Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 246 of 343
Found at i:81351581 original size:10 final size:10
Alignment explanation
Indices: 81351566--81351590 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
81351556 AAATAAGTTA
81351566 AATTTGTATT
1 AATTTGTATT
81351576 AATTTGTATT
1 AATTTGTATT
81351586 AATTT
1 AATTT
81351591 AGATCAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (10 bp):
AATTTGTATT
Found at i:81359267 original size:21 final size:21
Alignment explanation
Indices: 81359243--81359283 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81359233 TATAAATATA
81359243 AAAAAAATACAAAAAAAATTG
1 AAAAAAATACAAAAAAAATTG
* *
81359264 AAAAAAATTCTAAAAAAATT
1 AAAAAAATACAAAAAAAATT
81359284 ATCCTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (21 bp):
AAAAAAATACAAAAAAAATTG
Found at i:81359282 original size:11 final size:11
Alignment explanation
Indices: 81359204--81359283 Score: 51
Period size: 11 Copynumber: 7.6 Consensus size: 11
81359194 TGAAAATATT
*
81359204 AAAAATTTTAA
1 AAAAATTCTAA
* *
81359215 AAAAATGCCAA
1 AAAAATTCTAA
*
81359226 AAAAA-TCTAT
1 AAAAATTCTAA
* *
81359236 AAATA-T-AAA
1 AAAAATTCTAA
* *
81359245 AAAAATACAAA
1 AAAAATTCTAA
*
81359256 AAAAATT-GAA
1 AAAAATTCTAA
81359266 AAAAATTCTAA
1 AAAAATTCTAA
81359277 AAAAATT
1 AAAAATT
81359284 ATCCTAAAAA
Statistics
Matches: 52, Mismatches: 14, Indels: 6
0.72 0.19 0.08
Matches are distributed among these distances:
9 5 0.10
10 16 0.31
11 31 0.60
ACGTcount: A:0.69, C:0.06, G:0.03, T:0.23
Consensus pattern (11 bp):
AAAAATTCTAA
Found at i:81361936 original size:4 final size:4
Alignment explanation
Indices: 81361909--81361950 Score: 52
Period size: 4 Copynumber: 10.8 Consensus size: 4
81361899 AAAAAAATTC
*
81361909 AATA ACTA AATCA AAT- AA-A AATA AATA AATA AATA AATA AAT
1 AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA AAT
81361951 GATACAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 4 0.12
4 25 0.76
5 4 0.12
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:81361937 original size:19 final size:18
Alignment explanation
Indices: 81361909--81361945 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
81361899 AAAAAAATTC
*
81361909 AATAACTAAATCAAATAAA
1 AATAAATAAAT-AAATAAA
81361928 AATAAATAAATAAATAAA
1 AATAAATAAATAAATAAA
81361946 TAAATGATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (18 bp):
AATAAATAAATAAATAAA
Found at i:81370962 original size:46 final size:46
Alignment explanation
Indices: 81370914--81371095 Score: 231
Period size: 46 Copynumber: 4.0 Consensus size: 46
81370904 ACTCTCTGAT
* * * *
81370914 ATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAACTTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
81370960 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
81371006 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
81371052 A-GAAAATGAGGAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
81371096 TCAAAGATAA
Statistics
Matches: 121, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 120 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:81371397 original size:16 final size:17
Alignment explanation
Indices: 81371376--81371408 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81371366 ATGATGGAGC
81371376 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
81371392 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
81371409 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:81374164 original size:31 final size:31
Alignment explanation
Indices: 81374124--81374194 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
81374114 AAGTAGTAAC
*
81374124 TACTATGTATCAATGTTTATGTTATAGCAGG
1 TACTATGTATCAATGTTTATATTATAGCAGG
* ** * *
81374155 TACTTTGTATCGGTGTTTATATTGTATCAGG
1 TACTATGTATCAATGTTTATATTATAGCAGG
81374186 TACTATGTA
1 TACTATGTA
81374195 CCTATGTTGG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.25, C:0.10, G:0.20, T:0.45
Consensus pattern (31 bp):
TACTATGTATCAATGTTTATATTATAGCAGG
Found at i:81381377 original size:15 final size:16
Alignment explanation
Indices: 81381357--81381413 Score: 62
Period size: 18 Copynumber: 3.4 Consensus size: 16
81381347 AAAAAACCCC
81381357 TTTCTCTTCTCT-TCT
1 TTTCTCTTCTCTCTCT
*
81381372 TTTCTCTTCCCTTTCTCT
1 TTTCTCTT--CTCTCTCT
*
81381390 TTTCTCTTTTCTCTCT
1 TTTCTCTTCTCTCTCT
81381406 TTCTCTCT
1 TT-TCTCT
81381414 CTGTATGTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
15 8 0.23
16 8 0.23
17 8 0.23
18 11 0.31
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTCTCTTCTCTCTCT
Found at i:81381390 original size:26 final size:25
Alignment explanation
Indices: 81381354--81381403 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
81381344 AGGAAAAAAC
81381354 CCCTTTCTCTTCTCTTCTTTTCTCTT
1 CCCTTTCTCTTCTC-TCTTTTCTCTT
*
81381380 CCCTTTCTCTTTTCTCTTTTCTCT
1 CCCTTTCTCTTCTCTCTTTTCTCT
81381404 CTTTCTCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (25 bp):
CCCTTTCTCTTCTCTCTTTTCTCTT
Found at i:81389825 original size:5 final size:5
Alignment explanation
Indices: 81389815--81389839 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
81389805 TATTGGGGTT
81389815 GACAG GACAG GACAG GACAG GACAG
1 GACAG GACAG GACAG GACAG GACAG
81389840 AAATGAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
GACAG
Found at i:81392948 original size:17 final size:17
Alignment explanation
Indices: 81392909--81392950 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
81392899 TTAATTTCTC
* *
81392909 TTTATA-ATTTTATAAT
1 TTTATATATATTAAAAT
81392925 TTT-TATATATTAAAAT
1 TTTATATATATTAAAAT
81392941 TTTATATATA
1 TTTATATATA
81392951 CCCAGCTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 14 0.64
17 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTATATATATTAAAAT
Found at i:81393809 original size:29 final size:28
Alignment explanation
Indices: 81393760--81393818 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 28
81393750 TTTTAGAAAA
* *
81393760 TTTTTGAAATTTTAACTTTCTTTATATATT
1 TTTTTAAAATTTTAACATTC-TTATA-ATT
81393790 TTTTTAAAATTTTAA-ATTCTTATAATT
1 TTTTTAAAATTTTAACATTCTTATAATT
81393817 TT
1 TT
81393819 AAAAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 5 0.19
28 5 0.19
29 3 0.11
30 14 0.52
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63
Consensus pattern (28 bp):
TTTTTAAAATTTTAACATTCTTATAATT
Found at i:81393880 original size:20 final size:20
Alignment explanation
Indices: 81393857--81393897 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
81393847 TTTTTTTAAA
81393857 TTTTAAAAAGTATTTTGAAT
1 TTTTAAAAAGTATTTTGAAT
* *
81393877 TTTTAATAATTATTTTGAAT
1 TTTTAAAAAGTATTTTGAAT
81393897 T
1 T
81393898 ATTTTGTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
TTTTAAAAAGTATTTTGAAT
Found at i:81394361 original size:3 final size:3
Alignment explanation
Indices: 81394353--81394378 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
81394343 CAATAATCTT
81394353 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
81394379 TAAAAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:81398007 original size:3 final size:3
Alignment explanation
Indices: 81398001--81398050 Score: 91
Period size: 3 Copynumber: 16.3 Consensus size: 3
81397991 TATTAAGGTT
81398001 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
81398047 TAA T
1 TAA T
81398051 TATTATTATT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:81398749 original size:20 final size:21
Alignment explanation
Indices: 81398719--81398762 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
81398709 ATAAAATAAT
*
81398719 AAACAAAAGTAAAATAAAAAG
1 AAACAAAAGTAAAAGAAAAAG
*
81398740 AAAC-AAAGTAAAAGAAACAG
1 AAACAAAAGTAAAAGAAAAAG
81398760 AAA
1 AAA
81398763 AGAAACAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.75, C:0.07, G:0.11, T:0.07
Consensus pattern (21 bp):
AAACAAAAGTAAAAGAAAAAG
Found at i:81402842 original size:40 final size:40
Alignment explanation
Indices: 81402748--81402892 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
81402738 TACTCGAATG
*
81402748 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
81402789 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
81402829 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
81402869 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
81402893 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:81404869 original size:22 final size:22
Alignment explanation
Indices: 81404844--81404887 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
81404834 TAGTCATATA
81404844 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
81404866 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
81404888 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:81404913 original size:19 final size:17
