Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 247 of 343
Found at i:81701817 original size:11 final size:11
Alignment explanation
Indices: 81701801--81701834 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
81701791 TCCACGGTTT
81701801 AGAAATTTTTG
1 AGAAATTTTTG
81701812 AGAAATTTTTG
1 AGAAATTTTTG
*
81701823 AGAAATCTTTG
1 AGAAATTTTTG
81701834 A
1 A
81701835 TAAACCTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (11 bp):
AGAAATTTTTG
Found at i:81701844 original size:22 final size:22
Alignment explanation
Indices: 81701801--81701844 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
81701791 TCCACGGTTT
* **
81701801 AGAAATTTTTGAGAAATTTTTG
1 AGAAATCTTTGAGAAACCTTTG
*
81701823 AGAAATCTTTGATAAACCTTTG
1 AGAAATCTTTGAGAAACCTTTG
81701845 GTAAAAACTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (22 bp):
AGAAATCTTTGAGAAACCTTTG
Found at i:81705594 original size:12 final size:12
Alignment explanation
Indices: 81705577--81705601 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81705567 TAGTTAATTC
81705577 TAATTTTCTTTT
1 TAATTTTCTTTT
81705589 TAATTTTCTTTT
1 TAATTTTCTTTT
81705601 T
1 T
81705602 TTCAAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (12 bp):
TAATTTTCTTTT
Found at i:81711843 original size:19 final size:19
Alignment explanation
Indices: 81711819--81711859 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
81711809 AAATCAGCTT
81711819 AACTTGTAACTCAGCCAAC
1 AACTTGTAACTCAGCCAAC
81711838 AACTTGTAACTCAGCCAAC
1 AACTTGTAACTCAGCCAAC
81711857 AAC
1 AAC
81711860 CCACCATCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.32, G:0.10, T:0.20
Consensus pattern (19 bp):
AACTTGTAACTCAGCCAAC
Found at i:81712253 original size:8 final size:8
Alignment explanation
Indices: 81712235--81712274 Score: 71
Period size: 8 Copynumber: 4.9 Consensus size: 8
81712225 ACCGTGACCA
81712235 GTGTGCAAT
1 GTGT-CAAT
81712244 GTGTCAAT
1 GTGTCAAT
81712252 GTGTCAAT
1 GTGTCAAT
81712260 GTGTCAAT
1 GTGTCAAT
81712268 GTGTCAA
1 GTGTCAA
81712275 AACTAACTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 27 0.87
9 4 0.13
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.35
Consensus pattern (8 bp):
GTGTCAAT
Found at i:81718234 original size:25 final size:25
Alignment explanation
Indices: 81718178--81718244 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 25
81718168 TATGGCTTTT
* * **
81718178 ATGAGATTCCCGTTATATAGCCCGG
1 ATGAGCTTCCCGTTATACAGCCCAC
* *
81718203 ATAAGCTTCCCGTTATACAGCTCAC
1 ATGAGCTTCCCGTTATACAGCCCAC
*
81718228 ATGAGCTTCCTGTTATA
1 ATGAGCTTCCCGTTATA
81718245 TGGCTCGAGA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATACAGCCCAC
Found at i:81720541 original size:14 final size:14
Alignment explanation
Indices: 81720524--81720551 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81720514 TAGTGTTTCC
81720524 AAAAACCATTTGTT
1 AAAAACCATTTGTT
81720538 AAAAACCATTTGTT
1 AAAAACCATTTGTT
81720552 TGCGTAAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
AAAAACCATTTGTT
Found at i:81728091 original size:49 final size:49
Alignment explanation
Indices: 81728023--81728167 Score: 175
Period size: 49 Copynumber: 3.0 Consensus size: 49
81728013 TTGTAACTCA
* ** *
81728023 GGCTCCCAATTCATGGTGGTTATATGGTCACGAGTTGAAGTATAACTAG
1 GGCTCCCAATTGACAGTGGTTATACGGTCACGAGTTGAAGTATAACTAG
** *
81728072 GGCTCCTGATTGACAGTGGTTATACGGTCAC-AGGTTGAAATATAACTAG
1 GGCTCCCAATTGACAGTGGTTATACGGTCACGA-GTTGAAGTATAACTAG
* * * *
81728121 GGCTCCCAATTGACAATGGTTATGCAGTCACGAGTTGAAGTGTAACT
1 GGCTCCCAATTGACAGTGGTTATACGGTCACGAGTTGAAGTATAACT
81728168 CGAGCCCCAG
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.01
49 78 0.98
50 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (49 bp):
GGCTCCCAATTGACAGTGGTTATACGGTCACGAGTTGAAGTATAACTAG
Found at i:81729222 original size:16 final size:17
Alignment explanation
Indices: 81729201--81729233 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81729191 AACCCTAAAT
81729201 TATTTTT-TAAAATTTA
1 TATTTTTATAAAATTTA
*
81729217 TATTTTTATCAAATTTA
1 TATTTTTATAAAATTTA
81729234 CCCTATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TATTTTTATAAAATTTA
Found at i:81731215 original size:13 final size:14
Alignment explanation
Indices: 81731193--81731222 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
81731183 CTTGAGTTAG
81731193 AAAATGAAAAAATA
1 AAAATGAAAAAATA
81731207 AAAAT-AAAAAATA
1 AAAATGAAAAAATA
81731220 AAA
1 AAA
81731223 GCATTGAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (14 bp):
AAAATGAAAAAATA
Found at i:81742918 original size:19 final size:18
Alignment explanation
Indices: 81742883--81742918 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
81742873 GAAGCAAGCA
*
81742883 ATGATTGAAGAAATCAGG
1 ATGATTGAAAAAATCAGG
81742901 ATGATTGAAAAGAATCAG
1 ATGATTGAAAA-AATCAG
81742919 ACCTGGAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.47, C:0.06, G:0.25, T:0.22
Consensus pattern (18 bp):
ATGATTGAAAAAATCAGG
Found at i:81746715 original size:13 final size:13
Alignment explanation
Indices: 81746697--81746722 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81746687 AATCAGATAC
81746697 GATTCCTGGTGAG
1 GATTCCTGGTGAG
81746710 GATTCCTGGTGAG
1 GATTCCTGGTGAG
81746723 CACTTAGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.38, T:0.31
Consensus pattern (13 bp):
GATTCCTGGTGAG
Found at i:81751137 original size:22 final size:23
Alignment explanation
Indices: 81751095--81751138 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
81751085 CTAGAATTTA
81751095 TAAAAAATTTGAGAAAGTTTAAT
1 TAAAAAATTTGAGAAAGTTTAAT
* *
81751118 TAAAATATTTGA-AAATTTTAA
1 TAAAAAATTTGAGAAAGTTTAA
81751139 AGTGTATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (23 bp):
TAAAAAATTTGAGAAAGTTTAAT
Found at i:81765001 original size:15 final size:14
Alignment explanation
Indices: 81764977--81765010 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
81764967 TCCATTTTCG
81764977 TTTTTTTATTTTGT
1 TTTTTTTATTTTGT
81764991 TTTTCTTTATTTTGT
1 TTTT-TTTATTTTGT
81765006 TTTTT
1 TTTTT
81765011 AGTTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.85
Consensus pattern (14 bp):
TTTTTTTATTTTGT
Found at i:81765003 original size:20 final size:20
Alignment explanation
Indices: 81764971--81765008 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81764961 TCTTTGTCCA
81764971 TTTTCGTTTTTTTATTTTGT
1 TTTTCGTTTTTTTATTTTGT
*
81764991 TTTTC-TTTATTTTGTTTT
1 TTTTCGTTT-TTTTATTTT
81765009 TTAGTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.05, C:0.05, G:0.08, T:0.82
Consensus pattern (20 bp):
TTTTCGTTTTTTTATTTTGT
Found at i:81765061 original size:24 final size:23
Alignment explanation
Indices: 81764979--81765070 Score: 85
Period size: 24 Copynumber: 3.7 Consensus size: 23
81764969 CATTTTCGTT
*
81764979 TTTTTATTTTGTTTTTCTTTATTTTG
1 TTTTTA-TTTG-TTTTATTTA-TTTG
*
81765005 TTTTTTAGTTTTTTTTATTTATTTG
1 -TTTTTA-TTTGTTTTATTTATTTG
*
81765030 TCCTTTATTTGTTTTATTTATTTG
1 T-TTTTATTTGTTTTATTTATTTG
*
81765054 TTTATTATTGGTTTTAT
1 TTT-TTATTTGTTTTAT
81765071 AATATTTAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
23 1 0.02
24 30 0.54
25 8 0.14
26 8 0.14
27 9 0.16
ACGTcount: A:0.12, C:0.03, G:0.09, T:0.76
Consensus pattern (23 bp):
TTTTTATTTGTTTTATTTATTTG
Found at i:81765069 original size:12 final size:12
Alignment explanation
Indices: 81765001--81765070 Score: 56
Period size: 12 Copynumber: 5.8 Consensus size: 12
81764991 TTTTCTTTAT
81765001 TTTGTTTT-TTA
1 TTTGTTTTATTA
*
81765012 GTTTTTTTTATTTA
1 -TTTGTTTTA-TTA
**
81765026 TTTGTCCT-TTA
1 TTTGTTTTATTA
81765037 TTTGTTTTATTTA
1 TTTGTTTTA-TTA
81765050 TTTG-TTTATTA
1 TTTGTTTTATTA
*
81765061 TTGGTTTTAT
1 TTTGTTTTAT
81765071 AATATTTAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
11 15 0.33
12 16 0.35
13 12 0.26
14 3 0.07
ACGTcount: A:0.13, C:0.03, G:0.10, T:0.74
Consensus pattern (12 bp):
TTTGTTTTATTA
Found at i:81765128 original size:22 final size:22
Alignment explanation
Indices: 81765056--81765128 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
81765046 TTTATTTGTT
*
81765056 TATTATTGGTTTTATAATATTTAAA
1 TATTATT--TTTTAAAAT-TTTAAA
* * *
81765081 T-GTATATTTTAAATGTTTTATAA
1 TATTATTTTTTAAA-ATTTTA-AA
81765104 TATTATTTTTTAAAATTTTAAA
1 TATTATTTTTTAAAATTTTAAA
81765126 TAT
1 TAT
81765129 GTTATGAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
22 15 0.39
23 9 0.24
24 13 0.34
25 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (22 bp):
TATTATTTTTTAAAATTTTAAA
Found at i:81766109 original size:136 final size:136
Alignment explanation
