Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 245 of 343
Found at i:81086831 original size:9 final size:9
Alignment explanation
Indices: 81086753--81086850 Score: 65
Period size: 9 Copynumber: 10.4 Consensus size: 9
81086743 TCAAATTATT
81086753 TTTTAAATA
1 TTTTAAATA
*
81086762 -TTAAATATA
1 TTTTAA-ATA
*
81086771 TTTTTAATA
1 TTTTAAATA
* *
81086780 TTATAAAACA
1 TT-TTAAATA
*
81086790 TTTAAAATGA
1 TTTTAAAT-A
81086800 -TTTAAATGA
1 TTTTAAAT-A
*
81086809 TTTAAAATA
1 TTTTAAATA
*
81086818 TTTTTTAATA
1 -TTTTAAATA
81086828 TTTTAAATGA
1 TTTTAAAT-A
81086838 TTTTAAATA
1 TTTTAAATA
81086847 TTTT
1 TTTT
81086851 TTAAATTTTA
Statistics
Matches: 70, Mismatches: 12, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
8 4 0.06
9 34 0.49
10 32 0.46
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (9 bp):
TTTTAAATA
Found at i:81086850 original size:19 final size:19
Alignment explanation
Indices: 81086789--81086849 Score: 72
Period size: 19 Copynumber: 3.2 Consensus size: 19
81086779 ATTATAAAAC
81086789 ATTTAAAATGA-TTTAAAT
1 ATTTAAAATGATTTTAAAT
*
81086807 GATTTAAAAT-ATTTTTTAAT
1 -ATTTAAAATGA-TTTTAAAT
*
81086827 ATTTTAAATGATTTTAAAT
1 ATTTAAAATGATTTTAAAT
81086846 ATTT
1 ATTT
81086850 TTTAAATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
18 1 0.03
19 28 0.78
20 7 0.19
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (19 bp):
ATTTAAAATGATTTTAAAT
Found at i:81086878 original size:29 final size:29
Alignment explanation
Indices: 81086800--81086860 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
81086790 TTTAAAATGA
*
81086800 TTTAAATGATTTAAAATATTTTTTAATAT
1 TTTAAATGATTTTAAATATTTTTTAATAT
81086829 TTTAAATGATTTTAAATATTTTTTAA-AT
1 TTTAAATGATTTTAAATATTTTTTAATAT
81086857 TTTA
1 TTTA
81086861 CATAGAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 6 0.19
29 25 0.81
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (29 bp):
TTTAAATGATTTTAAATATTTTTTAATAT
Found at i:81087386 original size:36 final size:36
Alignment explanation
Indices: 81087314--81087388 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 36
81087304 CATACATTTC
* * *
81087314 AAATATTATAAAACTAATAAACAAAATATAATAAGA
1 AAATAATATAAAACTAATAAACAAAAAAAAATAAGA
81087350 AAATAATATAAAACTTAA-AAA-AAAAAAAAATAAAGA
1 AAATAATATAAAAC-TAATAAACAAAAAAAAAT-AAGA
81087386 AAA
1 AAA
81087389 AGACAAAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 8 0.24
36 23 0.68
37 3 0.09
ACGTcount: A:0.73, C:0.04, G:0.03, T:0.20
Consensus pattern (36 bp):
AAATAATATAAAACTAATAAACAAAAAAAAATAAGA
Found at i:81087475 original size:20 final size:21
Alignment explanation
Indices: 81087437--81087494 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 21
81087427 GAAATGTATA
81087437 AAAAAATAAATAAAATAGA-T-
1 AAAAAATAAA-AAAATAGACTC
81087457 AAAAAATAAAAAAATTAGACTTC
1 AAAAAATAAAAAAA-TAGAC-TC
81087480 AAAAAACTAAAAAAA
1 AAAAAA-TAAAAAAA
81087495 AAAAAATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.12
20 14 0.42
22 1 0.03
23 6 0.18
24 8 0.24
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.17
Consensus pattern (21 bp):
AAAAAATAAAAAAATAGACTC
Found at i:81087579 original size:37 final size:36
Alignment explanation
Indices: 81087509--81087579 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 36
81087499 AATAATTATT
*
81087509 TTTTTAAAATTTTAAAAAATTAATTTGAAAAATACA
1 TTTTTAAAATTTTAAAAAATTAATTTCAAAAATACA
* * *
81087545 TTTTTAAAATTTATAAATAATTACTTTCACAAATA
1 TTTTTAAAATTT-TAAAAAATTAATTTCAAAAATA
81087580 TATATAAAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 12 0.40
37 18 0.60
ACGTcount: A:0.49, C:0.06, G:0.01, T:0.44
Consensus pattern (36 bp):
TTTTTAAAATTTTAAAAAATTAATTTCAAAAATACA
Found at i:81087628 original size:22 final size:24
Alignment explanation
Indices: 81087600--81087686 Score: 78
Period size: 22 Copynumber: 3.9 Consensus size: 24
81087590 TAAAAAATAT
81087600 TTTTAAAAATAATAAT-TAAAA-A
1 TTTTAAAAATAATAATATAAAACA
*
81087622 TTTT-AAAA-AATATTATAAAACA
1 TTTTAAAAATAATAATATAAAACA
* * **
81087644 TTTTAAATAT-ATATTAT-AAATT
1 TTTTAAAAATAATAATATAAAACA
*
81087666 TTTTAAAATTAATAATATAAA
1 TTTTAAAAATAATAATATAAA
81087687 TTAAATAAGT
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
20 5 0.10
21 9 0.17
22 20 0.38
23 16 0.31
24 2 0.04
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (24 bp):
TTTTAAAAATAATAATATAAAACA
Found at i:81087630 original size:23 final size:22
Alignment explanation
Indices: 81087593--81087650 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
81087583 ATAAAGTTAA
* *
81087593 AAAATATTTTTAAAAATAATAATT
1 AAAACATTTTAAAAAAT-ATAA-T
*
81087617 AAAA-ATTTTAAAAAATATTAT
1 AAAACATTTTAAAAAATATAAT
81087638 AAAACATTTTAAA
1 AAAACATTTTAAA
81087651 TATATATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 5 0.16
22 11 0.35
23 11 0.35
24 4 0.13
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAACATTTTAAAAAATATAAT
Found at i:81087674 original size:23 final size:22
Alignment explanation
Indices: 81087598--81087688 Score: 73
Period size: 23 Copynumber: 4.1 Consensus size: 22
81087588 GTTAAAAAAT
*
81087598 ATTTTTAAAAATAATAATTA-AA
1 ATTTTTTAAAATAAT-ATTATAA
*
81087620 A-ATTTTAAAA-AATATTATAAA
1 ATTTTTTAAAATAATATTAT-AA
**
81087641 ACATTTT-AAATATATATTATAA
1 ATTTTTTAAAATA-ATATTATAA
*
81087663 ATTTTTTAAAATTAATAATATAA
1 ATTTTTTAAAA-TAATATTATAA
81087686 ATT
1 ATT
81087689 AAATAAGTAA
Statistics
Matches: 57, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
19 4 0.07
20 3 0.05
21 13 0.23
22 14 0.25
23 21 0.37
24 2 0.04
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (22 bp):
ATTTTTTAAAATAATATTATAA
Found at i:81087692 original size:18 final size:17
Alignment explanation
Indices: 81087675--81087722 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
81087665 TTTTTAAAAT
81087675 TAATAATATAAATTAAA
1 TAATAATATAAATTAAA
*
81087692 TAAGTAAAATAAATTAAGA
1 TAA-TAATATAAATTAA-A
*
81087711 AAATAATATAAA
1 TAATAATATAAA
81087723 ACTTAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (17 bp):
TAATAATATAAATTAAA
Found at i:81087782 original size:9 final size:9
Alignment explanation
Indices: 81087768--81087798 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
81087758 ATATAAGAAA
81087768 AAAAGTAAT
1 AAAAGTAAT
81087777 AAAAGTAAT
1 AAAAGTAAT
81087786 AAAAGTAAT
1 AAAAGTAAT
81087795 AAAA
1 AAAA
81087799 AAATATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (9 bp):
AAAAGTAAT
Found at i:81092743 original size:35 final size:35
Alignment explanation
Indices: 81092628--81092749 Score: 172
Period size: 35 Copynumber: 3.5 Consensus size: 35
81092618 ATAAAGAAAA
*
81092628 CCATACTGAGATGTGAAACGTAGGTATGACATTTT
1 CCATACTGAGTTGTGAAACGTAGGTATGACATTTT
* * * *
81092663 CCATACCGAGTGGTGAAATGTATGTATGACATTTT
1 CCATACTGAGTTGTGAAACGTAGGTATGACATTTT
* *
81092698 TCATACTGAGTTGTGAAACGTAGGTATGATATTTT
1 CCATACTGAGTTGTGAAACGTAGGTATGACATTTT
*
81092733 CCATATTGAGTTGTGAA
1 CCATACTGAGTTGTGAA
81092750 CTATGGCACC
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 74 1.00
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.35
Consensus pattern (35 bp):
CCATACTGAGTTGTGAAACGTAGGTATGACATTTT
Found at i:81096832 original size:42 final size:42
Alignment explanation
Indices: 81096777--81096932 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
81096767 AAAATCGACA
*
81096777 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
81096819 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
81096861 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
81096905 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
81096933 CGATAACATA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 51 0.53
43 14 0.15
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:81104154 original size:42 final size:42
Alignment explanation
Indices: 81104100--81104255 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
81104090 AAATCATTCA
*
81104100 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
81104142 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
81104184 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
81104228 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
81104256 CGATAACATA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 51 0.53
43 14 0.15
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:81111135 original size:35 final size:35
Alignment explanation
Indices: 81111023--81111144 Score: 156
Period size: 35 Copynumber: 3.5 Consensus size: 35
81111013 ATAAAGAAAA
* *
81111023 CCATACTGTGATGTGAAACGTAGGTAT-GTCATTTT
1 CCATACTGAGTTGTGAAACGTAGGTATGGT-ATTTT
* * *
81111058 CCATACCGAGTGGTGAAATGTAGGTATGGTATTTT
1 CCATACTGAGTTGTGAAACGTAGGTATGGTATTTT
*
81111093 TCATACTGAGTTGTGAAACGTAGGTATGGTATTTT
1 CCATACTGAGTTGTGAAACGTAGGTATGGTATTTT
* *
81111128 CCTTACTGAATTGTGAA
1 CCATACTGAGTTGTGAA
81111145 TTGTGGCACT
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
35 72 0.97
36 2 0.03
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.37
Consensus pattern (35 bp):
CCATACTGAGTTGTGAAACGTAGGTATGGTATTTT
Found at i:81121365 original size:18 final size:18
Alignment explanation
Indices: 81121304--81121385 Score: 83
Period size: 18 Copynumber: 4.6 Consensus size: 18
81121294 TAACATTCAA
* *
81121304 TTATTTAGTAGCAATTAG
1 TTATTCAGTAGCAATCAG
* *
81121322 TTATTCAATAGCAATCAT
1 TTATTCAGTAGCAATCAG
**
81121340 TTGCTCAGTAGCAATCAG
1 TTATTCAGTAGCAATCAG
* * *
81121358 TTATTCAGTAACGATCAA
1 TTATTCAGTAGCAATCAG
81121376 TTATTCAGTA
1 TTATTCAGTA
81121386 ATAGTCAGTC
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (18 bp):
TTATTCAGTAGCAATCAG
Found at i:81121384 original size:36 final size:35
Alignment explanation
Indices: 81121292--81121403 Score: 98
Period size: 36 Copynumber: 3.1 Consensus size: 35
81121282 AGTTTCATTT
* *
81121292 AGTAACATTCAATTATTTAGTAGCAATTAGTTATTC
1 AGTAACA-TCAATTATTCAGTAGCAATCAGTTATTC
* * * **
81121328 AATAGCAATCATTTGCTCAGTAGCAATCAGTTATTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAGTTATTC
** * *
81121364 AGTAACGATCAATTATTCAGTAATAGTCAGTCATTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAGTTATTC
81121400 AGTA
1 AGTA
81121404 CTTTTATTTA
Statistics
Matches: 58, Mismatches: 17, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
36 57 0.98
37 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (35 bp):
AGTAACATCAATTATTCAGTAGCAATCAGTTATTC
Found at i:81122859 original size:28 final size:30
Alignment explanation
Indices: 81122819--81122889 Score: 103
Period size: 28 Copynumber: 2.4 Consensus size: 30
81122809 ATAATTATTT
81122819 AATTAATAAATATCT-TTTACTT-AATAATA
