATAAATAA
80951476 TATAATA
1 TATAATA
80951483 TGTAATAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
9 3 0.09
10 6 0.18
11 14 0.41
12 8 0.24
13 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (12 bp):
TATAATAAATAA
Found at i:80951473 original size:21 final size:23
Alignment explanation
Indices: 80951431--80951482 Score: 72
Period size: 21 Copynumber: 2.3 Consensus size: 23
80951421 ATAAATAGTT
*
80951431 TATAATAAAATGATATATAAATAA
1 TATAATAAAA-GATATAAAAATAA
80951455 TATAATAAAA-A-ATAAAAATAA
1 TATAATAAAAGATATAAAAATAA
80951476 TATAATA
1 TATAATA
80951483 TGTAATAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 16 0.59
22 1 0.04
24 10 0.37
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (23 bp):
TATAATAAAAGATATAAAAATAA
Found at i:80952766 original size:15 final size:16
Alignment explanation
Indices: 80952746--80952775 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80952736 TGTAAAGGAC
80952746 TTTTTA-TTATTTTTG
1 TTTTTATTTATTTTTG
80952761 TTTTTATTTATTTTT
1 TTTTTATTTATTTTT
80952776 CTATTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (16 bp):
TTTTTATTTATTTTTG
Found at i:80953175 original size:44 final size:44
Alignment explanation
Indices: 80953114--80953859 Score: 983
Period size: 44 Copynumber: 17.0 Consensus size: 44
80953104 CAAATGTCTG
* * *
80953114 ATCTGCTATCTTCGATCTGCTCTTTGTCAATACAGAGACGTCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* * * * *
80953158 ATCTGCTATCCTGGATCTGCTCTCTATCAATATAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* *
80953202 ATCTGCTATAC-TCGATCTG-TTTCTGTCAATACAGAGACGCCAA
1 ATCTGTTAT-CTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* * * * *
80953245 ATCTGCTATCCTCGATCTGCTTTCTGTCAATACAGAAATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* * *
80953289 ATCTGTCATCTTTGATCTGCTCTCTGTCAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
*
80953333 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* * *
80953377 ATCTGTTATCTTCGATCTGTTCTCTGACAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
*
80953421 ATCTATTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* * *
80953465 ATCTGTTATCTTCGAGCTACTCTCTGACAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* * * *
80953509 ATCTGTTATATTCGATCTGCTCTCTGACAATACAAATACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* *
80953553 ATCTGTTATCTTCGATCTGCTCTCTGTTAGTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* * *
80953597 ATCTGTTATCTTCGATCTGTTCTCTGACAATACAGAGACCCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* * *
80953641 ATATGTTATCTTCGATCTGCTCTCTGACAATACAGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
*
80953685 ATCTGTTATCTTCGATTTGCTCTCTGTCAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* * *
80953729 ATCTGTTATCTTCAATCTGCTCTCTGACAATACAAAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* *** *
80953773 ATCTGTTATCTTCAATCTGCTCTCTAAAAATACAAAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
* * ** * * *
80953817 ATCAGCTATCTTTAATCTGCTCTTTATCAATACAGAGATGCCA
1 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCA
80953860 GATTTGTCAC
Statistics
Matches: 630, Mismatches: 69, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
42 1 0.00
43 38 0.06
44 590 0.94
45 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (44 bp):
ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA
Found at i:80962245 original size:40 final size:40
Alignment explanation
Indices: 80962208--80962428 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
80962198 GCTACTCGTT
* *
80962208 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
80962248 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
80962288 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
80962328 CAAATGCCTTC-GG-CTTAGCCCGGA-TTAGT-ACTCG-A
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
80962363 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
80962404 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
80962429 CATCATTCAA
Statistics
Matches: 165, Mismatches: 8, Indels: 16
0.87 0.04 0.08
Matches are distributed among these distances:
35 14 0.08
36 5 0.03
37 15 0.09
38 13 0.08
39 4 0.02
40 104 0.63
41 10 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:80970355 original size:39 final size:40
Alignment explanation
Indices: 80970200--80970422 Score: 294
Period size: 40 Copynumber: 5.7 Consensus size: 40
80970190 GCTACTCGTT
*
80970200 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
80970240 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
80970280 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
80970320 CAAATGCCTTC-GGATTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
80970359 C-AATGCCTTC-GGATCTTAGTCCGGATATGGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
80970398 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80970423 CATCATTCAA
Statistics
Matches: 166, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
38 12 0.07
39 61 0.37
40 91 0.55