Indices: 81765865--81766131 Score: 516
Period size: 136 Copynumber: 2.0 Consensus size: 136
81765855 TGTGAGTAAA
*
81765865 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
1 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTATATGATAATTTCATATCAGTGTAAA
*
81765930 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTGCATT
66 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACATT
81765995 CACTTC
131 CACTTC
81766001 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTATATGATAATTTCATATCAGTGTAAA
1 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTATATGATAATTTCATATCAGTGTAAA
81766066 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACATT
66 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACATT
81766131 C
131 C
81766132 CCTGAAGTGA
Statistics
Matches: 129, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 129 1.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (136 bp):
AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTATATGATAATTTCATATCAGTGTAAA
ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACATT
CACTTC
Found at i:81769442 original size:20 final size:21
Alignment explanation
Indices: 81769419--81769471 Score: 85
Period size: 20 Copynumber: 2.7 Consensus size: 21
81769409 TTTTATAACA
81769419 AAATATATATTTTTAAA-TTT
1 AAATATATATTTTTAAATTTT
81769439 AAATAT-TATTTTTAAATTTT
1 AAATATATATTTTTAAATTTT
81769459 AAATATA-ATTTTT
1 AAATATATATTTTT
81769472 TAATATTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 10 0.32
20 21 0.68
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
AAATATATATTTTTAAATTTT
Found at i:81769489 original size:20 final size:21
Alignment explanation
Indices: 81769419--81769483 Score: 73
Period size: 20 Copynumber: 3.1 Consensus size: 21
81769409 TTTTATAACA
81769419 AAATAT-ATATTTTTAAATT-T
1 AAATATAAT-TTTTTAAATTAT
* *
81769439 AAATATTA-TTTTTAAATTTT
1 AAATATAATTTTTTAAATTAT
81769459 AAATATAATTTTTTAATATTAT
1 AAATATAATTTTTTAA-ATTAT
81769481 AAA
1 AAA
81769484 AAATTTAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 10 0.26
20 14 0.36
21 8 0.21
22 7 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
AAATATAATTTTTTAAATTAT
Found at i:81769585 original size:23 final size:23
Alignment explanation
Indices: 81769527--81769615 Score: 74
Period size: 22 Copynumber: 3.8 Consensus size: 23
81769517 CTTTCAAAAT
*
81769527 TATTATTTGGTTTATAATATTTTAAA
1 TATTATTT--TTTA-AAAATTTTAAA
* *
81769553 T-GTATATTTTAAAAATTTTAAA
1 TATTATTTTTTAAAAATTTTAAA
*
81769575 TATTATTTTTT-AAATTTTTAAA
1 TATTATTTTTTAAAAATTTTAAA
* *
81769597 AATTATTATTTTTAAAATT
1 TATTATT-TTTTAAAAATT
81769616 ATTTTTAAAG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
22 27 0.52
23 15 0.29
24 5 0.10
25 4 0.08
26 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTATTTTTTAAAAATTTTAAA
Found at i:81769613 original size:15 final size:16
Alignment explanation
Indices: 81769588--81769618 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
81769578 TATTTTTTAA
81769588 ATTTTTAAAAATTATT
1 ATTTTTAAAAATTATT
81769604 ATTTTT-AAAATTATT
1 ATTTTTAAAAATTATT
81769619 TTTAAAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTTTAAAAATTATT
Found at i:81769630 original size:12 final size:12
Alignment explanation
Indices: 81769568--81769624 Score: 53
Period size: 12 Copynumber: 4.6 Consensus size: 12
81769558 ATTTTAAAAA
81769568 TTTTAAATATTAT
1 TTTTAAA-ATTAT
*
81769581 TTTTTAAATT-T
1 TTTTAAAATTAT
**
81769592 TTAAAAATTATTAT
1 TTTTAAA--ATTAT
81769606 TTTTAAAATTAT
1 TTTTAAAATTAT
81769618 TTTTAAA
1 TTTTAAA
81769625 GATATTCAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
11 5 0.14
12 15 0.43
13 9 0.26
14 6 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTAAAATTAT
Found at i:81769662 original size:22 final size:22
Alignment explanation
Indices: 81769546--81769662 Score: 67
Period size: 22 Copynumber: 5.0 Consensus size: 22
81769536 GTTTATAATA
*
81769546 TTTTAAATGTATATTTTAAAA-AT
1 TTTTAAAT-TATA-TTTAAAATTT
* * *
81769569 TTTAAATATTATTTTTTAAATTT
1 TTTTAA-ATTATATTTAAAATTT
**
81769592 TTAAAAATTATTATTTTTAAAATTAT
1 TTTTAAATTA-TA--TTTAAAATT-T
* * *
81769618 TTTTAAA-GATATTCAAACTTTT
1 TTTTAAATTATATTTAAA-ATTT
81769640 TTTTAAATTATATTTAAAATTT
1 TTTTAAATTATATTTAAAATTT
81769662 T
1 T
81769663 AAAAAATAAT
Statistics
Matches: 71, Mismatches: 15, Indels: 17
0.69 0.15 0.17
Matches are distributed among these distances:
22 27 0.38
23 25 0.35
24 4 0.06
25 9 0.13
26 6 0.08
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTTAAATTATATTTAAAATTT
Found at i:81775937 original size:10 final size:10
Alignment explanation
Indices: 81775914--81775966 Score: 58
Period size: 10 Copynumber: 5.5 Consensus size: 10
81775904 AAATATACAT
*
81775914 AAAATATTATA
1 AAAAAATTA-A
81775925 AAAAAATTAA
1 AAAAAATTAA
81775935 AAAAAATTAA
1 AAAAAATTAA
*
81775945 AAAAGA-T-A
1 AAAAAATTAA
81775953 AAAAAA-TAA
1 AAAAAATTAA
81775962 AAAAA
1 AAAAA
81775967 CAAAAAAAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
8 7 0.18
9 7 0.18
10 16 0.42
11 8 0.21
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (10 bp):
AAAAAATTAA
Found at i:81775973 original size:27 final size:27
Alignment explanation
Indices: 81775922--81775990 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
81775912 ATAAAATATT
*
81775922 ATAAAAAAATTAAAAAAAATTAAAAAAG
1 ATAAAAAAA-TAAAAAAAATAAAAAAAG
*
81775950 ATAAAAAAATAAAAAAACA-AAAAAAGG
1 ATAAAAAAATAAAAAAA-ATAAAAAAAG
* *
81775977 ACAAATAAATAAAA
1 ATAAAAAAATAAAA
81775991 TATTATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 26 0.72
28 10 0.28
ACGTcount: A:0.80, C:0.03, G:0.04, T:0.13
Consensus pattern (27 bp):
ATAAAAAAATAAAAAAAATAAAAAAAG
Found at i:81775992 original size:9 final size:8
Alignment explanation
Indices: 81775922--81775974 Score: 61
Period size: 8 Copynumber: 6.1 Consensus size: 8
81775912 ATAAAATATT
81775922 ATAAAAAA
1 ATAAAAAA
81775930 ATTAAAAAAA
1 A-T-AAAAAA
81775940 ATTAAAAAA
1 A-TAAAAAA
81775949 GATAAAAAA
1 -ATAAAAAA
81775958 ATAAAAAA
1 ATAAAAAA
*
81775966 ACAAAAAA
1 ATAAAAAA
81775974 A
1 A
81775975 GGACAAATAA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
8 17 0.41
9 14 0.34
10 10 0.24
ACGTcount: A:0.83, C:0.02, G:0.02, T:0.13
Consensus pattern (8 bp):
ATAAAAAA
Found at i:81776056 original size:11 final size:12
Alignment explanation
Indices: 81776043--81776132 Score: 53
Period size: 12 Copynumber: 7.3 Consensus size: 12
81776033 CAATATCTTT
81776043 AAAAATAATTTA
1 AAAAATAATTTA
81776055 AAAAATAATAGTTTAA
1 AAAAAT-A-A-TTT-A
*
81776071 AAAAATAATTTT
1 AAAAATAATTTA
* *
81776083 TAAAAT-TTTTA
1 AAAAATAATTTA
*
81776094 AAAAATAATATTT
1 AAAAATAAT-TTA
81776107 AAAAAT--TTTA
1 AAAAATAATTTA
*
81776117 AAATATACA-TTA
1 AAAAATA-ATTTA
81776129 AAAA
1 AAAA
81776133 TACTATAAAC
Statistics
Matches: 59, Mismatches: 10, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
10 7 0.12
11 9 0.15
12 18 0.31
13 12 0.20
14 2 0.03
15 4 0.07
16 7 0.12
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (12 bp):
AAAAATAATTTA
Found at i:81776069 original size:15 final size:16
Alignment explanation
Indices: 81776046--81776079 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
81776036 TATCTTTAAA
81776046 AATAATTT-AAAAAAT
1 AATAATTTAAAAAAAT
*
81776061 AATAGTTTAAAAAAAT
1 AATAATTTAAAAAAAT
81776077 AAT
1 AAT
81776080 TTTTAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (16 bp):
AATAATTTAAAAAAAT
Found at i:81776097 original size:24 final size:24
Alignment explanation
Indices: 81776066--81776119 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
81776056 AAAATAATAG
*
81776066 TTTAAAAAAATAAT-TTTTAAAAT
1 TTTAAAAAAATAATATTTAAAAAT
*
81776089 TTTTAAAAAATAATATTTAAAAAT
1 TTTAAAAAAATAATATTTAAAAAT
81776113 TTTAAAA
1 TTTAAAA
81776120 TATACATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TTTAAAAAAATAATATTTAAAAAT
Found at i:81776100 original size:23 final size:23
Alignment explanation
Indices: 81776070--81776119 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
81776060 TAATAGTTTA
* *
81776070 AAAAAATAATTTTTAAAATTTTT
1 AAAAAATAATATTTAAAAATTTT
81776093 AAAAAATAATATTTAAAAATTTT
1 AAAAAATAATATTTAAAAATTTT
81776116 AAAA
1 AAAA
81776120 TATACATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
AAAAAATAATATTTAAAAATTTT
Found at i:81776210 original size:21 final size:22
Alignment explanation
Indices: 81776187--81776234 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 22
81776177 ATATATTTTA
81776187 AATATTTTATAATATTAAAAAAAT
1 AATA-TTTA-AATATTAAAAAAAT
*
81776211 AATATTTAAAT-TTTAAAAAAT
1 AATATTTAAATATTAAAAAAAT
81776232 AAT