1 AATTAATAAATATCTATTTACTTAAATAA-A
81122848 AA-TAATAAATATCTATTTACTTAAATAAA
1 AATTAATAAATATCTATTTACTTAAATAAA
81122877 AATTAATTAAATA
1 AATTAA-TAAATA
81122890 AATATATCAC
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
28 12 0.32
29 12 0.32
30 8 0.21
31 6 0.16
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.41
Consensus pattern (30 bp):
AATTAATAAATATCTATTTACTTAAATAAA
Found at i:81123212 original size:20 final size:20
Alignment explanation
Indices: 81123166--81123213 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
81123156 AGTTCTTTTT
*
81123166 CCTAATTACTCTTAATTAAG
1 CCTAATTACACTTAATTAAG
81123186 -CTAAATT-CACTTAATTAAAG
1 CCT-AATTACACTTAATT-AAG
81123206 CCTAATTA
1 CCTAATTA
81123214 ACCACTCGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.38
Consensus pattern (20 bp):
CCTAATTACACTTAATTAAG
Found at i:81124663 original size:17 final size:18
Alignment explanation
Indices: 81124641--81124680 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
81124631 ACTTATGTGT
81124641 ATATAAA-AATTAATAAA
1 ATATAAATAATTAATAAA
* *
81124658 ATATAAATGATTATTAAA
1 ATATAAATAATTAATAAA
81124676 ATATA
1 ATATA
81124681 TATTATGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
ATATAAATAATTAATAAA
Found at i:81126017 original size:10 final size:10
Alignment explanation
Indices: 81126002--81126028 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
81125992 TTTATAGCCG
81126002 AAAAATAAAT
1 AAAAATAAAT
81126012 AAAAATAAAT
1 AAAAATAAAT
81126022 AAAAATA
1 AAAAATA
81126029 GATTTCCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:81126496 original size:15 final size:15
Alignment explanation
Indices: 81126476--81126519 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
81126466 TGGACACTTA
81126476 TTATTTTTATTTTTG
1 TTATTTTTATTTTTG
81126491 TTATTTTGT-TTTTT-
1 TTATTTT-TATTTTTG
*
81126505 TTAATTTTATTTTTG
1 TTATTTTTATTTTTG
81126520 GTATGGGCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
13 1 0.04
14 11 0.44
15 12 0.48
16 1 0.04
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.80
Consensus pattern (15 bp):
TTATTTTTATTTTTG
Found at i:81126502 original size:14 final size:15
Alignment explanation
Indices: 81126480--81126519 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
81126470 CACTTATTAT
81126480 TTTTATTTTTGTT-A
1 TTTTATTTTTGTTAA
* *
81126494 TTTTGTTTTTTTTAA
1 TTTTATTTTTGTTAA
81126509 TTTTATTTTTG
1 TTTTATTTTTG
81126520 GTATGGGCTC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.12, C:0.00, G:0.07, T:0.80
Consensus pattern (15 bp):
TTTTATTTTTGTTAA
Found at i:81128386 original size:11 final size:10
Alignment explanation
Indices: 81128365--81128426 Score: 51
Period size: 11 Copynumber: 6.2 Consensus size: 10
81128355 CATGTTCTTG
81128365 TTTTC-TTTC
1 TTTTCTTTTC
81128374 TTCTTCTTTTC
1 TT-TTCTTTTC
81128385 TTTTCTTTGT-
1 TTTTCTTT-TC
81128395 TATTTC--TTC
1 T-TTTCTTTTC
*
81128404 TTTTTTTTTC
1 TTTTCTTTTC
81128414 TTTTTCTTTTC
1 -TTTTCTTTTC
81128425 TT
1 TT
81128427 CCATTTTTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
8 4 0.09
9 4 0.09
10 15 0.35
11 20 0.47
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.79
Consensus pattern (10 bp):
TTTTCTTTTC
Found at i:81128424 original size:24 final size:24
Alignment explanation
Indices: 81128365--81128427 Score: 74
Period size: 24 Copynumber: 2.5 Consensus size: 24
81128355 CATGTTCTTG
81128365 TTTTCTTTCTTCTTCTTTTCTTTTCT
1 TTTTC-TT-TTCTTCTTTTCTTTTCT
* *
81128391 TTGTT-ATTTCTTCTTTTTTTTTCT
1 TT-TTCTTTTCTTCTTTTCTTTTCT
81128415 TTTTCTTTTCTTC
1 TTTTCTTTTCTTC
81128428 CATTTTTCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
23 2 0.06
24 25 0.78
25 1 0.03
26 2 0.06
27 2 0.06
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.78
Consensus pattern (24 bp):
TTTTCTTTTCTTCTTTTCTTTTCT
Found at i:81129584 original size:12 final size:12
Alignment explanation
Indices: 81129567--81129607 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
81129557 AGGAGATATT
81129567 TGATATGTTATA
1 TGATATGTTATA
* *
81129579 TGATATG--CTC
1 TGATATGTTATA
81129589 TGATATGTTATA
1 TGATATGTTATA
81129601 TGATATG
1 TGATATG
81129608 ATTCTGATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
10 8 0.35
12 15 0.65
ACGTcount: A:0.29, C:0.05, G:0.20, T:0.46
Consensus pattern (12 bp):
TGATATGTTATA
Found at i:81129593 original size:22 final size:23
Alignment explanation
Indices: 81129567--81129652 Score: 104
Period size: 22 Copynumber: 3.8 Consensus size: 23
81129557 AGGAGATATT
*
81129567 TGATATGTTATATGATATG-CTC
1 TGATATGTTATATGATATGATTC
81129589 TGATATGTTATATGATATGATTC
1 TGATATGTTATATGATATGATTC
* * *
81129612 TGATA-GTTAAATAATATGATTT
1 TGATATGTTATATGATATGATTC
* *
81129634 TGATATGCTACATGATATG
1 TGATATGTTATATGATATG
81129653 GGAAATTCTA
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
22 38 0.69
23 17 0.31
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.44
Consensus pattern (23 bp):
TGATATGTTATATGATATGATTC
Found at i:81133321 original size:10 final size:10
Alignment explanation
Indices: 81133291--81133324 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
81133281 AACCCTAATT
*
81133291 TTTTCTTTTCT
1 TTTTC-TTTCC
81133302 TTTTCTTTCC
1 TTTTCTTTCC
81133312 TTTTCTTTCC
1 TTTTCTTTCC
81133322 TTT
1 TTT
81133325 CTATTTCGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 17 0.77
11 5 0.23
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTCTTTCC
Found at i:81133401 original size:13 final size:13
Alignment explanation
Indices: 81133383--81133430 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
81133373 TTCACTTTTA
81133383 ATTATTATATTAT
1 ATTATTATATTAT
*
81133396 ATTATTATATTTT
1 ATTATTATATTAT
*
81133409 AGTAATTATTATTAAT
1 A-TTATTA-TATT-AT
81133425 ATTATT
1 ATTATT
81133431 TACTTATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 13 0.46
14 5 0.18
15 8 0.29
16 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (13 bp):
ATTATTATATTAT
Found at i:81135221 original size:13 final size:13
Alignment explanation
Indices: 81135203--81135230 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81135193 GACCATGCTT
81135203 TCCTTAAGGTACC
1 TCCTTAAGGTACC
81135216 TCCTTAAGGTACC
1 TCCTTAAGGTACC
81135229 TC
1 TC
81135231 GTTACAGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.32
Consensus pattern (13 bp):
TCCTTAAGGTACC
Found at i:81136690 original size:13 final size:13
Alignment explanation
Indices: 81136672--81136699 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81136662 GACCATGCTT
81136672 TCCTTAAGGTACC
1 TCCTTAAGGTACC
81136685 TCCTTAAGGTACC
1 TCCTTAAGGTACC
81136698 TC
1 TC
81136700 GTTACAGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.32
Consensus pattern (13 bp):
TCCTTAAGGTACC
Found at i:81139034 original size:5 final size:5
Alignment explanation
Indices: 81139014--81139079 Score: 55
Period size: 5 Copynumber: 12.8 Consensus size: 5
81139004 CACATTCTTG
* *
81139014 TTTCT TTTCT CCTTCT TTTCT TTTCT TTGT-T ATT-T TTTCTT TTTCT
1 TTTCT TTTCT -TTTCT TTTCT TTTCT TT-TCT TTTCT TTTC-T TTTCT
*
81139060 TTTCT TTTGT TTTGCT TTTC
1 TTTCT TTTCT TTT-CT TTTC
81139080 GCTTCATTGC
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
4 4 0.08
5 32 0.64
6 14 0.28
ACGTcount: A:0.02, C:0.18, G:0.05, T:0.76
Consensus pattern (5 bp):
TTTCT
Found at i:81140292 original size:23 final size:23
Alignment explanation
Indices: 81140208--81140293 Score: 79
Period size: 23 Copynumber: 3.8 Consensus size: 23
81140198 GGATATATAT
* *
81140208 GATATGTTATATGATATGATCT-
1 GATATGCTATATGATATGATTTC
* *
81140230 GATATGCTATGTGATACGA-TTC
1 GATATGCTATATGATATGATTTC
* *
81140252 TGATATG-TGAAATAATATGATTTC
1 -GATATGCT-ATATGATATGATTTC
81140276 GATATGCTATATGATATG
1 GATATGCTATATGATATG
81140294 GGAAATTCTA
Statistics
Matches: 49, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
21 1 0.02
22 17 0.35
23 27 0.55
24 4 0.08
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.41
Consensus pattern (23 bp):
GATATGCTATATGATATGATTTC
Found at i:81151095 original size:31 final size:32
Alignment explanation
Indices: 81151045--81151104 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
81151035 TTAAAAAATA
81151045 ATTAAAATAATATTTTTTTA-TAAAATAAACT
1 ATTAAAATAATATTTTTTTAGTAAAATAAACT
* *
81151076 ATTAAAAT-ATTTATTTTTTAGTATAATAA
1 ATTAAAATAATAT-TTTTTTAGTAAAATAA
81151105 CTTAATTGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 3 0.12
31 15 0.60
32 7 0.28
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (32 bp):
ATTAAAATAATATTTTTTTAGTAAAATAAACT
Found at i:81151378 original size:26 final size:27
Alignment explanation
Indices: 81151338--81151396 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
81151328 ATAATTATTT
*
81151338 TTAAAAATTAGAAATTA-TTAAAATTA
1 TTAAAAAGTAGAAATTATTTAAAATTA
*
81151364 TTAAAAAGTATAAATTATTTTAAAATTA
1 TTAAAAAGTAGAAATTA-TTTAAAATTA
81151392 -TAAAA
1 TTAAAA
81151397 GTTTTAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 15 0.52
27 5 0.17
28 9 0.31
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (27 bp):
TTAAAAAGTAGAAATTATTTAAAATTA
Found at i:81151393 original size:18 final size:17
Alignment explanation
Indices: 81151344--81151395 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
81151334 ATTTTTAAAA
*
81151344 ATTAGAAATTATTAAAATT
1 ATTAAAAATTA-T-AAATT
*
81151363 ATTAAAAAGTATAAATT
1 ATTAAAAATTATAAATT
*
81151380 ATTTTAAAATTATAAA
1 A-TTAAAAATTATAAA
81151396 AGTTTTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 6 0.21
18 13 0.46
19 9 0.32
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (17 bp):
ATTAAAAATTATAAATT
Found at i:81157625 original size:4 final size:4
Alignment explanation
Indices: 81157616--81157652 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
81157606 ACATGTTAAA
*
81157616 TAGT TAGT TAGT TAGT TAGT TAGT TAGT TAGT GAGT T
1 TAGT TAGT TAGT TAGT TAGT TAGT TAGT TAGT TAGT T
81157653 GTCATGCTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (4 bp):
TAGT
Found at i:81157835 original size:28 final size:28
Alignment explanation
Indices: 81157784--81157840 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
81157774 CTTTTTTGAG
**
81157784 TTAATGAAATTCTCTTTGAGTTTTTCTCT
1 TTAATGAAATTCTCTTT-AACTTTTCTCT
*
81157813 TTAA-GAATTTCTCTTTAACTTTTCTCT
1 TTAATGAAATTCTCTTTAACTTTTCTCT
81157840 T
1 T
81157841 AGAAGAGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 10 0.40
28 11 0.44
29 4 0.16
ACGTcount: A:0.21, C:0.16, G:0.07, T:0.56
Consensus pattern (28 bp):
TTAATGAAATTCTCTTTAACTTTTCTCT
Found at i:81157838 original size:13 final size:14