Alignment explanation
Indices: 81404841--81404925 Score: 52
Period size: 18 Copynumber: 4.8 Consensus size: 17
81404831 ATTTAGTCAT
*
81404841 ATAATAAATTATTAATATA
1 ATAATAAATT-TT-ATTTA
81404860 ATAAATATAATTTATTATTT-
1 AT-AATA-AA-TT-TTATTTA
81404880 -TAATAAA--TTATTTA
1 ATAATAAATTTTATTTA
*
81404894 ATATTTAAATTTTATCTTA
1 ATA-ATAAATTTTAT-TTA
81404913 ATAATAAATTTTA
1 ATAATAAATTTTA
81404926 AAAATAATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 19
0.71 0.04 0.25
Matches are distributed among these distances:
13 6 0.11
15 2 0.04
16 4 0.07
17 2 0.04
18 17 0.31
19 9 0.17
20 4 0.07
21 5 0.09
22 5 0.09
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (17 bp):
ATAATAAATTTTATTTA
Found at i:81404933 original size:16 final size:16
Alignment explanation
Indices: 81404911--81404947 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
81404901 AATTTTATCT
81404911 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
81404928 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
81404943 TAATA
1 TAATA
81404948 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:81405000 original size:15 final size:15
Alignment explanation
Indices: 81404980--81405036 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
81404970 ATTCAATATT
81404980 AATATTTTAATAATA
1 AATATTTTAATAATA
*
81404995 AATATTTATTACAAATATA
1 AATA-TT-TTA-ATA-ATA
*
81405014 AATATATTAATAATA
1 AATATTTTAATAATA
81405029 AATATTTT
1 AATATTTT
81405037 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 14 0.41
16 4 0.12
17 6 0.18
18 3 0.09
19 7 0.21
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:81405011 original size:17 final size:17
Alignment explanation
Indices: 81404986--81405035 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
81404976 TATTAATATT
81404986 TTAATAATAAATATTTA
1 TTAATAATAAATATTTA
*
81405003 TTACA-AATATAA-ATATA
1 TTA-ATAATA-AATATTTA
81405020 TTAATAATAAATATTT
1 TTAATAATAAATATTT
81405036 TGTAGTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
16 3 0.11
17 21 0.78
18 3 0.11
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAATAATAAATATTTA
Found at i:81413506 original size:31 final size:31
Alignment explanation
Indices: 81413457--81413529 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
81413447 TAATTTATTT
* * *
81413457 AGTACTCGCATCCCTTGGGTACGATCCTCAA
1 AGTACTCACCTCCATTGGGTACGATCCTCAA
*
81413488 AGTACTCACCTCCATTGGGTACGATCCTTAA
1 AGTACTCACCTCCATTGGGTACGATCCTCAA
* *
81413519 AGCACTTACCT
1 AGTACTCACCT
81413530 ACTTTATTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (31 bp):
AGTACTCACCTCCATTGGGTACGATCCTCAA
Found at i:81417141 original size:44 final size:44
Alignment explanation
Indices: 81417078--81417177 Score: 191
Period size: 44 Copynumber: 2.3 Consensus size: 44
81417068 TTCTTAGGTG
81417078 CAGGGGACACGCGCCCGTGTGTCAGGCCGTGTGACTCACATGGC
1 CAGGGGACACGCGCCCGTGTGTCAGGCCGTGTGACTCACATGGC
81417122 CAGGGGACACGCGCCCGTGTGTCAGGCCGTGTGACTCACATGGC
1 CAGGGGACACGCGCCCGTGTGTCAGGCCGTGTGACTCACATGGC
*
81417166 CAGGTGACACGC
1 CAGGGGACACGC
81417178 TCGTGTCTTA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.17, C:0.32, G:0.36, T:0.15
Consensus pattern (44 bp):
CAGGGGACACGCGCCCGTGTGTCAGGCCGTGTGACTCACATGGC
Found at i:81417196 original size:42 final size:43
Alignment explanation
Indices: 81417078--81417196 Score: 159
Period size: 44 Copynumber: 2.7 Consensus size: 43
81417068 TTCTTAGGTG
*
81417078 CAGGGGACACGCGCCCGTGTGTCAGGCCGTGTGACTCACATGGC
1 CAGGGGACAC-CGCCCGTGTCTCAGGCCGTGTGACTCACATGGC
*
81417122 CAGGGGACACGCGCCCGTGTGTCAGGCCGTGTGACTCACATGGC
1 CAGGGGACAC-CGCCCGTGTCTCAGGCCGTGTGACTCACATGGC
* * * *
81417166 CAGGTGACA-CGCTCGTGTCTTAGGTCGTGTG
1 CAGGGGACACCGCCCGTGTCTCAGGCCGTGTG
81417197 GGCAGTCAAT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
42 18 0.26
44 52 0.74
ACGTcount: A:0.15, C:0.29, G:0.36, T:0.19
Consensus pattern (43 bp):
CAGGGGACACCGCCCGTGTCTCAGGCCGTGTGACTCACATGGC
Found at i:81421926 original size:39 final size:40
Alignment explanation
Indices: 81421829--81422088 Score: 307
Period size: 40 Copynumber: 6.5 Consensus size: 40
81421819 ATGATGTCCA
* * * *
81421829 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* * *
81421869 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
81421909 GGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* * *
81421948 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
81421988 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
81422027 GGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTACAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
81422067 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
81422089 AACGAGTAGC
Statistics
Matches: 187, Mismatches: 25, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
39 68 0.36
40 109 0.58
41 10 0.05
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:81421961 original size:79 final size:79
Alignment explanation
Indices: 81421829--81422095 Score: 342
Period size: 79 Copynumber: 3.4 Consensus size: 79
81421819 ATGATGTCCA
* * * * *
81421829 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAG-CCCGAAGGCATTTGTAC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTG
81421893 CGAGATACTAATTCCG
64 CGAGATACTAATTCCG
*
81421909 GGCTAAGCCCGAAGGCATTTGTACGAGTTACTAAATCTGGACTAAGATCCGAAGGCATTTGTGCG
1 GGCTAAGCCCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCG
81421974 AGATACTAATTCCG
66 AGATACTAATTCCG
* ** *
81421988 GGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTGTGC
1 GGCTAAGCCCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGC
* *
81422052 GAGTTACTACA-ACCG
65 GAGATACTA-ATTCCG
* *
81422067 GGCTATGTCCCGAAGGCATTTGAACGAGT
1 GGCTAAG-CCCGAAGGCATTTGTACGAGT
81422096 AGCTATATCC
Statistics
Matches: 167, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 133 0.80
80 33 0.20
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
GGCTAAGCCCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCG
AGATACTAATTCCG
Found at i:81422119 original size:79 final size:78
Alignment explanation
Indices: 81421877--81422121 Score: 307
Period size: 79 Copynumber: 3.1 Consensus size: 78
81421867 CGGACTAAGA
81421877 TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTA
1 TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTA
* *
81421942 AATCTGGACTAAGA-
66 AATCCGG--TAAAAT
*
81421956 TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTA
* *
81422021 AATCCGGGTTAAGT
66 AATCC-GGTAAAAT
* * * * * *
81422035 CCCGAAGGCAATTGTGCGAGTTACTACA-ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTA-
*
81422098 CTATATCCGGTAAAAT
63 CTAAATCCGGTAAAAT
81422114 TCCGAAGG
1 TCCGAAGG
81422122 TACGTGATTT
Statistics
Matches: 145, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
78 2 0.01
79 115 0.79
80 28 0.19
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (78 bp):
TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTA
AATCCGGTAAAAT
Found at i:81425820 original size:16 final size:16
Alignment explanation
Indices: 81425799--81425829 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81425789 TTTATTATTT
81425799 TATTAACATAATATAA
1 TATTAACATAATATAA
*
81425815 TATTAATATAATATA
1 TATTAACATAATATA
81425830 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:81438151 original size:14 final size:14
Alignment explanation
Indices: 81438134--81438164 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
81438124 AGTAAAATAT
81438134 TTTCCGGAAAATGA
1 TTTCCGGAAAATGA
*
81438148 TTTCTGGAAAATGA
1 TTTCCGGAAAATGA
81438162 TTT
1 TTT
81438165 ACTTTTCTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (14 bp):
TTTCCGGAAAATGA
Found at i:81438183 original size:19 final size:20
Alignment explanation
Indices: 81438148--81438193 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
81438138 CGGAAAATGA
*
81438148 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATAATTTACT
81438168 TTTCTGG-AAATAATTTACT
1 TTTCTGGAAAATAATTTACT
81438187 TTTCTGG
1 TTTCTGG
81438194 TGTTTTGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATAATTTACT
Found at i:81439646 original size:32 final size:32
Alignment explanation
Indices: 81439600--81439660 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
81439590 TGTCAATCAT
81439600 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
* *
81439632 TTCAATATCTAACAAGCTTGAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
81439661 CAATATCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:81439667 original size:27 final size:30
Alignment explanation
Indices: 81439600--81439673 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 30
81439590 TGTCAATCAT
*