1 AAT
81776235 TTTTTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 12 0.52
22 3 0.13
23 4 0.17
24 4 0.17
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
AATATTTAAATATTAAAAAAAT
Found at i:81776257 original size:22 final size:21
Alignment explanation
Indices: 81776235--81776301 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 21
81776225 AAAAAATAAT
81776235 TTTTTAAAAATATATTTAAAA
1 TTTTTAAAAATATATTTAAAA
*
81776256 TTTTAAAAAATAATATTATAAAA
1 TTTTTAAAAAT-ATATT-TAAAA
** *
81776279 CATTTAAAATATACATTTAAAA
1 TTTTTAAAA-ATATATTTAAAA
81776301 T
1 T
81776302 ATTACAAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
21 10 0.27
22 10 0.27
23 15 0.41
24 2 0.05
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (21 bp):
TTTTTAAAAATATATTTAAAA
Found at i:81776264 original size:34 final size:35
Alignment explanation
Indices: 81776195--81776278 Score: 125
Period size: 35 Copynumber: 2.4 Consensus size: 35
81776185 TAAATATTTT
*
81776195 ATAATATTAAAAAAATAATATTTAAATTTTAAAAA
1 ATAATATTATAAAAATAATATTTAAATTTTAAAAA
* *
81776230 ATAATTTTTTAAAAAT-ATATTTAAAATTTTAAAAA
1 ATAATATTATAAAAATAATATTT-AAATTTTAAAAA
81776265 ATAATATTATAAAA
1 ATAATATTATAAAA
81776279 CATTTAAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
34 6 0.14
35 37 0.86
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (35 bp):
ATAATATTATAAAAATAATATTTAAATTTTAAAAA
Found at i:81776284 original size:24 final size:21
Alignment explanation
Indices: 81776240--81776300 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
81776230 ATAATTTTTT
*
81776240 AAAAATATATTTAAAATTTTA
1 AAAAATATATTTAAAAATTTA
81776261 AAAAATAATATTATAAAACATTTA
1 AAAAAT-ATATT-TAAAA-ATTTA
* *
81776285 AAATATACATTTAAAA
1 AAAAATATATTTAAAA
81776301 TATTACAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 6 0.18
22 10 0.29
23 9 0.26
24 9 0.26
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAAATATATTTAAAAATTTA
Found at i:81776294 original size:13 final size:13
Alignment explanation
Indices: 81776278--81776303 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81776268 ATATTATAAA
81776278 ACATTTAAAATAT
1 ACATTTAAAATAT
81776291 ACATTTAAAATAT
1 ACATTTAAAATAT
81776304 TACAAATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
ACATTTAAAATAT
Found at i:81776301 original size:56 final size:52
Alignment explanation
Indices: 81776169--81776304 Score: 130
Period size: 56 Copynumber: 2.4 Consensus size: 52
81776159 AGGTCATACC
* * *
81776169 TTTAAAAAATATATTTTAAATATTTTATAATATTAAAAAAATAATATTTAAAT
1 TTTAAAAAATA-ATTTAAAATATTTTAAAATATTAAAAAAATAATATTTAAAA
*
81776222 TTTAAAAAATAATTTTTTAAAAATATATTTAAAAT-TTTAAAAAATAATATTATAAAACA
1 TTTAAAAAATAA---TTT-AAAATAT-TTTAAAATATTAAAAAAATAATATT-T-AAA-A
*
81776281 TTTAAAATATACATTTAAAATATT
1 TTTAAAAAATA-ATTTAAAATATT
81776305 ACAAATAGAA
Statistics
Matches: 69, Mismatches: 5, Indels: 16
0.77 0.06 0.18
Matches are distributed among these distances:
52 1 0.01
53 11 0.16
55 4 0.06
56 28 0.41
57 11 0.16
58 3 0.04
59 10 0.14
60 1 0.01
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (52 bp):
TTTAAAAAATAATTTAAAATATTTTAAAATATTAAAAAAATAATATTTAAAA
Found at i:81776321 original size:44 final size:44
Alignment explanation
Indices: 81776237--81776321 Score: 102
Period size: 44 Copynumber: 1.9 Consensus size: 44
81776227 AAAATAATTT
* * *
81776237 TTTAAAAATATATTTAAAATTTTAAAAAATAATATTATAAAACA
1 TTTAAAAATACATTTAAAATATTAAAAAATAATATAATAAAACA
*
81776281 TTTAAAATATACATTTAAAATATT-ACAAATAGA-ATAATAAA
1 TTTAAAA-ATACATTTAAAATATTAAAAAATA-ATATAATAAA
81776322 CAAATAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
44 20 0.57
45 15 0.43
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (44 bp):
TTTAAAAATACATTTAAAATATTAAAAAATAATATAATAAAACA
Found at i:81776337 original size:13 final size:15
Alignment explanation
Indices: 81776305--81776342 Score: 53
Period size: 13 Copynumber: 2.6 Consensus size: 15
81776295 TTAAAATATT
81776305 ACAAATAGAATAATAA
1 ACAAATA-AATAATAA
81776321 ACAAATAAAT-A-AA
1 ACAAATAAATAATAA
81776334 ACAAATAAA
1 ACAAATAAA
81776343 GGACAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 11 0.50
14 1 0.05
15 3 0.14
16 7 0.32
ACGTcount: A:0.74, C:0.08, G:0.03, T:0.16
Consensus pattern (15 bp):
ACAAATAAATAATAA
Found at i:81776341 original size:24 final size:23
Alignment explanation
Indices: 81776320--81776366 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
81776310 TAGAATAATA
81776320 AACAAATAAATAAAACAAATAAAG
1 AACAAATAAA-AAAACAAATAAAG
*
81776344 GACAAATAAAAAAACTAAA-AAAG
1 AACAAATAAAAAAAC-AAATAAAG
81776367 TAAATAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.74, C:0.09, G:0.06, T:0.11
Consensus pattern (23 bp):
AACAAATAAAAAAACAAATAAAG
Found at i:81780745 original size:3 final size:3
Alignment explanation
Indices: 81780737--81780773 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
81780727 TTTCAGCTTT
* *
81780737 TTC TTC TTC TTC TTC CTA TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
81780774 CTGTTAAAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:81785511 original size:39 final size:40
Alignment explanation
Indices: 81785385--81785528 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
81785375 ACTACTCGCT
* * *
81785385 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
* *
81785425 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* * *
81785465 CAAATGCCTTCGGGAATTAGCCCGGA-TTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
*
81785504 CAGATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
81785529 TTATCATCCA
Statistics
Matches: 93, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 33 0.35
40 58 0.62
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
Found at i:81788813 original size:29 final size:29
Alignment explanation
Indices: 81788771--81788869 Score: 137
Period size: 29 Copynumber: 3.4 Consensus size: 29
81788761 CATGAAATTG
81788771 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
81788800 GCACTAAGTGTGCGGGTTCAAGTTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* * * *
81788829 GCACTAAGTGTGTGAGTTC-GATTATATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
81788857 ACACTAAGTGTGC
1 GCACTAAGTGTGC
81788870 AGACTTACTA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
28 17 0.27
29 45 0.73
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:81796784 original size:39 final size:38
Alignment explanation
Indices: 81796691--81796795 Score: 131
Period size: 39 Copynumber: 2.7 Consensus size: 38
81796681 TACTCGCTCA
* *
81796691 AATGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGTTA-AGTAACTAGCAC
* *
81796730 AATTGCCTTCGGGACTTAGCCCGGATT-AGTCACTAGCGC
1 AA-TGCCTTCGGGACTTAGCCCGG-TTAAGTAACTAGCAC
81796769 AGATGCCTTCGGGACTTAGCCCGGTTA
1 A-ATGCCTTCGGGACTTAGCCCGGTTA
81796796 TCATCCAAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
38 2 0.03
39 33 0.57
40 21 0.36
41 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (38 bp):
AATGCCTTCGGGACTTAGCCCGGTTAAGTAACTAGCAC
Found at i:81803493 original size:47 final size:47
Alignment explanation
Indices: 81803441--81804232 Score: 1197
Period size: 47 Copynumber: 16.6 Consensus size: 47
81803431 GATAATTGTG
* *
81803441 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
81803488 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
81803535 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
81803584 ATGTGAAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
81803631 ATATGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
81803680 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
81803729 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
81803776 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
81803825 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
81803874 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
81803921 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
81803970 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
81804017 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
81804064 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
81804113 ATGTGAAAGTGCATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
81804160 ATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
81804207 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
81804233 TCCCGAAGGG
Statistics
Matches: 693, Mismatches: 42, Indels: 20
0.92 0.06 0.03
Matches are distributed among these distances:
47 373 0.54
49 320 0.46
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:81803548 original size:96 final size:96