Alignment explanation
Indices: 81157793--81157840 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
81157783 GTTAATGAAA
* *
81157793 TTCTCTTTGAGTTT
1 TTCTCTTTAAGATT
*
81157807 TTCTCTTTAAGAAT
1 TTCTCTTTAAGATT
*
81157821 TTCTCTTTAA-CTT
1 TTCTCTTTAAGATT
81157834 TTCTCTT
1 TTCTCTT
81157841 AGAAGAGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
13 8 0.28
14 21 0.72
ACGTcount: A:0.15, C:0.19, G:0.06, T:0.60
Consensus pattern (14 bp):
TTCTCTTTAAGATT
Found at i:81166435 original size:157 final size:157
Alignment explanation
Indices: 81166149--81166464 Score: 632
Period size: 157 Copynumber: 2.0 Consensus size: 157
81166139 TATTTACACA
81166149 TATTTGACCCATATTTTATTTAATAATTAAAAGCGCAATAAAATTCTAACCAAATTAGATCACTT
1 TATTTGACCCATATTTTATTTAATAATTAAAAGCGCAATAAAATTCTAACCAAATTAGATCACTT
81166214 TTAATTTATGCTAACTTATCATGATAGTAAATAATAACATGTAATTATTCTTATTATATATGTGA
66 TTAATTTATGCTAACTTATCATGATAGTAAATAATAACATGTAATTATTCTTATTATATATGTGA
81166279 TGTCTAAATTTTCCAACACCAAAATCT
131 TGTCTAAATTTTCCAACACCAAAATCT
81166306 TATTTGACCCATATTTTATTTAATAATTAAAAGCGCAATAAAATTCTAACCAAATTAGATCACTT
1 TATTTGACCCATATTTTATTTAATAATTAAAAGCGCAATAAAATTCTAACCAAATTAGATCACTT
81166371 TTAATTTATGCTAACTTATCATGATAGTAAATAATAACATGTAATTATTCTTATTATATATGTGA
66 TTAATTTATGCTAACTTATCATGATAGTAAATAATAACATGTAATTATTCTTATTATATATGTGA
81166436 TGTCTAAATTTTCCAACACCAAAATCT
131 TGTCTAAATTTTCCAACACCAAAATCT
81166463 TA
1 TA
81166465 GACATGATTT
Statistics
Matches: 159, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
157 159 1.00
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.40
Consensus pattern (157 bp):
TATTTGACCCATATTTTATTTAATAATTAAAAGCGCAATAAAATTCTAACCAAATTAGATCACTT
TTAATTTATGCTAACTTATCATGATAGTAAATAATAACATGTAATTATTCTTATTATATATGTGA
TGTCTAAATTTTCCAACACCAAAATCT
Found at i:81174949 original size:60 final size:60
Alignment explanation
Indices: 81174885--81175016 Score: 165
Period size: 61 Copynumber: 2.2 Consensus size: 60
81174875 TGGTTCCAAA
* * ** * * *
81174885 TCTAAAAATTCAACAAATTTAGCTCTTAATGTTTACAAAACTTGTCATTTTAGTTCTGAT
1 TCTAAAAATTCAACAAATTTAGCCCTCAACATTTACAAAACTTGTCAATCTAGTTCTAAT
* * *
81174945 TCTAAAAAATTCAATATATTTAGCCCTCAACATTTACAAAATTTGTCAATCTAGTTCTAAT
1 TCT-AAAAATTCAACAAATTTAGCCCTCAACATTTACAAAACTTGTCAATCTAGTTCTAAT
81175006 TCTAAAAATTC
1 TCTAAAAATTC
81175017 CAAATTAAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
60 11 0.18
61 50 0.82
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.39
Consensus pattern (60 bp):
TCTAAAAATTCAACAAATTTAGCCCTCAACATTTACAAAACTTGTCAATCTAGTTCTAAT
Found at i:81176612 original size:91 final size:92
Alignment explanation
Indices: 81176453--81176725 Score: 395
Period size: 91 Copynumber: 3.0 Consensus size: 92
81176443 TTATCTTCGA
* *
81176453 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTT
1 CATGATGCCATGGTATCTTTCAACTATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTT
*
81176518 TCAACCATGGTCTTATTCATTTCCTGT
66 TCAACCATGGTCTTATTCATTTCATGT
* * *
81176545 CATGTTGCCATGGTATCTTTCAACTATGGTCTTATTCA-TTCCCGTCATGTTGCCATGGTATCTT
1 CATGATGCCATGGTATCTTTCAACTATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTT
* *
81176609 TCAACCATGGTTTTATTCTTTTCATGT
66 TCAACCATGGTCTTATTCATTTCATGT
* * * * * *
81176636 CACGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGTCATGGTATCTT
1 CATGATGCCATGGTATCTTTCAACTATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTT
**
81176701 TCAACCATGGTCTTACACATTTCAT
66 TCAACCATGGTCTTATTCATTTCAT
81176726 TTCAGAAAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
91 81 0.51
92 78 0.49
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (92 bp):
CATGATGCCATGGTATCTTTCAACTATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTT
TCAACCATGGTCTTATTCATTTCATGT
Found at i:81176685 original size:137 final size:137
Alignment explanation
Indices: 81176453--81176715 Score: 393
Period size: 137 Copynumber: 1.9 Consensus size: 137
81176443 TTATCTTCGA
* * *
81176453 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCACGATGCCATGGTATCTT
** * * *
81176518 TCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACTATGGTCTTATTCA
66 TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
81176583 TTCCCGT
131 TTCCCGT
* * * *
81176590 CATGTTGCCATGGTATCTTTCAACCATGGTTTTATTC-TTTTCATGTCACGATGCCATGGTATCT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTC-TGTCACGATGCCATGGTATCT
*
81176654 TTCAACCATGGTCTTACACATTTCATATCATGTTGTCATGGTATCTTTCAACCATGGTCTTA
65 TTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
81176716 CACATTTCAT
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
136 5 0.04
137 107 0.96
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (137 bp):
CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCACGATGCCATGGTATCTT
TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
TTCCCGT
Found at i:81176723 original size:21 final size:21
Alignment explanation
Indices: 81176653--81176724 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 21
81176643 CCATGGTATC
81176653 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
* *
81176674 TTTCATATCATGTTGTCATGGTA-TC-
1 TTTCA-ACCATG--GTC-T--TACACA
81176699 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
81176720 TTTCA
1 TTTCA
81176725 TTTCAGAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 11 0.28
22 8 0.21
24 8 0.21
25 6 0.15
26 1 0.03
27 2 0.05
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.40
Consensus pattern (21 bp):
TTTCAACCATGGTCTTACACA
Found at i:81176723 original size:46 final size:46
Alignment explanation
Indices: 81176453--81176725 Score: 361
Period size: 46 Copynumber: 6.0 Consensus size: 46
81176443 TTATCTTCGA
* * *
81176453 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
* *
81176499 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * **
81176545 CATGTTGCCATGGTATCTTTCAACTATGGTCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
81176590 CATGTTGCCATGGTATCTTTCAACCATGGTTTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * *
81176636 CACGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
81176682 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
81176726 TTCAGAAAGC
Statistics
Matches: 204, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
45 45 0.22
46 159 0.78
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:81178795 original size:11 final size:11
Alignment explanation
Indices: 81178779--81178826 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
81178769 CTTTATATAC
81178779 TAATAAAATAA
1 TAATAAAATAA
*
81178790 TAATAAAATATCT
1 TAATAAAATA--A
* *
81178803 TATTAAAATAT
1 TAATAAAATAA
81178814 TAATAAAATAA
1 TAATAAAATAA
81178825 TA
1 TA
81178827 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:81181660 original size:48 final size:48
Alignment explanation
Indices: 81181547--81181764 Score: 252
Period size: 48 Copynumber: 4.6 Consensus size: 48
81181537 GGTATGATGT
* * * * *
81181547 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT--
1 CGATGCCATGTCCCAGACATAGTCTTACACTAACACATCTAT-ACGTGC
* * *
81181594 CGATGCTATGTCCCAGACATAGTCTTACACTAACACCTCTATATGTGC
1 CGATGCCATGTCCCAGACATAGTCTTACACTAACACATCTATACGTGC
* *
81181642 CGATGCCATGTCCCAGACATAGTCATACACTAACACCTCTATACGTGC
1 CGATGCCATGTCCCAGACATAGTCTTACACTAACACATCTATACGTGC
* * *
81181690 CGATGCCATGTCCCAGACATGGTATTACACTGACACATC--T-CGTAGC
1 CGATGCCATGTCCCAGACATAGTCTTACACTAACACATCTATACGT-GC
81181736 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATAGTCTTACACT
81181765 GGCTTACATC
Statistics
Matches: 152, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
44 9 0.06
45 17 0.11
46 11 0.07
47 36 0.24
48 79 0.52
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATAGTCTTACACTAACACATCTATACGTGC
Found at i:81181774 original size:46 final size:47
Alignment explanation
Indices: 81181691--81181903 Score: 192
Period size: 46 Copynumber: 4.6 Consensus size: 47
81181681 TATACGTGCC
* * *
81181691 GATGCCATGTCCCAGACATGGTATTACACTGAC--ACATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGTAGGCT
81181737 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-AGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAGGCT
* * * *** * *
81181783 AATGCATGTCTCAGACATGTCTTACACTAGCTTTTGTCTC-AATGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAGGCT
* *
81181829 GATGCCATGTCCCAGACATGGTCTTACACCGGCTCT-CATAAT-GT-GGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGTAGGCT
81181877 GATGCATGT-CCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
81181904 AGCGCACAAA
Statistics
Matches: 138, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
44 11 0.08
45 24 0.17
46 63 0.46
47 18 0.13
48 20 0.14
49 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAGGCT
Found at i:81181838 original size:93 final size:92
Alignment explanation
Indices: 81181737--81181906 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 92
81181727 TCTCGTAGCC
* *
81181737 GATGCATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAGGCTAATGCATGTCTCAGAC
1 GATGCATGTCCCAGACATGGTCTTACACCGGCTCT-CATAAT-GAGGCTAATGCATGTC-CAGAC
81181799 ATGTCTTACACTAGCTTTTGTCTCAATGCT
63 ATGTCTTACACTAGCTTTTGTCTCAATGCT
* *
81181829 GATGCCATGTCCCAGACATGGTCTTACACCGGCTCTCATAATGTGGCTGATGCATGTCCAGACAT
1 GATG-CATGTCCCAGACATGGTCTTACACCGGCTCTCATAATGAGGCTAATGCATGTCCAGACAT
81181894 GTCTTACACTAGC
65 GTCTTACACTAGC
81181907 GCACAAATAA
Statistics
Matches: 70, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
92 4 0.06
93 34 0.49
94 30 0.43
95 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGGTCTTACACCGGCTCTCATAATGAGGCTAATGCATGTCCAGACATG
TCTTACACTAGCTTTTGTCTCAATGCT
Found at i:81190989 original size:22 final size:22
Alignment explanation
Indices: 81190946--81190989 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
81190936 ATTTCCAAAT
* *
81190946 GAAATCTCATTCCTATTTATAG
1 GAAATCTCATGCCTATTCATAG
* *
81190968 GAAATTTCATGCCTCTTCATAG
1 GAAATCTCATGCCTATTCATAG
81190990 AGACTTCTTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (22 bp):
GAAATCTCATGCCTATTCATAG
Found at i:81192984 original size:42 final size:42
Alignment explanation
Indices: 81192927--81193008 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
81192917 TATGATTTGT
* *
81192927 AGATTTTGTTATTTTTATTCTTAAAATCAAATTATGCTTAGA
1 AGATTATGTTATTTTTATTCTTAAAATCAAAATATGCTTAGA
* *
81192969 AGATTATGTTGTTTTTATTTTTAAAATCAAAATATGCTTA
1 AGATTATGTTATTTTTATTCTTAAAATCAAAATATGCTTA
81193009 TAGTTCCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.34, C:0.06, G:0.10, T:0.50
Consensus pattern (42 bp):
AGATTATGTTATTTTTATTCTTAAAATCAAAATATGCTTAGA