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:80976712 original size:18 final size:18
Alignment explanation
Indices: 80976689--80976725 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
80976679 CATGCAAACG
80976689 TATAAAAACAAAAAATAA
1 TATAAAAACAAAAAATAA
* *
80976707 TATAAAAATAACAAATAA
1 TATAAAAACAAAAAATAA
80976725 T
1 T
80976726 TTACGAGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (18 bp):
TATAAAAACAAAAAATAA
Found at i:80977112 original size:11 final size:12
Alignment explanation
Indices: 80977091--80977142 Score: 58
Period size: 11 Copynumber: 4.6 Consensus size: 12
80977081 ATAAATAGTT
*
80977091 TATAATAAAATGA
1 TATAAT-AAATAA
80977104 TAT-ATAAATAA
1 TATAATAAATAA
80977115 TATAATAAA-AA
1 TATAATAAATAA
80977126 -ATAA-AAATAA
1 TATAATAAATAA
80977136 TATAATA
1 TATAATA
80977143 TGTAATAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
9 3 0.09
10 6 0.18
11 14 0.41
12 8 0.24
13 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (12 bp):
TATAATAAATAA
Found at i:80977133 original size:21 final size:23
Alignment explanation
Indices: 80977091--80977142 Score: 72
Period size: 21 Copynumber: 2.3 Consensus size: 23
80977081 ATAAATAGTT
*
80977091 TATAATAAAATGATATATAAATAA
1 TATAATAAAA-GATATAAAAATAA
80977115 TATAATAAAA-A-ATAAAAATAA
1 TATAATAAAAGATATAAAAATAA
80977136 TATAATA
1 TATAATA
80977143 TGTAATAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 16 0.59
22 1 0.04
24 10 0.37
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (23 bp):
TATAATAAAAGATATAAAAATAA
Found at i:80978412 original size:15 final size:16
Alignment explanation
Indices: 80978392--80978421 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80978382 TGTAAAGGAC
80978392 TTTTTA-TTATTTTTG
1 TTTTTATTTATTTTTG
80978407 TTTTTATTTATTTTT
1 TTTTTATTTATTTTT
80978422 ATGTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (16 bp):
TTTTTATTTATTTTTG
Found at i:80978418 original size:19 final size:18
Alignment explanation
Indices: 80978392--80978429 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
80978382 TGTAAAGGAC
80978392 TTTTTA-TTA-TTTT-TG
1 TTTTTATTTATTTTTATG
80978407 TTTTTATTTATTTTTATG
1 TTTTTATTTATTTTTATG
80978425 TTTTT
1 TTTTT
80978430 TTCTTTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 6 0.30
16 3 0.15
17 4 0.20
18 7 0.35
ACGTcount: A:0.13, C:0.00, G:0.05, T:0.82
Consensus pattern (18 bp):
TTTTTATTTATTTTTATG
Found at i:80981788 original size:43 final size:43
Alignment explanation
Indices: 80981709--80981825 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
80981699 TAAGCTCGTA
* **
80981709 CAATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAA-ATAT
1 CAATGCCATTGTCCCAGACAG-GGTCTTACACATAATCAATA-AT
**
80981752 CAATGCCATTGTCCCAGACAGGGTCTTACACATAATCTCTAAT
1 CAATGCCATTGTCCCAGACAGGGTCTTACACATAATCAATAAT
* *
80981795 CGATGCCAGTT-TCCCAGACACGGTCTTACAC
1 CAATGCCA-TTGTCCCAGACAGGGTCTTACAC
80981826 GATATCTCAA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
43 60 0.94
44 4 0.06
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
CAATGCCATTGTCCCAGACAGGGTCTTACACATAATCAATAAT
Found at i:80981833 original size:43 final size:42
Alignment explanation
Indices: 80981754--80981874 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 42
80981744 TCAAATATCA
*
80981754 ATGCCATTGTCCCAGACAGGGTCTTACAC-ATAATCTCTAA-TCG
1 ATGCCATT-TCCCAGACACGGTCTTACACGAT-ATCTC-AAGTCG
80981797 ATGCCAGTTTCCCAGACACGGTCTTACACGATATCTCAAGTCG
1 ATGCCA-TTTCCCAGACACGGTCTTACACGATATCTCAAGTCG
* * ** *
80981840 ATGCCAATATCCCAGGCGTGGTCTGACACGATATC
1 ATGCC-ATTTCCCAGACACGGTCTTACACGATATC
80981875 ACATATCGGA
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
42 2 0.03
43 61 0.90
44 5 0.07
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (42 bp):
ATGCCATTTCCCAGACACGGTCTTACACGATATCTCAAGTCG
Found at i:80984389 original size:42 final size:42
Alignment explanation
Indices: 80984330--80984413 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
80984320 TCACTGATCG
80984330 ACTAGTAGAGATGGGACCATACTGAATCCCAGATTTTTGCCA
1 ACTAGTAGAGATGGGACCATACTGAATCCCAGATTTTTGCCA
*
80984372 ACTAGTAGAGATGGGACCATAGTGAATCCCAGATTTTTGCCA
1 ACTAGTAGAGATGGGACCATACTGAATCCCAGATTTTTGCCA
80984414 GTGAACACTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (42 bp):
ACTAGTAGAGATGGGACCATACTGAATCCCAGATTTTTGCCA
Found at i:80984700 original size:24 final size:24
Alignment explanation
Indices: 80984672--80984720 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
80984662 TTTTAAGGAA
*
80984672 TTATTTTTGATACTAATAAATAAG
1 TTATTTTTAATACTAATAAATAAG
*
80984696 TTATTTTTAATTCTAATAAATAAG
1 TTATTTTTAATACTAATAAATAAG
80984720 T
1 T
80984721 CAAAAGCTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (24 bp):
TTATTTTTAATACTAATAAATAAG
Found at i:80990241 original size:46 final size:47
Alignment explanation
Indices: 80990135--80990250 Score: 135
Period size: 50 Copynumber: 2.4 Consensus size: 47
80990125 TGTCTTCAAC
* * *