81439600 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAAC--AATAAA
*
81439632 TTCAATATCTAACAAGCTTGAAAC-AT-AA
1 TTCAATATCTAACAAGCTTAAAACAATAAA
81439660 -TCAATATCTAACAA
1 TTCAATATCTAACAA
81439674 ATTCAAGACA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.35
28 2 0.05
29 2 0.05
32 22 0.55
ACGTcount: A:0.50, C:0.19, G:0.04, T:0.27
Consensus pattern (30 bp):
TTCAATATCTAACAAGCTTAAAACAATAAA
Found at i:81439684 original size:27 final size:27
Alignment explanation
Indices: 81439633--81439687 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
81439623 CATAATAAAT
* *
81439633 TCAATATCTAACAAGCTTGAAACATAA
1 TCAATATCTAACAAGATTCAAACATAA
81439660 TCAATATCTAACAA-ATTCAAGACATAA
1 TCAATATCTAACAAGATTCAA-ACATAA
81439687 T
1 T
81439688 AATTTCAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.27
Consensus pattern (27 bp):
TCAATATCTAACAAGATTCAAACATAA
Found at i:81444903 original size:55 final size:53
Alignment explanation
Indices: 81444844--81444949 Score: 158
Period size: 55 Copynumber: 2.0 Consensus size: 53
81444834 GGGAAGAGAT
* *
81444844 TTGAAGAATGGAAGAAGAAGAAGACTTACCTGGATGAAGAATGAGATGGAAAAAG
1 TTGAAGAATGGAAGAAAAAGAAGACTTACCT-GATGAAG-AGGAGATGGAAAAAG
* *
81444899 TTGAAGAATGGAAGAAAAAGATGGCTTACCTGATGAAGAGGAGATGGAAAA
1 TTGAAGAATGGAAGAAAAAGAAGACTTACCTGATGAAGAGGAGATGGAAAA
81444950 TGTCTTAAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
53 12 0.26
54 7 0.15
55 28 0.60
ACGTcount: A:0.46, C:0.06, G:0.31, T:0.17
Consensus pattern (53 bp):
TTGAAGAATGGAAGAAAAAGAAGACTTACCTGATGAAGAGGAGATGGAAAAAG
Found at i:81444917 original size:20 final size:22
Alignment explanation
Indices: 81444878--81444918 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
81444868 CTTACCTGGA
*
81444878 TGAAGAATGAGATGGAAAAAGT
1 TGAAGAATGAGATAGAAAAAGT
81444900 TGAAGAATG-GA-AGAAAAAG
1 TGAAGAATGAGATAGAAAAAG
81444919 ATGGCTTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 2 0.11
22 9 0.50
ACGTcount: A:0.54, C:0.00, G:0.32, T:0.15
Consensus pattern (22 bp):
TGAAGAATGAGATAGAAAAAGT
Found at i:81451171 original size:46 final size:46
Alignment explanation
Indices: 81451121--81451246 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
81451111 TGGTTGAGCA
*
81451121 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
81451167 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
81451213 CCCCAGCTAGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81451247 GGGGCGGGTT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:81460624 original size:13 final size:13
Alignment explanation
Indices: 81460606--81460630 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81460596 TCCTTTGTCT
81460606 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
81460619 TTTCTTTTTTTT
1 TTTCTTTTTTTT
81460631 TTGAAGGTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTCTTTTTTTTC
Found at i:81461218 original size:6 final size:6
Alignment explanation
Indices: 81461209--81461255 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
81461199 GGCTTTTTTT
* *
81461209 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC CTTACC TTTGC
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGC
81461256 AATATAGTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.02, C:0.34, G:0.15, T:0.49
Consensus pattern (6 bp):
TTTGCC
Found at i:81465142 original size:46 final size:46
Alignment explanation
Indices: 81465092--81465264 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
81465082 TGGTTGAGCA
81465092 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81465138 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81465183 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81465231 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81465265 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81465248 original size:93 final size:93
Alignment explanation
Indices: 81465089--81465259 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
81465079 GGATGGTTGA
* * *
81465089 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
81465154 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81465182 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
81465247 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81465260 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81470284 original size:61 final size:59
Alignment explanation
Indices: 81470142--81470313 Score: 165
Period size: 60 Copynumber: 2.8 Consensus size: 59
81470132 TCAAGCTTTA
*
81470142 CTGGGCCTAAGCCCTATT-CAGAAATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCT-AGCCCTATTACAG--ATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATATCAAT
* * *
81470204 CTGCGCCATAGCCC-CTTACAGTATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAAT
1 CTGGGCC-TAGCCCTATTACAG-ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAAT
* *
81470264 CTGGGCCGTAGCCCTATTACA-AGTC-GAGATATATTGGGCCTTGCCCATAT
1 CTGGGCC-TAGCCCTATTACAGA-TCAGAG-TATACTGGGCCTAGCCCATAT
81470314 TAACACAATA
Statistics
Matches: 94, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
59 4 0.04
60 51 0.54
61 23 0.24
62 15 0.16
63 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (59 bp):
CTGGGCCTAGCCCTATTACAGATCAGAGTATACTGGGCCTAGCCCATATCAATATCAAT
Found at i:81471014 original size:8 final size:8
Alignment explanation
Indices: 81470987--81471017 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
81470977 ACATAATGCT
81470987 GGCTTTTC
1 GGCTTTTC
*
81470995 GGCATTTC
1 GGCTTTTC
81471003 GGCTTTTC
1 GGCTTTTC
81471011 GGCTTTT
1 GGCTTTT
81471018 GCCGATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.03, C:0.23, G:0.26, T:0.48
Consensus pattern (8 bp):
GGCTTTTC
Found at i:81472421 original size:12 final size:13
Alignment explanation
Indices: 81472399--81472427 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
81472389 TAAACTAAAC
81472399 ATAAGAAATAATA
1 ATAAGAAATAATA
81472412 ATAA-AAATAATA
1 ATAAGAAATAATA
81472424 ATAA
1 ATAA
81472428 TGATAACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.24
Consensus pattern (13 bp):
ATAAGAAATAATA
Found at i:81475512 original size:41 final size:42
Alignment explanation
Indices: 81475424--81475601 Score: 150
Period size: 41 Copynumber: 4.3 Consensus size: 42
81475414 TTCAGATATA
* * ** * *
81475424 TATATATATGACACTTAGTGTGTGATTTGGA-ATAGATTCGAC
1 TATATATA-GGCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
81475466 TATATATA-GCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
1 TATATATAGGCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
* * *
81475507 TATATAT-GGCACTTACTGTGCAAGATCGAGATAG-TTGCGGC
1 TATATATAGGCACTTAGTGTGCGAGATCGAGATAGCTT-CGAC
* * ** * *
81475548 TATGTA-AGGCACTTAGTGTGAGAGATTAAAATAGCTTCAAC
1 TATATATAGGCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
* *
81475589 TATGTATTGGCAC
1 TATATATAGGCAC
81475602 ATAATGTGTG
Statistics
Matches: 111, Mismatches: 19, Indels: 12
0.78 0.13 0.08
Matches are distributed among these distances:
40 18 0.16
41 78 0.70
42 15 0.14
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
TATATATAGGCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
Found at i:81477430 original size:47 final size:47
Alignment explanation
Indices: 81477361--81477455 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
81477351 ATATTTATCA
* *
81477361 TACAATTCAGATAATAATAACAATATCTGTCTTAGGTTTCATTCCCC
1 TACAATTCAGATAATAATAACAAGATCTATCTTAGGTTTCATTCCCC
81477408 TACAATTCAGATAATAATAACAAGATCTATCTTAGGTTTCATTCCCC
1 TACAATTCAGATAATAATAACAAGATCTATCTTAGGTTTCATTCCCC
81477455 T
1 T
81477456 TAGGTATTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (47 bp):
TACAATTCAGATAATAATAACAAGATCTATCTTAGGTTTCATTCCCC
Found at i:81479885 original size:12 final size:12
Alignment explanation
Indices: 81479868--81479906 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
81479858 TAAAGAAGAT
*
81479868 AATTAAAGATAA
1 AATTAAAAATAA
81479880 AATTAAAAATAA
1 AATTAAAAATAA
*
81479892 AAATAATAAATAA
1 AATTAA-AAATAA
81479905 AA
1 AA
81479907 AGTTTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 16 0.67
13 8 0.33
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (12 bp):
AATTAAAAATAA
Found at i:81494962 original size:37 final size:37
Alignment explanation
Indices: 81494886--81494970 Score: 116
Period size: 37 Copynumber: 2.3 Consensus size: 37
81494876 TTTGAGTACG
* * *
81494886 TGTAAGACCATAGCTGGGCTATGGCATCGTAATGACA
1 TGTAAGACCATAGCTAGGCTATGGCATCATAATCACA
* * *
81494923 TGTAAGACCATAGCTAGGCTATGGCATTATGATCCCA
1 TGTAAGACCATAGCTAGGCTATGGCATCATAATCACA
81494960 TGTAAGACCAT
1 TGTAAGACCAT
81494971 GTCTGGGACA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (37 bp):
TGTAAGACCATAGCTAGGCTATGGCATCATAATCACA
Found at i:81495005 original size:48 final size:48