Found at i:81195120 original size:18 final size:18
Alignment explanation
Indices: 81195097--81195135 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
81195087 ATAATTGATA
*
81195097 TATTTT-AATTATGCTTAT
1 TATTTTGAATAATG-TTAT
81195115 TATTTTGAATAATGTTAT
1 TATTTTGAATAATGTTAT
81195133 TAT
1 TAT
81195136 ACAGAACTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.59
Consensus pattern (18 bp):
TATTTTGAATAATGTTAT
Found at i:81196105 original size:40 final size:41
Alignment explanation
Indices: 81196061--81196150 Score: 128
Period size: 40 Copynumber: 2.2 Consensus size: 41
81196051 TGTTTTGGAA
**
81196061 CACACGGTCGTGTCTGATAGCACACTGGTGTGTGAGA-CCT
1 CACACGGTCGTGTCTGATAGCACACTGACGTGTGAGACCCT
* * *
81196101 CACACTGCCGTGTCTGATGGCACACTGACGTGTGAGACCCT
1 CACACGGTCGTGTCTGATAGCACACTGACGTGTGAGACCCT
81196142 CACACGGTC
1 CACACGGTC
81196151 ATGTTTGCCC
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 32 0.76
41 10 0.24
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (41 bp):
CACACGGTCGTGTCTGATAGCACACTGACGTGTGAGACCCT
Found at i:81196113 original size:20 final size:20
Alignment explanation
Indices: 81196090--81196146 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
81196080 GCACACTGGT
*
81196090 GTGTGAGACCTCACACTGCC
1 GTGTGAGACCTCACACTGAC
** ***
81196110 GTGTCTGATGGCACACTGAC
1 GTGTGAGACCTCACACTGAC
81196130 GTGTGAGACCCTCACAC
1 GTGTGAGA-CCTCACAC
81196147 GGTCATGTTT
Statistics
Matches: 25, Mismatches: 11, Indels: 1
0.68 0.30 0.03
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.21
Consensus pattern (20 bp):
GTGTGAGACCTCACACTGAC
Found at i:81198171 original size:51 final size:51
Alignment explanation
Indices: 81198090--81198192 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
81198080 AAAAACTACT
* *
81198090 TCTACAACATATAGAATATAAAACTATCGTATAAAAGATAAAGTCATAAAA
1 TCTAAAACATATAAAATATAAAACTATCGTATAAAAGATAAAGTCATAAAA
*
81198141 TCTAAAACATATAAAATTTAAAACTATCGTATAAAAGATAAAGTCATAAAA
1 TCTAAAACATATAAAATATAAAACTATCGTATAAAAGATAAAGTCATAAAA
81198192 T
1 T
81198193 TCATACTAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.55, C:0.11, G:0.07, T:0.27
Consensus pattern (51 bp):
TCTAAAACATATAAAATATAAAACTATCGTATAAAAGATAAAGTCATAAAA
Found at i:81198389 original size:5 final size:5
Alignment explanation
Indices: 81198379--81198410 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
81198369 ACCTCTGTGA
81198379 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
81198411 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:81200660 original size:5 final size:5
Alignment explanation
Indices: 81200650--81200681 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
81200640 CAATTTATGA
81200650 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
81200682 GAACATACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:81200675 original size:9 final size:9
Alignment explanation
Indices: 81200651--81200681 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
81200641 AATTTATGAA
81200651 AAATAAAAT
1 AAATAAAAT
81200660 AAAATAAAAT
1 -AAATAAAAT
81200670 AAATAAAAT
1 AAATAAAAT
81200679 AAA
1 AAA
81200682 GAACATACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:81206944 original size:24 final size:24
Alignment explanation
Indices: 81206900--81206959 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
81206890 AGTAAAATTT
*
81206900 TATTTGTAATAAAATAGGTTAGCTG
1 TATTTGT-ATAAAATAGGTTAACTG
*
81206925 TATTTGTATAAATTTA-GTTAACTG
1 TATTTGTATAAA-ATAGGTTAACTG
81206949 TATTTGTATAA
1 TATTTGTATAA
81206960 GTTACTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
24 23 0.72
25 9 0.28
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (24 bp):
TATTTGTATAAAATAGGTTAACTG
Found at i:81208170 original size:15 final size:15
Alignment explanation
Indices: 81208152--81208184 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
81208142 AATAACTATG
81208152 TTCAAA-ATTATGAAT
1 TTCAAATATTAT-AAT
81208167 TTCAAATATTATAAT
1 TTCAAATATTATAAT
81208182 TTC
1 TTC
81208185 TAAACAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.45
Consensus pattern (15 bp):
TTCAAATATTATAAT
Found at i:81210439 original size:13 final size:13
Alignment explanation
Indices: 81210421--81210457 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
81210411 TATATAATGT
81210421 AATAATAATAGAA
1 AATAATAATAGAA
81210434 AATAATAATA-AA
1 AATAATAATAGAA
81210446 AATAAATAATAG
1 AAT-AATAATAG
81210458 GGATAATAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.23
13 17 0.77
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.24
Consensus pattern (13 bp):
AATAATAATAGAA
Found at i:81218305 original size:27 final size:27
Alignment explanation
Indices: 81218275--81218340 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 27
81218265 AAGAATAAAC
* *
81218275 TATATACATAATAGATTTGAAAGGAAA-
1 TATATATATAATAGATTT-AAAAGAAAT
*
81218302 TATAAATATAAATAGATTTAAAAGAAAT
1 TATATATAT-AATAGATTTAAAAGAAAT
81218330 TATATATATAA
1 TATATATATAA
81218341 AATAACATGG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 16 0.48
28 17 0.52
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (27 bp):
TATATATATAATAGATTTAAAAGAAAT
Found at i:81218319 original size:28 final size:28
Alignment explanation
Indices: 81218284--81218341 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
81218274 CTATATACAT
*
81218284 AATAGATTTGAAAGGAAA-TATAAATATA
1 AATAGATTT-AAAAGAAATTATAAATATA
*
81218312 AATAGATTTAAAAGAAATTATATATATA
1 AATAGATTTAAAAGAAATTATAAATATA
81218340 AA
1 AA
81218342 ATAACATGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 7 0.26
28 20 0.74
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.31
Consensus pattern (28 bp):
AATAGATTTAAAAGAAATTATAAATATA
Found at i:81218440 original size:23 final size:26
Alignment explanation
Indices: 81218414--81218468 Score: 62
Period size: 28 Copynumber: 2.2 Consensus size: 26
81218404 ATTTAAATGA
81218414 AATAT-TATACAA-AA-TTTTAAAAC
1 AATATATATACAAGAAGTTTTAAAAC
*
81218437 AATATGATATACAAGAATGTTTTAAAAT
1 AATAT-ATATACAAGAA-GTTTTAAAAC
81218465 AATA
1 AATA
81218469 ATGATATAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 5 0.19
25 7 0.27
26 2 0.08
28 12 0.46
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (26 bp):
AATATATATACAAGAAGTTTTAAAAC
Found at i:81219232 original size:13 final size:13
Alignment explanation
Indices: 81219214--81219240 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81219204 CATGCGAAAG
81219214 AGGAAAACTAAAA
1 AGGAAAACTAAAA
81219227 AGGAAAACTAAAA
1 AGGAAAACTAAAA
81219240 A
1 A
81219241 CATTTAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.15, T:0.07
Consensus pattern (13 bp):
AGGAAAACTAAAA
Found at i:81222318 original size:26 final size:26
Alignment explanation
Indices: 81222289--81222432 Score: 234
Period size: 26 Copynumber: 5.5 Consensus size: 26
81222279 TGGTACAAAT
81222289 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81222315 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81222341 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81222367 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81222393 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81222419 TGGTAATGGTTTAG
1 TGATAATGGGTTAG
81222433 ATACCATTGG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 108 1.00
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81222351 original size:52 final size:52
Alignment explanation
Indices: 81222289--81222432 Score: 270
Period size: 52 Copynumber: 2.8 Consensus size: 52
81222279 TGGTACAAAT
81222289 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
81222341 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
81222393 TGATAATGGGTTAGGTAAATGTTCCATGGTAATGGTTTAG
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAG
81222433 ATACCATTGG
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 90 1.00
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.35
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:81222921 original size:26 final size:26
Alignment explanation
Indices: 81222892--81223035 Score: 243
Period size: 26 Copynumber: 5.5 Consensus size: 26
81222882 TGGTACAAAT
81222892 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81222918 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81222944 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81222970 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81222996 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81223022 TGATAATGGTTTAG
1 TGATAATGGGTTAG
81223036 ATACCATTGG
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 109 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81222954 original size:52 final size:52
Alignment explanation
Indices: 81222892--81223035 Score: 279
Period size: 52 Copynumber: 2.8 Consensus size: 52
81222882 TGGTACAAAT
81222892 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
81222944 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
*
81222996 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAG
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAG
81223036 ATACCATTGG
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 91 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:81222971 original size:603 final size:603
Alignment explanation
Indices: 81221827--81224230 Score: 4430
Period size: 603 Copynumber: 3.9 Consensus size: 603
81221817 CCTATTTTAC
*
81221827 TAGATACCATTGGTCAACAGAGGTTCGATCATGCTGAGGGGTTGAAACTGTTTTGTTTTGAGGCT
1 TAGATACCATTGGTCAACAGAGGTTCGATCATGCTGAGGGGTTGAAACTGTTTCGTTTTGAGGCT
81221892 AGTTGGTGCCTTGAGAACTAATTTGAGAAGATACTTAAAAGAAAATAGGAATCGCTAACAGGGAG
66 AGTTGGTGCCTTGAGAACTAATTTGAGAAGATACTTAAAAGAAAATAGGAATCGCTAACAGGGAG
* *
81221957 TGTGCCGAGTAAGCTTGAGCTTTTGGGTCGACATTGTAACGCCCCAATTTTTGGGAATTCTGTGA
131 TGTGCCGAGTAAGCTTGAGCTTTTGGGTCAACATTGTAACGCCCCAATTTTCGGGAATTCTGTGA
81222022 ATGTTGGCATAGGTTTAATTATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGATAGAACCCGA
196 ATGTTGGCATAGGTTTAATTATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGATAGAACCCGA
*
81222087 CAATTTTAGTTAATTTTTGTTCTTTAAGAAAAAGGGGGTGAAATTATGAAATATGACCTATGTGA
261 CAATTTTAGTTAATTTTTGTTCTTTAAGAAAAAGGGGGTGAAATTATGAAATAGGACCTATGTGA
*
81222152 AAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATAAGAGG
326 AAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATAGGAGG
81222217 ATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAGAGCACTTGATATCCATAATTCATGG
391 ATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAGAGCACTTGATATCCATAATTCATGG
