Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 248 of 343
Found at i:81994449 original size:39 final size:40
Alignment explanation
Indices: 81994346--81994530 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
81994336 TTGAATGATG
* * *
81994346 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
81994385 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
81994426 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
81994465 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
81994504 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
81994531 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:81994553 original size:79 final size:79
Alignment explanation
Indices: 81994401--81994563 Score: 206
Period size: 79 Copynumber: 2.1 Consensus size: 79
81994391 ACTAAGATCT
* **
81994401 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
*
81994466 CCGAGTTAAGTCCC
66 CCGAGTTAAATCCC
* *
81994480 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTA
* *
81994543 TATCCG-GTTAAATTCC
63 AATCCGAGTTAAATCCC
81994559 GAAGG
1 GAAGG
81994564 TACGTGATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.62
80 26 0.36
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGAGTTAAATCCC
Found at i:82003341 original size:21 final size:21
Alignment explanation
Indices: 82003307--82003349 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
82003297 CATGTTTGAT
82003307 TTTGGTTATCTTT-GCTTATGG
1 TTTGGTTATCTTTGGC-TATGG
82003328 TTTGAGTTAT-TTTGGCTATGG
1 TTTG-GTTATCTTTGGCTATGG
82003349 T
1 T
82003350 ATTTTATGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.12, C:0.07, G:0.26, T:0.56
Consensus pattern (21 bp):
TTTGGTTATCTTTGGCTATGG
Found at i:82006706 original size:47 final size:47
Alignment explanation
Indices: 82006606--82006725 Score: 142
Period size: 47 Copynumber: 2.6 Consensus size: 47
82006596 AAGTGTCGAT
*
82006606 GCCATGTCCCAGACATGGTCTTACACTGGCACATATTTCAAGTCAAA
1 GCCATGTCCCAGACATGGTCTTACACTGGCACATATCTCAAGTCAAA
**
82006653 GCCATGTCCCAGACATGGTCTTACACT-G-ACTATCATCTCATAG-CTGA
1 GCCATGTCCCAGACATGGTCTTACACTGGCAC-AT-ATCTCA-AGTCAAA
82006700 -CGCATGTCCCAGACAT-GTCTTACACT
1 GC-CATGTCCCAGACATGGTCTTACACT
82006726 AGCTTACGTC
Statistics
Matches: 66, Mismatches: 3, Indels: 9
0.85 0.04 0.12
Matches are distributed among these distances:
45 2 0.03
46 14 0.21
47 48 0.73
48 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCACATATCTCAAGTCAAA
Found at i:82014311 original size:47 final size:48
Alignment explanation
Indices: 82014240--82014363 Score: 141
Period size: 47 Copynumber: 2.6 Consensus size: 48
82014230 GTAAGGTGCT
* * * **
82014240 GATGCCGTGTCCCAGACATGGTCTTACACTGACTCAT-AT-TTCA-AGTA
1 GATGCCATGTCCTAGACATTGTCTTACACTGACT-ATCATCTT-ATAACA
*
82014287 GATGCCATGTCCTAGACATTGTCTTACACTGACTATCATCTTATAACC
1 GATGCCATGTCCTAGACATTGTCTTACACTGACTATCATCTTATAACA
82014335 GATG-CATGTCCTAGACA-TGTCTTACACTG
1 GATGCCATGTCCTAGACATTGTCTTACACTG
82014364 GCTTATGTTT
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
46 14 0.21
47 47 0.69
48 7 0.10
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (48 bp):
GATGCCATGTCCTAGACATTGTCTTACACTGACTATCATCTTATAACA
Found at i:82014383 original size:46 final size:46
Alignment explanation
Indices: 82014247--82014507 Score: 178
Period size: 46 Copynumber: 5.6 Consensus size: 46
82014237 GCTGATGCCG
* * * **
82014247 TGTCCCAGACATGGTCTTACACTGACTCAT-ATT-TCAAGTAGATGCCA
1 TGTCCCAGACAT-GTCTTACACTGGCTC-TCATTATGAGGCCGATG-CA
* * * *
82014294 TGTCCTAGACATTGTCTTACACTGACTATCATCTTAT-A-ACCGATGCA
1 TGTCCCAGACA-TGTCTTACACTGGCTCTCA--TTATGAGGCCGATGCA
* * *
82014341 TGTCCTAGACATGTCTTACACTGGCT-T-ATGTTTTGAGGCCGATGAA
1 TGTCCCAGACATGTCTTACACTGGCTCTCA--TTATGAGGCCGATGCA
* * * * *
82014387 TGTCCCAAACATGTCTGACACTAGCTCTCATCTCA--ATGCCGGTGCCA
1 TGTCCCAGACATGTCTTACACTGGCTCTCAT-T-ATGAGGCCGATG-CA
* *
82014434 TGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCA
1 TGTCCCAGACAT-GTCTTACACTGGCTCTCATTATGAGGCCGATGCA
*
82014481 TGTCCCAGACATGTCTTACATTGGCTC
1 TGTCCCAGACATGTCTTACACTGGCTC
82014508 ACAAACAAAT
Statistics
Matches: 173, Mismatches: 26, Indels: 31
0.75 0.11 0.13
Matches are distributed among these distances:
44 5 0.03
45 2 0.01
46 67 0.39
47 66 0.38
48 29 0.17
49 3 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (46 bp):
TGTCCCAGACATGTCTTACACTGGCTCTCATTATGAGGCCGATGCA
Found at i:82017438 original size:66 final size:66
Alignment explanation
Indices: 82017329--82017589 Score: 382
Period size: 66 Copynumber: 4.0 Consensus size: 66
82017319 TGAAATGTGA
* * *
82017329 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTATGATTGACACGAATTG
1 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTGTGATTGACAGGAACTG
82017394 T
66 T
* * * *
82017395 GAAATTGATTTGTACTATTATTTGAGCATTACTCACCTATTGTGAACTT-TGATTGATAGGAACT
1 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTG-AGTTGTGATTGACAGGAACT
82017459 GT
65 GT
* * * *
82017461 GAAATTTATTTGTACTATTGTTTGAGC-TTACTCACCTGTTGTGAGCTGTGGTTGATAGGAACTG
1 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTGTGATTGACAGGAACTG
82017525 T
66 T
* *
82017526 GAAATTGATTTGTATTATTGTTTGAGCATTACTCACCTGTTGTGAGTTGTGATTGACATGAACT
1 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTGTGATTGACAGGAACT
82017590 CTATTAGTAA
Statistics
Matches: 174, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
64 2 0.01
65 56 0.32
66 113 0.65
67 3 0.02
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.41
Consensus pattern (66 bp):
GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTGTGATTGACAGGAACTG
T
Found at i:82017581 original size:131 final size:132
Alignment explanation
Indices: 82017329--82017570 Score: 387
Period size: 131 Copynumber: 1.8 Consensus size: 132
82017319 TGAAATGTGA
* *
82017329 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTATGATTGACACGAATTG
1 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGCTATGATTGACACGAACTG
82017394 TGAAATTGATTTGTACTATTATTTGAGCATTACTCACCTATTGTGAACTTTGATTGATAGGAACT
66 TGAAATTGATTTGTACTATTATTTGAGCATTACTCACCTATTGTGAACTTTGATTGATAGGAACT
82017459 GT
131 GT
* * * * *
82017461 GAAATTTATTTGTACTATTGTTTGAGC-TTACTCACCTGTTGTGAGCTGTGGTTGATAGGAACTG
1 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGCTATGATTGACACGAACTG
* * *
82017525 TGAAATTGATTTGTATTATTGTTTGAGCATTACTCACCTGTTGTGA
66 TGAAATTGATTTGTACTATTATTTGAGCATTACTCACCTATTGTGA
82017571 GTTGTGATTG
Statistics
Matches: 100, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
131 74 0.74
132 26 0.26
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (132 bp):
GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGCTATGATTGACACGAACTG
TGAAATTGATTTGTACTATTATTTGAGCATTACTCACCTATTGTGAACTTTGATTGATAGGAACT
GT
Found at i:82019245 original size:17 final size:17
Alignment explanation
Indices: 82019223--82019262 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
82019213 ATCTTCGACT
*
82019223 AGCTTCCAACCCGATTG
1 AGCTTCCAACCCGATCG
*
82019240 AGCTTCCAACTCGATCG
1 AGCTTCCAACCCGATCG
82019257 AGCTTC
1 AGCTTC
82019263 TGATAATCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.23, C:0.35, G:0.17, T:0.25
Consensus pattern (17 bp):
AGCTTCCAACCCGATCG
Found at i:82026482 original size:16 final size:16
Alignment explanation
Indices: 82026463--82026495 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
82026453 AATTGTTTTA
82026463 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
82026479 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
82026495 T
1 T
82026496 CTCCATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:82026752 original size:50 final size:50
Alignment explanation
Indices: 82026694--82027132 Score: 475
Period size: 50 Copynumber: 8.7 Consensus size: 50
82026684 ACCGAAACTC
* * *
82026694 TCTGGTACACATAGTAGCCTGTACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * *
82026744 TCTGGTACACGTAGTAGCCTGCATTTAGGACTACACACGTGACTTATCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * *
82026794 TCTGATACACGTAGTAGCCTGCACTTAGTACTACATATGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA--CAA
* * * *
82026846 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * *
82026895 TCGGGTACACGTAGTAGCCTGCACTTAGTACTATACAAGTAACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * ** *
82026945 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCTAACAA
* ** *
82026996 TCAGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
82027046 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACAA
*** * *
82027098 TCTTAAACACATAGTAGCCTGCACATAGTACTACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACA
82027133 TGTGTTCTCA
Statistics
Matches: 321, Mismatches: 62, Indels: 10
0.82 0.16 0.03
Matches are distributed among these distances:
49 2 0.01
50 205 0.64
51 79 0.25
52 35 0.11
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:82026904 original size:101 final size:101
Alignment explanation
Indices: 82026697--82027132 Score: 484
Period size: 101 Copynumber: 4.3 Consensus size: 101
82026687 GAAACTCTCT
*
82026697 GGTACACATAGTAGCCTGTACTTAGTACTACACATGTGACCT-ATCAATCTGGTACACGTAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCAATCTGGTACACGTAGTAG
* * * * *
82026761 CCTGCATTTAGGACTACACACGTGACTTATCCATCT
66 CCTGCACTTAGTACTACACACGTGACCTATCAATCA
* * * * * * * * *
82026797 GATACACGTAGTAGCCTGCACTTAGTACTACATATGTGATCGAAGTTAA-CGGGTACGCATAGTA
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-TCAATCTGGTACACGTAGTA
* *
82026861 GCCTGCACTTAGTACTACACATGTGACCTATCAATCG
65 GCCTGCACTTAGTACTACACACGTGACCTATCAATCA
* * * * * *
82026898 GGTACACGTAGTAGCCTGCACTTAGTACTATACAAGTAACCTAA-CCATCTGATACACGTAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCAATCTGGTACACGTAGTAG
** * *
82026962 CCTGCACTTAGTACTACACACGTGATCGAAACTATCA
66 CCTGCACTTAGTACTACACACGTGA-CCTATCAATCA
**
82026999 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATCTGGTACACGTAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCAATCTGGTACACGTAGTAG
* * *
82027063 CCTGCACTTAGTACTACACACGTGACCTAAAACTATCT
66 CCTGCACTTAGTACTACACACGTGACCT--ATCAATCA
*** *
82027101 TAAACACATAGTAGCCTGCACATAGTACTACA
1 GGTACACATAGTAGCCTGCACTTAGTACTACA
82027133 TGTGTTCTCA
Statistics
Matches: 278, Mismatches: 52, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
99 1 0.00
100 73 0.26
101 168 0.60
102 36 0.13
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (101 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCAATCTGGTACACGTAGTAG
CCTGCACTTAGTACTACACACGTGACCTATCAATCA
Found at i:82026971 original size:151 final size:151