Alignment explanation
Indices: 81494952--81495130 Score: 254
Period size: 48 Copynumber: 3.7 Consensus size: 48
81494942 TATGGCATTA
*
81494952 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* *
81495000 TGATCCCATGTAAGATCATGTCTAGGACATGGCATTGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * *
81495048 TGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGAGATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
**
81495096 TGAT--TTTGGATAAGACCATGTCTGGGACATGGCAT
1 TGATCCCAT-G-TAAGACCATGTCTGGGACATGGCAT
81495131 CAATATGAGA
Statistics
Matches: 117, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 115 0.98
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
Found at i:81499027 original size:42 final size:42
Alignment explanation
Indices: 81498980--81499059 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
81498970 TCGGTTTGTG
* * *
81498980 ATTTCATATAAGACCTTTTCAGGGACATGGCGTTGATATCAT
1 ATTTCATATAAGACCATATCAGGGACATGGCATTGATATCAT
* * *
81499022 ATTTCATGTAAGACCATATCCGGGATATGGCATTGATA
1 ATTTCATATAAGACCATATCAGGGACATGGCATTGATA
81499060 CGGTACTAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (42 bp):
ATTTCATATAAGACCATATCAGGGACATGGCATTGATATCAT
Found at i:81500488 original size:41 final size:40
Alignment explanation
Indices: 81500402--81500587 Score: 194
Period size: 41 Copynumber: 4.5 Consensus size: 40
81500392 AATTCAAATA
*
81500402 TATATATGGCACTTAGTGTGCGA-TTCAGAATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGAGATCAG-ATAGCTTCGGC
*
81500442 TATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGT
1 TATATATGGCACTTAGTGTGCGAGATC-AGATAGCTTCGGC
* * *
81500483 TATATATGGCAATTAGTGTGTGAGATCAAGATAGCTTTGGC
1 TATATATGGCACTTAGTGTGCGAGATC-AGATAGCTTCGGC
* * * * * **
81500524 TATCTAAGGCACTTAGTGTGTGAGATTAAAATAGCTTCAAC
1 TATATATGGCACTTAGTGTGCGAGA-TCAGATAGCTTCGGC
* *
81500565 TATGTATTGGCATTTAGTGTGCG
1 TATATA-TGGCACTTAGTGTGCG
81500588 TGATATCGAG
Statistics
Matches: 123, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
40 23 0.19
41 84 0.68
42 16 0.13
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGCGAGATCAGATAGCTTCGGC
Found at i:81510477 original size:37 final size:37
Alignment explanation
Indices: 81510429--81510509 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
81510419 TTTCATTTTC
* *
81510429 ATTTCCATTTTGGCGAAAACCACATTCATTTCCAAATG
1 ATTT-CATTTTGGAGAAAACCACAATCATTTCCAAATG
* **
81510467 ATTTCATTTTGGAGAAAATCTTAATCATTTCCAAATG
1 ATTTCATTTTGGAGAAAACCACAATCATTTCCAAATG
81510504 -TTTCAT
1 ATTTCAT
81510510 ATTTCTCTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
36 6 0.16
37 28 0.74
38 4 0.11
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.40
Consensus pattern (37 bp):
ATTTCATTTTGGAGAAAACCACAATCATTTCCAAATG
Found at i:81514131 original size:40 final size:42
Alignment explanation
Indices: 81514079--81514174 Score: 108
Period size: 40 Copynumber: 2.4 Consensus size: 42
81514069 TTAAATAATC
*
81514079 AAATACAT-TTAAAACAAATATTAAAACAAGAAACAAA-T-A
1 AAATATATATTAAAACAAATATTAAAACAAGAAACAAATTGA
* * * * *
81514118 AAATATATATTAAAACAATTCTTAGAACAATACACAAATTGA
1 AAATATATATTAAAACAAATATTAAAACAAGAAACAAATTGA
*
81514160 AAATATATAATAAAA
1 AAATATATATTAAAA
81514175 ATTGATTATA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
39 7 0.15
40 24 0.51
41 1 0.02
42 15 0.32
ACGTcount: A:0.62, C:0.09, G:0.03, T:0.25
Consensus pattern (42 bp):
AAATATATATTAAAACAAATATTAAAACAAGAAACAAATTGA
Found at i:81514176 original size:20 final size:19
Alignment explanation
Indices: 81514153--81514210 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
81514143 AACAATACAC
81514153 AAATTGAAAATATATAATAA
1 AAATTGAAAATATA-AATAA
** *
81514173 AAATTGATTATATTAAAATTA
1 AAATTGAAAATA-T-AAATAA
81514194 AAATT-AAAATATAAATA
1 AAATTGAAAATATAAATA
81514211 TAATTAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
18 4 0.13
19 1 0.03
20 14 0.47
21 10 0.33
22 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
AAATTGAAAATATAAATAA
Found at i:81514226 original size:24 final size:23
Alignment explanation
Indices: 81514189--81514235 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
81514179 ATTATATTAA
* *
81514189 AATTAAAATTAAAATATAAATAT
1 AATTAAAATAAAAAAATAAATAT
*
81514212 AATTAAAAATAAAAAAATATATAT
1 AATT-AAAATAAAAAAATAAATAT
81514236 TTATTATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (23 bp):
AATTAAAATAAAAAAATAAATAT
Found at i:81520605 original size:35 final size:35
Alignment explanation
Indices: 81520561--81520632 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
81520551 GAATAATCAC
*
81520561 AAATTTTAAATATAAACAATAAAAAATAAATATAA
1 AAATCTTAAATATAAACAATAAAAAATAAATATAA
* *
81520596 AAATCTTAAATATAGACAGTAAAAAATAAATATAA
1 AAATCTTAAATATAAACAATAAAAAATAAATATAA
81520631 AA
1 AA
81520633 GATACTCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.67, C:0.04, G:0.03, T:0.26
Consensus pattern (35 bp):
AAATCTTAAATATAAACAATAAAAAATAAATATAA
Found at i:81533605 original size:21 final size:21
Alignment explanation
Indices: 81533562--81533606 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
81533552 GTCAACATTT
**
81533562 AATTAATTTTTAAAAATTTAA
1 AATTAATTTTTAAAAATAAAA
* *
81533583 AATTTATTTTTTAAAATAAAA
1 AATTAATTTTTAAAAATAAAA
81533604 AAT
1 AAT
81533607 CATTAAAATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
AATTAATTTTTAAAAATAAAA
Found at i:81535832 original size:16 final size:18
Alignment explanation
Indices: 81535805--81535837 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
81535795 ATAAAAATAA
81535805 TAAAAATAATTA-AAAAC
1 TAAAAATAATTACAAAAC
81535822 TAAAAAT-ATTACAAAA
1 TAAAAATAATTACAAAA
81535838 ATATTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (18 bp):
TAAAAATAATTACAAAAC
Found at i:81535948 original size:17 final size:17
Alignment explanation
Indices: 81535904--81535951 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 17
81535894 ATAAATTTTT
81535904 TTATAAATATTAAAAAAA
1 TTATAAA-ATTAAAAAAA
81535922 TCTA-ATAAATTAAAAAAA
1 T-TATA-AAATTAAAAAAA
81535940 TTATAAAATTAA
1 TTATAAAATTAA
81535952 TAAACAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
17 9 0.33
18 14 0.52
19 4 0.15
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (17 bp):
TTATAAAATTAAAAAAA
Found at i:81535954 original size:9 final size:9
Alignment explanation
Indices: 81535906--81535955 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
81535896 AAATTTTTTT
81535906 ATAAATATTA
1 ATAAA-ATTA
*
81535916 AAAAAATCTA
1 ATAAAAT-TA
81535926 AT-AAATTA
1 ATAAAATTA
*
81535934 AAAAAATT-
1 ATAAAATTA
81535942 ATAAAATTA
1 ATAAAATTA
81535951 ATAAA
1 ATAAA
81535956 CAAATACTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
8 10 0.30
9 16 0.48
10 7 0.21
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (9 bp):
ATAAAATTA
Found at i:81536484 original size:21 final size:22
Alignment explanation
Indices: 81536457--81536500 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
81536447 TGTACTATAC
*
81536457 TTAAAAATTGAAAATAA-AATTT
1 TTAAAAA-TAAAAATAATAATTT
81536479 TTAAAAATAAAAATAATAATTT
1 TTAAAAATAAAAATAATAATTT
81536501 ATCAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
TTAAAAATAAAAATAATAATTT
Found at i:81544896 original size:24 final size:25
Alignment explanation
Indices: 81544832--81544914 Score: 77
Period size: 24 Copynumber: 3.4 Consensus size: 25
81544822 CTAATATATT
81544832 AGCTC-ATAAGAGCTTACTGTTCTC
1 AGCTCGATAAGAGCTTACTGTTCTC
* * *
81544856 AGCTCG-TCAGGGTTTACTGTT-TCC
1 AGCTCGATAAGAGCTTACTGTTCT-C
*
81544880 AGCTCGAT-AGAGCTTACTATTCATC
1 AGCTCGATAAGAGCTTACTGTTC-TC
81544905 AGCTC-ATAAG
1 AGCTCGATAAG
81544915 GAGTTTATCA
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
23 1 0.02
24 36 0.77
25 9 0.19
26 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (25 bp):
AGCTCGATAAGAGCTTACTGTTCTC
Found at i:81553956 original size:16 final size:16
Alignment explanation
Indices: 81553928--81553968 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
81553918 TACTTAAGTT
81553928 TAATAATCCTATAATA
1 TAATAATCCTATAATA
* *
81553944 TACTAATCTTATAATA
1 TAATAATCCTATAATA
81553960 TAATAATCC
1 TAATAATCC
81553969 AATGGCCATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.39
Consensus pattern (16 bp):
TAATAATCCTATAATA
Found at i:81563290 original size:30 final size:30
Alignment explanation
Indices: 81563256--81563318 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
81563246 TGAACAAACT
*
81563256 ACTTTTAATTGAAATTTTTAATTTTTTAAA
1 ACTTTTAATTGAAATTTTTAACTTTTTAAA
81563286 ACTTTTAATTGAAATTTTTAACTTTTTAAA
1 ACTTTTAATTGAAATTTTTAACTTTTTAAA
81563316 ACT
1 ACT
81563319 GCTTTTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (30 bp):