81222282 TACAAATTGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAA
456 TACAAATTGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAA
81222347 TGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAA
521 TGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAA
*
81222412 TGTTCCATGGTAATGGTT
586 TGTTCCATGATAATGGTT
*
81222430 TAGATACCATTGGTCAACAGAGGTTCGATCATGCTGAGGGGTTGAACCTGTTTCGTTTTGAGGCT
1 TAGATACCATTGGTCAACAGAGGTTCGATCATGCTGAGGGGTTGAAACTGTTTCGTTTTGAGGCT
81222495 AGTTGGTGCCTTGAGAACTAATTTGAGAAGATACTTAAAAGAAAATAGGAATCGCTAACAGGGAG
66 AGTTGGTGCCTTGAGAACTAATTTGAGAAGATACTTAAAAGAAAATAGGAATCGCTAACAGGGAG
*
81222560 TGTGCCGAGTAAGCTTGAGCTTTTGGGTCAACATTGTAACGCCCCAATTTTCGGGAACTCTGTGA
131 TGTGCCGAGTAAGCTTGAGCTTTTGGGTCAACATTGTAACGCCCCAATTTTCGGGAATTCTGTGA
81222625 ATGTTGGCATAGGTTTAATTATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGATAGAACCCGA
196 ATGTTGGCATAGGTTTAATTATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGATAGAACCCGA
81222690 CAATTTTAGTTAATTTTTGTTCTTTAAGAAAAAGGGGGTGAAATTATGAAATAGGACCTATGTGA
261 CAATTTTAGTTAATTTTTGTTCTTTAAGAAAAAGGGGGTGAAATTATGAAATAGGACCTATGTGA
*
81222755 AAATGTTTGAAAATGCTATAGGCTAAATTAAAGTGGCCAAATAAATAGGAGTGCAAAATAGGAGG
326 AAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATAGGAGG
81222820 ATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAGAGCACTTGATATCCATAATTCATGG
391 ATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAGAGCACTTGATATCCATAATTCATGG
81222885 TACAAATTGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAA
456 TACAAATTGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAA
81222950 TGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAA
521 TGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAA
81223015 TGTTCCATGATAATGGTT
586 TGTTCCATGATAATGGTT
*
81223033 TAGATACCATTGGTTAACAGAGGTTCGATCATGCTGAGGGGTTGAAACTGTTTCGTTTTGAGGCT
1 TAGATACCATTGGTCAACAGAGGTTCGATCATGCTGAGGGGTTGAAACTGTTTCGTTTTGAGGCT
81223098 AGTTGGTGCCTTGAGAACTAATTTGAGAAGATACTTAAAAGAAAATAGGAATCGCTAACAGGGAG
66 AGTTGGTGCCTTGAGAACTAATTTGAGAAGATACTTAAAAGAAAATAGGAATCGCTAACAGGGAG
81223163 TGTGCCGAGTAAGCTTGAGCTTTTGGGTCAACATTGTAACGCCCCAATTTTCGGGAATTCTGTGA
131 TGTGCCGAGTAAGCTTGAGCTTTTGGGTCAACATTGTAACGCCCCAATTTTCGGGAATTCTGTGA
81223228 ATGTTGGCATAGGTTTAATTATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGATAGAACCCGA
196 ATGTTGGCATAGGTTTAATTATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGATAGAACCCGA
81223293 CAATTTTAGTTAATTTTTGTTCTTTAAGAAAAAGGGGGTGAAATTATGAAATAGGACCTATGTGA
261 CAATTTTAGTTAATTTTTGTTCTTTAAGAAAAAGGGGGTGAAATTATGAAATAGGACCTATGTGA
81223358 AAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATAGGAGG
326 AAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATAGGAGG
81223423 ATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAGAGCACTTGATATCCATAATTCATGG
391 ATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAGAGCACTTGATATCCATAATTCATGG
*
81223488 TACAAATTGATAATGTGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAA
456 TACAAATTGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAA
*
81223553 TGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTTCATGATAATGGGTTAGGTAAA
521 TGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAA
81223618 TGTTCCATGATAATGGTT
586 TGTTCCATGATAATGGTT
81223636 TAGATACCATTGGTCAACAGAGGTTCGATCATGCTGAGGGGTTGAAACTGTTTCGTTTTGAGGCT
1 TAGATACCATTGGTCAACAGAGGTTCGATCATGCTGAGGGGTTGAAACTGTTTCGTTTTGAGGCT
81223701 AGTTGGTGCCTTGAGAACTAATTTGAGAAGATACTTAAAAGAAAATAGGAATCGCTAACAGGGAG
66 AGTTGGTGCCTTGAGAACTAATTTGAGAAGATACTTAAAAGAAAATAGGAATCGCTAACAGGGAG
*
81223766 TGTGCCGAGTAAGCTTGAGCTTTTGGGTCGACATTGTAACGCCCCAATTTTCGGGAATTCTGTGA
131 TGTGCCGAGTAAGCTTGAGCTTTTGGGTCAACATTGTAACGCCCCAATTTTCGGGAATTCTGTGA
81223831 ATGTTGGCATAGGTTTAATTATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGATAGAACCCGA
196 ATGTTGGCATAGGTTTAATTATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGATAGAACCCGA
**
81223896 CAATTTTAGTTAATTTTTGTTCTTTAAGAAAAAGGGGGTGAAATTATGAAATATAACCTATGTGA
261 CAATTTTAGTTAATTTTTGTTCTTTAAGAAAAAGGGGGTGAAATTATGAAATAGGACCTATGTGA
81223961 AAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATAGGAGG
326 AAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATAGGAGG
81224026 ATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAGCCATCATGTTGTTATAGACAATATG
391 ATTTGCATGACAAACCTCCCATTTTACATGAAGT-G---G----C-------------C---A-G
81224091 AGCACTTGATATCCATAATTCATGGTACAAATTGATAATGGGTTAGGTAAATGTTCCATGATAAT
431 AGCACTTGATATCCATAATTCATGGTACAAATTGATAATGGGTTAGGTAAATGTTCCATGATAAT
*
81224156 GGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAAT
496 GGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAAT
*
81224221 GTTCCATGAT
561 ATTCCATGAT
81224231 TGGCATTTCA
Statistics
Matches: 1753, Mismatches: 23, Indels: 25
0.97 0.01 0.01
Matches are distributed among these distances:
603 1611 0.92
604 1 0.00
607 1 0.00
611 1 0.00
624 1 0.00
627 1 0.00
628 137 0.08
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (603 bp):
TAGATACCATTGGTCAACAGAGGTTCGATCATGCTGAGGGGTTGAAACTGTTTCGTTTTGAGGCT
AGTTGGTGCCTTGAGAACTAATTTGAGAAGATACTTAAAAGAAAATAGGAATCGCTAACAGGGAG
TGTGCCGAGTAAGCTTGAGCTTTTGGGTCAACATTGTAACGCCCCAATTTTCGGGAATTCTGTGA
ATGTTGGCATAGGTTTAATTATGTTAGTGGGCCTCTAGAAGGCCCAAGCTTAAGATAGAACCCGA
CAATTTTAGTTAATTTTTGTTCTTTAAGAAAAAGGGGGTGAAATTATGAAATAGGACCTATGTGA
AAATGTTTGAAAATGCTATAGGCTAAATTGAAGTGGCCAAATAAATAGGAGTGCAAAATAGGAGG
ATTTGCATGACAAACCTCCCATTTTACATGAAGTGGCCAGAGCACTTGATATCCATAATTCATGG
TACAAATTGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAA
TGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAA
TGTTCCATGATAATGGTT
Found at i:81223560 original size:52 final size:52
Alignment explanation
Indices: 81223495--81223638 Score: 261
Period size: 52 Copynumber: 2.8 Consensus size: 52
81223485 TGGTACAAAT
*
81223495 TGATAATGTGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
*
81223547 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
*
81223599 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAG
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAG
81223639 ATACCATTGG
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 89 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:81223638 original size:26 final size:26
Alignment explanation
Indices: 81223495--81223638 Score: 218
Period size: 26 Copynumber: 5.5 Consensus size: 26
81223485 TGGTACAAAT
81223495 TGATAATGTG-TTAGGTAAATGTTCCA
1 TGATAATG-GATTAGGTAAATGTTCCA
*
81223521 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
81223547 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
81223573 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
81223599 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
81223625 TGATAATGGTTTAG
1 TGATAATGGATTAG
81223639 ATACCATTGG
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
25 1 0.01
26 106 0.99
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:81224152 original size:26 final size:26
Alignment explanation
Indices: 81224123--81224230 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
81224113 TGGTACAAAT
81224123 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81224149 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81224175 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81224201 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81224227 TGAT
1 TGAT
81224231 TGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81225869 original size:27 final size:27
Alignment explanation
Indices: 81225829--81225969 Score: 164
Period size: 27 Copynumber: 5.2 Consensus size: 27
81225819 AGGAAATATC
*
81225829 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
81225856 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
81225882 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
81225910 CTGGTGGCTCTACCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
81225937 ATGGTGGCTCTGCCATAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
81225964 CTGGTG
1 CTGGTG
81225970 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
26 11 0.11
27 82 0.85
28 4 0.04
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:81225902 original size:54 final size:54
Alignment explanation
Indices: 81225827--81225969 Score: 225
Period size: 54 Copynumber: 2.6 Consensus size: 54
81225817 GGAGGAAATA
*
81225827 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTG
81225881 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTG
** * *
81225935 TTATGGTGGCTCTGCCATAA-TATCTGTATCTGGTG
1 TCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
81225970 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 6 0.07
54 77 0.93
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTG
Found at i:81225981 original size:81 final size:80
Alignment explanation
Indices: 81225829--81225986 Score: 187
Period size: 81 Copynumber: 2.0 Consensus size: 80
81225819 AGGAAATATC
* * *
81225829 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATACCACAATTATCTGATATGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
81225894 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * *
81225910 CTGGTGGCTCTACCAC-ATATATCTGTTATGGTGGCTCTGCCATA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATACCACAAT-TATCTGATATGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
81225973 -TCGTCACAATATCT
64 AT-GCCACAATATCT
81225987 AGCAGCCTCG
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
80 16 0.24
81 50 0.76
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATACCACAATTATCTGATATGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:81244767 original size:25 final size:25
Alignment explanation
Indices: 81244708--81244767 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
81244698 AACCACGCCT
* *
81244708 TTGTGGTGAACTCTCTATAAAGCCC
1 TTGTGGCGAACTCTCTATAAAGCCA
* * * *
81244733 TTATGACGAACTCTCTGTAAAGTCA
1 TTGTGGCGAACTCTCTATAAAGCCA
81244758 TTGTGGCGAA
1 TTGTGGCGAA
81244768 TTCTTTGAAA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (25 bp):
TTGTGGCGAACTCTCTATAAAGCCA
Found at i:81249007 original size:44 final size:44
Alignment explanation
Indices: 81248959--81249064 Score: 140
Period size: 44 Copynumber: 2.4 Consensus size: 44
81248949 GTCTGCTCTG
*
81248959 CTGCAATTTCAGGGAGATGAGGTTATTGGCTTCAATCTACTCCA
1 CTGCAACTTCAGGGAGATGAGGTTATTGGCTTCAATCTACTCCA
* ** *
81249003 CTGCAACTTCAGGGAGATGAGGTTGTTGGCTTTTATCTGCTCCA
1 CTGCAACTTCAGGGAGATGAGGTTATTGGCTTCAATCTACTCCA
* * *
81249047 CCGCAACTTTAGGAAGAT
1 CTGCAACTTCAGGGAGAT
81249065 AAGATCCGCC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 54 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.31