Alignment explanation
Indices: 81803441--81804232 Score: 1262
Period size: 96 Copynumber: 8.3 Consensus size: 96
81803431 GATAATTGTG
81803441 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
81803504 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
*
81803535 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
81803600 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
* * *
81803631 ATATGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* **
81803696 ATATGTGATAAGGCCTAATGGCTGATGTGATGA
64 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
81803729 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
81803792 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
64 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
81803825 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
81803890 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
81803921 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
81803986 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
*
81804017 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* **
81804080 ATATGTGATAAGGCCTAATGGCTGATGTGATGA
64 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
81804113 ATGTGAAAGTG--CATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
81804176 ATGTGACAAGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
81804207 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
81804233 TCCCGAAGGG
Statistics
Matches: 657, Mismatches: 31, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
94 101 0.15
95 3 0.00
96 465 0.71
98 88 0.13
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:81803596 original size:145 final size:144
Alignment explanation
Indices: 81803441--81804232 Score: 1299
Period size: 145 Copynumber: 5.5 Consensus size: 144
81803431 GATAATTGTG
* * * *
81803441 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATA
81803505 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
81803570 GGCCGATGTGATGA
131 GGCCGATGTGATGA
* *
81803584 ATGTGAAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATAT
81803649 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
81803714 TGGCTGATGTGATGA
130 TGGCCGATGTGATGA
81803729 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATAT
81803794 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
81803859 TGGCCGATGTGATGA
130 TGGCCGATGTGATGA
81803874 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATAT
* *
81803939 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
81804002 TAGCCGATGTGATGA
130 TGGCCGATGTGATGA
* * *
81804017 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATAT
* ** *
81804082 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG--CATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
81804145 TAGCCGATGTGATGA
130 TGGCCGATGTGATGA
* * * * *
81804160 ATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG-TATAAA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATA
81804224 TGTGATAAG
66 TGTGATAAG
81804233 TCCCGAAGGG
Statistics
Matches: 621, Mismatches: 26, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
141 14 0.02
143 276 0.44
145 331 0.53
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (144 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATGA
Found at i:81808693 original size:18 final size:18
Alignment explanation
Indices: 81808670--81808704 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81808660 GTAGGTTTCC
*
81808670 AAAAATAGAAATAGAAAT
1 AAAAATAAAAATAGAAAT
*
81808688 AAAAATAAAAATGGAAA
1 AAAAATAAAAATAGAAA
81808705 CTTGTAATCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.14
Consensus pattern (18 bp):
AAAAATAAAAATAGAAAT
Found at i:81815998 original size:16 final size:16
Alignment explanation
Indices: 81815974--81816011 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
81815964 ATTTAGCCAT
81815974 TTTTATTTTTA-TTGTAA
1 TTTT-TTTTTAGTT-TAA
81815991 TTTTTTTTTAGTTTAA
1 TTTTTTTTTAGTTTAA
81816007 TTTTT
1 TTTTT
81816012 GCATTCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.76
Consensus pattern (16 bp):
TTTTTTTTTAGTTTAA
Found at i:81818816 original size:23 final size:23
Alignment explanation
Indices: 81818784--81818847 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
81818774 GATGGATTAT
*
81818784 ATTATTCTGGTGTGTTTTAGAGG
1 ATTATACTGGTGTGTTTTAGAGG
*
81818807 ATTATACTGGTGTGTTTTGGAGG
1 ATTATACTGGTGTGTTTTAGAGG
*
81818830 ATTATACCGGTGTGTTTT
1 ATTATACTGGTGTGTTTT
81818848 GGTTGGACAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.17, C:0.06, G:0.30, T:0.47
Consensus pattern (23 bp):
ATTATACTGGTGTGTTTTAGAGG
Found at i:81819070 original size:23 final size:23
Alignment explanation
Indices: 81819040--81819126 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 23
81819030 GCTTTACTGA
* *
81819040 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTGTGTGTCGTATT
*
81819063 TCAGGCACCTTGTGTGTCGCA--
1 TCAGGCACCTTGTGTGTCGTATT
* *
81819084 GCAGGCACCTCGTGTGTCG--TT
1 TCAGGCACCTTGTGTGTCGTATT
*
81819105 TCAGGCA-CTTTTGTGTCGTATT
1 TCAGGCACCTTGTGTGTCGTATT
81819127 CTGATCAGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
20 9 0.17
21 23 0.44
22 2 0.04
23 18 0.35
ACGTcount: A:0.14, C:0.23, G:0.26, T:0.37
Consensus pattern (23 bp):
TCAGGCACCTTGTGTGTCGTATT
Found at i:81826465 original size:15 final size:15
Alignment explanation
Indices: 81826447--81826478 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81826437 CTGATCTTTT
81826447 TTTTCCTTTTTCTTA
1 TTTTCCTTTTTCTTA
*
81826462 TTTTTCTTTTTCTTA
1 TTTTCCTTTTTCTTA
81826477 TT
1 TT
81826479 CTTATACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTCCTTTTTCTTA
Found at i:81826471 original size:21 final size:20
Alignment explanation
Indices: 81826443--81826483 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
81826433 TTTACTGATC
*
81826443 TTTTTTTTCCTTTTTCTTAT
1 TTTTTTTTCCTTATTCTTAT
*
81826463 TTTTCTTTTTCTTATTCTTAT
1 TTTT-TTTTCCTTATTCTTAT
81826484 ACTTTAGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTTTTTCCTTATTCTTAT
Found at i:81826552 original size:10 final size:11
Alignment explanation
Indices: 81826524--81826561 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
81826514 CTACTATTTC
81826524 TATTATTTTTAG
1 TATT-TTTTTAG
81826536 TATTTTTTTAG
1 TATTTTTTTAG
*
81826547 TATTTTTTTAC
1 TATTTTTTTAG
81826558 TATT
1 TATT
81826562 ACCTTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 21 0.84
12 4 0.16
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.71
Consensus pattern (11 bp):
TATTTTTTTAG
Found at i:81831181 original size:13 final size:13
Alignment explanation
Indices: 81831165--81831189 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81831155 TTTTTCAAGA
81831165 AAATTCTTTAATC
1 AAATTCTTTAATC
81831178 AAATTCTTTAAT
1 AAATTCTTTAAT
81831190 TGAACAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (13 bp):
AAATTCTTTAATC
Found at i:81833622 original size:16 final size:16
Alignment explanation
Indices: 81833597--81833627 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81833587 ATAATATCCC
81833597 CTAACAGTCAAATTCT
1 CTAACAGTCAAATTCT
*
81833613 CTAACGGTCAAATTC
1 CTAACAGTCAAATTC
81833628 CCAACGACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (16 bp):
CTAACAGTCAAATTCT
Found at i:81836431 original size:16 final size:16
Alignment explanation
Indices: 81836410--81836446 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
81836400 CTAAAACCCT
* *
81836410 CAAACAAAATCTTAAA
1 CAAACAAAACCCTAAA
81836426 CAAACAAAACCCTAAA
1 CAAACAAAACCCTAAA
81836442 CAAAC
1 CAAAC
81836447 CTTAAGGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.62, C:0.27, G:0.00, T:0.11
Consensus pattern (16 bp):
CAAACAAAACCCTAAA
Found at i:81838534 original size:13 final size:13
Alignment explanation
Indices: 81838518--81838548 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
81838508 CCTTCTCCTT
81838518 CCCTTTCCCCTAC
1 CCCTTTCCCCTAC
*
81838531 CCCTTTCCCTTAC
1 CCCTTTCCCCTAC
81838544 CCCTT
1 CCCTT
81838549 CCCTTTCCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.06, C:0.58, G:0.00, T:0.35
Consensus pattern (13 bp):
CCCTTTCCCCTAC
Found at i:81838534 original size:31 final size:31
Alignment explanation
Indices: 81838499--81838557 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
81838489 CCATTCTTCT
*
81838499 CCCCTTTCCCCTT-CTCCTTCCCTTTCCCCTA
1 CCCCTTT-CCCTTACCCCTTCCCTTTCCCCTA
81838530 CCCCTTTCCCTTACCCCTTCCCTTTCCC
1 CCCCTTTCCCTTACCCCTTCCCTTTCCC
81838558 GTTTTGAAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 5 0.19