Alignment explanation
Indices: 82026697--82027133 Score: 649
Period size: 151 Copynumber: 2.9 Consensus size: 151
82026687 GAAACTCTCT
* *
82026697 GGTACACATAGTAGCCTGTACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* * * *
82026762 CTGCATTTAGGACTACACACGTGACTTATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
* ** *
82026827 CATATGTGATCGAAGTTAACG
131 CATACGTGATCGAAACTAACA
*
82026848 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCGGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* * *
82026913 CTGCACTTAGTACTATACAAGTAACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
* *
82026978 CACACGTGATCGAAACTATCA
131 CATACGTGATCGAAACTAACA
* *
82026999 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* * * * *
82027064 CTGCACTTAGTACTACACACGTGACCTAAAACTATCTTAAACACATAGTAGCCTGCACATAGTAC
66 CTGCACTTAGTACTACACACGTGACCT--AACCATCTGATACACGTAGTAGCCTGCACTTAGTAC
82027129 TACAT
129 TACAT
82027134 GTGTTCTCAC
Statistics
Matches: 256, Mismatches: 28, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
151 221 0.86
153 35 0.14
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
CATACGTGATCGAAACTAACA
Found at i:82030182 original size:9 final size:9
Alignment explanation
Indices: 82030168--82030196 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
82030158 ACATGTCATT
82030168 TATATCCTA
1 TATATCCTA
82030177 TATATCCTA
1 TATATCCTA
82030186 TATATCCTA
1 TATATCCTA
82030195 TA
1 TA
82030197 AATTTCATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (9 bp):
TATATCCTA
Found at i:82032283 original size:48 final size:48
Alignment explanation
Indices: 82032106--82032370 Score: 169
Period size: 47 Copynumber: 5.6 Consensus size: 48
82032096 GATATATTGT
* * * * * * *
82032106 CGATGCCATGTCCTAGACATGGTCTTACATTGGCTCTCATATATGCGTGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGACTATCATCTGTGAG-GC
* * *
82032156 TGATGCATGTCTCAGACAT-GTCTTACACTAGCAC-AAC-TCT-T-A-GC
1 CGATGCATGTCCCAGACATGGTCTTACACT-G-ACTATCATCTGTGAGGC
* * * *
82032200 CGATGCGTGTCCTAGACA-CGTCTTACACTGGCTATC-TCTGTCGAGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTGT-GAGGC
* *
82032247 CGATGCATGTCCCATACATGGTCTTACACTGACTATCAT-AGT-ATGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTGTGA-GGC
* ** * *
82032294 TGATGCATGTCCCAGACAT-GTCTTACACT-AGCCCTCGTCTG-GATGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGA-CTATCATCTGTGAGGC
*
82032340 CGATGCCATGCCCCAGACATGGTCTTACACT
1 CGATG-CATGTCCCAGACATGGTCTTACACT
82032371 TGCTCTCATA
Statistics
Matches: 169, Mismatches: 30, Indels: 34
0.73 0.13 0.15
Matches are distributed among these distances:
42 1 0.01
43 6 0.04
44 27 0.16
45 1 0.01
46 22 0.13
47 53 0.31
48 39 0.23
49 15 0.09
50 5 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTGTGAGGC
Found at i:82032318 original size:94 final size:94
Alignment explanation
Indices: 82032201--82032420 Score: 257
Period size: 94 Copynumber: 2.3 Consensus size: 94
82032191 ACTCTTAGCC
* * * *
82032201 GATGCGTGTCCTAGACACGTCTTACACTGGCTATC-TCTGTCGAGGCCGATG-CATGTCCCATAC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTATCGTCTG--GAGGCCGATGCCATGCCCCAGAC
*
82032264 ATGGTCTTACAC-TGACTATCATAGTATGGCT
64 ATGGTCTTACACTTG-CTATCATAATATGGCT
* * ** *
82032295 GATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGATGCCGATGCCATGCCCCAGACAT
1 GATGCATGTCCCAGACACGTCTTACACTGGCTATCGTCTGGAGGCCGATGCCATGCCCCAGACAT
* *
82032360 GGTCTTACACTTGCTCTCATAATGTGGCT
66 GGTCTTACACTTGCTATCATAATATGGCT
* * *
82032389 GAAGTATGTCCCAGACACGTCTTGCACTGGCT
1 GATGCATGTCCCAGACACGTCTTACACTGGCT
82032421 CACAAATCAC
Statistics
Matches: 105, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
93 9 0.09
94 90 0.86
95 6 0.06
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (94 bp):
GATGCATGTCCCAGACACGTCTTACACTGGCTATCGTCTGGAGGCCGATGCCATGCCCCAGACAT
GGTCTTACACTTGCTATCATAATATGGCT
Found at i:82032402 original size:47 final size:47
Alignment explanation
Indices: 82032107--82032405 Score: 154
Period size: 47 Copynumber: 6.4 Consensus size: 47
82032097 ATATATTGTC
* *
82032107 GATGCCATGTCCTAGACATGGTCTTACA-TTGGCTCTCATATATGCGTGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTT-GCTCTCATA-ATGTG-GCT
* * * * * * *
82032157 GATGCATGTCTCAGACAT-GTCTTACACTAG--CACA-ACTCTTAGCC
1 GATGCATGTCCCAGACATGGTCTTACACTTGCTCTCATAAT-GTGGCT
* * * * * * *
82032201 GATGCGTGTCCTAGACA-CGTCTTACACTGGCTATCTC-T-GTCGAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTTGC--TCTCATAAT-GTGGCT
* * * *
82032248 GATGCATGTCCCATACATGGTCTTACAC-TGACTATCATAGTATGGCT
1 GATGCATGTCCCAGACATGGTCTTACACTTG-CTCTCATAATGTGGCT
* * * * *
82032295 GATGCATGTCCCAGACAT-GTCTTACACTAGCCCTCGT-CTG-GATGCC
1 GATGCATGTCCCAGACATGGTCTTACACTTGCTCTCATAATGTG--GCT
*
82032341 GATGCCATGCCCCAGACATGGTCTTACACTTGCTCTCATAATGTGGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTTGCTCTCATAATGTGGCT
* *
82032389 GAAGTATGTCCCAGACA
1 GATGCATGTCCCAGACA
82032406 CGTCTTGCAC
Statistics
Matches: 186, Mismatches: 44, Indels: 41
0.69 0.16 0.15
Matches are distributed among these distances:
44 29 0.16
45 2 0.01
46 25 0.13
47 66 0.35
48 44 0.24
49 15 0.08
50 5 0.03
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTTGCTCTCATAATGTGGCT
Found at i:82035488 original size:39 final size:39
Alignment explanation