Consensus pattern (44 bp):
CTGCAACTTCAGGGAGATGAGGTTATTGGCTTCAATCTACTCCA
Found at i:81249201 original size:44 final size:44
Alignment explanation
Indices: 81249123--81249344 Score: 137
Period size: 44 Copynumber: 4.8 Consensus size: 44
81249113 GTCTACTATC
* * * * *
81249123 TTCAGTCTACTCCACTGTAACTTTAGGGAGATAAGGCTGGTGGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGGCTGGTGGT
* * * *
81249167 TTCAATCTGCTTCACTGCAACTTCAGGAAAATAAGATCTGCCATAATTTGTAGCT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAAATAAG----G-C-----TGGT-GGT
* ** *
81249222 TT-AATCTGTTCCACTGCAA-TGTCAGGGAAATAAGATTCGCT-GT
1 TTCAATCTGCTCCACTGCAACT-TCAGGGAAATAAGGCT-GGTGGT
* * *
81249265 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAAATAAGGCTGGTGGC
1 -TTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGGCTGGTGGT
81249310 TTCAATCTGCTCCACTGCAACTTCA-GGAAGATAAG
1 TTCAATCTGCTCCACTGCAACTTCAGGGAA-ATAAG
81249345 ATTCGCTATC
Statistics
Matches: 134, Mismatches: 26, Indels: 36
0.68 0.13 0.18
Matches are distributed among these distances:
43 5 0.04
44 61 0.46
45 30 0.22
46 1 0.01
48 1 0.01
49 1 0.01
53 1 0.01
54 30 0.22
55 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (44 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGGCTGGTGGT
Found at i:81249299 original size:45 final size:45
Alignment explanation
Indices: 81249226--81249389 Score: 165
Period size: 45 Copynumber: 3.7 Consensus size: 45
81249216 GTAGCTTTAA
*
81249226 TCTGTTCCACTGCAA-TGTCAGGGAAATAAGATTCGCTGTCTTCAG
1 TCTGCTCCACTGCAACT-TCAGGGAAATAAGATTCGCTGTCTTCAG
* ** * * *
81249271 TCTGCTCCGCTGCAACTTCAGGGAAATAAGGCT-GGTGGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTGTCTTCAG
*
81249315 TCTGCTCCACTGCAACTTCA-GGAAGATAAGATTCGCTATCTTC-G
1 TCTGCTCCACTGCAACTTCAGGGAA-ATAAGATTCGCTGTCTTCAG
* * * *
81249359 ATCTGCTCCATTGCAGCTTCAAGGAGATAAG
1 -TCTGCTCCACTGCAACTTCAGGGAAATAAG
81249390 GGCTACAACT
Statistics
Matches: 97, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
43 4 0.04
44 33 0.34
45 56 0.58
46 4 0.04
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTGTCTTCAG
Found at i:81249344 original size:89 final size:89
Alignment explanation
Indices: 81249219--81249390 Score: 224
Period size: 89 Copynumber: 1.9 Consensus size: 89
81249209 ATAATTTGTA
* * * *
81249219 GCTTTAATCTGTTCCACTGCAATGTCAGGGAAATAAGATTCGCTGTCTTC-AGTCTGCTCCGCTG
1 GCTTCAATCTGCTCCACTGCAATGTCAGGGAAATAAGATTCGCTATCTTCGA-TCTGCTCCACTG
*
81249283 CAACTTCAGGGAAATAAGGCTGGTG
65 CAACTTCAAGGAAATAAGGCTGGTG
*
81249308 GCTTCAATCTGCTCCACTGCAACT-TCA-GGAAGATAAGATTCGCTATCTTCGATCTGCTCCATT
1 GCTTCAATCTGCTCCACTGCAA-TGTCAGGGAA-ATAAGATTCGCTATCTTCGATCTGCTCCACT
* *
81249371 GCAGCTTCAAGGAGATAAGG
64 GCAACTTCAAGGAAATAAGG
81249391 GCTACAACTT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
88 4 0.06
89 66 0.92
90 2 0.03
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (89 bp):
GCTTCAATCTGCTCCACTGCAATGTCAGGGAAATAAGATTCGCTATCTTCGATCTGCTCCACTGC
AACTTCAAGGAAATAAGGCTGGTG
Found at i:81250353 original size:13 final size:13
Alignment explanation
Indices: 81250337--81250376 Score: 57
Period size: 12 Copynumber: 3.2 Consensus size: 13
81250327 CATCCTGGCC
81250337 TTTCCTTTTTCTT
1 TTTCCTTTTTCTT
81250350 TTTCCTTTTT-TT
1 TTTCCTTTTTCTT
*
81250362 TTT-GTTTTTCTT
1 TTTCCTTTTTCTT
81250374 TTT
1 TTT
81250377 TTCTTCTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 5 0.20
12 10 0.40
13 10 0.40
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (13 bp):
TTTCCTTTTTCTT
Found at i:81250359 original size:1 final size:1
Alignment explanation
Indices: 81250355--81250437 Score: 58
Period size: 1 Copynumber: 83.0 Consensus size: 1
81250345 TTCTTTTTCC
* * * * * * * * * *
81250355 TTTTTTTTTTGTTTTTCTTTTTTTCTTCTTTTTTTGTTTTTCTTTTGTTTTTTGTTTTTCTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
81250420 TTTTTTTGTTTTTCTTTT
1 TTTTTTTTTTTTTTTTTT
81250438 GTTAGTGAAG
Statistics
Matches: 58, Mismatches: 24, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 58 1.00
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.86
Consensus pattern (1 bp):
T
Found at i:81250363 original size:18 final size:17
Alignment explanation
Indices: 81250342--81250437 Score: 83
Period size: 18 Copynumber: 5.6 Consensus size: 17
81250332 TGGCCTTTCC
81250342 TTTTTCTTTTTCCTTTTT
1 TTTTTCTTTTT-CTTTTT
*
81250360 TTTTTGTTTTTCTTTTT
1 TTTTTCTTTTTCTTTTT
* *
81250377 TTCTTC--TTT-TTTTG
1 TTTTTCTTTTTCTTTTT
81250391 TTTTTCTTTTGT-TTTTT
1 TTTTTCTTTT-TCTTTTT
*
81250408 GTTTTTCTTTTGTTTTTTT
1 -TTTTTCTTTT-TCTTTTT
81250427 GTTTTTCTTTT
1 -TTTTTCTTTT
81250438 GTTAGTGAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
14 9 0.13
15 3 0.04
16 2 0.03
17 15 0.22
18 22 0.33
19 16 0.24
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.84
Consensus pattern (17 bp):
TTTTTCTTTTTCTTTTT
Found at i:81250369 original size:11 final size:11
Alignment explanation
Indices: 81250355--81250440 Score: 73
Period size: 11 Copynumber: 7.2 Consensus size: 11
81250345 TTCTTTTTCC
81250355 TTTTTTTTTTG
1 TTTTTTTTTTG
*
81250366 TTTTTCTTTTTT
1 TTTTT-TTTTTG
81250378 TCTTCTTTTTTTG
1 T-TT-TTTTTTTG
*
81250391 TTTTTCTTTTG
1 TTTTTTTTTTG
*
81250402 TTTTTTGTTTTTCT
1 -TTTTT-TTTTT-G
81250416 TTTGTTTTTTTG
1 TTT-TTTTTTTG
*
81250428 TTTTTCTTTTG
1 TTTTTTTTTTG
81250439 TT
1 TT
81250441 AGTGAAGTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
11 21 0.34
12 16 0.26
13 20 0.33
14 4 0.07
ACGTcount: A:0.00, C:0.07, G:0.08, T:0.85
Consensus pattern (11 bp):
TTTTTTTTTTG
Found at i:81250373 original size:24 final size:24
Alignment explanation
Indices: 81250342--81250400 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 24
81250332 TGGCCTTTCC
*
81250342 TTTTTCTTTTTCCTTTTTTTTTTG
1 TTTTTCTTTTTCCTTCTTTTTTTG
*
81250366 TTTTTCTTTTTTTCTTCTTTTTTTG
1 TTTTTC-TTTTTCCTTCTTTTTTTG
81250391 TTTTTCTTTT
1 TTTTTCTTTT
81250401 GTTTTTTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 10 0.31
25 22 0.69
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.85
Consensus pattern (24 bp):
TTTTTCTTTTTCCTTCTTTTTTTG
Found at i:81250389 original size:43 final size:43
Alignment explanation
Indices: 81250342--81250437 Score: 135
Period size: 43 Copynumber: 2.2 Consensus size: 43
81250332 TGGCCTTTCC
81250342 TTTTTCTTTTTCCTTTT-TTTTTTGTTTTTCTTTT-TTTCTTCTT-
1 TTTTTCTTTTT-CTTTTGTTTTTTGTTTTTCTTTTGTTT-TT-TTG
*
81250385 TTTTTGTTTTTCTTTTGTTTTTTGTTTTTCTTTTGTTTTTTTG
1 TTTTTCTTTTTCTTTTGTTTTTTGTTTTTCTTTTGTTTTTTTG
81250428 TTTTTCTTTT
1 TTTTTCTTTT
81250438 GTTAGTGAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
42 7 0.15
43 38 0.79
44 3 0.06
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.84
Consensus pattern (43 bp):
TTTTTCTTTTTCTTTTGTTTTTTGTTTTTCTTTTGTTTTTTTG
Found at i:81250407 original size:37 final size:37
Alignment explanation
Indices: 81250343--81250440 Score: 114
Period size: 37 Copynumber: 2.7 Consensus size: 37
81250333 GGCCTTTCCT
*
81250343 TTTTCTTTTTCCTT-TTTTT-TT-TGTTTT-TCTTTTTT
1 TTTTCTTTTT--TTGTTTTTCTTTTGTTTTTTCTTTTTC
* *
81250378 TCTTCTTTTTTTGTTTTTCTTTTGTTTTTTGTTTTTC
1 TTTTCTTTTTTTGTTTTTCTTTTGTTTTTTCTTTTTC
*
81250415 TTTTGTTTTTTTGTTTTTCTTTTGTT
1 TTTTCTTTTTTTGTTTTTCTTTTGTT
81250441 AGTGAAGTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
33 2 0.04
34 5 0.09
35 11 0.20
36 6 0.11
37 30 0.56
ACGTcount: A:0.00, C:0.09, G:0.07, T:0.84
Consensus pattern (37 bp):
TTTTCTTTTTTTGTTTTTCTTTTGTTTTTTCTTTTTC
Found at i:81250412 original size:25 final size:23
Alignment explanation
Indices: 81250342--81250440 Score: 101
Period size: 24 Copynumber: 4.1 Consensus size: 23
81250332 TGGCCTTTCC
*
81250342 TTTTTCTTTTTCCTTTTTTTTTTG
1 TTTTTCTTTTT-TTTTTTTTTTTG
81250366 TTTTTCTTTTTTTCTTCTTTTTTTG
1 TTTTTCTTTTTTT-TT-TTTTTTTG
* *
81250391 TTTTTCTTTTGTTTTTTGTTTTTC
1 TTTTTCTTTT-TTTTTTTTTTTTG
*
81250415 TTTTGT-TTTTTTGTTTTTCTTTTG
1 TTTT-TCTTTTTT-TTTTTTTTTTG
81250439 TT
1 TT
81250441 AGTGAAGTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
23 3 0.05
24 37 0.58
25 21 0.33
26 3 0.05
ACGTcount: A:0.00, C:0.09, G:0.07, T:0.84
Consensus pattern (23 bp):
TTTTTCTTTTTTTTTTTTTTTTG
Found at i:81258348 original size:25 final size:25
Alignment explanation
Indices: 81258292--81258339 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
81258282 CTTGTGACAC
81258292 CTATCCCCCAAGGGACTTGAAATAA
1 CTATCCCCCAAGGGACTTGAAATAA
* *
81258317 CGATCCCCCAAGGGATTTGAAAT
1 CTATCCCCCAAGGGACTTGAAAT
81258340 GTTTATCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (25 bp):
CTATCCCCCAAGGGACTTGAAATAA
Found at i:81262227 original size:10 final size:11
Alignment explanation
Indices: 81262208--81262240 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
81262198 TTGATATGTT
81262208 AATGAAGAGAA
1 AATGAAGAGAA
81262219 AAT-AAGAGAA
1 AATGAAGAGAA
*
81262229 AGTGAAGAGAA
1 AATGAAGAGAA
81262240 A
1 A
81262241 TAGTGTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (11 bp):
AATGAAGAGAA
Found at i:81263942 original size:46 final size:46
Alignment explanation
Indices: 81263894--81264115 Score: 311
Period size: 46 Copynumber: 4.8 Consensus size: 46
81263884 GCTCTCTGAT
** * *
81263894 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
81263940 ATGAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
81263986 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
81264032 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
81264078 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGC
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGC
81264116 GTCATGTCAA
Statistics
Matches: 157, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 156 0.99
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.19
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:81264053 original size:92 final size:92
Alignment explanation
Indices: 81263904--81264115 Score: 352
Period size: 92 Copynumber: 2.3 Consensus size: 92
81263894 ATGAAATGTG
* *
81263904 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAACGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
* *
81263969 TACCATGGCAACATGACGGGAAATGAA
66 TACCATGGCAACATGACAGAAAATGAA
81263996 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
*
81264061 TACCATGGCAACATGACAGAAAATGAG
66 TACCATGGCAACATGACAGAAAATGAA
* * *
81264088 TAAGACCATAGTTGAAAGACACTATGGC
1 TAAGACCATGGTTGAAAGATACCATGGC
81264116 GTCATGTCAA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
92 112 1.00
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACAGAAAATGAA
Found at i:81265012 original size:47 final size:47