31 21 0.81
ACGTcount: A:0.03, C:0.59, G:0.00, T:0.37
Consensus pattern (31 bp):
CCCCTTTCCCTTACCCCTTCCCTTTCCCCTA
Found at i:81838550 original size:12 final size:12
Alignment explanation
Indices: 81838500--81838553 Score: 56
Period size: 12 Copynumber: 4.4 Consensus size: 12
81838490 CATTCTTCTC
*
81838500 CCCTTTCCCCTT
1 CCCTTACCCCTT
*
81838512 CTCCTT-CCCTTT
1 C-CCTTACCCCTT
*
81838524 CCCCTACCCCTTT
1 CCCTTACCCC-TT
81838537 CCCTTACCCCTT
1 CCCTTACCCCTT
81838549 CCCTT
1 CCCTT
81838554 TCCCGTTTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 3 0.09
12 17 0.49
13 15 0.43
ACGTcount: A:0.04, C:0.57, G:0.00, T:0.39
Consensus pattern (12 bp):
CCCTTACCCCTT
Found at i:81838554 original size:18 final size:18
Alignment explanation
Indices: 81838500--81838557 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
81838490 CATTCTTCTC
81838500 CCCTTTCCCCTTCTCC-TT
1 CCCTTTCCCCTTC-CCTTT
*
81838518 CCCTTTCCCCTACCCCTTT
1 CCCTTTCCCCT-TCCCTTT
*
81838537 CCCTTACCCCTTCCCTTT
1 CCCTTTCCCCTTCCCTTT
81838555 CCC
1 CCC
81838558 GTTTTGAAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 22 0.63
19 13 0.37
ACGTcount: A:0.03, C:0.59, G:0.00, T:0.38
Consensus pattern (18 bp):
CCCTTTCCCCTTCCCTTT
Found at i:81841112 original size:34 final size:35
Alignment explanation
Indices: 81841058--81841124 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
81841048 CAAACACCAG
*
81841058 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
81841093 AAAACATTTTCTAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
81841125 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:81842766 original size:9 final size:9
Alignment explanation
Indices: 81842735--81842785 Score: 57
Period size: 9 Copynumber: 5.7 Consensus size: 9
81842725 TTCATGCTGC
81842735 TCCTCTTGT
1 TCCTCTTGT
*
81842744 TCATCTTGT
1 TCCTCTTGT
* *
81842753 ACCTCCTGT
1 TCCTCTTGT
* *
81842762 TCCTCGTGA
1 TCCTCTTGT
81842771 TCCTCTTGT
1 TCCTCTTGT
81842780 TCCTCT
1 TCCTCT
81842786 ACATTTCCTC
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.06, C:0.35, G:0.12, T:0.47
Consensus pattern (9 bp):
TCCTCTTGT
Found at i:81856280 original size:41 final size:40
Alignment explanation
Indices: 81856190--81856409 Score: 240
Period size: 41 Copynumber: 5.6 Consensus size: 40
81856180 TCCTCGTTCA
* * * * *
81856190 AATGCCTTCGGGACAT-AGCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
81856228 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81856267 ACACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 A-A-TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81856309 AAT--CTTC-GGACTTAACCC-GATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
81856345 AATTCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
81856385 AAGGCCTTC-GGATCTTAATCCGGAT
1 AATGCCTTCGGGA-CTTAACCCGGAT
81856410 ATATTCACTT
Statistics
Matches: 160, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
36 21 0.13
37 11 0.07
38 24 0.15
39 32 0.20
40 35 0.22
41 36 0.22
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:81856364 original size:76 final size:79
Alignment explanation
Indices: 81856192--81856385 Score: 238
Period size: 76 Copynumber: 2.5 Consensus size: 79
81856182 CTCGTTCAAA
* * * *
81856192 TGCCTTCGGGACAT-AGCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATTTA
1 TGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAT-CCTTCGGGACATAACCCGGATTTA
81856256 ACAACTCGCACACAC
65 ACAACTCGCACACAC
* *
81856271 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAAT-CTTC-GGACTTAACCC-GATTTA
1 TGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATCCTTCGGGACATAACCCGGATTTA
*
81856333 ATAACTCGCACGA-A-
65 ACAACTCGCAC-ACAC
* *
81856347 TTCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAA
1 TGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAA
81856386 AGGCCTTCGG
Statistics
Matches: 102, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
75 2 0.02
76 34 0.33
77 17 0.17
78 11 0.11
79 17 0.17
80 18 0.18
81 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (79 bp):
TGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATCCTTCGGGACATAACCCGGATTTAA
CAACTCGCACACAC
Found at i:81856456 original size:40 final size:41
Alignment explanation
Indices: 81856380--81856456 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 41
81856370 TTAGTATCTC
* * *
81856380 GCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAACCCGGACACATTCACTTA
*
81856421 GCACAAA-GCCTTCGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTCGGATCTTAACCCGGACA-CATTCA
81856457 ATTAATCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
39 10 0.32
40 14 0.45
41 7 0.23
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAACCCGGACACATTCACTTA
Found at i:81859932 original size:40 final size:39
Alignment explanation
Indices: 81859834--81860096 Score: 294
Period size: 40 Copynumber: 6.6 Consensus size: 39
81859824 TCCTCGTTCA
* * * * *
81859834 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
81859873 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
81859912 AACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AA-TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
81859952 GAATGCCTTCGGGACTTAACCCAGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * *
81859992 GAATTCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
81860032 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
81860073 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81860097 CAGCATTCAA
Statistics
Matches: 195, Mismatches: 24, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
39 39 0.20
40 146 0.75
41 10 0.05
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:81862777 original size:43 final size:43
Alignment explanation
Indices: 81862715--81862872 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 43
81862705 GTACAATATC
* * * *
81862715 ATATCCCAGATATGGTCTTAGATGTTATCACATATCGATGCCA
1 ATATCCCAGACATGGTCTTACACGTAATCACATATCGATGCCA
* * *
81862758 TTATCCCAGACA-GGCTCTTACACGTAATCGA-TTAACGATGCCA
1 ATATCCCAGACATGG-TCTTACACGTAATC-ACATATCGATGCCA
*
81862801 ATATCCCAGACATGGTCTTACACGTAATCACA-ATACAATGCCA
1 ATATCCCAGACATGGTCTTACACGTAATCACATAT-CGATGCCA
* *
81862844 ATATCCCAGACATAGTCTTACATGTAATC
1 ATATCCCAGACATGGTCTTACACGTAATC
81862873 TCATCTCGGC
Statistics
Matches: 97, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
42 4 0.04
43 90 0.93
44 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (43 bp):
ATATCCCAGACATGGTCTTACACGTAATCACATATCGATGCCA
Found at i:81862863 original size:86 final size:86
Alignment explanation
Indices: 81862715--81862872 Score: 212
Period size: 86 Copynumber: 1.8 Consensus size: 86
81862705 GTACAATATC
* * * * * * *
81862715 ATATCCCAGATATGGTCTTAGATGTTATCACATATCGATGCCATTATCCCAGACAGGCTCTTACA
1 ATATCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATATCCCAGACAAGCTCTTACA
81862780 CGTAATCGATTAACGATGCCA
66 CGTAATCGATTAACGATGCCA
81862801 ATATCCCAGACATGGTCTTACACGTAATCACA-ATACAATGCCAATATCCCAGACATAG-TCTTA
1 ATATCCCAGACATGGTCTTACACGTAATCACATAT-CAATGCCAATATCCCAGACA-AGCTCTTA
*
81862864 CATGTAATC
64 CACGTAATC
81862873 TCATCTCGGC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 2 0.03
86 59 0.95
87 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (86 bp):
ATATCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATATCCCAGACAAGCTCTTACA
CGTAATCGATTAACGATGCCA
Found at i:81863985 original size:36 final size:36
Alignment explanation
Indices: 81863934--81864043 Score: 166
Period size: 36 Copynumber: 3.1 Consensus size: 36
81863924 TTTTCTCAAA
* * *
81863934 TTAACCACTTAAATGACAACATTAGCATACAAAACT
1 TTAACCACTTAAATGATAAAATTAGCATACGAAACT
* *
81863970 TTAGCCACTTAAATGATAAAATTCGCATACGAAACT
1 TTAACCACTTAAATGATAAAATTAGCATACGAAACT
*
81864006 TTAACCACTTAAATGATAAAATTAGCATATGAAACT
1 TTAACCACTTAAATGATAAAATTAGCATACGAAACT
81864042 TT
1 TT
81864044 CACACATACA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 66 1.00
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29
Consensus pattern (36 bp):
TTAACCACTTAAATGATAAAATTAGCATACGAAACT
Found at i:81876449 original size:17 final size:16
Alignment explanation
Indices: 81876399--81876456 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 16
81876389 GGGTGAGAAG
81876399 TAAAAGTTTAGGGGAAAAA
1 TAAAAGTTTA-GGG--AAA
*
81876418 TAAAAAGTTTTGGGAAA
1 T-AAAAGTTTAGGGAAA
81876435 TAAAAGTTTGAGGGAAA
1 TAAAAGTTT-AGGGAAA
81876452 GTAAA
1 -TAAA
81876457 TAGGGGGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 8 0.24
17 10 0.29
18 4 0.12
19 4 0.12