ACTTTTAATTGAAATTTTTAACTTTTTAAA
Found at i:81563522 original size:21 final size:21
Alignment explanation
Indices: 81563498--81563545 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
81563488 TATATATTTT
81563498 TTTAAATACTA-ATTACAAATA
1 TTTAAATACTATATT-CAAATA
* * *
81563519 TTTAATTATTATATTTAAATA
1 TTTAAATACTATATTCAAATA
81563540 TTTAAA
1 TTTAAA
81563546 ATATAGTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTAAATACTATATTCAAATA
Found at i:81568473 original size:27 final size:26
Alignment explanation
Indices: 81568415--81568476 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
81568405 TCCAATAAGC
*
81568415 CACTATCATTAAATTGCACTGAAGCG
1 CACTATCATTAAATTGCACTGAAACG
* *
81568441 CTACTATCATTTAATTGCACTGAAATG
1 C-ACTATCATTAAATTGCACTGAAACG
81568468 TCACTATCA
1 -CACTATCA
81568477 CTATGTGCGC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 1 0.03
27 29 0.94
28 1 0.03
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (26 bp):
CACTATCATTAAATTGCACTGAAACG
Found at i:81569997 original size:24 final size:22
Alignment explanation
Indices: 81569970--81570014 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
81569960 ATGACATTTT
81569970 CTTCGTATAATTTCACTTTTAATC
1 CTTCGTAT-ATTT-ACTTTTAATC
* *
81569994 CTTCTTCTATTTACTTTTAAT
1 CTTCGTATATTTACTTTTAAT
81570015 TCAATTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.22, C:0.20, G:0.02, T:0.56
Consensus pattern (22 bp):
CTTCGTATATTTACTTTTAATC
Found at i:81570592 original size:16 final size:17
Alignment explanation
Indices: 81570578--81570609 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81570568 ACTAAGTTAT
81570578 AACTAATTAAAGTTAAC
1 AACTAATTAAAGTTAAC
81570595 AACTAATTAAA-TTAA
1 AACTAATTAAAGTTAA
81570610 TTAAAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.31
Consensus pattern (17 bp):
AACTAATTAAAGTTAAC
Found at i:81577064 original size:44 final size:41
Alignment explanation
Indices: 81576967--81577065 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 41
81576957 GAATGGTATT
* *
81576967 TGGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTATCTGA
1 TGGCACTAAGTGTGCGATCCAAAATAGCTTCAGCTATCTGA
* *
81577008 -GGCACTAAGTGTGCGATACCAAGATAGCTTCAGTTAAT-TGAAA
1 TGGCACTAAGTGTGCGAT-CCAAAATAGCTTCAGCT-ATCTG--A
81577051 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
81577066 AAAATATTTC
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
40 17 0.35
41 15 0.31
42 2 0.04
43 1 0.02
44 14 0.29
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGATCCAAAATAGCTTCAGCTATCTGA
Found at i:81578517 original size:39 final size:39
Alignment explanation
Indices: 81578448--81578527 Score: 97
Period size: 39 Copynumber: 2.1 Consensus size: 39
81578438 AACATGTTTT
* ** *
81578448 TGAGTATTGCGATGTACACTTGAATGTTATGCGATTATA
1 TGAGTATTGCGATATACACTTGAACATTATGCAATTATA
* * *
81578487 TGAGTATTGCTATATACGCTTGAACATTATGTAATTATA
1 TGAGTATTGCGATATACACTTGAACATTATGCAATTATA
81578526 TG
1 TG
81578528 CTTAAAAGTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (39 bp):
TGAGTATTGCGATATACACTTGAACATTATGCAATTATA
Found at i:81582466 original size:21 final size:21
Alignment explanation
Indices: 81582442--81582481 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
81582432 TTGAATTGGG
81582442 AACCAGTGG-TCTGATTATTGC
1 AACCAGTGGTTC-GATTATTGC
*
81582463 AACCATTGGTTCGATTATT
1 AACCAGTGGTTCGATTATT
81582482 AGAATACTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (21 bp):
AACCAGTGGTTCGATTATTGC
Found at i:81582694 original size:21 final size:22
Alignment explanation
Indices: 81582668--81582713 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
81582658 AAAGTGGATA
* *
81582668 AAAAAAGTACATTTATCAAA-T
1 AAAAAAGTACAGTTACCAAACT
81582689 AAAAAAGTACAGTTACCAAACT
1 AAAAAAGTACAGTTACCAAACT
81582711 AAA
1 AAA
81582714 CCTAGCTGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.59, C:0.13, G:0.07, T:0.22
Consensus pattern (22 bp):
AAAAAAGTACAGTTACCAAACT
Found at i:81588833 original size:16 final size:16
Alignment explanation
Indices: 81588814--81588848 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
81588804 ATTTATAAAA
81588814 ATAAAAAT-TATTTAAT
1 ATAAAAATAT-TTTAAT
81588830 ATAAAAATATTTTAAT
1 ATAAAAATATTTTAAT
81588846 ATA
1 ATA
81588849 TTTTAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 17 0.94
17 1 0.06
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
ATAAAAATATTTTAAT
Found at i:81589014 original size:16 final size:16
Alignment explanation
Indices: 81588993--81589060 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
81588983 TTTGGTTCGC
81588993 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
81589009 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGG
81589025 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
81589041 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
81589057 TGTA
1 TGTA
81589061 ATAGCAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:81589317 original size:18 final size:17
Alignment explanation
Indices: 81589296--81589330 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
81589286 TTATTATTAA
*
81589296 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
81589314 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
81589331 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:81589437 original size:18 final size:17
Alignment explanation
Indices: 81589416--81589450 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
81589406 TTATTATTAA
*
81589416 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
81589434 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
81589451 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:81589492 original size:120 final size:120
Alignment explanation
Indices: 81589279--81589781 Score: 988
Period size: 120 Copynumber: 4.2 Consensus size: 120
81589269 ATCATATTTA
81589279 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
81589344 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
81589399 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
81589464 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
81589519 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
81589584 TATTCTTATATTAATTTACTAAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
81589639 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
81589704 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
81589759 AACATAATAATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
81589782 AACTTGAAAA
Statistics
Matches: 380, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 380 1.00
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:81589557 original size:18 final size:17
Alignment explanation
Indices: 81589536--81589570 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
81589526 TTATTATTAA
*
81589536 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
81589554 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
81589571 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:81589677 original size:18 final size:17
Alignment explanation
Indices: 81589656--81589690 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
81589646 TTATTATTAA
*
81589656 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
81589674 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
81589691 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:81592886 original size:21 final size:21
Alignment explanation
Indices: 81592843--81592898 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
81592833 AAGCAGATGG
*
81592843 AGCCACTGCAAATAAATTATAT
1 AGCCACTGCAAA-CAATTATAT
*
81592865 AGCCACTGCAAACAATTGTAT
1 AGCCACTGCAAACAATTATAT
81592886 AGCCACTGCAAAC
1 AGCCACTGCAAAC
81592899 GGGGGAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 20 0.62
22 12 0.38
ACGTcount: A:0.41, C:0.25, G:0.12, T:0.21
Consensus pattern (21 bp):
AGCCACTGCAAACAATTATAT
Found at i:81594012 original size:33 final size:33
Alignment explanation
Indices: 81593970--81594105 Score: 176
Period size: 33 Copynumber: 4.3 Consensus size: 33
81593960 AAAAATGGCA
*
81593970 AGAGGAACAAAACATGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
**
81594003 AGAGAAACAAAA-A----ACCA-CTACAGAAAAT
1 AGAGAAACAAAACATGGTA-CAGAAACAGAAAAT
* *
81594031 AGAGGAACAAAACATGGTACAGAAACATAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
81594064 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
81594097 AGAGAAACA
1 AGAGAAACA
81594106 TAAAGCAGAC
Statistics
Matches: 87, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
28 21 0.24
29 3 0.03
32 3 0.03
33 60 0.69
ACGTcount: A:0.60, C:0.13, G:0.18, T:0.09
Consensus pattern (33 bp):
AGAGAAACAAAACATGGTACAGAAACAGAAAAT
Found at i:81594089 original size:18 final size:18