Alignment explanation
Indices: 81264938--81265070 Score: 180
Period size: 46 Copynumber: 2.9 Consensus size: 47
81264928 TGTTACAGAG
*
81264938 GCATCCGAACTCGTTGAGTTGCATTCCGAGTTCACCTATGGATGC-AA
1 GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCA-CTATGGATGCGAA
* * *
81264985 GCATCCAAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGCGAA
1 GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCACTATGGATGCGAA
* * *
81265032 -CACCCGAGCTCGTTGAGTTGCGTTCCGAGTTCATTATGG
1 GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCACTATGG
81265071 GTGAGATTAT
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
46 44 0.57
47 33 0.43
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCACTATGGATGCGAA
Found at i:81267863 original size:25 final size:24
Alignment explanation
Indices: 81267833--81267879 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
81267823 TAAATTCTTA
81267833 ATTTG-ATTTATTATTTTAAAAATAT
1 ATTTGAATTT-TT-TTTTAAAAATAT
*
81267858 ATTTGAATTTTTTTTTGAAAAT
1 ATTTGAATTTTTTTTTAAAAAT
81267880 TTCATATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 7 0.35
26 4 0.20
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.57
Consensus pattern (24 bp):
ATTTGAATTTTTTTTTAAAAATAT
Found at i:81270550 original size:3 final size:3
Alignment explanation
Indices: 81270542--81270576 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
81270532 CTATCAAAAA
* *
81270542 ATT ATT ATT ATT ATT CTT ATT ATT GTT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
81270577 AAAATTTATG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:81271815 original size:15 final size:14
Alignment explanation
Indices: 81271791--81271824 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
81271781 ATCCCACCCC
81271791 ATATACATATACAG
1 ATATACATATACAG
*
81271805 AATATAGATATACAG
1 -ATATACATATACAG
81271820 ATATA
1 ATATA
81271825 ACAGAGTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.29
Consensus pattern (14 bp):
ATATACATATACAG
Found at i:81275273 original size:13 final size:13
Alignment explanation
Indices: 81275255--81275281 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81275245 GAACTAAAGA
81275255 TTCACCCCTCAAT
1 TTCACCCCTCAAT
81275268 TTCACCCCTCAAT
1 TTCACCCCTCAAT
81275281 T
1 T
81275282 GTTTATCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.44, G:0.00, T:0.33
Consensus pattern (13 bp):
TTCACCCCTCAAT
Found at i:81281818 original size:44 final size:44
Alignment explanation
Indices: 81281750--81281838 Score: 126
Period size: 44 Copynumber: 2.0 Consensus size: 44
81281740 ATTACATGTA
* * * *
81281750 TCGCATCCATTATGAGCTCGGACCAACTCAACGAGCT-GAGATGC
1 TCGCATCCATAATAAACTCAGACCAACTCAACGAGCTCG-GATGC
81281794 TCGCATCCATAATAAACTCAGACCAACTCAACGAGCTCGGATGC
1 TCGCATCCATAATAAACTCAGACCAACTCAACGAGCTCGGATGC
81281838 T
1 T
81281839 TCACATATAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 39 0.98
45 1 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.20
Consensus pattern (44 bp):
TCGCATCCATAATAAACTCAGACCAACTCAACGAGCTCGGATGC
Found at i:81281912 original size:45 final size:45
Alignment explanation
Indices: 81281808--81281929 Score: 113
Period size: 45 Copynumber: 2.7 Consensus size: 45
81281798 ATCCATAATA
* * ** *
81281808 AACTCAGACCAACTCAACGAGCTCGGA-TGCTTCACATATACCACG
1 AACTCAAACCAACTCAACAAGCTTAGATTTC-TCACATATACCACG
*** *
81281853 AACTTGGACCAACTCAACAAG-TTAGAATTTCTCACATATATCACG
1 AACTCAAACCAACTCAACAAGCTTAG-ATTTCTCACATATACCACG
* *
81281898 AACTCAAACGAACTCAACGAGCTTAGATTTCT
1 AACTCAAACCAACTCAACAAGCTTAGATTTCT
81281930 TAATTCCTAG
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
44 2 0.03
45 54 0.87
46 6 0.10
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (45 bp):
AACTCAAACCAACTCAACAAGCTTAGATTTCTCACATATACCACG
Found at i:81283724 original size:18 final size:17
Alignment explanation
Indices: 81283701--81283744 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
81283691 CAAAATTTTA
*
81283701 GGCCCACATGCCCGTGTT
1 GGCCCACATGCCCATG-T
* *
81283719 GGCCCACACGCTCATGT
1 GGCCCACATGCCCATGT
81283736 GGCCCACAT
1 GGCCCACAT
81283745 CGCCTAGACT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.16, C:0.41, G:0.25, T:0.18
Consensus pattern (17 bp):
GGCCCACATGCCCATGT
Found at i:81284973 original size:23 final size:23
Alignment explanation
Indices: 81284934--81284983 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
81284924 TCATCTTAAA
*
81284934 AAAATCTACCATAATTTT-TTTT
1 AAAATCTACCATAATTTTCTTCT
* *
81284956 AAAATACTATCATTATTTTCTTCT
1 AAAAT-CTACCATAATTTTCTTCT
81284980 AAAA
1 AAAA
81284984 GATACTACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 5 0.22
23 11 0.48
24 7 0.30
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (23 bp):
AAAATCTACCATAATTTTCTTCT
Found at i:81288955 original size:131 final size:130
Alignment explanation
Indices: 81288714--81289098 Score: 432
Period size: 131 Copynumber: 2.9 Consensus size: 130
81288704 TCATTCATTC
* * * * *
81288714 AAAATTCTTCAAAACGAAGACGAGATTTGATGTTTGACAATTCGCGGAATCGTGCCCTAACATTT
1 AAAATTTTTCAAAACGAAGGCGAGATTTGATATTTG-CAATTCGCGGAATCGTGCCCTAACGTGT
* * * * * **
81288779 TAGGTTGCAATTTCGCATTTACTCAAAATAATCGAATATCGCTTCAAAATTTCACTCATGTCTTT
65 TGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATCCCTTT
81288844 T
130 T
* * * *
81288845 AAAATTTTTCGAAACGAAGGCGAGATTCGATATTTAGCAATTCGCAGAATTGTGCCCTAACGTGT
1 AAAATTTTTCAAAACGAAGGCGAGATTTGATATTT-GCAATTCGCGGAATCGTGCCCTAACGTGT
* * * *
81288910 TGGGTTGCAATTTCTTGTTTGCTCTAAATAATCGAGTATCCCTTCAAAATTTTACTCATCCCTTT
65 TGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATCCCTTT
81288975 T
130 T
** * * * *
81288976 AAGAACCCTTT-AAAACAAAGGCAATG-TTTGATATTTGGTAATTCGTGGAATCGTGCCCTAACG
1 AA-AA-TTTTTCAAAACGAAGGCGA-GATTTGATATTT-GCAATTCGCGGAATCGTGCCCTAACG
* * * *
81289039 TGTTGGGTTGCGATTTCTCGTTTGCTCGAAATAATCAAATAACCCTTCAAAATTTCACTC
62 TGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTC
81289099 GTATCCTTTA
Statistics
Matches: 212, Mismatches: 38, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
131 111 0.52
132 97 0.46
133 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (130 bp):
AAAATTTTTCAAAACGAAGGCGAGATTTGATATTTGCAATTCGCGGAATCGTGCCCTAACGTGTT
GGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATCCCTTTT
Found at i:81289055 original size:132 final size:131
Alignment explanation
Indices: 81288751--81289098 Score: 403
Period size: 132 Copynumber: 2.6 Consensus size: 131
81288741 TGATGTTTGA
* * * * * *
81288751 CAATTCGCGGAATCGTGCCCTAACATTTTAGGTTGCAATTTCGCATTTACTCAAAATAATCGAAT
1 CAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAT
* ** ** * * *
81288816 ATCGCTTCAAAATTTCACTCATGTCTTTTAAAATTTTTCGAAACGAAGGCGAGATTCGATATTTA
66 ATCCCTTCAAAATTTCACTCATCCCTTTTAAAACCTTTCAAAACAAAGGCAAGATTCGATATTTA
81288881 G
131 G
* * * * *
81288882 CAATTCGCAGAATTGTGCCCTAACGTGTTGGGTTGCAATTTCTTGTTTGCTCTAAATAATCGAGT
1 CAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAT
* *
81288947 ATCCCTTCAAAATTTTACTCATCCCTTTTAAGAACCCTTT-AAAACAAAGGCAATG-TTTGATAT
66 ATCCCTTCAAAATTTCACTCATCCCTTTTAA-AA-CCTTTCAAAACAAAGGCAA-GATTCGATAT
*
81289010 TTGG
128 TTAG
* * * * *
81289014 TAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCGATTTCTCGTTTGCTCGAAATAATCAAAT
1 CAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAT
*
81289079 AACCCTTCAAAATTTCACTC
66 ATCCCTTCAAAATTTCACTC
81289099 GTATCCTTTA
Statistics
Matches: 181, Mismatches: 33, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
131 81 0.45
132 96 0.53
133 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (131 bp):
CAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAT
ATCCCTTCAAAATTTCACTCATCCCTTTTAAAACCTTTCAAAACAAAGGCAAGATTCGATATTTA
G
Found at i:81300639 original size:64 final size:65
Alignment explanation
Indices: 81300525--81300646 Score: 149
Period size: 64 Copynumber: 1.9 Consensus size: 65
81300515 CATAATCATT
* * *
81300525 CATTTAATTAAGGAGCACTTGAGTCATTTCGATCATAGCGTTCTGATTATTTGACATAAACACCA
1 CATTTAATTAAGGAGCACTTGAGTCATCTCGATCATAGCATCCTGATTATTTGACATAAACACCA
* * * * *
81300590 CATTTAGTTAGGGA-CATTTGATTCATCTCGATCATAGCATCCT-AGTTATTTGGCATA
1 CATTTAATTAAGGAGCACTTGAGTCATCTCGATCATAGCATCCTGA-TTATTTGACATA
81300647 CACAGATACA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
63 1 0.02
64 35 0.73
65 12 0.25
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (65 bp):
CATTTAATTAAGGAGCACTTGAGTCATCTCGATCATAGCATCCTGATTATTTGACATAAACACCA
Found at i:81300782 original size:44 final size:44
Alignment explanation
Indices: 81300717--81301206 Score: 616
Period size: 44 Copynumber: 11.1 Consensus size: 44
81300707 GCAAATCCTG
* * *
81300717 CAGATTTGGCATCCCTATATTGGCGGAGAGCAGATCGAAGATAT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAT
* * *
81300761 CAGATTTGACGTCTTTGTATTGGCGGAGAGCAGATCAAAGATAGT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATA-T
* *
81300806 -AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAT
* *
81300849 CAGATTTGGCGTCTTTGTATTGGCGGAGAGCAGATCAAAGATAGT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATA-T
*
81300894 -AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAG
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAT
* * *
81300937 CAGATTTGGCGTCTCTGTATTGGCGAAGAGCAGATTAAAGATAGT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATA-T
* * * *
81300982 -AGATTTGGCATCTCTGCATTGGCGGAGAACAGATCGAAGATAG
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAT
* * *
81301025 CAGATTTAG-AGTCTCTGCATTGGCGGAGAGCAGATCAAAGATAG
1 CAGATTTGGCA-TCTCTGTATTGGCGGAGAGCAGATCAAAGATAT
* *
81301069 CAGATTTGGCGTCACTGTATTGGCGGAGAGCAGATCAAAGATAGT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATA-T
*
81301114 -AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATA-T
* ** *
81301158 -AGATTTGGCATCTCTGTACTGGTAGAGAGCAGATCGAAA-ATAA
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATC-AAAGATAT
81301201 CAGATT
1 CAGATT
81301207 GGTTCATGAG
Statistics
Matches: 390, Mismatches: 45, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
43 1 0.00
44 386 0.99
45 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.26
Consensus pattern (44 bp):
CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAT
Found at i:81300867 original size:88 final size:88
Alignment explanation
Indices: 81300718--81301206 Score: 744
Period size: 88 Copynumber: 5.6 Consensus size: 88
81300708 CAAATCCTGC
* * * * *
81300718 AGATTTGGCATCCCTATATTGGCGGAGAGCAGATCGAAGATATCAGATTTGACGTCTTTGTATTG
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
81300783 GCGGAGAGCAGATCAAAGATAGT