80990135 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGATCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* * *
80990185 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGATCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
80990231 ATGGACTTACATGGGTCATT
1 ATGGACTTACATGGATCATT
80990251 TTTGTCCTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 28 0.48
50 30 0.52
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGATCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:80994354 original size:40 final size:40
Alignment explanation
Indices: 80994317--80994501 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
80994307 GCTACTCGTT
* *
80994317 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
80994357 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
80994397 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
80994437 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
80994478 CAAA-GCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
80994502 CATCATTCAA
Statistics
Matches: 133, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
39 13 0.10
40 110 0.83
41 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:80999150 original size:30 final size:30
Alignment explanation
Indices: 80999104--80999161 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
80999094 TAGGCACTTC
* * *
80999104 CACAAGGGTAATCCACACGTCCGTGTGTGA
1 CACAAGGGTAAGCCACACGCCCATGTGTGA
*
80999134 CACACGGGTAAGCCACACGCCCATGTGT
1 CACAAGGGTAAGCCACACGCCCATGTGT
80999162 CATGGCCGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (30 bp):
CACAAGGGTAAGCCACACGCCCATGTGTGA
Found at i:81003303 original size:43 final size:43
Alignment explanation
Indices: 81003163--81003354 Score: 176
Period size: 43 Copynumber: 4.5 Consensus size: 43
81003153 GCGCCGCAAA
* *** *
81003163 AAACGCCGCTAAAGATCATGACCTTTA-CGGTACTTTTTCCAC
1 AAACACCGCTAAAGATCATGACCTTTAGCGACGCTTTTTCTAC
* * * *
81003205 AAACGCCGCTAAAGATCATGACCTTTAACGGCGCTTTTCCTAC
1 AAACACCGCTAAAGATCATGACCTTTAGCGACGCTTTTTCTAC
* * *
81003248 AAA-AGACACTAAAGATCATGACCTTCAGCGACGCTTTTTCTAC
1 AAACA-CCGCTAAAGATCATGACCTTTAGCGACGCTTTTTCTAC
* ** * *
81003291 AAACACCGCTAAAAATCACAACCTTTAGCAACGC-TTTTCTCAA
1 AAACACCGCTAAAGATCATGACCTTTAGCGACGCTTTTTCT-AC
81003334 AAACACCGCTAAA-AGTCATGA
1 AAACACCGCTAAAGA-TCATGA
81003355 AATTCAAAAA
Statistics
Matches: 124, Mismatches: 21, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
42 34 0.27
43 89 0.72
44 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.24
Consensus pattern (43 bp):
AAACACCGCTAAAGATCATGACCTTTAGCGACGCTTTTTCTAC
Found at i:81003346 original size:86 final size:87
Alignment explanation
Indices: 81003161--81003354 Score: 202
Period size: 86 Copynumber: 2.3 Consensus size: 87
81003151 AAGCGCCGCA
* * ** * * **
81003161 AAAAACGCCGCTAAAGATCATGACCTTTACGGTACTTTTTCCACAAACGCCGCTAAAGATCATGA
1 AAAAACACCGCTAAAGATCATGACCTTCACGACACTTTTTCCACAAACACCGCTAAAAATCACAA
**
81003226 CCTTTAACGGCGCTTTTCCTAC
66 CCTTTAACAACGCTTTTCCTAC
* *
81003248 AAAAGACA---CTAAAGATCATGACCTTCAGCGACGCTTTTTCTACAAACACCGCTAAAAATCAC
1 AAAA-ACACCGCTAAAGATCATGACCTTCA-CGACACTTTTTCCACAAACACCGCTAAAAATCAC
*
81003310 AACCTTTAGCAACGCTTTT-CT-C
64 AACCTTTAACAACGCTTTTCCTAC
81003332 AAAAACACCGCTAAA-AGTCATGA
1 AAAAACACCGCTAAAGA-TCATGA
81003355 AATTCAAAAA
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
83 3 0.03
84 5 0.06
85 21 0.24
86 53 0.60
87 4 0.05
88 2 0.02
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.24
Consensus pattern (87 bp):
AAAAACACCGCTAAAGATCATGACCTTCACGACACTTTTTCCACAAACACCGCTAAAAATCACAA
CCTTTAACAACGCTTTTCCTAC
Found at i:81007437 original size:9 final size:9
Alignment explanation
Indices: 81007402--81007438 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
81007392 TTTAATTTTA
*
81007402 ATTTTTTAT
1 ATTTTTTCT
81007411 ATTTTTTTCT
1 A-TTTTTTCT
81007421 ATTTTTTCT
1 ATTTTTTCT
81007430 ATTTTTTCT
1 ATTTTTTCT
81007439 TTTAAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.14, C:0.08, G:0.00, T:0.78
Consensus pattern (9 bp):
ATTTTTTCT
Found at i:81007534 original size:7 final size:7
Alignment explanation
Indices: 81007522--81007549 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
81007512 ATATAGACTA
81007522 AAATATT
1 AAATATT
81007529 AAATATT
1 AAATATT
81007536 AAATATT
1 AAATATT
81007543 AAATATT
1 AAATATT
81007550 TAAGTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AAATATT
Found at i:81007571 original size:6 final size:7
Alignment explanation
Indices: 81007554--81007594 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
81007544 AATATTTAAG
81007554 TTTTTTA
1 TTTTTTA
81007561 TTTTTTA
1 TTTTTTA
81007568 TTTTTTA
1 TTTTTTA
*
81007575 TTTTTAA
1 TTTTTTA
* *
81007582 ATTTTAA
1 TTTTTTA
81007589 TTTTTT
1 TTTTTT
81007595 TGAAGATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTTTA
Found at i:81008090 original size:24 final size:24
Alignment explanation
Indices: 81008062--81008110 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
81008052 CCAAAATAAC
81008062 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