Alignment explanation
Indices: 81594036--81594090 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
81594026 AAAATAGAGG
81594036 AACAAAACATGGTACAGA
1 AACAAAACATGGTACAGA
*
81594054 AACATAAA-A---TAGAGA
1 AACA-AAACATGGTACAGA
81594069 AACAAAACATGGTACAGA
1 AACAAAACATGGTACAGA
81594087 AACA
1 AACA
81594091 GAAAATAGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 3 0.10
15 10 0.33
18 14 0.47
19 3 0.10
ACGTcount: A:0.60, C:0.15, G:0.15, T:0.11
Consensus pattern (18 bp):
AACAAAACATGGTACAGA
Found at i:81594906 original size:19 final size:21
Alignment explanation
Indices: 81594884--81594922 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
81594874 GCTTCAATTT
*
81594884 TTTTAA-AT-TATAATATATC
1 TTTTAACATATATAAAATATC
81594903 TTTTAACATATATAAAATAT
1 TTTTAACATATATAAAATAT
81594923 GCAATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 2 0.12
21 9 0.53
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTAACATATATAAAATATC
Found at i:81595104 original size:21 final size:20
Alignment explanation
Indices: 81595066--81595105 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
81595056 AAGAAGAAAT
* *
81595066 TAAAATTGTTTTTTATTATA
1 TAAAATTATTTTTAATTATA
81595086 TAAATATTATTTTTAATTAT
1 TAAA-ATTATTTTTAATTAT
81595106 CTCTATGCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (20 bp):
TAAAATTATTTTTAATTATA
Found at i:81598489 original size:39 final size:39
Alignment explanation
Indices: 81598437--81598514 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
81598427 CGAGTTTAAT
81598437 TTTCTTTCTGGGAATTGAATAATTAATATCAGAAGAGAA
1 TTTCTTTCTGGGAATTGAATAATTAATATCAGAAGAGAA
81598476 TTTCTTTCTGGGAATTGAATAATTAATATCAGAAGAGAA
1 TTTCTTTCTGGGAATTGAATAATTAATATCAGAAGAGAA
81598515 AGACCAACCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (39 bp):
TTTCTTTCTGGGAATTGAATAATTAATATCAGAAGAGAA
Found at i:81609547 original size:13 final size:14
Alignment explanation
Indices: 81609515--81609549 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
81609505 TTCCTTTCAA
81609515 AAAATTATTATTATT
1 AAAATT-TTATTATT
81609530 AAAATTTTATTA-T
1 AAAATTTTATTATT
81609543 AAAATTT
1 AAAATTT
81609550 AAAAGAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 8 0.40
14 6 0.30
15 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
AAAATTTTATTATT
Found at i:81611177 original size:75 final size:75
Alignment explanation
Indices: 81611054--81611204 Score: 302
Period size: 75 Copynumber: 2.0 Consensus size: 75
81611044 CACATGAGAG
81611054 TATGTCTCTTACTAATTAATGTTGGGCCTTTAAGAAAATCCTTGTGCTACAAGTCGTGTTTTATA
1 TATGTCTCTTACTAATTAATGTTGGGCCTTTAAGAAAATCCTTGTGCTACAAGTCGTGTTTTATA
81611119 TCTTACGAGT
66 TCTTACGAGT
81611129 TATGTCTCTTACTAATTAATGTTGGGCCTTTAAGAAAATCCTTGTGCTACAAGTCGTGTTTTATA
1 TATGTCTCTTACTAATTAATGTTGGGCCTTTAAGAAAATCCTTGTGCTACAAGTCGTGTTTTATA
81611194 TCTTACGAGT
66 TCTTACGAGT
81611204 T
1 T
81611205 CATTTTTCTC
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (75 bp):
TATGTCTCTTACTAATTAATGTTGGGCCTTTAAGAAAATCCTTGTGCTACAAGTCGTGTTTTATA
TCTTACGAGT
Found at i:81615063 original size:20 final size:20
Alignment explanation
Indices: 81615042--81615094 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
81615032 TCTTTCTATA
81615042 AAAAT-ATGATGAACAAATT
1 AAAATAATGATGAACAAATT
81615061 AAAATAATGATGAACAAATT
1 AAAATAATGATGAACAAATT
81615081 AAAATAATGATGAA
1 AAAATAATGATGAA
81615095 AATATGTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 5 0.15
20 28 0.85
ACGTcount: A:0.60, C:0.04, G:0.11, T:0.25
Consensus pattern (20 bp):
AAAATAATGATGAACAAATT
Found at i:81617216 original size:40 final size:39
Alignment explanation
Indices: 81617129--81617347 Score: 233
Period size: 40 Copynumber: 5.5 Consensus size: 39
81617119 CGTTCAAATA
* * * *
81617129 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATG
*
81617168 CCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATG
* *
81617208 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATG
* * *
81617248 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATA
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATG
** * * * *
81617288 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAATG
*
81617328 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
81617348 CAGCATTCAA
Statistics
Matches: 152, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 33 0.22
40 111 0.73
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATG
Found at i:81617274 original size:80 final size:78
Alignment explanation
Indices: 81617123--81617347 Score: 281
Period size: 80 Copynumber: 2.8 Consensus size: 78
81617113 GCTCCTCGTT
* * * *
81617123 CAAATACCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATACCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
*
81617188 TTTAATAACTCGCA
65 ATTAATAACTCGCA
* * *
81617202 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGG
1 CAAATACCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
81617267 AATTAATAACTCGCA
64 AATTAATAACTCGCA
* * * *
81617282 CAAATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATACCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
81617346 GA
63 GA
81617348 CAGCATTCAA
Statistics
Matches: 126, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 38 0.30
80 78 0.62
81 9 0.07
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (78 bp):
CAAATACCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTAATAACTCGCA
Found at i:81622652 original size:43 final size:43
Alignment explanation
Indices: 81622496--81622657 Score: 191
Period size: 43 Copynumber: 3.8 Consensus size: 43
81622486 CAAAGTCTGC
* *** * *
81622496 TATAAATTTTGCTTGTGTATAGTATTTAACAATGGGCGAGTTG
1 TATAAAGTTTGCTTGTGTATAGTATTCGCCAATAGGAGAGTTG
* * *
81622539 TATAAAGTTTGCTTGTGTATAGTATTCACCACTAGGTGAGTTG
1 TATAAAGTTTGCTTGTGTATAGTATTCGCCAATAGGAGAGTTG
* *
81622582 TATAAAGTTTGCTTGTGTATAATATTCGTCAATAGGAGAGTTG
1 TATAAAGTTTGCTTGTGTATAGTATTCGCCAATAGGAGAGTTG
* *
81622625 TATGAAGTCTT-CTTGTGTATTGTATTCGCCAAT
1 TATAAAGT-TTGCTTGTGTATAGTATTCGCCAAT
81622658 GGGCGAACTA
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
43 101 0.98
44 2 0.02
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (43 bp):
TATAAAGTTTGCTTGTGTATAGTATTCGCCAATAGGAGAGTTG
Found at i:81624036 original size:24 final size:24
Alignment explanation
Indices: 81623975--81624020 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
81623965 TAGTTTGAAA
* *
81623975 GAGCGTCCCGTTATTAGCTCTCAT
1 GAGCATCCCGTTATTAGCCCTCAT
81623999 GAGCATCCCGTTATTAGCCCTC
1 GAGCATCCCGTTATTAGCCCTC
81624021 TCGAGCTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.33, G:0.20, T:0.30
Consensus pattern (24 bp):
GAGCATCCCGTTATTAGCCCTCAT
Found at i:81624199 original size:26 final size:26
Alignment explanation
Indices: 81624151--81624201 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
81624141 ATGGCTTTTT
* *
81624151 GTGAGCTTCTCGATTAAAGGCTCTTA
1 GTGAGCTTCTCGATCAAACGCTCTTA
* *
81624177 GTGAGCTTCTTGATCAATCGCTCTT
1 GTGAGCTTCTCGATCAAACGCTCTT
81624202 CAGAGCTTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTGAGCTTCTCGATCAAACGCTCTTA
Found at i:81626194 original size:26 final size:26
Alignment explanation
Indices: 81626158--81626217 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
81626148 CATACCCCAG
81626158 TAAAATTTTGACAATTTTA-CTCCTGA
1 TAAAATTTTGACAATTTTACCTCC-GA
**
81626184 TAAAATTTTGATGATTTTACCTCCGA
1 TAAAATTTTGACAATTTTACCTCCGA
81626210 TAAAATTT
1 TAAAATTT
81626218 CGAGAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 27 0.87
27 4 0.13
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.43
Consensus pattern (26 bp):
TAAAATTTTGACAATTTTACCTCCGA
Found at i:81630070 original size:13 final size:16
Alignment explanation
Indices: 81630037--81630067 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81630027 TGAAGTTCTT
81630037 ATTTTATTAAATGATG
1 ATTTTATTAAATGATG
*
81630053 ATTTTATTAAGTGAT
1 ATTTTATTAAATGAT
81630068 TTTGATAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (16 bp):
ATTTTATTAAATGATG
Found at i:81630677 original size:47 final size:47
Alignment explanation
Indices: 81630608--81630816 Score: 208
Period size: 47 Copynumber: 4.5 Consensus size: 47
81630598 ATTGACGGAA
* * * *
81630608 AAGACCATGGTTGGGCCATGGCAAC-ATGTGATATGTGATTTCCGTAT
1 AAGACCATAGCTGGGCTATGGCATCGATGTGATATGTGATTT-CGTAT
* * *
81630655 AAGACCATAGCTGGGCTATGGCATCGGTGTGATATGAGCTTTCGTAT
1 AAGACCATAGCTGGGCTATGGCATCGATGTGATATGTGATTTCGTAT
* * * * * * *
81630702 AGGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTTTGTGT
1 AAGACCATAGCTGGGCTATGGCATCGATGTGATATGTGATTTCGTAT
* * *
81630749 AAGACCATATCTGGGATATGGCATC-AGTGTGATATGTGA-TTCGTGT
1 AAGACCATAGCTGGGCTATGGCATCGA-TGTGATATGTGATTTCGTAT