66 GCGGAGAGCAGATCAAAGATAGT
*
81300806 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTG
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
81300871 GCGGAGAGCAGATCAAAGATAGT
66 GCGGAGAGCAGATCAAAGATAGT
*
81300894 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTG
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
* *
81300959 GCGAAGAGCAGATTAAAGATAGT
66 GCGGAGAGCAGATCAAAGATAGT
* * * * *
81300982 AGATTTGGCATCTCTGCATTGGCGGAGAACAGATCGAAGATAGCAGATTTAGAGTCTCTGCATTG
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
*
81301047 GCGGAGAGCAGATCAAAGATAGC
66 GCGGAGAGCAGATCAAAGATAGT
* * * * *
81301070 AGATTTGGCGTCACTGTATTGGCGGAGAGCAGATCAAAGATAGTAGATTTGGCATCTCTGTATTG
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
*
81301135 GCGGAGAGCAGATCGAAGATAGT
66 GCGGAGAGCAGATCAAAGATAGT
* ** * *
81301158 AGATTTGGCATCTCTGTACTGGTAGAGAGCAGATCGAAAATAACAGATT
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATT
81301207 GGTTCATGAG
Statistics
Matches: 363, Mismatches: 38, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 363 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.26
Consensus pattern (88 bp):
AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
GCGGAGAGCAGATCAAAGATAGT
Found at i:81300953 original size:132 final size:132
Alignment explanation
Indices: 81300716--81301206 Score: 709
Period size: 132 Copynumber: 3.7 Consensus size: 132
81300706 GGCAAATCCT
* * * * *
81300716 GCAGATTTGGCATCCCTATATTGGCGGAGAGCAGATCGAAGATA-TCAGATTTGACGTCTTTGTA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGT-AGATTTGGCATCTCTGTA
* * *
81300780 TTGGCGGAGAGCAGATCAAAGATAGTAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAG
65 TTGGCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAG
81300845 ATA
130 ATA
* * *
81300848 GCAGATTTGGCGTCTTTGTATTGGCGGAGAGCAGATCAAAGATAGTAGATTTGGCATCTCTGTAT
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTAT
* *
81300913 TGGCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCGAAGAGCAGATTAAAGA
66 TGGCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGA
81300978 TA
131 TA
* * * * * *
81300980 GTAGATTTGGCATCTCTGCATTGGCGGAGAACAGATCGAAGATAGCAGATTTAG-AGTCTCTGCA
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCA-TCTCTGTA
*
81301044 TTGGCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCACTGTATTGGCGGAGAGCAGATCAAAG
65 TTGGCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAG
81301109 ATA
130 ATA
* *
81301112 GTAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTAC
1 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTAT
** *
81301177 TGGTAGAGAGCAGATCGAAA-ATAACAGATT
66 TGGCGGAGAGCAGATC-AAAGATAGCAGATT
81301207 GGTTCATGAG
Statistics
Matches: 321, Mismatches: 34, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
131 1 0.00
132 315 0.98
133 5 0.02
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.26
Consensus pattern (132 bp):
GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTAT
TGGCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGA
TA
Found at i:81304230 original size:131 final size:129
Alignment explanation
Indices: 81303989--81304373 Score: 430
Period size: 131 Copynumber: 2.9 Consensus size: 129
81303979 TCATTCATTC
* * *
81303989 AAAATTCTTCAAAACGAAGACGAGATTTGATGTTTGACAATTCGC-AGAATCGTGCCCTAACGTT
1 AAAATTCTTCAAAACGAAGGCGAGA-TTGATATTTG-CAATTCGCGA-AATCGTGCCCTAACGTG
*** * * **
81304053 TTGGGTTGCAATTTCGCATTTGCTCAAAATAATCGAATATCGCTTCAAAACTTCACTCATGTCTT
63 TTGGGTTGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATCCCTT
81304118 TT
128 TT
* * *
81304120 AAAATTCTTCGAAATGAAGGCGAGATTCGATATTTAGCAATTCGCGAAATTGTGCCCTAACGTGT
1 AAAATTCTTCAAAACGAAGGCGAGATT-GATATTT-GCAATTCGCGAAATCGTGCCCTAACGTGT
* * *
81304185 TGGGTTGCAATTTCTTGTTTGCTCTAAATAATCGAGTATCCCTTCAAAATTTTACTCATCCCTTT
64 TGGGTTGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATCCCTTT
81304250 T
129 T
** * * * * * *
81304251 AAGAACCCTTTAAAACAAAGGCAAGGATTGATATTTGGTAATTCGTGGAATCGTGCCCTAACGTG
1 AA-AATTCTTCAAAACGAAGGCGA-GATTGATATTT-GCAATTCGCGAAATCGTGCCCTAACGTG
** * * *
81304316 TTGGGTTGTGATTTCTTGTTTGCTCGAAATAATCAAATAACCCTTCAAAATTTCACTC
63 TTGGGTTGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTC
81304374 GTATCCTTTA
Statistics
Matches: 214, Mismatches: 35, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
130 2 0.01
131 110 0.51
132 98 0.46
133 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (129 bp):
AAAATTCTTCAAAACGAAGGCGAGATTGATATTTGCAATTCGCGAAATCGTGCCCTAACGTGTTG
GGTTGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATCCCTTTT
Found at i:81314426 original size:15 final size:15
Alignment explanation
Indices: 81314408--81314437 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81314398 ATAAATGTTA
81314408 TAATAATAACAAAAG
1 TAATAATAACAAAAG
*
81314423 TAATAATAATAAAAG
1 TAATAATAACAAAAG
81314438 AAAGAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.07, T:0.23
Consensus pattern (15 bp):
TAATAATAACAAAAG
Found at i:81314445 original size:18 final size:18
Alignment explanation
Indices: 81314407--81314446 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
81314397 TATAAATGTT
*
81314407 ATAATAATAACAAAAGTA
1 ATAATAATAAAAAAAGTA
81314425 ATAATAATAAAAGAAAG-A
1 ATAATAATAAAA-AAAGTA
81314443 ATAA
1 ATAA
81314447 AGAAAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (18 bp):
ATAATAATAAAAAAAGTA
Found at i:81316960 original size:14 final size:14
Alignment explanation
Indices: 81316943--81316971 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81316933 TGTATTAAGA
81316943 TCATTGTATATAAT
1 TCATTGTATATAAT
81316957 TCATTGTATATAAT
1 TCATTGTATATAAT
81316971 T
1 T
81316972 GTAAAAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (14 bp):
TCATTGTATATAAT
Found at i:81317781 original size:35 final size:35
Alignment explanation
Indices: 81317742--81317899 Score: 151
Period size: 35 Copynumber: 4.5 Consensus size: 35
81317732 TGTTGACACA
** *
81317742 TAGGGTTCACATAGTATATAGACTCGCATATTAAC
1 TAGGGTTCACATAACATATAGACTCGCATAGTAAC
* * *
81317777 TAGGGTTCACATAACATATAGGCTCGCATGGTAGC
1 TAGGGTTCACATAACATATAGACTCGCATAGTAAC
* * *
81317812 TAGGGTTCACATAACAGT-TAGGCTTGCAGT-GTACC
1 TAGGGTTCACATAACA-TATAGACTCGCA-TAGTAAC
** * *
81317847 TAGGGTTCACATAACATATAGGTTCCCATA-CAACC
1 TAGGGTTCACATAACATATAGACTCGCATAGTAA-C
81317882 TAGGGTTCACATAACATA
1 TAGGGTTCACATAACATA
81317900 GTTTGCATAT
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
34 3 0.03
35 100 0.95
36 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (35 bp):
TAGGGTTCACATAACATATAGACTCGCATAGTAAC
Found at i:81317894 original size:18 final size:19
Alignment explanation
Indices: 81317843--81317899 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 19
81317833 GCTTGCAGTG
81317843 TACCTAGGGTTCACATAACA
1 TACCTAGGGTTCACAT-ACA
*
81317863 TA--TA-GGTTCCCATACA
1 TACCTAGGGTTCACATACA
81317879 -ACCTAGGGTTCACATAACA
1 TACCTAGGGTTCACAT-ACA
81317898 TA
1 TA
81317900 GTTTGCATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 1 0.03
16 3 0.10
17 10 0.33
18 10 0.33
19 3 0.10
20 3 0.10
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (19 bp):
TACCTAGGGTTCACATACA
Found at i:81319519 original size:21 final size:21
Alignment explanation
Indices: 81319495--81319535 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
81319485 TGCAATCGAC
*
81319495 AGGCTATGTCACAAGACATGT
1 AGGCCATGTCACAAGACATGT
* *
81319516 AGGCCATGTCGCGAGACATG
1 AGGCCATGTCACAAGACATG
81319536 CTAGCTAATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
AGGCCATGTCACAAGACATGT
Found at i:81321827 original size:25 final size:27
Alignment explanation
Indices: 81321798--81321884 Score: 76
Period size: 25 Copynumber: 3.4 Consensus size: 27
81321788 AGCTAATATT
* *
81321798 GGGAAGCTC-CG-GAGAGTCATTAATC
1 GGGAAGCTCACGAAAGAGCCATTAATC
* *
81321823 GGGAAGCTCATGAAAGAGCCTTTAATC
1 GGGAAGCTCACGAAAGAGCCATTAATC
*
81321850 GGGAAGCTC-TG-AAGAGCCA-TATATC
1 GGGAAGCTCACGAAAGAGCCATTA-ATC
*
81321875 GGGACGCTCA
1 GGGAAGCTCA
81321885 TAAGAGCTGC
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
24 2 0.04
25 27 0.52
26 3 0.06
27 20 0.38
ACGTcount: A:0.30, C:0.21, G:0.30, T:0.20
Consensus pattern (27 bp):
GGGAAGCTCACGAAAGAGCCATTAATC
Found at i:81321840 original size:27 final size:26
Alignment explanation
Indices: 81321810--81321891 Score: 98
Period size: 25 Copynumber: 3.2 Consensus size: 26
81321800 GAAGCTCCGG
*
81321810 AGAGTCATTAATCGGGAAGCTCATGAA
1 AGAGCCATTAATCGGGAAGCTCATG-A
*
81321837 AGAGCCTTTAATCGGGAAGCTC-TGA
1 AGAGCCATTAATCGGGAAGCTCATGA
*
81321862 AGAGCCA-TATATCGGGACGCTCAT-A
1 AGAGCCATTA-ATCGGGAAGCTCATGA
81321887 AGAGC
1 AGAGC
81321892 TGCAGTGTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
24 2 0.04
25 24 0.49
26 3 0.06
27 20 0.41
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.21
Consensus pattern (26 bp):
AGAGCCATTAATCGGGAAGCTCATGA
Found at i:81339702 original size:21 final size:21
Alignment explanation
Indices: 81339678--81339721 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
81339668 AAACGAGCAA
81339678 GGGCGGAATGGCACAATAGGC
1 GGGCGGAATGGCACAATAGGC
* *
81339699 GGGCGGAATGGCACGATGGGC
1 GGGCGGAATGGCACAATAGGC
81339720 GG
1 GG
81339722 TGGACCAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.18, G:0.50, T:0.09
Consensus pattern (21 bp):
GGGCGGAATGGCACAATAGGC
Found at i:81342234 original size:21 final size:20
Alignment explanation
Indices: 81342193--81342235 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
81342183 GAAGAAGAAG
* * *
81342193 AAGAGGATGATGAGGATGAT
1 AAGAGGACGATGAGAAGGAT
81342213 AAGATGGACGATGAGAAGGAT
1 AAGA-GGACGATGAGAAGGAT
81342234 AA
1 AA
81342236 TTGAACAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.44, C:0.02, G:0.37, T:0.16
Consensus pattern (20 bp):
AAGAGGACGATGAGAAGGAT
Found at i:81344250 original size:43 final size:43
Alignment explanation
Indices: 81344200--81344322 Score: 171
Period size: 43 Copynumber: 2.9 Consensus size: 43
81344190 GAGGTGTGAT
*
81344200 TTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATGA-GA
1 TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGATGA
81344242 TTACGTGTAAGACCATGTCTGGGACATTGGCATC-ATAT-ATGA
1 TT-CGTGTAAGACCATGTCTGGGACATTGGCATCGATATGATGA
* * **
81344284 TTCGTGTAAGACCCTGTATGGGACAGAGGCATCGATATG
1 TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATG
81344323 TGAAAACATG
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
41 28 0.39
42 14 0.19
43 30 0.42
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (43 bp):
TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGATGA
Done.