81008086 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
81008110 A
1 A
81008111 TAAATATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:81008113 original size:11 final size:12
Alignment explanation
Indices: 81008069--81008114 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
81008059 AACAATTAAT
81008069 TTTTATATAAAC
1 TTTTATATAAAC
* * *
81008081 TTTTAAATTAAT
1 TTTTATATAAAC
81008093 TTTTATATAAAC
1 TTTTATATAAAC
81008105 TTTTA-ATAAA
1 TTTTATATAAA
81008115 TATATGAGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
11 5 0.18
12 23 0.82
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTATATAAAC
Found at i:81008771 original size:41 final size:41
Alignment explanation
Indices: 81008726--81008862 Score: 168
Period size: 41 Copynumber: 3.3 Consensus size: 41
81008716 GTTTATAACT
* * *
81008726 TTTAGTGGCGTTTTACCAAAAGTGCTGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
81008767 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* * * * * * *
81008808 TTTAACGGCGTTTTAACAAAAAACGCCACTATTGCTC-AGTT
1 TTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAATGCTCTGGTC
81008849 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
81008863 TGTTAAAATG
Statistics
Matches: 84, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
41 66 0.79
42 18 0.21
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
Found at i:81012784 original size:51 final size:51
Alignment explanation
Indices: 81012705--81012814 Score: 166
Period size: 51 Copynumber: 2.2 Consensus size: 51
81012695 TTACTTGCAA
* * **
81012705 CAGCAACATTATCCACTCCATGTGATGTTGTAAAATCACAAACATATTCAT
1 CAGCAACATTATCCACTCCATCTAATGTTACAAAATCACAAACATATTCAT
* *
81012756 CAGCAACATTATCCACTCTATCTAATGTTACAAAATCACCAACATATTCAT
1 CAGCAACATTATCCACTCCATCTAATGTTACAAAATCACAAACATATTCAT
81012807 CAGCAACA
1 CAGCAACA
81012815 ACTTCACTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.39, C:0.26, G:0.07, T:0.27
Consensus pattern (51 bp):
CAGCAACATTATCCACTCCATCTAATGTTACAAAATCACAAACATATTCAT
Found at i:81012983 original size:33 final size:33
Alignment explanation
Indices: 81012944--81013021 Score: 93
Period size: 33 Copynumber: 2.4 Consensus size: 33
81012934 TACCCCTCCT
* *
81012944 ACATCACCCTCCCCAACAGATTCTACCTTTTCT
1 ACATCACCCTCCCCAACAGATTCTACCTCTTCA
* ** * *
81012977 AGATCACATTCACCATCAGATTCTACCTCTTCA
1 ACATCACCCTCCCCAACAGATTCTACCTCTTCA
81013010 ACATCACCCTCC
1 ACATCACCCTCC
81013022 TCAGCAGTCA
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.27, C:0.41, G:0.04, T:0.28
Consensus pattern (33 bp):
ACATCACCCTCCCCAACAGATTCTACCTCTTCA
Found at i:81013690 original size:117 final size:117
Alignment explanation
Indices: 81013484--81013694 Score: 359
Period size: 117 Copynumber: 1.8 Consensus size: 117
81013474 GGTAACAGAA
*
81013484 ATCAACAACATCGAGACCACTGTCACATCACAAATCGACAAAACAAACCCTATATTGTGGCACTG
1 ATCAACAACATCGAGACCACTGTCACATCACAAATCGACAAAACAAACCCTACATTGTGGCACTG
*
81013549 AAATTGCAATAATAAGTCACAAATAACCATATACAATTTTAACAACAACTTT
66 AAATTGCAATAATAAATCACAAATAACCATATACAATTTTAACAACAACTTT
* * * * *
81013601 ATCAACAACATTGGGACCATTGTCGCTTCACAAATCGACAAAACAAACCCTACATTGTGGCACTG
1 ATCAACAACATCGAGACCACTGTCACATCACAAATCGACAAAACAAACCCTACATTGTGGCACTG
81013666 AAATTGCAATAATAAATCACAAATAACCA
66 AAATTGCAATAATAAATCACAAATAACCA
81013695 ACAAACCAAA
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 87 1.00
ACGTcount: A:0.44, C:0.24, G:0.10, T:0.22
Consensus pattern (117 bp):
ATCAACAACATCGAGACCACTGTCACATCACAAATCGACAAAACAAACCCTACATTGTGGCACTG
AAATTGCAATAATAAATCACAAATAACCATATACAATTTTAACAACAACTTT
Found at i:81014393 original size:38 final size:38
Alignment explanation
Indices: 81014339--81014413 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
81014329 TAATTTCCTT
81014339 AACTTTTTACACTTTAACCAAAAGTAGTGAAAAATCTA
1 AACTTTTTACACTTTAACCAAAAGTAGTGAAAAATCTA
* *
81014377 AACTTTTTGCAGTTTAACCAAAAGTAGTGAAAAATCT
1 AACTTTTTACACTTTAACCAAAAGTAGTGAAAAATCT
81014414 TTCACTTTCC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.32
Consensus pattern (38 bp):
AACTTTTTACACTTTAACCAAAAGTAGTGAAAAATCTA
Found at i:81020946 original size:16 final size:16
Alignment explanation
Indices: 81020915--81020951 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
81020905 ATGTGAAGAA
81020915 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
81020931 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
81020947 TATTA
1 TATTA
81020952 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:81021504 original size:5 final size:5
Alignment explanation
Indices: 81021494--81021526 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
81021484 AATAATTAAG
81021494 TATAT TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TAT
81021527 TATATATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:81021601 original size:31 final size:30
Alignment explanation
Indices: 81021566--81021626 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
81021556 GAAACAGAAT
*