Indices: 82035425--82035580 Score: 267
Period size: 39 Copynumber: 4.0 Consensus size: 39
82035415 ATTACCAGCA
* * *
82035425 CCAGCACGAAGCCTGGGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
82035464 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
82035503 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
82035542 CTAGCACGAAGCCTGCGGGACTTTAGACCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
82035581 TCAGTGTCTT
Statistics
Matches: 112, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:82037852 original size:19 final size:20
Alignment explanation
Indices: 82037820--82037857 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
82037810 AAACTCAGGG
* *
82037820 AAATTTTGAGAAAACATAGA
1 AAATTTTCAGAAAAAATAGA
82037840 AAATTTTCA-AAAAAATAG
1 AAATTTTCAGAAAAAATAG
82037858 GGGACACACG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.58, C:0.05, G:0.11, T:0.26
Consensus pattern (20 bp):
AAATTTTCAGAAAAAATAGA
Found at i:82040685 original size:18 final size:18
Alignment explanation
Indices: 82040653--82040701 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
82040643 TTTAAAACTT
*
82040653 AAATTTTGA-AAACTTAA
1 AAATTTGGAGAAACTTAA
82040670 AAATTTGGAGAAACTTAA
1 AAATTTGGAGAAACTTAA
82040688 AAATTTGGAGAAAC
1 AAATTTGGAGAAAC
82040702 GAGTTTGGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 8 0.27
18 22 0.73
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (18 bp):
AAATTTGGAGAAACTTAA
Found at i:82040940 original size:23 final size:23
Alignment explanation
Indices: 82040906--82040961 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
82040896 TTCATGTGCC
*
82040906 AGAGAAT-CTTACTGTTCT-TGCA
1 AGAGAATATTTACTGTT-TATGCA
* *
82040928 AGGGAATATTTACTGTTTATGCC
1 AGAGAATATTTACTGTTTATGCA
82040951 AGAGAATATTT
1 AGAGAATATTT
82040962 CCTATTCACT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 7 0.25
23 21 0.75
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (23 bp):
AGAGAATATTTACTGTTTATGCA
Found at i:82045066 original size:26 final size:26
Alignment explanation
Indices: 82045030--82045082 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
82045020 TCACCATATG
82045030 TAAGTTTTTCATATGAAATAATACCT
1 TAAGTTTTTCATATGAAATAATACCT
82045056 TAAGTTTTTCATATGAAATAATACCT
1 TAAGTTTTTCATATGAAATAATACCT
82045082 T
1 T
82045083 TGTAATTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (26 bp):
TAAGTTTTTCATATGAAATAATACCT
Found at i:82049612 original size:19 final size:22
Alignment explanation
Indices: 82049585--82049626 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
82049575 ATGAGAAGTT
82049585 AAAGAATGAAG-AAT-GGGATA
1 AAAGAATGAAGAAATAGGGATA
*
82049605 AAAG-ATGATGAAATAGGGATA
1 AAAGAATGAAGAAATAGGGATA
82049626 A
1 A
82049627 GTGAAATGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 5 0.26
20 7 0.37
21 7 0.37
ACGTcount: A:0.55, C:0.00, G:0.29, T:0.17
Consensus pattern (22 bp):
AAAGAATGAAGAAATAGGGATA
Found at i:82053818 original size:47 final size:47
Alignment explanation
Indices: 82053764--82053859 Score: 156
Period size: 47 Copynumber: 2.0 Consensus size: 47
82053754 TTGTTTGGAT
* *
82053764 TGACATAGAAATATGTTTAAGAGATTAATTGATTTAGTATGTATGTA
1 TGACATAGAAATATGTTTAAAAGATTAATTGATTTAGTAAGTATGTA
* *
82053811 TGACATAGATATATGTTTAAAAGGTTAATTGATTTAGTAAGTATGTA
1 TGACATAGAAATATGTTTAAAAGATTAATTGATTTAGTAAGTATGTA
82053858 TG
1 TG
82053860 TGCATTAACA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.38, C:0.02, G:0.20, T:0.41
Consensus pattern (47 bp):
TGACATAGAAATATGTTTAAAAGATTAATTGATTTAGTAAGTATGTA
Found at i:82062864 original size:37 final size:37
Alignment explanation
Indices: 82062771--82062864 Score: 91
Period size: 37 Copynumber: 2.5 Consensus size: 37
82062761 ACTAAACTCT
* * * * * *
82062771 AAAACTATAATATTTAAATTTCAATGACTAAATTGTAT
1 AAAACTGTAAAATTTAAA-TTCAAGGACTAAAATATAA
* *
82062809 AAAA-TGTAAGATTCTAAATTCAGGGACTAAAATATAA
1 AAAACTGTAAAATT-TAAATTCAAGGACTAAAATATAA
82062846 AAAACTGTAAAATTTAAAT
1 AAAACTGTAAAATTTAAAT
82062865 ATTAGGGATT
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
37 30 0.65
38 16 0.35
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (37 bp):
AAAACTGTAAAATTTAAATTCAAGGACTAAAATATAA
Found at i:82076317 original size:30 final size:30
Alignment explanation
Indices: 82076271--82076394 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
82076261 TTTTATTATG
*
82076271 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
82076302 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
82076332 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
82076362 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
82076392 CCA
1 CCA
82076395 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:82076326 original size:15 final size:15
Alignment explanation
Indices: 82076281--82076388 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
82076271 CCAATATCTC
82076281 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
82076296 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
82076311 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
82076326 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
82076341 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