20 8 0.24
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (16 bp):
TAAAAGTTTAGGGAAA
Found at i:81878879 original size:18 final size:18
Alignment explanation
Indices: 81878839--81878885 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
81878829 CCTCCGGCTG
* * *
81878839 TGGCTCGGGCTCGGGCTC
1 TGGCTCTGGCTCAGGATC
*
81878857 GGGCTCTGGCTCAGGATC
1 TGGCTCTGGCTCAGGATC
81878875 TGGCTCTGGCT
1 TGGCTCTGGCT
81878886 TGGCCTCTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.04, C:0.30, G:0.40, T:0.26
Consensus pattern (18 bp):
TGGCTCTGGCTCAGGATC
Found at i:81878882 original size:6 final size:6
Alignment explanation
Indices: 81878834--81878889 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
81878824 CTTAACCTCC
* * * * * *
81878834 GGCTGT GGCTCG GGCTCG GGCTCG GGCTCT GGCTCA GGATCT GGCTCT
1 GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT
81878882 GGCT-T GGC
1 GGCTCT GGC
81878890 CTCTATATCG
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
5 4 0.09
6 39 0.91
ACGTcount: A:0.04, C:0.29, G:0.43, T:0.25
Consensus pattern (6 bp):
GGCTCT
Found at i:81879313 original size:45 final size:45
Alignment explanation
Indices: 81879249--81879338 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
81879239 GTGCGTTAGT
*
81879249 GCACCACAATTGAGAATGAATGTAGGCAGACGAGGGTATAATAGC
1 GCACCACAATTGAGAATGAATGTAAGCAGACGAGGGTATAATAGC
81879294 GCACCACAATTGAGAATGAATGTAAGCAGACGAGGGTATAATAGC
1 GCACCACAATTGAGAATGAATGTAAGCAGACGAGGGTATAATAGC
81879339 TGCAATTTTC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.39, C:0.16, G:0.28, T:0.18
Consensus pattern (45 bp):
GCACCACAATTGAGAATGAATGTAAGCAGACGAGGGTATAATAGC
Found at i:81881217 original size:17 final size:17
Alignment explanation
Indices: 81881195--81881227 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
81881185 AAAAGTTATT
81881195 TTTTCGTATTTTATTTC
1 TTTTCGTATTTTATTTC
81881212 TTTTCGTATTTTATTT
1 TTTTCGTATTTTATTT
81881228 TTTCATTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.73
Consensus pattern (17 bp):
TTTTCGTATTTTATTTC
Found at i:81881261 original size:17 final size:16
Alignment explanation
Indices: 81881193--81881262 Score: 68
Period size: 16 Copynumber: 4.3 Consensus size: 16
81881183 CAAAAAGTTA
*
81881193 TTTTTTCGTATTTTAT
1 TTTTTTAGTATTTTAT
*
81881209 TTCTTTTCGTATTTTAT
1 TT-TTTTAGTATTTTAT
* * ***
81881226 TTTTTCATTAAGATAT
1 TTTTTTAGTATTTTAT
81881242 TTTTTTAGTATTTTAT
1 TTTTTTAGTATTTTAT
81881258 TTTTT
1 TTTTT
81881263 ATTTTATTTT
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
16 26 0.62
17 16 0.38
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (16 bp):
TTTTTTAGTATTTTAT
Found at i:81881786 original size:16 final size:16
Alignment explanation
Indices: 81881752--81881804 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
81881742 TGTCGCCTGC
* *
81881752 TTCTCCTTCTCTT-TT
1 TTCTTCTTCCCTTCTT
81881767 TTCTTCTTCCCTTCTT
1 TTCTTCTTCCCTTCTT
81881783 TTCTTCTTCTCCTTC-T
1 TTCTTCTTC-CCTTCTT
81881799 TTCTTC
1 TTCTTC
81881805 CTTCTTTCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
15 11 0.32
16 18 0.53
17 5 0.15
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (16 bp):
TTCTTCTTCCCTTCTT
Found at i:81883491 original size:17 final size:17
Alignment explanation
Indices: 81883457--81883491 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
81883447 TCTCCCCTAT
*
81883457 TATTATTATCATTTTTA
1 TATTATTATCATTCTTA
*
81883474 TATTATTATTATTCTTA
1 TATTATTATCATTCTTA
81883491 T
1 T
81883492 TAGTACATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTATTATCATTCTTA
Found at i:81887743 original size:19 final size:19
Alignment explanation
Indices: 81887719--81887763 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
81887709 CTCTTTAGTC
*
81887719 TTGCATT-CATCTCATGCAT
1 TTGCATTACATCGCAT-CAT
81887738 TTGCATTACATCGCATCAT
1 TTGCATTACATCGCATCAT
*
81887757 GTGCATT
1 TTGCATT
81887764 GAATTTTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.40
Consensus pattern (19 bp):
TTGCATTACATCGCATCAT
Found at i:81889509 original size:5 final size:5
Alignment explanation
Indices: 81889499--81889524 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
81889489 AATATTTACG
81889499 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
81889525 TTTTAAATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:81889846 original size:94 final size:95
Alignment explanation
Indices: 81889676--81889847 Score: 208
Period size: 94 Copynumber: 1.8 Consensus size: 95
81889666 TCTCTCCCCT
* * *
81889676 AAAAGTTTTTGAAAATTTTCATTATACACTTTTTTGTTTTTTGAAAATTTTAATTAAACCCTTCA
1 AAAAGTTTTTGAAAAATTTCATTAGACACTTTTTTGTTTTTTGAAAATTTTAATTAAACCCTTAA
* **
81889741 ATTTTTTAAAAAATTCTTATTAAACTTATC
66 AATTTCAAAAAAATTCTTATTAAACTTATC
* * *
81889771 AAAA-TTTTT-AAAAATTTCAATTAGATACTTTATTT-TTTTTT-TAAATTTTGATTAAAACCCT
1 AAAAGTTTTTGAAAAATTTC-ATTAGACACTTT-TTTGTTTTTTGAAAATTTTAATT-AAACCCT
81889832 TAAAATTTCAAAAAAA
63 TAAAATTTCAAAAAAA
81889848 ATTAGTTAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
93 18 0.28
94 40 0.62
95 7 0.11
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.48
Consensus pattern (95 bp):
AAAAGTTTTTGAAAAATTTCATTAGACACTTTTTTGTTTTTTGAAAATTTTAATTAAACCCTTAA
AATTTCAAAAAAATTCTTATTAAACTTATC
Found at i:81890105 original size:58 final size:58
Alignment explanation
Indices: 81890035--81890147 Score: 181
Period size: 58 Copynumber: 1.9 Consensus size: 58
81890025 TAAGTTTTTT
* * *
81890035 TCGAGTTAATTTGTGACATCAATTCAATTAACGATATTATTAATATACGAACAATTTA
1 TCGAGTTAATTTGTGACACCAATTCAATTAACGACATTATCAATATACGAACAATTTA
* *
81890093 TCGAGTTGATTTGTGACACCAATTTAATTAACGACATTATCAATATACGAACAAT
1 TCGAGTTAATTTGTGACACCAATTCAATTAACGACATTATCAATATACGAACAAT
81890148 GTGGGAATCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (58 bp):
TCGAGTTAATTTGTGACACCAATTCAATTAACGACATTATCAATATACGAACAATTTA
Found at i:81898400 original size:12 final size:12
Alignment explanation
Indices: 81898383--81898409 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
81898373 ACATACCATC
81898383 GGAACAAATTGT
1 GGAACAAATTGT
81898395 GGAACAAATTGT
1 GGAACAAATTGT
81898407 GGA
1 GGA
81898410 TCCCCAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.30, T:0.22
Consensus pattern (12 bp):
GGAACAAATTGT
Found at i:81900819 original size:24 final size:24
Alignment explanation
Indices: 81900766--81900811 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
81900756 TTTTTGTAGA
* *
81900766 ATATTTAGTATTTATTAGTATAAT
1 ATATTTAGCATTTATTAGCATAAT
81900790 ATATTTAGCATTTATTAGCATA
1 ATATTTAGCATTTATTAGCATA
81900812 GTTTATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (24 bp):
ATATTTAGCATTTATTAGCATAAT
Found at i:81904066 original size:39 final size:39
Alignment explanation
Indices: 81904012--81904090 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
81904002 GGAGGTTAAG
81904012 TAAGGTTAAACAATTTAACTTCGTTATCATCCATTAGGC
1 TAAGGTTAAACAATTTAACTTCGTTATCATCCATTAGGC
* *
81904051 TAAGGTTAAACAATTTATCTTCGTTATCCTCCATTAGGC
1 TAAGGTTAAACAATTTAACTTCGTTATCATCCATTAGGC
81904090 T
1 T
81904091 TCACTAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (39 bp):
TAAGGTTAAACAATTTAACTTCGTTATCATCCATTAGGC
Found at i:81907816 original size:35 final size:34
Alignment explanation
Indices: 81907763--81907836 Score: 148
Period size: 34 Copynumber: 2.2 Consensus size: 34
81907753 TTTCTACAAA
81907763 AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
1 AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
81907797 AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
1 AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
81907831 AAAATA
1 AAAATA
81907837 AATTTGATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (34 bp):
AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
Found at i:81907999 original size:16 final size:17
Alignment explanation
Indices: 81907980--81908012 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
81907970 TGACTTTTTA
*
81907980 TAAAAATAA-TTTTTGG
1 TAAAAAAAACTTTTTGG
81907996 TAAAAAAAACTTTTTGG
1 TAAAAAAAACTTTTTGG
81908013 ACTAATTGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.39
Consensus pattern (17 bp):
TAAAAAAAACTTTTTGG
Found at i:81915413 original size:17 final size:17
Alignment explanation
Indices: 81915369--81915415 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
81915359 CGCTTCCTAA
*
81915369 ATAATAGA-AATTT-TT
1 ATAATAGATATTTTATT
*
81915384 ATAA-AGATGTTTTATT
1 ATAATAGATATTTTATT
81915400 ATAATAGATATTTTAT
1 ATAATAGATATTTTAT
81915416 ATATCATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 3 0.12