81021566 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
81021597 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
81021627 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:81023202 original size:39 final size:39
Alignment explanation
Indices: 81023095--81023229 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
81023085 GACCTCGAGT
* * *
81023095 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** ** *
81023136 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
81023174 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
81023213 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
81023230 CCATATTGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 19 0.25
39 36 0.47
40 4 0.05
41 15 0.20
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:81031124 original size:372 final size:372
Alignment explanation
Indices: 81030499--81031251 Score: 1362
Period size: 372 Copynumber: 2.0 Consensus size: 372
81030489 TTAATTTTGA
*
81030499 TTAATTTTGACTATTTTCGACAGATTCGCGCAAAGGGCGAAAATTGGCTCGGCTGACACTGCTGA
1 TTAATTGTGACTATTTTCGACAGATTCGCGCAAAGGGCGAAAATTGGCTCGGCTGACACTGCTGA
* *
81030564 AAGCACAAAATCGAGAAGCAATTTGAAGTTTTGAGGCACATTAATTTCCAGCCTAAGACGATCCA
66 AAGCACAAAATCGAGAAGCAATTTGAAGTTTCGAGGCACATTAATTTCCAGCCTAAGACGACCCA
*
81030629 GAAATGTGTATTAATTCATAATTTAATTAATTTTAATTTATTCTCCATTTAATTTGGGTTAAATA
131 GAAATGTGTATTAATTCATAATTTAATTAATTTTAATTTATTCTCCATTTAATTTAGGTTAAATA
* *
81030694 AATTATTTTTAATTAATTATGGAGAAAGGGTCCAATTGAACCGCGCCATTCGAACCATATTGAGT
196 AATTATTTTTAATTAATTATGGAGAAAGGGTCCAATTGAACCACACCATTCGAACCATATTGAGT
** *
81030759 GAACTGAACCAGCAACTAATTGGTCAGACCAGAACCGTCAGCATTTTAGATGATTAAATATGCTT
261 GAACCAAACCAACAACTAATTGGTCAGACCAGAACCGTCAGCATTTTAGATGATTAAATATGCTT
81030824 GCAAAAAGGCCCTTGAAGAACTATCAAAATGCATTCAAACCCCTCCT
326 GCAAAAAGGCCCTTGAAGAACTATCAAAATGCATTCAAACCCCTCCT
*
81030871 TTAATTGTGACTATTTTCGACAGATTCGCGCAAAGGGCGAAAATTGGCTTGGCTGACACTGCTGA
1 TTAATTGTGACTATTTTCGACAGATTCGCGCAAAGGGCGAAAATTGGCTCGGCTGACACTGCTGA
81030936 AAGCACAAAATCGAGAAGCAATTTGAAGTTTCGAGGCACATTAATTTCCAGCCTAAGACGACCCA
66 AAGCACAAAATCGAGAAGCAATTTGAAGTTTCGAGGCACATTAATTTCCAGCCTAAGACGACCCA
81031001 GAAATGTGTATTAATTCATAATTTAATTAATTTTAATTTATTCTCCATTTAATTTAGGTTAAATA
131 GAAATGTGTATTAATTCATAATTTAATTAATTTTAATTTATTCTCCATTTAATTTAGGTTAAATA
*
81031066 AATTATTTTTAATTAATTATGGAGAAAGGGTCCAATTGAACCACACCGTTCGAACCATATTGAGT
196 AATTATTTTTAATTAATTATGGAGAAAGGGTCCAATTGAACCACACCATTCGAACCATATTGAGT
* ** *
81031131 GAACCAAACCAACAACTAATTGGTCAGCCCAGAATTGTCAGCATTTTAGCTGATTAAATATGCTT
261 GAACCAAACCAACAACTAATTGGTCAGACCAGAACCGTCAGCATTTTAGATGATTAAATATGCTT
*
81031196 GCAAAAAGGCCCTTGAAGAACTATCAAAATGCATTCAAGCCCCTCCT
326 GCAAAAAGGCCCTTGAAGAACTATCAAAATGCATTCAAACCCCTCCT
81031243 TTAATTGTG
1 TTAATTGTG
81031252 GCTTTATGAA
Statistics
Matches: 365, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
372 365 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (372 bp):
TTAATTGTGACTATTTTCGACAGATTCGCGCAAAGGGCGAAAATTGGCTCGGCTGACACTGCTGA
AAGCACAAAATCGAGAAGCAATTTGAAGTTTCGAGGCACATTAATTTCCAGCCTAAGACGACCCA
GAAATGTGTATTAATTCATAATTTAATTAATTTTAATTTATTCTCCATTTAATTTAGGTTAAATA
AATTATTTTTAATTAATTATGGAGAAAGGGTCCAATTGAACCACACCATTCGAACCATATTGAGT
GAACCAAACCAACAACTAATTGGTCAGACCAGAACCGTCAGCATTTTAGATGATTAAATATGCTT
GCAAAAAGGCCCTTGAAGAACTATCAAAATGCATTCAAACCCCTCCT
Found at i:81043837 original size:44 final size:44
Alignment explanation
Indices: 81043786--81044330 Score: 265
Period size: 44 Copynumber: 11.9 Consensus size: 44
81043776 CATCGTGGTG
* *
81043786 AATCTTATCTCCTTGAAGTTGCAGTGAAGTAGATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGTTACA
** * * * * *
81043830 AATCTTATCTCCCAAAAGTTGCAATGAAGCACATTGTAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGTTA-CA
* * *
81043875 AAT-TTATCTCTCTGAAGTTGCAGT-AGAGTAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGA-AGTAGATTGAAGTTACA
* * * *
81043918 TAA-CTTATCTCCCTGAAGTTGTAGTGAAGCAGATTGAAGATAGCG
1 -AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGTTA-CA
* * * *
81043963 AATCTTATTTCCCTAAAGTTGTAGTGGAA-CAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGT-GAAGTAGATT---G----AAGTTACA
* * * * * *
81044014 AATCTTATCTCCCTGAAGATGCAGTTG-AGAAAATTGAAGATGCG
1 AATCTTATCTCCCTGAAGTTGCAG-TGAAGTAGATTGAAGTTACA
* * * * **
81044058 CATCTTATTTCCCTAAAGTTGCAGTGGAACAGAGTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGT-G---A-AGT--AGATTGAAGTTACA
* * * * * *
81044109 AATCTTATCTCCCTAAAGTTACAATGGAGCAGATTGAA-TATGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGT-TACA
* * * * * ***
81044153 AATTTTATCTCCCTGAAATTGCAGTGAAGCAGGTTGAAGATGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGTTACA
* * * *
81044197 AATCTTATTTCCTTGAAGTTACAGTGAAATAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATT---G----AAGTTACA
* * * * **
81044248 AATCTTATCTCCTTGAAATTGCAGTGGAGCAGATTGAAGTTATT
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGTTACA
* * *
81044292 AATCTTATCTCCCTAAAGTTGCGGTGGAGTAGATTGAAG
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAG
81044331 CGACGAACCC
Statistics
Matches: 373, Mismatches: 94, Indels: 68
0.70 0.18 0.13
Matches are distributed among these distances:
43 5 0.01
44 229 0.61
45 33 0.09
46 5 0.01
47 1 0.00
48 3 0.01
49 2 0.01
50 2 0.01
51 87 0.23
52 6 0.02
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGTTACA
Found at i:81044145 original size:95 final size:96
Alignment explanation
Indices: 81043822--81044178 Score: 369
Period size: 95 Copynumber: 3.8 Consensus size: 96
81043812 AAGTAGATTA
* * * *
81043822 AAGTTACAAATCTTATCTCCCAAAAGTTGCAATGAAGCACATTGTAGATAGCAAAT-TTATCTCT
1 AAGTTACAAATCTTATCTCCCTAAAGTTGCAATGAAGCAGATTGAAGATAGCAAATCTTATCTCC
* * **
81043886 CTGAAGTTGCAGTAGAGTAGATTAAAGCTAC
66 CTAAAGTTGCAGTGGAACAGATTAAAGCTAC
* * * * *
81043917 -A--T---AA-CTTATCTCCCTGAAGTTGTAGTGAAGCAGATTGAAGATAGCGAATCTTATTTCC
1 AAGTTACAAATCTTATCTCCCTAAAGTTGCAATGAAGCAGATTGAAGATAGCAAATCTTATCTCC
*
81043975 CTAAAGTTGTAGTGGAACAGATTAAAGCTAC
66 CTAAAGTTGCAGTGGAACAGATTAAAGCTAC
* * * * * ** *
81044006 AAGTTACAAATCTTATCTCCCTGAAGATGCAGTTG-AGAAAATTGAAGAT-GCGCATCTTATTTC
1 AAGTTACAAATCTTATCTCCCTAAAGTTGCA-ATGAAGCAGATTGAAGATAGCAAATCTTATCTC
*
81044069 CCTAAAGTTGCAGTGGAACAGAGTAAAGCTAC
65 CCTAAAGTTGCAGTGGAACAGATTAAAGCTAC
* * * *
81044101 AAGTTACAAATCTTATCTCCCTAAAGTTACAATGGAGCAGATTGAATAT-GCAAATTTTATCTCC
1 AAGTTACAAATCTTATCTCCCTAAAGTTGCAATGAAGCAGATTGAAGATAGCAAATCTTATCTCC
81044165 CTGAAA-TTGCAGTG
66 CT-AAAGTTGCAGTG
81044179 AAGCAGGTTG
Statistics
Matches: 218, Mismatches: 33, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
88 38 0.17
89 34 0.16
90 1 0.00
92 2 0.01
94 3 0.01
95 105 0.48
96 33 0.15
97 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (96 bp):
AAGTTACAAATCTTATCTCCCTAAAGTTGCAATGAAGCAGATTGAAGATAGCAAATCTTATCTCC
CTAAAGTTGCAGTGGAACAGATTAAAGCTAC
Found at i:81044329 original size:139 final size:138
Alignment explanation
Indices: 81044012--81044330 Score: 374
Period size: 139 Copynumber: 2.3 Consensus size: 138
81044002 CTACAAGTTA
* * * * *
81044012 CAAATCTTATCTCCCTGAAGATGCAGTTGAGAAAATTGAAGATGCGCATCTTATTTCCCTAAAGT
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAGATGCGAATCTTATTTCCCTAAAGT
* *
81044077 TGCAGTGGAACAGAGTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTACAATGGAGCAGA
66 TACAGTGAAACAGAGTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTACAATGGAGCAGA
81044142 TTGAATAT
131 TTGAATAT
* * * * * * *
81044150 GCAAATTTTATCTCCCTGAAA-TTGCAGTGAAGCAGGTTGAAGATGTGAATCTTATTTCCTTGAA
1 -CAAATCTTATCTCCCT-AAAGTTGCAGTGGAGAAGATTGAAGATGCGAATCTTATTTCCCTAAA
* * * * *
81044214 GTTACAGTGAAATAGATTAAAGCTACAAGTTACAAATCTTATCTCCTTGAAA-TTGCAGTGGAGC
64 GTTACAGTGAAACAGAGTAAAGCTACAAGTTACAAATCTTATCTCCCT-AAAGTTACAATGGAGC
81044278 AGATTGAAGTTAT
128 AGATTGAA--TAT
* * *
81044291 -TAATCTTATCTCCCTAAAGTTGCGGTGGAGTAGATTGAAG
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAG
81044331 CGACGAACCC
Statistics
Matches: 150, Mismatches: 25, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
138 3 0.02
139 139 0.93
140 5 0.03
141 3 0.02
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (138 bp):
CAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAGATGCGAATCTTATTTCCCTAAAGT
TACAGTGAAACAGAGTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTACAATGGAGCAGA
TTGAATAT
Found at i:81049480 original size:43 final size:43
Alignment explanation
Indices: 81049433--81049550 Score: 132
Period size: 43 Copynumber: 2.7 Consensus size: 43
81049423 AGAAAAAGAC
*
81049433 CAAAAAAGGAAGCTACATGGAAGAAACCACA-AT-TGCATCCAAA
1 CAAAAAAGGAAGCAACATGGAAGAAACCACATATATG--TCCAAA
** * *
81049476 CAAAAAAGGAAGCAATGTGGAAGTAACCACATCTATGTCCAAA
1 CAAAAAAGGAAGCAACATGGAAGAAACCACATATATGTCCAAA
* * *
81049519 CAAAAAAGGAAGCAACCTAGAAGCAACCACAT
1 CAAAAAAGGAAGCAACATGGAAGAAACCACAT
81049551 TAGGACAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
43 61 0.95
44 1 0.02
45 2 0.03
ACGTcount: A:0.50, C:0.21, G:0.17, T:0.12
Consensus pattern (43 bp):
CAAAAAAGGAAGCAACATGGAAGAAACCACATATATGTCCAAA
Found at i:81056324 original size:6 final size:6
Alignment explanation
Indices: 81056304--81056340 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
81056294 CTAGTTTGAG
81056304 AAAAAT -AAAAT -AAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
81056341 GAACACACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 10 0.33
6 20 0.67
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:81057211 original size:20 final size:21
Alignment explanation
Indices: 81057165--81057212 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
81057155 AATTATTTTA
*
81057165 AATTATAAATATTATAAATATT
1 AATTA-AAATATTATAAAAATT
*
81057187 -TTTAAAATATTA-AAAAATT
1 AATTAAAATATTATAAAAATT
81057206 AATTAAA
1 AATTAAA
81057213 TTTGACATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
19 6 0.27
20 13 0.59
21 3 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AATTAAAATATTATAAAAATT
Found at i:81062419 original size:30 final size:30
Alignment explanation
Indices: 81062383--81062442 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