82076356 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
82076371 GATACCCATATCTTT
1 GATACCCATATCTTT
82076386 GAT
1 GAT
82076389 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:82080992 original size:30 final size:30
Alignment explanation
Indices: 82080946--82081039 Score: 143
Period size: 30 Copynumber: 3.1 Consensus size: 30
82080936 TTTTATTATG
*
82080946 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
82080977 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
82081007 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
82081037 CCA
1 CCA
82081040 TAAATATGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
30 51 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:82081001 original size:15 final size:15
Alignment explanation
Indices: 82080956--82081033 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
82080946 CCAATATCTC
82080956 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
82080971 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
82080986 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
82081001 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
82081016 GATACCCATATCTTT
1 GATACCCATATCTTT
82081031 GAT
1 GAT
82081034 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:82088652 original size:53 final size:53
Alignment explanation
Indices: 82088567--82088674 Score: 198
Period size: 53 Copynumber: 2.0 Consensus size: 53
82088557 TCCTCCCCAG
82088567 ACCAATATTACGTATACGAACTTTCTTGGTAACTTTGTCCTCCAATGAAGTCA
1 ACCAATATTACGTATACGAACTTTCTTGGTAACTTTGTCCTCCAATGAAGTCA
* *
82088620 ACCATTATTATGTATACGAACTTTCTTGGTAACTTTGTCCTCCAATGAAGTCA
1 ACCAATATTACGTATACGAACTTTCTTGGTAACTTTGTCCTCCAATGAAGTCA
82088673 AC
1 AC
82088675 GATGCAGAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (53 bp):
ACCAATATTACGTATACGAACTTTCTTGGTAACTTTGTCCTCCAATGAAGTCA
Found at i:82097874 original size:48 final size:47
Alignment explanation
Indices: 82097798--82097966 Score: 166
Period size: 48 Copynumber: 3.6 Consensus size: 47
82097788 AAGCTGACGC
*
82097798 CATGTCCCAGACAGGTCTTACACCAGCTTGTATATCGCGAGGCTGATG
1 CATGTCCCAGACAGGTCTTACACTAGCTT-TATATCGCGAGGCTGATG
* * * * ** *
82097846 CATGTCCCAGATATGTCTCACACTAGCTTAAATATCTAGAGGCCGATG
1 CATGTCCCAGACAGGTCTTACACTAGCTT-TATATCGCGAGGCTGATG
*
82097894 CATGTCCCAGAC-GTGTCTTACACTAGCTTT-CAT-GCTGTA-GCTGATG
1 CATGTCCCAGACAG-GTCTTACACTAGCTTTATATCGC-G-AGGCTGATG
* *
82097940 CATGTCCTAGATAGGTCTTACACTAGC
1 CATGTCCCAGACAGGTCTTACACTAGC
82097967 ATACATATCA
Statistics
Matches: 98, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
46 32 0.33
47 2 0.02
48 64 0.65
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACAGGTCTTACACTAGCTTTATATCGCGAGGCTGATG
Found at i:82098334 original size:30 final size:30
Alignment explanation
Indices: 82098298--82098381 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
82098288 ATAATTGGGA
*
82098298 AAAATGACCATTTTTCCCTTAGACTTTCAC
1 AAAATGACCATTTTACCCTTAGACTTTCAC
82098328 AAAATGACCATTTTACCCTTAGACTTTCAC
1 AAAATGACCATTTTACCCTTAGACTTTCAC
* *
82098358 AAAATAACCATTTTACCCCTAGAC
1 AAAATGACCATTTTACCCTTAGAC
82098382 GTGAAAATTG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.32
Consensus pattern (30 bp):
AAAATGACCATTTTACCCTTAGACTTTCAC
Found at i:82102621 original size:17 final size:18
Alignment explanation
Indices: 82102599--82102632 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82102589 AGTTGAATTG
82102599 AAATTGCG-AAATTAAAT
1 AAATTGCGAAAATTAAAT
*
82102616 AAATTGTGAAAATTAAA
1 AAATTGCGAAAATTAAA
82102633 ATGGAGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.03, G:0.12, T:0.29
Consensus pattern (18 bp):
AAATTGCGAAAATTAAAT
Found at i:82103370 original size:10 final size:10
Alignment explanation
Indices: 82103351--82103400 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
82103341 TTAAATACTA
82103351 AAAGATAAAT
1 AAAGATAAAT
82103361 ACAA-ATAAAT
1 A-AAGATAAAT
*
82103371 AAAGATAATT
1 AAAGATAAAT
82103381 AAAGATAAAT
1 AAAGATAAAT
82103391 GAAA-ATAAAT
1 -AAAGATAAAT
82103401 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:82105134 original size:17 final size:16
Alignment explanation
Indices: 82105108--82105159 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
82105098 TTAATATCTG
82105108 AAAAT-AATAAATAAA
1 AAAATAAATAAATAAA
*
82105123 ATAATAAGATAAAATAAA
1 AAAATAA-AT-AAATAAA
*
82105141 TAAAATAAAAAAATAAA
1 -AAAATAAATAAATAAA
82105158 AA
1 AA
82105160 TAAAAATTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
15 4 0.13
16 3 0.10
17 9 0.30
18 8 0.27
19 6 0.20
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (16 bp):
AAAATAAATAAATAAA
Found at i:82105138 original size:22 final size:23
Alignment explanation
Indices: 82105113--82105163 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 23
82105103 ATCTGAAAAT
* *
82105113 AATAAATAAAATAATAAGAT-AA
1 AATAAATAAAATAAAAAAATAAA
82105135 AATAAATAAAATAAAAAAATAAA
1 AATAAATAAAATAAAAAAATAAA
82105158 AATAAA
1 AATAAA
82105164 AATTGGGTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 18 0.69
23 8 0.31
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (23 bp):
AATAAATAAAATAAAAAAATAAA
Found at i:82105157 original size:8 final size:8
Alignment explanation
Indices: 82105116--82105159 Score: 52