* *
81630795 AAGACCGTGGCTGGGCTATGGC
1 AAGACCATAGCTGGGCTATGGC
81630817 TTTAGTGTGT
Statistics
Matches: 139, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
46 24 0.17
47 102 0.73
48 13 0.09
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.31
Consensus pattern (47 bp):
AAGACCATAGCTGGGCTATGGCATCGATGTGATATGTGATTTCGTAT
Found at i:81638832 original size:46 final size:46
Alignment explanation
Indices: 81638782--81638954 Score: 158
Period size: 46 Copynumber: 3.7 Consensus size: 46
81638772 TGGTTGAGCA
*
81638782 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
81638828 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
81638873 CATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGAATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81638921 -CTGGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81638955 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 57 0.55
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81638938 original size:93 final size:93
Alignment explanation
Indices: 81638779--81638949 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
81638769 GGATGGTTGA
* * * *
81638779 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGTCCGAACTCATTGAGT
*
81638844 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
81638872 GCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGAATGCGAACG-CTGGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGTC-CGAACTCATTGAG
81638936 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
81638950 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 1 0.01
93 68 0.99
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81642420 original size:20 final size:19
Alignment explanation
Indices: 81642384--81642434 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
81642374 AAGGGCTATT
*
81642384 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
81642403 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
81642423 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
81642435 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:81643151 original size:46 final size:45
Alignment explanation
Indices: 81643080--81643226 Score: 147
Period size: 46 Copynumber: 3.2 Consensus size: 45
81643070 TATGTGCGCT
81643080 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCAT-GGCCACATTATGAAAGCC
* * *
81643126 AGTGTAAGACACGTCTGGGATATGCAT--CAACATTGA-GACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATGGCCACATT-ATGA--A-AGCC
* * *
81643172 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATGCAAGCC
1 AGTGTAAGACATGTCTGGGACATGCA-TGGCCAC-A-TTATGAAAGCC
81643220 AGTGTAA
1 AGTGTAA
81643227 AACCTATTTG
Statistics
Matches: 82, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
43 8 0.10
44 1 0.01
45 1 0.01
46 53 0.65
47 1 0.01
48 11 0.13
49 3 0.04
50 2 0.02
51 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATGGCCACATTATGAAAGCC
Found at i:81643267 original size:92 final size:93
Alignment explanation
Indices: 81643080--81643392 Score: 298
Period size: 92 Copynumber: 3.3 Consensus size: 93
81643070 TATGTGCGCT
* *
81643080 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAAAGCCAGTGTAAGACAC-GTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAATATGAAAGCCAGTGTAAGAC-CTGTCTG
*
81643143 GGATAT-GCATCAACATTGAGACGAGAGCC
65 GGACATGGCATCAACATT-AGACGAGAGCC
* * * * *
81643172 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATGCAAGCCAGTGTAAAACCTATTTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-ATATGAAAGCCAGTGTAAGACCTGTCTG
* * *
81643237 GGACATGGCATCAGC-TT-GAC-ATGTGTC
65 GGACATGGCATCAACATTAGACGA-GAGCC
* * * * *
81643264 AGTGTATGACCTGTCTGGGACATGGCATCGGCGTTGATATATGAAAGTCAGTGTAAGACCTGTCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGA-ATATGAAAGCCAGTGTAAGACCTGTCT
* * *
81643329 GGGACATGGCATCGAC-TTAGATGTGTGAGCC
64 GGGACATGGCATCAACATTAGA--CGAGAGCC
* *
81643360 AGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
81643393 ATCGTACCCT
Statistics
Matches: 178, Mismatches: 32, Indels: 17
0.78 0.14 0.07
Matches are distributed among these distances:
91 1 0.01
92 59 0.33
93 50 0.28
94 30 0.17
95 7 0.04
96 11 0.06
97 20 0.11
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAATATGAAAGCCAGTGTAAGACCTGTCTGG
GACATGGCATCAACATTAGACGAGAGCC
Found at i:81643283 original size:44 final size:47
Alignment explanation
Indices: 81643125--81643341 Score: 153
Period size: 49 Copynumber: 4.6 Consensus size: 47
81643115 TTATGAAAGC
* * * *
81643125 CAGTGTAAGACAC-GTCTGGGATAT-GCATCAACATTGAGAC--GAGAGC
1 CAGTGTAAGAC-CTGTCTGGGACATGGCATCAGCGTTGA-ACATGA-AGT
* ** * * * *
81643171 CAGTGTAAGACATGTCTGGGACAT-GCATTGGCCTCGAGATATGCAAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAGCGTTGA-ACATG-AAGT
* * * *
81643219 CAGTGTAAAACCTATTTGGGACATGGCATCAGC-TTG-ACATG-TGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAGCGTTGAACATGAAGT
* * *
81643263 CAGTGTATGACCTGTCTGGGACATGGCATCGGCGTTGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAGCGTTGA-ACATG-AAGT
81643312 CAGTGTAAGACCTGTCTGGGACATGGCATC
1 CAGTGTAAGACCTGTCTGGGACATGGCATC
81643342 GACTTAGATG
Statistics
Matches: 135, Mismatches: 26, Indels: 17
0.76 0.15 0.10
Matches are distributed among these distances:
44 29 0.21
45 3 0.02
46 35 0.26
47 4 0.03
48 26 0.19
49 38 0.28
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCAGCGTTGAACATGAAGT
Found at i:81646728 original size:24 final size:24
Alignment explanation
Indices: 81646701--81646798 Score: 160
Period size: 24 Copynumber: 4.0 Consensus size: 24
81646691 AAGGCTGTCA
81646701 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
81646725 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
81646749 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
81646773 GGAGAAGATTTAGGAGCTGATTAAG
1 GGAGAAGATTTAGGAGCTGA-TAAG
81646798 G
1 G
81646799 AGCAGGAGTT
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
24 65 0.94
25 4 0.06
ACGTcount: A:0.36, C:0.04, G:0.39, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:81646794 original size:12 final size:12
Alignment explanation
Indices: 81646707--81646801 Score: 59
Period size: 12 Copynumber: 7.9 Consensus size: 12
81646697 GTCAGGAGAA
*
81646707 GATTTAGGAGCT
1 GATTAAGGAGCT
**
81646719 GA-TAAGGGAGAG
1 GATTAA-GGAGCT
*
81646731 GATTTAGGAGCT
1 GATTAAGGAGCT
**
81646743 GA-TAAGGGAGAG
1 GATTAA-GGAGCT
*
81646755 GATTTAGGAGCT
1 GATTAAGGAGCT
* **
81646767 GATAAAGGAGAA
1 GATTAAGGAGCT
*
81646779 GATTTAGGAGCT
1 GATTAAGGAGCT
81646791 GATTAAGGAGC
1 GATTAAGGAGC
81646802 AGGAGTTGGC
Statistics
Matches: 58, Mismatches: 21, Indels: 8
0.67 0.24 0.09
Matches are distributed among these distances:
11 4 0.07
12 50 0.86
13 4 0.07
ACGTcount: A:0.35, C:0.05, G:0.38, T:0.22
Consensus pattern (12 bp):
GATTAAGGAGCT
Found at i:81648493 original size:33 final size:34
Alignment explanation
Indices: 81648418--81648496 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 34
81648408 TGGGCCATAT
*
81648418 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTAA
1 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTCAA
* ** *
81648452 TGTAATCTGAA-AA-GGGCTCTGGCCCAGTATCAC
1 TGTTATCTGAATAAGGGGCTAAGGCCCAGT-TCAA
81648485 TGTTATCTGAAT
1 TGTTATCTGAAT
81648497 GGGCTTAGGC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
32 13 0.35
33 14 0.38
34 10 0.27
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (34 bp):
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTCAA
Found at i:81648508 original size:32 final size:31
Alignment explanation
Indices: 81648418--81648508 Score: 76
Period size: 32 Copynumber: 2.8 Consensus size: 31
81648408 TGGGCCATAT
* *
81648418 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTAA
1 TGTTATCTGAAT---GGGCTTAGGCCCAGTTCAA
* * *
81648452 TGTAATCTGAAAAGGGCTCT-GGCCCAGTATCAC
1 TGTTATCTG-AATGGGCT-TAGGCCCAGT-TCAA
81648485 TGTTATCTGAATGGGCTTAGGCCC
1 TGTTATCTGAATGGGCTTAGGCCC
81648509 GATGGGCTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
31 1 0.02
32 25 0.54
33 10 0.22
34 8 0.17
35 2 0.04
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (31 bp):
TGTTATCTGAATGGGCTTAGGCCCAGTTCAA
Found at i:81655051 original size:29 final size:29
Alignment explanation
Indices: 81655019--81655074 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
81655009 TGCCATAGTG
*
81655019 TCTTCCAACTATGGTCTGATTCATTTCTA
1 TCTTCCAACCATGGTCTGATTCATTTCTA
* *
81655048 TCTTTCAACCATGGTCTTATTCATTTC
1 TCTTCCAACCATGGTCTGATTCATTTC
81655075 CCAACATGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.20, C:0.25, G:0.09, T:0.46
Consensus pattern (29 bp):
TCTTCCAACCATGGTCTGATTCATTTCTA
Found at i:81655099 original size:46 final size:46
Alignment explanation