15 7 0.27
16 6 0.23
17 10 0.38
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (17 bp):
ATAATAGATATTTTATT
Found at i:81915418 original size:16 final size:16
Alignment explanation
Indices: 81915369--81915418 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
81915359 CGCTTCCTAA
*
81915369 ATAATAGAAATTTT-T
1 ATAATAGATATTTTAT
*
81915384 ATAA-AGATGTTTTATT
1 ATAATAGATATTTTA-T
81915400 ATAATAGATATTTTAT
1 ATAATAGATATTTTAT
81915416 ATA
1 ATA
81915419 TCATAACTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 7 0.24
15 4 0.14
16 9 0.31
17 9 0.31
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (16 bp):
ATAATAGATATTTTAT
Found at i:81917487 original size:13 final size:13
Alignment explanation
Indices: 81917469--81917496 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81917459 ACAAAATTGG
81917469 AAAGATGAAAAAT
1 AAAGATGAAAAAT
81917482 AAAGATGAAAAAT
1 AAAGATGAAAAAT
81917495 AA
1 AA
81917497 TAAAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAGATGAAAAAT
Found at i:81918569 original size:25 final size:26
Alignment explanation
Indices: 81918517--81918569 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
81918507 GAGCTTTCCA
* * *
81918517 ATTAAAGACTCTTTGTGAGCTTCTTG
1 ATTAAAGACTCTCTGTGAGCTACGTG
*
81918543 ATTAATGACTCTCTG-GAGCTACGTG
1 ATTAAAGACTCTCTGTGAGCTACGTG
81918568 AT
1 AT
81918570 ATGGCTTGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTAAAGACTCTCTGTGAGCTACGTG
Found at i:81918599 original size:25 final size:25
Alignment explanation
Indices: 81918568--81918625 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
81918558 GAGCTACGTG
*
81918568 ATATGGCT-TGCTTGAACTTCCCGAT
1 ATATGGCTAT-CTGGAACTTCCCGAT
*
81918593 ATATGGCTATCTGGAGCTTCCCGAT
1 ATATGGCTATCTGGAACTTCCCGAT
81918618 -TAATGGCT
1 AT-ATGGCT
81918626 CTTCGAAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 1 0.03
25 27 0.93
26 1 0.03
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (25 bp):
ATATGGCTATCTGGAACTTCCCGAT
Found at i:81918699 original size:24 final size:24
Alignment explanation
Indices: 81918584--81918715 Score: 67
Period size: 24 Copynumber: 5.4 Consensus size: 24
81918574 CTTGCTTGAA
* *
81918584 CTTCCCGATATATGGCTATC-TGGAG
1 CTTCCCGTTA-ATGGCTCTCAT-GAG
81918609 CTTCCCGATTAATGGCTCT--TCGAAG
1 CTTCCCG-TTAATGGCTCTCAT-G-AG
* * *
81918634 -TTACCCATTATTGGCTCGCATGAG
1 CTT-CCCGTTAATGGCTCTCATGAG
** * *
81918658 CTTCTTGATT-ATGACTCTTATGAG
1 CTTCCCG-TTAATGGCTCTCATGAG
*
81918682 CTTCCCGTTAATGGCTCTCAGGAG
1 CTTCCCGTTAATGGCTCTCATGAG
*
81918706 CTTCCTGTTA
1 CTTCCCGTTA
81918716 TATTGCTCGC
Statistics
Matches: 80, Mismatches: 19, Indels: 17
0.69 0.16 0.15
Matches are distributed among these distances:
23 2 0.03
24 51 0.64
25 24 0.30
26 3 0.04
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (24 bp):
CTTCCCGTTAATGGCTCTCATGAG
Found at i:81920936 original size:28 final size:29
Alignment explanation
Indices: 81920905--81921016 Score: 93
Period size: 29 Copynumber: 3.9 Consensus size: 29
81920895 ATACATGCAT
*
81920905 ATGGCCCACTAGGCCCAATT-TTATTCAA
1 ATGGCCCACTAGGCCCAATTCATATTCAA
* ***
81920933 ATGGCCCATCT-GGCCCAGTTCATATTTTT
1 ATGGCCCA-CTAGGCCCAATTCATATTCAA
* * * *
81920962 ATGGCCCACTAGGCCTAAATCACATTCAT
1 ATGGCCCACTAGGCCCAATTCATATTCAA
* * *
81920991 ATGGCCCATTAGGCTCAAATCATATT
1 ATGGCCCACTAGGCCCAATTCATATT
81921017 ATATTCATGC
Statistics
Matches: 66, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
28 18 0.27
29 48 0.73
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
ATGGCCCACTAGGCCCAATTCATATTCAA
Found at i:81921014 original size:58 final size:57
Alignment explanation
Indices: 81920904--81921016 Score: 129
Period size: 58 Copynumber: 2.0 Consensus size: 57
81920894 CATACATGCA
* *** **
81920904 TATGGCCCACTAGGCCCAATTTTATTCAAATGGCCCATCTGGCCCAGTTCATATTTT
1 TATGGCCCACTAGGCCAAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTTT
* *
81920961 TATGGCCCACTAGGCCTAAATCACATTCATATGGCCCAT-TAGGCTCAAATCATATT
1 TATGGCCCACTAGGCC-AAATCACATTCAAATGGCCCATCT-GGCCCAAATCATATT
81921017 ATATTCATGC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
57 17 0.37
58 29 0.63
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (57 bp):
TATGGCCCACTAGGCCAAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTTT
Found at i:81921123 original size:19 final size:19
Alignment explanation
Indices: 81921099--81921135 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
81921089 AGCCTATCAG
81921099 GCCCATTTAGCCAATTCTA
1 GCCCATTTAGCCAATTCTA
*
81921118 GCCCATTTGGCCAATTCT
1 GCCCATTTAGCCAATTCT
81921136 CAACCCAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (19 bp):
GCCCATTTAGCCAATTCTA
Found at i:81922501 original size:16 final size:16
Alignment explanation
Indices: 81922480--81922511 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81922470 GAAAAATTCA
81922480 AGATTTCGAGATTTTT
1 AGATTTCGAGATTTTT
81922496 AGATTTCGAGATTTTT
1 AGATTTCGAGATTTTT
81922512 GGGGCATTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (16 bp):
AGATTTCGAGATTTTT
Found at i:81925382 original size:29 final size:30
Alignment explanation
Indices: 81925357--81925421 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
81925347 TGACCCATCT
* * * *
81925357 GGCCCAGTTCATATTCTTATGGCCCA-CTA
1 GGCCCAATTCACATTCATATAGCCCATCTA
81925386 GGCCCAATTCACATTCATATAGCCCAT-TA
1 GGCCCAATTCACATTCATATAGCCCATCTA
81925415 GGCCCAA
1 GGCCCAA
81925422 ATAATATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (30 bp):
GGCCCAATTCACATTCATATAGCCCATCTA
Found at i:81925536 original size:19 final size:19
Alignment explanation
Indices: 81925512--81925548 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
81925502 AGCCCATCAG
81925512 GCCCATTTAGCCAATTCTA
1 GCCCATTTAGCCAATTCTA
*
81925531 GCCCATTTGGCCAATTCT
1 GCCCATTTAGCCAATTCT
81925549 CAACCCAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (19 bp):
GCCCATTTAGCCAATTCTA
Found at i:81927981 original size:152 final size:152
Alignment explanation
Indices: 81927727--81928000 Score: 386
Period size: 152 Copynumber: 1.8 Consensus size: 152
81927717 CCCATATATG
** ** * * *
81927727 TCGTCGAAATAGGGTTATAGAGCATTATTGTAAAAATGTAACTTAAAATCATCAATTTTCAAACA
1 TCGTCGAAATAGGGTTATAGAGCATTACCGTAAAAACATAAATTAAAATCATCAATATCCAAACA
* * *
81927792 TTTCATAACCATAGCAAAATCCATTCAAACACATGCATATCGTCCCTTATTCGAGCCACTAAATG
66 TTTCATAACCACAGAAAAATCCATTCAAACACATGCATATCATCCCTTATTCGAGCCACTAAATG
81927857 TAACATACCTAACCCGTATCCA
131 TAACATACCTAACCCGTATCCA
* * * * *
81927879 TCGTCGGAATAGGGTTCTAGAGTATTACCGTAAAAACATAAATTAAAATTATTAATATCCAAACA
1 TCGTCGAAATAGGGTTATAGAGCATTACCGTAAAAACATAAATTAAAATCATCAATATCCAAACA
* * *
81927944 TTTCATAATCACAGAAAAATCCATTCAAATACATGCATATCATCCTTTATTCGAGCC
66 TTTCATAACCACAGAAAAATCCATTCAAACACATGCATATCATCCCTTATTCGAGCC
81928001 CTCGAGGCAT
Statistics
Matches: 104, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
152 104 1.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (152 bp):
TCGTCGAAATAGGGTTATAGAGCATTACCGTAAAAACATAAATTAAAATCATCAATATCCAAACA
TTTCATAACCACAGAAAAATCCATTCAAACACATGCATATCATCCCTTATTCGAGCCACTAAATG
TAACATACCTAACCCGTATCCA
Found at i:81929177 original size:22 final size:20
Alignment explanation
Indices: 81929152--81929217 Score: 51
Period size: 25 Copynumber: 2.9 Consensus size: 20
81929142 AGCATACTGG
81929152 AATTCATACTTTTCATGAACAT
1 AATTCATACTTTTCAT-AA-AT
81929174 AATTATACATACTTTGATCATAAAT
1 AA-T-T-CATACTTT--TCATAAAT
*
81929199 AATTCATACCTTTCCATAA
1 AATTCATA-CTTTTCATAA
81929218 GTTCTTAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
21 5 0.14
22 6 0.16
23 6 0.16
24 2 0.05
25 12 0.32
26 2 0.05
27 4 0.11
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.39
Consensus pattern (20 bp):
AATTCATACTTTTCATAAAT
Found at i:81929200 original size:25 final size:26
Alignment explanation
Indices: 81929156--81929207 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 26
81929146 TACTGGAATT
81929156 CATACTTTTCATGAACATAATT-ATA
1 CATACTTTTCATGAACATAATTCATA
81929181 CATACTTTGATCAT-AA-ATAATTCATA
1 CATACTTT--TCATGAACATAATTCATA
81929207 C
1 C
81929208 CTTTCCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 14 0.58
26 6 0.25
27 4 0.17
ACGTcount: A:0.40, C:0.17, G:0.04, T:0.38
Consensus pattern (26 bp):
CATACTTTTCATGAACATAATTCATA
Found at i:81931135 original size:41 final size:40
Alignment explanation
Indices: 81931089--81931170 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 40
81931079 AATTATGGGA
*
81931089 TACTGAATATTGTTTTAAATACCGAATTGAACTGTGAAAAT
1 TACTGAATATTGTTATAAATACCGAATTGAACTGT-AAAAT
* ** *