Period size: 8 Copynumber: 5.1 Consensus size: 8
82105106 TGAAAATAAT
82105116 AAATAAAA
1 AAATAAAA
*
82105124 TAATAAGATA
1 AAATAA-A-A
82105134 AAATAAATA
1 AAATAAA-A
82105143 AAATAAAA
1 AAATAAAA
82105151 AAATAAAA
1 AAATAAAA
82105159 A
1 A
82105160 TAAAAATTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
8 15 0.47
9 11 0.34
10 6 0.19
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (8 bp):
AAATAAAA
Found at i:82111571 original size:10 final size:10
Alignment explanation
Indices: 82111552--82111611 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
82111542 TTAAATACTA
82111552 AAAGATAAAT
1 AAAGATAAAT
82111562 ACAA-ATAAAT
1 A-AAGATAAAT
*
82111572 AAAGATAATT
1 AAAGATAAAT
82111582 AAAGATAAAT
1 AAAGATAAAT
82111592 AAAGATAAAT
1 AAAGATAAAT
82111602 GAAA-ATAAAT
1 -AAAGATAAAT
82111612 CCTAAAATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:82117118 original size:26 final size:26
Alignment explanation
Indices: 82117087--82117194 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82117077 TGAAATTCCC
*
82117087 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
82117113 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
82117139 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
82117165 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82117191 ATCA
1 ATCA
82117195 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82119143 original size:344 final size:343
Alignment explanation
Indices: 82118501--82119190 Score: 1308
Period size: 344 Copynumber: 2.0 Consensus size: 343
82118491 GGATGATAAA
*
82118501 AGAATAAATAAATGAAATTAGTGCTTTGTGTCTTCTCCTCCAAGGACAAAACAAGAAAAAGAAAG
1 AGAATAAATAAATGAAATTAGTGCTTTGTGTCTTCTCCTCCAACGACAAAACAAGAAAAAGAAAG
82118566 AAAGAAAGCTTGCATGTGTTGTTCACCATTTTCGTGAGCTTGTTATAAGAATTATTAAGCTTTCT
66 AAAGAAAGCTTGCATGTGTTGTTCACCATTTTCGTGAGCTTGTTATAAGAATTATTAAGCTTTCT
82118631 TGTTCAATTTTTGTTAAAATTCAATTTATCATAGTAGATGAATATAACCCAATTCTTAAAAGTTG
131 TGTTCAATTTTTGTTAAAATTCAATTTATCATAGTAGATGAATATAACCCAATTCTTAAAAGTTG
82118696 AAATTACTAAGGTGTTGCTAAGTAATTTATTGATGGTTGTTATGAATTTAGAGAGAGAAATGTTG
196 AAATTACTAAGGTGTTGCTAAGTAATTTATTGATGGTTGTTATGAATTTAGAGAGAGAAATGTTG
*
82118761 AAAACTTTAGAGAAAAAATTTATGTTTATTGATAGTTTGAGGTCCCTAAAGTATAATTATAAAAT
261 AAAACTTTAGAGAAAAAATTTATGTTTATTGATAGTTTGAGGTCCCTAAAGTATAACTATAAAAT
* *
82118826 TATATTTATATTCGAATG
326 CATATTTATATTCGAAAG
82118844 AGAATAAATAAATGAAATTAGTGCTTTGTGTCTTCTCCTCCAACGACAAAACAAGAAAAAGAAAG
1 AGAATAAATAAATGAAATTAGTGCTTTGTGTCTTCTCCTCCAACGACAAAACAAGAAAAAGAAAG
82118909 AAAGAAAGCTTGCATGTGTTGTTCACCATTTTCGTGAGCTTGTTATAAGAATTATTAAGCTTTCT
66 AAAGAAAGCTTGCATGTGTTGTTCACCATTTTCGTGAGCTTGTTATAAGAATTATTAAGCTTTCT
* *
82118974 TGTTTAATTTTTGTTAAAATTTCAATTTATCATGGTAGATGAATATAACCCAATTCTTAAAAGTT
131 TGTTCAATTTTTGTTAAAA-TTCAATTTATCATAGTAGATGAATATAACCCAATTCTTAAAAGTT
82119039 GAAATTACTAAGGTGTTGCTAAGTAATTTATTGATGGTTGTTATGAATTTAGAGAGAGAAATGTT
195 GAAATTACTAAGGTGTTGCTAAGTAATTTATTGATGGTTGTTATGAATTTAGAGAGAGAAATGTT
*
82119104 GAAAACTTTAGAGAAAAAATTTATGTTTATTGATAGTTTGAGGTCCCTAGAGTATAACTATAAAA
260 GAAAACTTTAGAGAAAAAATTTATGTTTATTGATAGTTTGAGGTCCCTAAAGTATAACTATAAAA
82119169 TCATATTTATATTCGAAAG
325 TCATATTTATATTCGAAAG
82119188 AGA
1 AGA
82119191 GAGTTGTGAG
Statistics
Matches: 339, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
343 147 0.43
344 192 0.57
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (343 bp):
AGAATAAATAAATGAAATTAGTGCTTTGTGTCTTCTCCTCCAACGACAAAACAAGAAAAAGAAAG
AAAGAAAGCTTGCATGTGTTGTTCACCATTTTCGTGAGCTTGTTATAAGAATTATTAAGCTTTCT
TGTTCAATTTTTGTTAAAATTCAATTTATCATAGTAGATGAATATAACCCAATTCTTAAAAGTTG
AAATTACTAAGGTGTTGCTAAGTAATTTATTGATGGTTGTTATGAATTTAGAGAGAGAAATGTTG
AAAACTTTAGAGAAAAAATTTATGTTTATTGATAGTTTGAGGTCCCTAAAGTATAACTATAAAAT
CATATTTATATTCGAAAG
Found at i:82124878 original size:16 final size:16
Alignment explanation
Indices: 82124867--82124905 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
82124857 TAGAATAGGA
82124867 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
* *
82124883 CTGTAATGTAATAAAG
1 CTGTAATGGAATAGAG
*
82124899 TTGTAAT
1 CTGTAAT
82124906 CAATAATTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.33
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:82125178 original size:8 final size:10
Alignment explanation
Indices: 82125154--82125182 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
82125144 TTTTTTATTT
82125154 TTATATTAAA
1 TTATATTAAA
82125164 TTATATTAAA
1 TTATATTAAA
82125174 TTAT-TTAAA
1 TTATATTAAA
82125183 ATATTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.26
10 14 0.74
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TTATATTAAA
Found at i:82134895 original size:50 final size:49
Alignment explanation
Indices: 82134819--82134963 Score: 175
Period size: 50 Copynumber: 3.0 Consensus size: 49
82134809 TATGGCGTTG
* *
82134819 ATATGGGATCCCATGTAAGACTATGTCTGAGACATGGCATTGGCATCAA
1 ATATGAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCAA
* *
82134868 CATATGAGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAA
1 -ATATGAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCAA
* * * * * * *
82134918 GT-GGTGATCCCATGTAAGACCATATCTGAGATATAGCGTTGGCATC
1 ATATGAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATC
82134964 TTATTATGTG