Indices: 81655046--81655155 Score: 184
Period size: 46 Copynumber: 2.4 Consensus size: 46
81655036 GATTCATTTC
81655046 TATCTTTCAACCATGGTCTTATTCATTTCCCAACATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTCCCAACATGTTGCCATGG
* ***
81655092 TATCTTTCAACTATGGTCTTATTCATTTCCTGTCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTCCCAACATGTTGCCATGG
81655138 TATCTTTCAACCATGGTC
1 TATCTTTCAACCATGGTC
81655156 ATATCTGAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.42
Consensus pattern (46 bp):
TATCTTTCAACCATGGTCTTATTCATTTCCCAACATGTTGCCATGG
Found at i:81655365 original size:33 final size:33
Alignment explanation
Indices: 81655216--81655369 Score: 120
Period size: 33 Copynumber: 4.7 Consensus size: 33
81655206 TCTAGTATGA
* * *
81655216 TGCCATAGTCCAACTATGGTCTTACACATGTAT
1 TGCCATAGCCCAGCTATGGTCTTACACATATAT
* * *
81655249 TG--ATGGCCCAGCTATGGTCTTACAC-TCGTAG
1 TGCCATAGCCCAGCTATGGTCTTACACAT-ATAT
* * * * *
81655280 TGCCAAATCCCAGATATGGTCTTATCA-TTAGGAT
1 TGCCATAGCCCAGCTATGGTCTTA-CACATA-TAT
*
81655314 T-CCATAGCCTAGCTATGGTCTTACACATATAT
1 TGCCATAGCCCAGCTATGGTCTTACACATATAT
* *
81655346 TGCCATGGCCCAGCCATGGTCTTA
1 TGCCATAGCCCAGCTATGGTCTTA
81655370 TCCGTCAATT
Statistics
Matches: 93, Mismatches: 20, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
30 1 0.01
31 25 0.27
32 5 0.05
33 57 0.61
34 5 0.05
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (33 bp):
TGCCATAGCCCAGCTATGGTCTTACACATATAT
Found at i:81673993 original size:40 final size:40
Alignment explanation
Indices: 81673938--81674113 Score: 284
Period size: 40 Copynumber: 4.4 Consensus size: 40
81673928 GATGATATTT
81673938 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
81673978 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
81674018 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
* * * *
81674058 GGGCTAAGACCTGAAGGCATTTGTACGAGTTG-CTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCC
*
81674098 -GGCTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
81674114 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.10
40 113 0.88
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
Found at i:81683152 original size:17 final size:17
Alignment explanation
Indices: 81683130--81683163 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81683120 ACATATCATG
81683130 ATAAACTCCCGGTTGAA
1 ATAAACTCCCGGTTGAA
*
81683147 ATAAACTCCTGGTTGAA
1 ATAAACTCCCGGTTGAA
81683164 CCTTAGGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (17 bp):
ATAAACTCCCGGTTGAA
Found at i:81683305 original size:47 final size:46
Alignment explanation
Indices: 81683217--81683472 Score: 152
Period size: 47 Copynumber: 5.5 Consensus size: 46
81683207 TATGTGTGCT
* *
81683217 AGTGTAAGACATGTCTGGGGC-ATGCATCAGCCA-AATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAATGCATCAG-CATAA-GATGAGAGCC
* *
81683263 AGTGTAAGACATGTTTGGGACAATGCATCAGCATTAAGATGAGAGCT
1 AGTGTAAGACATGTCTGGGACAATGCATCAGCA-TAAGATGAGAGCC
* * * *
81683310 AGTGTAAGACATGTCTGAGA-TATGCATCAACCTCAAGAT-ATGCAAGCC
1 AGTGTAAGACATGTCTGGGACAATGCATCAGCAT-AAGATGA-G--AGCC
* * * * * * * *
81683358 AGTGTAAGACCTGTTTGGGAC-ATGGCATCGGCTTGACAT--GTGTC
1 AGTGTAAGACATGTCTGGGACAAT-GCATCAGCATAAGATGAGAGCC
* * *
81683402 AGTGTAAGACCTATCTGGGAC-ATGGCATC-GACACCGATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAAT-GCATCAG-CA--TA-AGATGAGAGCC
*
81683451 AGTGTAAGACCTGTCTGGGACA
1 AGTGTAAGACATGTCTGGGACA
81683473 TGGCATCGGC
Statistics
Matches: 165, Mismatches: 29, Indels: 28
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.01
44 30 0.18
45 2 0.01
46 37 0.22
47 38 0.23
48 27 0.16
49 30 0.18
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACAATGCATCAGCATAAGATGAGAGCC
Found at i:81683462 original size:93 final size:94
Alignment explanation
Indices: 81683354--81683579 Score: 296
Period size: 98 Copynumber: 2.4 Consensus size: 94
81683344 AAGATATGCA
*
81683354 AGCCAGTGTAAGACCTGTTTGGGACATGGCATCGGCTTG-ACAT-G-TGTCAGTGTAAGACCTAT
1 AGCCAGTGTAAGACCTGTTTGGGACATGGCATCGGCTTGAACATGGAAGTCAGTGTAAGACCTAT
* *
81683416 CTGGGACATGGCATCGACACCGATAGATGAG
66 CTAGGACATGGCATCGACACAGAT-G-TGAG
* *
81683447 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGATATATGGAAGTCAGTGTAAGACCT
1 AGCCAGTGTAAGACCTGTTTGGGACATGGCATCGG-CTTGA-ACATGGAAGTCAGTGTAAGACCT
** *
81683512 ATCTAGGACATGGCATCGACTTAGATGTGTG
64 ATCTAGGACATGGCATCGACACAGATGTGAG
* *
81683543 AGCCAGTGTAAGACCATGTTTGGAATATGGCATCGGC
1 AGCCAGTGTAAGACC-TGTTTGGGACATGGCATCGGC
81683580 ATCGTACCCT
Statistics
Matches: 116, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
93 34 0.29
94 4 0.03
96 22 0.19
97 19 0.16
98 37 0.32
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (94 bp):
AGCCAGTGTAAGACCTGTTTGGGACATGGCATCGGCTTGAACATGGAAGTCAGTGTAAGACCTAT
CTAGGACATGGCATCGACACAGATGTGAG
Found at i:81683468 original size:49 final size:48
Alignment explanation
Indices: 81683254--81683577 Score: 215
Period size: 49 Copynumber: 6.8 Consensus size: 48
81683244 CAGCCAAATT
* * * *
81683254 ATGAGAGCCAGTGTAAGACATGTTTGGGACAAT-GCATC-AGCATTA-AG
1 ATGAGAGCCAGTGTAAGACCTGTCTGGGAC-ATGGCATCGA-CCTGATAG
* * * * * *
81683301 ATGAGAGCTAGTGTAAGACATGTCTGAGATAT-GCATCAACCTCA-AG
1 ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAG
* * * *
81683347 AT-ATGCAAGCCAGTGTAAGACCTGTTTGGGACATGGCATCGGCTTG--AC
1 ATGA-G--AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAG
* * * *
81683395 AT--GTGTCAGTGTAAGACCTATCTGGGACATGGCATCGACACCGATAG
1 ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTGATAG
* *
81683442 ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGATAT
1 ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACC-TGATAG
* * * *
81683491 ATG-GAAGTCAGTGTAAGACCTATCTAGGACATGGCATCGACTTAGAT-G
1 ATGAG-AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCT-GATAG
* * * *
81683539 -TGTGAGCCAGTGTAAGACCATGTTTGGAATATGGCATCG
1 ATGAGAGCCAGTGTAAGACC-TGTCTGGGACATGGCATCG
81683578 GCATCGTACC
Statistics
Matches: 220, Mismatches: 42, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
44 31 0.14
45 2 0.01
46 16 0.07
47 46 0.21
48 43 0.20
49 82 0.37
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAG
Found at i:81689259 original size:26 final size:26
Alignment explanation
Indices: 81689230--81689337 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
81689220 TGGTACAAAT
81689230 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81689256 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81689282 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81689308 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81689334 TGAT
1 TGAT
81689338 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81690792 original size:26 final size:26
Alignment explanation
Indices: 81690763--81690815 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
81690753 TTTACAGTTT
81690763 TACCCCTAGTAGTTAAATT-ACCGAAA
1 TACCCCTAG-AGTTAAATTCACCGAAA
* *
81690789 TACCCCTAGGGTTAAATTCACCTAAA
1 TACCCCTAGAGTTAAATTCACCGAAA
81690815 T
1 T
81690816 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (26 bp):
TACCCCTAGAGTTAAATTCACCGAAA
Found at i:81696293 original size:26 final size:26
Alignment explanation
Indices: 81696264--81696370 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
81696254 TGGTACAAAT
81696264 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81696290 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81696316 TGATAAT-GGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81696341 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81696367 TGAT
1 TGAT
81696371 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
25 22 0.30
26 51 0.70
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81696336 original size:51 final size:52
Alignment explanation
Indices: 81696264--81696370 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 52
81696254 TGGTACAAAT
81696264 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* * *
81696316 TGATAAT-GGTTAGGTAAATGTTCTATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
81696367 TGAT
1 TGAT
81696371 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 45 0.87
52 7 0.13
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:81697908 original size:26 final size:25
Alignment explanation
Indices: 81697856--81697908 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
81697846 TTTACAGTTT
81697856 TACCCCTAGTAGGTAAATTACCGAAA
1 TACCCCTAG-AGGTAAATTACCGAAA
*
81697882 TACCCCTAG-GGTTAAATTCACCTAAA
1 TACCCCTAGAGG-TAAATT-ACCGAAA
81697908 T
1 T
81697909 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.08
25 6 0.25
26 16 0.67
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (25 bp):
TACCCCTAGAGGTAAATTACCGAAA
Done.