81062373 TATTTTATTA
* *
81062383 TTAATTTTGTTATTATTTTAAAGGTATTTG
1 TTAATTTTATTATTATTCTAAAGGTATTTG
*
81062413 TTAATTTTATTATTATTCTAGAGGTATTTG
1 TTAATTTTATTATTATTCTAAAGGTATTTG
81062443 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTCTAAAGGTATTTG
Found at i:81065394 original size:12 final size:12
Alignment explanation
Indices: 81065377--81065412 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
81065367 AAGCATGTCA
81065377 TATCTGTATTTG
1 TATCTGTATTTG
81065389 TATCTGTATTCTG
1 TATCTGTATT-TG
81065402 TATCTGT-TTTG
1 TATCTGTATTTG
81065413 GGGCGGGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 2 0.09
12 12 0.52
13 9 0.39
ACGTcount: A:0.14, C:0.11, G:0.17, T:0.58
Consensus pattern (12 bp):
TATCTGTATTTG
Found at i:81074541 original size:26 final size:26
Alignment explanation
Indices: 81074490--81074549 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
81074480 AGCGATTTCA
** *
81074490 TAGGCCGAGGTCATTTTGGGCTATTT
1 TAGGCCGAGGTCATTTTGAACCATTT
*
81074516 TGGGCCGAGGTCATTTTGAACCATTT
1 TAGGCCGAGGTCATTTTGAACCATTT
81074542 TAGGCCGA
1 TAGGCCGA
81074550 ACTGAGCTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.18, C:0.18, G:0.30, T:0.33
Consensus pattern (26 bp):
TAGGCCGAGGTCATTTTGAACCATTT
Found at i:81079089 original size:8 final size:9
Alignment explanation
Indices: 81079065--81079107 Score: 70
Period size: 9 Copynumber: 4.8 Consensus size: 9
81079055 TAAATGGCAT
81079065 TTTTGTTTAC
1 TTTT-TTTAC
81079075 TTTTTTTAC
1 TTTTTTTAC
81079084 TTTTTTTAC
1 TTTTTTTAC
81079093 -TTTTTTAC
1 TTTTTTTAC
81079101 TTTTTTT
1 TTTTTTT
81079108 CTTATATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.25
9 20 0.62
10 4 0.12
ACGTcount: A:0.09, C:0.09, G:0.02, T:0.79
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:81079093 original size:18 final size:17
Alignment explanation
Indices: 81079065--81079107 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 17
81079055 TAAATGGCAT
81079065 TTTTGTTTACTTTTTTTAC
1 TTTT-TTTAC-TTTTTTAC
81079084 TTTTTTTACTTTTTTAC
1 TTTTTTTACTTTTTTAC
81079101 TTTTTTT
1 TTTTTTT
81079108 CTTATATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 15 0.62
18 5 0.21
19 4 0.17
ACGTcount: A:0.09, C:0.09, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTTTTACTTTTTTAC
Found at i:81079096 original size:7 final size:8
Alignment explanation
Indices: 81079070--81079106 Score: 56
Period size: 8 Copynumber: 4.4 Consensus size: 8
81079060 GGCATTTTTG
81079070 TTTACTTTT
1 TTTAC-TTT
81079079 TTTACTTTT
1 TTTAC-TTT
81079088 TTTACTTT
1 TTTACTTT
81079096 TTTACTTT
1 TTTACTTT
81079104 TTT
1 TTT
81079107 TCTTATATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 14 0.50
9 14 0.50
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTACTTT
Found at i:81079165 original size:38 final size:36
Alignment explanation
Indices: 81079123--81079197 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 36
81079113 ATTTTGTCTC
* *
81079123 TTTCTCAGATTT-TTTTTCTTTTTTAAGTTTTATATTAT
1 TTTCTCA-ATTTATTTTGCTTATTTAA--TTTATATTAT
*
81079161 TTTCTTAATTTATTTTGCTTATTTAATTTATATTAT
1 TTTCTCAATTTATTTTGCTTATTTAATTTATATTAT
81079197 T
1 T
81079198 AATTTTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 11 0.33
37 4 0.12
38 18 0.55
ACGTcount: A:0.21, C:0.07, G:0.04, T:0.68
Consensus pattern (36 bp):
TTTCTCAATTTATTTTGCTTATTTAATTTATATTAT
Found at i:81079202 original size:18 final size:17
Alignment explanation
Indices: 81079151--81079198 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
81079141 TTTTTTAAGT
*
81079151 TTTATATTATTTTCTTAA
1 TTTATATTATTAT-TTAA
* *
81079169 TTTATTTTGCTTATTTAA
1 TTTATATT-ATTATTTAA
81079187 TTTATATTATTA
1 TTTATATTATTA
81079199 ATTTTAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
17 3 0.12
18 18 0.75
19 3 0.12
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTATATTATTATTTAA
Found at i:81079256 original size:21 final size:21
Alignment explanation
Indices: 81079200--81079273 Score: 60
Period size: 21 Copynumber: 3.4 Consensus size: 21
81079190 ATATTATTAA
* * * *
81079200 TTTTAAAAAATTTGTAATATA
1 TTTTTAAAATTTTATAATATT
*
81079221 TATTTAAAATGTTTTATAATATT
1 TTTTTAAAA--TTTTATAATATT
*
81079244 TTTTTAAAATTTTA-ATTATT
1 TTTTTAAAATTTTATAATATT
81079264 ATTTTTAAAA
1 -TTTTTAAAA
81079274 ATATTTTTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
20 5 0.12
21 21 0.49
23 17 0.40
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
TTTTTAAAATTTTATAATATT
Found at i:81079274 original size:22 final size:23
Alignment explanation
Indices: 81079187--81079275 Score: 78
Period size: 23 Copynumber: 4.0 Consensus size: 23
81079177 GCTTATTTAA
* *
81079187 TTTATATTATTAATTTTAAAAAA
1 TTTATATTATTATTTTTAAAAAT
* * * *
81079210 TTTGTAATA-TATATTTAAAATGT
1 TTTATATTATTATTTTTAAAA-AT
*
81079233 TTTATAATATT-TTTTT-AAAAT
1 TTTATATTATTATTTTTAAAAAT
81079254 TTTA-ATTATTATTTTTAAAAAT
1 TTTATATTATTATTTTTAAAAAT
81079276 ATTTTTTAAC
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
20 5 0.10
21 10 0.19