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 36 0.44
49 1 0.01
50 45 0.55
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (49 bp):
ATATGAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCAA
Found at i:82139724 original size:43 final size:43
Alignment explanation
Indices: 82139621--82139728 Score: 164
Period size: 43 Copynumber: 2.5 Consensus size: 43
82139611 TAGCCCAGCT
*
82139621 ATGGTCTTACACGA-AATCAAATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACAC-ATAATCACATAACGATGCCAATGTCCCAGAC
** *
82139664 ATGGTCTTACATGTAATCACATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
82139707 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACATAATCACAT
82139729 CCCGTTAATC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
Found at i:82170744 original size:28 final size:29
Alignment explanation
Indices: 82170692--82170746 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
82170682 AGATTTTTAA
82170692 AAAAATTAAGAAAATAGGCTAAATTTTTT
1 AAAAATTAAGAAAATAGGCTAAATTTTTT
* * *
82170721 AAAATTTATGAAAATGGGCT-AATTTT
1 AAAAATTAAGAAAATAGGCTAAATTTT
82170747 AGTAAAACGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 6 0.26
29 17 0.74
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (29 bp):
AAAAATTAAGAAAATAGGCTAAATTTTTT
Found at i:82170752 original size:29 final size:29
Alignment explanation
Indices: 82170692--82170753 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
82170682 AGATTTTTAA
*
82170692 AAAAATTAAGAAAATAGGCTAAATTTTTT
1 AAAAATTAAGAAAATAGGCTAAATTTTGT
* * *
82170721 AAAATTTATGAAAATGGGCT-AATTTTAGT
1 AAAAATTAAGAAAATAGGCTAAATTTT-GT
82170750 AAAA
1 AAAA
82170754 CGCTTTCCGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.50, C:0.03, G:0.13, T:0.34
Consensus pattern (29 bp):
AAAAATTAAGAAAATAGGCTAAATTTTGT
Found at i:82177374 original size:13 final size:13
Alignment explanation
Indices: 82177356--82177382 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82177346 CGCAGTGCCT
82177356 ATAAACTATTACA
1 ATAAACTATTACA
82177369 ATAAACTATTACA
1 ATAAACTATTACA
82177382 A
1 A
82177383 GGTTTGGAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAAACTATTACA
Found at i:82178730 original size:35 final size:38
Alignment explanation
Indices: 82178691--82178765 Score: 93
Period size: 38 Copynumber: 2.1 Consensus size: 38
82178681 ATAATAAAAA
* *
82178691 TAATATAT-GTAGAAA-AT-TTTAATATTATAATTTAT
1 TAATATATAGTAGAAATATATTTAATAGTATAATATAT
* *
82178726 TAATATATATTATAAATATATTTAATAGTATAATATAT
1 TAATATATAGTAGAAATATATTTAATAGTATAATATAT
82178764 TA
1 TA
82178766 TTTATAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
35 8 0.24
36 5 0.15
37 2 0.06
38 18 0.55
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (38 bp):
TAATATATAGTAGAAATATATTTAATAGTATAATATAT
Found at i:82178769 original size:20 final size:20
Alignment explanation
Indices: 82178708--82178769 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
82178698 TGTAGAAAAT
*
82178708 TTTAATATTATAATTTATTA
1 TTTAATATTATAATATATTA
*
82178728 -ATATATATTATAA-ATA-TA
1 TTTA-ATATTATAATATATTA
*
82178746 TTTAATAGTATAATATATTA
1 TTTAATATTATAATATATTA
82178766 TTTA
1 TTTA
82178770 TAAAAATATG
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 10 0.29
19 9 0.26
20 15 0.44
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
TTTAATATTATAATATATTA
Found at i:82187661 original size:24 final size:25
Alignment explanation
Indices: 82187612--82187661 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
82187602 ACCCTTCTCA
* *
82187612 TCTCTTCACTTCTCTCTCATTTTTC
1 TCTCTTCACTTCCCTCTCATTGTTC
82187637 TCTCTTCA-TTCCCT-TCCATTGTTC
1 TCTCTTCACTTCCCTCT-CATTGTTC
82187661 T
1 T
82187662 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 1 0.05
24 13 0.59
25 8 0.36
ACGTcount: A:0.08, C:0.36, G:0.02, T:0.54
Consensus pattern (25 bp):
TCTCTTCACTTCCCTCTCATTGTTC
Found at i:82191367 original size:15 final size:15
Alignment explanation
Indices: 82191347--82191376 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82191337 ATCAGACCCT
82191347 CCAAATGATAAAGAG
1 CCAAATGATAAAGAG
*
82191362 CCAAATGATGAAGAG
1 CCAAATGATAAAGAG
82191377 GAAGATGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.23, T:0.13
Consensus pattern (15 bp):
CCAAATGATAAAGAG
Found at i:82195494 original size:25 final size:24
Alignment explanation
Indices: 82195455--82195511 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
82195445 TTTTCTCCTA
* *
82195455 AATTTTTATTTTATTTAATTATTT
1 AATTTTTAATTTATTGAATTATTT
82195479 AATTTTCTAATTTATTGAATTA-TT
1 AATTTT-TAATTTATTGAATTATTT
82195503 AATATTTTA
1 AAT-TTTTA
82195512 TACTAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 13 0.45
25 16 0.55
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (24 bp):
AATTTTTAATTTATTGAATTATTT
Found at i:82205220 original size:35 final size:35
Alignment explanation
Indices: 82205181--82205250 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
82205171 ATAAACGTAT
**
82205181 TTAAATTGTGTTATAAATGCTTATTTATTATTGAA
1 TTAAATTGAATTATAAATGCTTATTTATTATTGAA
* * * *
82205216 TTAAATTGAATTCTATATGTTTATTTGTTATTGAA
1 TTAAATTGAATTATAAATGCTTATTTATTATTGAA
82205251 CTGTTATGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.33, C:0.03, G:0.11, T:0.53