81931130 TACTGAATATTGTTATGAATATTGCATTGAACTGTAAAAT
1 TACTGAATATTGTTATAAATACCGAATTGAACTGTAAAAT
81931170 T
1 T
81931171 TCAGATGAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 6 0.17
41 30 0.83
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.39
Consensus pattern (40 bp):
TACTGAATATTGTTATAAATACCGAATTGAACTGTAAAAT
Found at i:81931422 original size:39 final size:39
Alignment explanation
Indices: 81931360--81931475 Score: 110
Period size: 45 Copynumber: 2.8 Consensus size: 39
81931350 TTACTGATCA
* * * *
81931360 GACAC-TTATGTGCCGACTACTGTTACTGTTACCGATTC
1 GACACTTTGTGTGTCGAATACTGTTACTGTTACAGATTC
81931398 GACACTTTGTGTGTCGAATACTGTTACCGTTACTGTTACAGATTC
1 GACACTTTGTGTGTCGAATAC---T---GTTACTGTTACAGATTC
*
81931443 -AGCACTTTGTGTGTTGAATACTGTTACTGTTAC
1 GA-CACTTTGTGTGTCGAATACTGTTACTGTTAC
81931476 TATTACTGTT
Statistics
Matches: 65, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
38 5 0.08
39 23 0.35
42 2 0.03
44 1 0.02
45 34 0.52
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (39 bp):
GACACTTTGTGTGTCGAATACTGTTACTGTTACAGATTC
Found at i:81931449 original size:45 final size:45
Alignment explanation
Indices: 81931381--81931481 Score: 150
Period size: 45 Copynumber: 2.2 Consensus size: 45
81931371 GCCGACTACT
*
81931381 GTTACTGTTACCGATTCGACACTTTGTGTGTCGAATACTGTTACC
1 GTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGTTACC
* *
81931426 GTTACTGTTACAGATTC-AGCACTTTGTGTGTTGAATACTGTTACT
1 GTTACTGTTACAGATTCGA-CACTTTGTGTGTCGAATACTGTTACC
*
81931471 GTTACTATTAC
1 GTTACTGTTAC
81931482 TGTTACTGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 1 0.02
45 50 0.98
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (45 bp):
GTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGTTACC
Found at i:81931472 original size:6 final size:6
Alignment explanation
Indices: 81931461--81931498 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
81931451 GTGTGTTGAA
* *
81931461 TACTGT TACTGT TACTAT TACTGT TACTGC TACTGT TA
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TA
81931499 TTGATTATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (6 bp):
TACTGT
Found at i:81932239 original size:14 final size:13
Alignment explanation
Indices: 81932223--81932248 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81932213 GAAATTTATA
81932223 AAAAAAATAAAAT
1 AAAAAAATAAAAT
81932236 AAAAAAATAAAAT
1 AAAAAAATAAAAT
81932249 TCTGGAGTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAAATAAAAT
Found at i:81934702 original size:43 final size:43
Alignment explanation
Indices: 81934541--81934704 Score: 131
Period size: 43 Copynumber: 3.8 Consensus size: 43
81934531 CATAGGATTC
* *
81934541 CGATATGTGATTTCATGTAAGACCAAGTCTGGGAC-GTTGGCAT
1 CGATATGTGAGTTCATGTAAGACCACGTCTGGGACAG-TGGCAT
* * * * * ***
81934584 CGATTTGTGATTTGCGTGTAAGACAATGTCTGGGACA-TCAATAT
1 CGATATGTGAGTT-CATGTAAGACCACGTCTGGGACAGT-GGCAT
* * *
81934628 CG-TATATGAGTTCATGTAATACC-CTGCCTGGGACAGTGGCAT
1 CGATATGTGAGTTCATGTAAGACCAC-GTCTGGGACAGTGGCAT
81934670 CGATATGTGA-TTACATGTAAGACCACGTCTGGGAC
1 CGATATGTGAGTT-CATGTAAGACCACGTCTGGGAC
81934705 GTTGGTGTTG
Statistics
Matches: 92, Mismatches: 21, Indels: 16
0.71 0.16 0.12
Matches are distributed among these distances:
42 23 0.25
43 45 0.49
44 24 0.26
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
CGATATGTGAGTTCATGTAAGACCACGTCTGGGACAGTGGCAT
Found at i:81942459 original size:43 final size:42
Alignment explanation
Indices: 81942300--81942462 Score: 179
Period size: 43 Copynumber: 3.8 Consensus size: 42
81942290 CATAGGATTC
* * *
81942300 CGATATGTGATTTCGTGTAAGACCAAGTCTGGGACGTTGGCAT
1 CGATATGTGAGTTCGTGTAAGACCATGTCTGGGAAG-TGGCAT
* *
81942343 CGATTTGTGATTTGCGTGTAAGACCATGTCTGGGACA-TCGGCAT
1 CGATATGTGAGTT-CGTGTAAGACCATGTCTGGGA-AGT-GGCAT
* *
81942387 C-ATATATGAGTTCGTGTAAGACCCTGTCTGGGATAGTGGCAT
1 CGATATGTGAGTTCGTGTAAGACCATGTCTGGGA-AGTGGCAT
*
81942429 CGATATGTGA-TTACATGTAAGACCATGTCTGGGA
1 CGATATGTGAGTT-CGTGTAAGACCATGTCTGGGA
81942463 CGTTGGCGTT
Statistics
Matches: 103, Mismatches: 11, Indels: 12
0.82 0.09 0.10
Matches are distributed among these distances:
42 29 0.28
43 48 0.47
44 26 0.25
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (42 bp):
CGATATGTGAGTTCGTGTAAGACCATGTCTGGGAAGTGGCAT
Found at i:81946212 original size:20 final size:20
Alignment explanation
Indices: 81946189--81946231 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
81946179 ATATAGTTAG
81946189 GTAGTTATTAAGCTTGTTTA
1 GTAGTTATTAAGCTTGTTTA
*
81946209 GTAGTTATTAAGTTTGTTTA
1 GTAGTTATTAAGCTTGTTTA
81946229 GTA
1 GTA
81946232 AATTGTTAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.02, G:0.21, T:0.51
Consensus pattern (20 bp):
GTAGTTATTAAGCTTGTTTA
Found at i:81947033 original size:13 final size:13
Alignment explanation
Indices: 81947015--81947039 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81947005 TAAAGCTCGC
81947015 GAATTCGTAATTT
1 GAATTCGTAATTT
81947028 GAATTCGTAATT
1 GAATTCGTAATT
81947040 AGATAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
GAATTCGTAATTT
Found at i:81947592 original size:18 final size:18
Alignment explanation
Indices: 81947561--81947595 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81947551 GGCATAATTT
*
81947561 AAAATAAATTTTTTAAAG
1 AAAATAAATATTTTAAAG
*
81947579 AAAATGAATATTTTAAA
1 AAAATAAATATTTTAAA
81947596 TATGGAAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (18 bp):
AAAATAAATATTTTAAAG
Found at i:81949236 original size:4 final size:4
Alignment explanation
Indices: 81949227--81949256 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
81949217 CATCCTCATT
81949227 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
81949257 CACCTCACCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:81950586 original size:14 final size:14
Alignment explanation
Indices: 81950567--81950595 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81950557 CATCTAACTA
81950567 TGAAAAGTTACAAG
1 TGAAAAGTTACAAG
81950581 TGAAAAGTTACAAG
1 TGAAAAGTTACAAG
81950595 T
1 T
81950596 TAGATACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.24
Consensus pattern (14 bp):
TGAAAAGTTACAAG
Found at i:81960706 original size:26 final size:25
Alignment explanation
Indices: 81960677--81960728 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
81960667 AAATATATCT
81960677 TTTA-ATATGTATTACTTAAAAATTAA
1 TTTAGATATGT-TTACTT-AAAATTAA
*
81960703 TTTAGTATATGTTTAGTTAAAATTAA
1 TTTAG-ATATGTTTACTTAAAATTAA
81960729 AATAATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 12 0.52
27 5 0.22
28 6 0.26
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (25 bp):
TTTAGATATGTTTACTTAAAATTAA
Found at i:81966979 original size:14 final size:14
Alignment explanation
Indices: 81966921--81966979 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
81966911 ACCTAAACCG
*
81966921 ACCAATTCGTTCAT
1 ACCATTTCGTTCAT
*
81966935 ATCC-CTTCGTTCAT
1 A-CCATTTCGTTCAT
* *
81966949 ACCATTTCATTCCT
1 ACCATTTCGTTCAT
*
81966963 ACCATTTCGTTCGT
1 ACCATTTCGTTCAT
81966977 ACC
1 ACC
81966980 CCTCTTTCTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
13 2 0.05
14 33 0.89
15 2 0.05
ACGTcount: A:0.20, C:0.34, G:0.07, T:0.39
Consensus pattern (14 bp):
ACCATTTCGTTCAT
Found at i:81970907 original size:18 final size:18
Alignment explanation
Indices: 81970884--81970920 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
81970874 AAGCTAAAAC
81970884 AAAAA-GGAAAGAAAAGAA
1 AAAAAGGGAAAG-AAAGAA
81970902 AAAAAGGGAAAGAAAGAA
1 AAAAAGGGAAAGAAAGAA
81970920 A
1 A
81970921 GGAGAAAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (18 bp):
AAAAAGGGAAAGAAAGAA
Found at i:81970915 original size:14 final size:15
Alignment explanation
Indices: 81970896--81970929 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
81970886 AAAGGAAAGA
81970896 AAAGAAAAAAAGG-G
1 AAAGAAAAAAAGGAG
*
81970910 AAAGAAAGAAAGGAG
1 AAAGAAAAAAAGGAG
81970925 AAAGA
1 AAAGA
81970930 CAAGGCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAGGAG
Found at i:81981092 original size:24 final size:26
Alignment explanation
Indices: 81981035--81981101 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 26
81981025 AATTGTACTG
*
81981035 TCCCTTTTGCTCTCCCAACTCTCCCAA
1 TCCCTTTTGATCT-CCAACTCTCCCAA
* *
81981062 TCGCTTTTGATCTCCAA-T-TCCTAA
1 TCCCTTTTGATCTCCAACTCTCCCAA
*
81981086 TCCCTTTTGATTTCCA
1 TCCCTTTTGATCTCCA
81981102 TCATCCTTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 19 0.54
25 1 0.03
26 4 0.11
27 11 0.31
ACGTcount: A:0.16, C:0.37, G:0.06, T:0.40
Consensus pattern (26 bp):
TCCCTTTTGATCTCCAACTCTCCCAA
Done.