22 17 0.33
23 19 0.37
24 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
TTTATATTATTATTTTTAAAAAT
Found at i:81079554 original size:18 final size:18
Alignment explanation
Indices: 81079531--81079577 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
81079521 CTGACTATTA
81079531 ATAAATTTAAATATAAAT
1 ATAAATTTAAATATAAAT
*
81079549 ATAAATTTTAA-A-AAAT
1 ATAAATTTAAATATAAAT
*
81079565 ATATA-TTAAATAT
1 ATAAATTTAAATAT
81079578 TATTTTATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
15 4 0.17
16 9 0.38
17 1 0.04
18 10 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAAATTTAAATATAAAT
Found at i:81079783 original size:27 final size:26
Alignment explanation
Indices: 81079750--81079823 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 26
81079740 AAATTTTAAA
81079750 TATAATTTTTAAATACATTTAAAAAAT
1 TATAATTTTTAAATA-ATTTAAAAAAT
* * *
81079777 TATAATTTTTTAATAATATAAGAAAT
1 TATAATTTTTAAATAATTTAAAAAAT
*
81079803 CATAATATTTTAAATATATTT
1 TATAAT-TTTTAAATA-ATTT
81079824 TTTAAAATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
26 14 0.36
27 22 0.56
28 3 0.08
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (26 bp):
TATAATTTTTAAATAATTTAAAAAAT
Found at i:81079802 original size:26 final size:27
Alignment explanation
Indices: 81079750--81079815 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 27
81079740 AAATTTTAAA
* *
81079750 TATAATTTTTAAATACATTTAAAAAAT
1 TATAATTTTTTAATACATATAAAAAAT
*
81079777 TATAATTTTTTAATA-ATATAAGAAAT
1 TATAATTTTTTAATACATATAAAAAAT
* *
81079803 CATAATATTTTAA
1 TATAATTTTTTAA
81079816 ATATATTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 20 0.59
27 14 0.41
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (27 bp):
TATAATTTTTTAATACATATAAAAAAT
Found at i:81079951 original size:20 final size:19
Alignment explanation
Indices: 81079916--81079954 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
81079906 ATTAATTTTA
*
81079916 AAAATTTTTATGTATATTT
1 AAAATTTTTATATATATTT
81079935 AAAATTTTTATAATATATTT
1 AAAATTTTTAT-ATATATTT
81079955 TTACAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (19 bp):
AAAATTTTTATATATATTT
Found at i:81079969 original size:20 final size:21
Alignment explanation
Indices: 81079940--81079982 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
81079930 TATTTAAAAT
81079940 TTTTATAATA-TATTTTTACAA
1 TTTTATAATATTATTTTTA-AA
81079961 TTTTA-AATATTATTTTTAAA
1 TTTTATAATATTATTTTTAAA
81079981 TT
1 TT
81079983 CTTTTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTATAATATTATTTTTAAA
Found at i:81080112 original size:20 final size:21
Alignment explanation
Indices: 81080087--81080126 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
81080077 GATTAATAAA
*
81080087 TTTAAATATAAATA-TAAATT
1 TTTAAAAATAAATATTAAATT
*
81080107 TTTAAAAATATATATTAAAT
1 TTTAAAAATAAATATTAAAT
81080127 ATATTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTAAAAATAAATATTAAATT
Found at i:81080170 original size:18 final size:18
Alignment explanation
Indices: 81080130--81080171 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
81080120 ATTAAATATA
81080130 TTTTTTATTATTTTGACT
1 TTTTTTATTATTTTGACT
* * *
81080148 CTTTTTATTGTTTTG-TT
1 TTTTTTATTATTTTGACT
81080165 TTTTTTA
1 TTTTTTA
81080172 AAAAAAATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.12, C:0.05, G:0.07, T:0.76
Consensus pattern (18 bp):
TTTTTTATTATTTTGACT
Found at i:81083164 original size:30 final size:30
Alignment explanation
Indices: 81083128--81083250 Score: 183
Period size: 30 Copynumber: 4.1 Consensus size: 30
81083118 GTCCCAGAGT
* *
81083128 AGTTCATATAACCCAGACATAGGTGGTTCG
1 AGTTCATATCACCCGGACATAGGTGGTTCG
*
81083158 AGTTCATATCACCCGGACATGGGTGGTTCG
1 AGTTCATATCACCCGGACATAGGTGGTTCG
* *
81083188 AGTTCATATCACTCGGACATGGGTGGTTCG
1 AGTTCATATCACCCGGACATAGGTGGTTCG
* *
81083218 AGTTCATATCACCCGGATATAGGTAGTTCG
1 AGTTCATATCACCCGGACATAGGTGGTTCG
81083248 AGT
1 AGT
81083251 CCATTTGACC
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 85 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (30 bp):
AGTTCATATCACCCGGACATAGGTGGTTCG
Found at i:81086764 original size:14 final size:13
Alignment explanation
Indices: 81086729--81086764 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
81086719 TTTATAAATA
81086729 TTAAAATTATTTT
1 TTAAAATTATTTT
*
81086742 TTCAAATTATTTT
1 TTAAAATTATTTT
81086755 TTAAATATTA
1 TTAAA-ATTA
81086765 AATATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (13 bp):
TTAAAATTATTTT
Found at i:81086805 original size:19 final size:18
Alignment explanation
Indices: 81086776--81086820 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
81086766 ATATATTTTT
81086776 AATATTATAAAACATTTAA
1 AATATT-TAAAACATTTAA
**
81086795 AATGATTTAAATGATTTAA
1 AAT-ATTTAAAACATTTAA
81086814 AATATTT
1 AATATTT
81086821 TTTAATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 4 0.17
19 16 0.70
20 3 0.13
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.42
Consensus pattern (18 bp):
AATATTTAAAACATTTAA
Done.