Consensus pattern (35 bp):
TTAAATTGAATTATAAATGCTTATTTATTATTGAA
Found at i:82205434 original size:43 final size:43
Alignment explanation
Indices: 82205386--82205497 Score: 163
Period size: 43 Copynumber: 2.6 Consensus size: 43
82205376 AGATTACATA
* * *
82205386 TAAGACCATGTCTGGGACATTGTCATTGTAT-TGTGATTGCGTG
1 TAAGACTATGTCTGGGACATTGGCATTGT-TGTATGATTGCGTG
*
82205429 TAAGACTATGTCTGGGACATTGGCATTGTTGTATGATTTCGTG
1 TAAGACTATGTCTGGGACATTGGCATTGTTGTATGATTGCGTG
*
82205472 TAAGACTATGTCTAGGACATTGGCAT
1 TAAGACTATGTCTGGGACATTGGCAT
82205498 CGATATGAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 1 0.02
43 62 0.98
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (43 bp):
TAAGACTATGTCTGGGACATTGGCATTGTTGTATGATTGCGTG
Found at i:82205517 original size:43 final size:42
Alignment explanation
Indices: 82205373--82205547 Score: 158
Period size: 43 Copynumber: 4.1 Consensus size: 42
82205363 GATTGCTGAG
* * *
82205373 ATGAGATTACATATAAGACCATGTCTGGGACATTGTCATTGT
1 ATGAGATTACATGTAAGACTATGTCTGGGACATTGGCATTGT
* * *
82205415 ATTGTGATTGCGTGTAAGACTATGTCTGGGACATTGGCATTGT
1 A-TGAGATTACATGTAAGACTATGTCTGGGACATTGGCATTGT
* * * *
82205458 -TGTATGATTTCGTGTAAGACTATGTCTAGGACATTGGCATCGAT
1 ATG-A-GATTACATGTAAGACTATGTCTGGGACATTGGCATTG-T
* * * *
82205502 ATGAGATAACATGTAAGA-TCATATCTGGGATA-CGGCATTGT
1 ATGAGATTACATGTAAGACT-ATGTCTGGGACATTGGCATTGT
82205543 ATGAG
1 ATGAG
82205548 CTTTATGTGA
Statistics
Matches: 109, Mismatches: 18, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
41 8 0.07
42 8 0.07
43 89 0.82
44 2 0.02
45 2 0.02
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.34
Consensus pattern (42 bp):
ATGAGATTACATGTAAGACTATGTCTGGGACATTGGCATTGT
Found at i:82214957 original size:18 final size:18
Alignment explanation
Indices: 82214936--82214970 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82214926 GGTCATTCAT
82214936 TTTATCTTTTTAATTTTC
1 TTTATCTTTTTAATTTTC
* *
82214954 TTTATTTTTTTCATTTT
1 TTTATCTTTTTAATTTT
82214971 TAAGAATCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTATCTTTTTAATTTTC
Found at i:82215315 original size:24 final size:21
Alignment explanation
Indices: 82215265--82215315 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 21
82215255 AAAACCAATG
*
82215265 TTTTATAGGAAATTATTTTGT
1 TTTTATAGGAAATTATTTTAT
82215286 TATTTATAGGAAATTACATTTTAT
1 T-TTTATAGGAAATT--ATTTTAT
82215310 CTTTTA
1 -TTTTA
82215316 ATTTCCTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.04
22 13 0.52
24 10 0.40
25 1 0.04
ACGTcount: A:0.31, C:0.04, G:0.10, T:0.55
Consensus pattern (21 bp):
TTTTATAGGAAATTATTTTAT
Found at i:82215461 original size:25 final size:25
Alignment explanation
Indices: 82215427--82215476 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
82215417 GAGTTTTTAC
82215427 ATGGAATTAAGTTACCAGTGAAAAG
1 ATGGAATTAAGTTACCAGTGAAAAG
**
82215452 ATGGAATTAAGTTATTAGTGAAAAG
1 ATGGAATTAAGTTACCAGTGAAAAG
82215477 CTTGGGTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.24, T:0.28
Consensus pattern (25 bp):
ATGGAATTAAGTTACCAGTGAAAAG
Found at i:82222575 original size:39 final size:39
Alignment explanation
Indices: 82222521--82222596 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
82222511 ATGATTGCCT
*
82222521 TGTTCTCACAGTACAACTTGATAGGCATGGTTATAGACC
1 TGTTCTCACAGTACAACTTGATAGGCATGGTCATAGACC
*
82222560 TGTTCTCATAGTACAACTTGATAGGCATGGTCATAGA
1 TGTTCTCACAGTACAACTTGATAGGCATGGTCATAGA
82222597 TCTTTTTAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (39 bp):
TGTTCTCACAGTACAACTTGATAGGCATGGTCATAGACC
Found at i:82227715 original size:19 final size:18
Alignment explanation
Indices: 82227693--82227732 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
82227683 TGAATAAAAC
82227693 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
82227712 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
82227730 TTA
1 TTA
82227733 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:82236124 original size:31 final size:32
Alignment explanation
Indices: 82236081--82236142 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
82236071 TAACAGCAAA
82236081 GTGAATTAAAT-AAAAA-TTTTCGAATAGTTCT
1 GTGAATTAAATAAAAAACTTTT-GAATAGTTCT
*
82236112 GTGACTTAAATAAAAAACTTTTGAATAGTTC
1 GTGAATTAAATAAAAAACTTTTGAATAGTTC
82236143 AAAAACAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 10 0.36
32 14 0.50
33 4 0.14
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (32 bp):
GTGAATTAAATAAAAAACTTTTGAATAGTTCT
Found at i:82238008 original size:12 final size:12
Alignment explanation
Indices: 82237986--82238018 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
82237976 GAGAAAGAAA
82237986 GAAAGGAAAAAGG
1 GAAA-GAAAAAGG
82237999 GAAAGAAAAAGG
1 GAAAGAAAAAGG
82238011 GAAAGAAA
1 GAAAGAAA
82238019 GAAATGGGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (12 bp):
GAAAGAAAAAGG
Found at i:82238828 original size:18 final size:19
Alignment explanation
Indices: 82238796--82238832 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
82238786 ATGAGGTACT
82238796 TTGTGTACTGCTACTGTTA
1 TTGTGTACTGCTACTGTTA
*
82238815 TTGT-TACTGTTACTGTTA
1 TTGTGTACTGCTACTGTTA
82238833 CCGTTATGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.16, C:0.14, G:0.19, T:0.51
Consensus pattern (19 bp):
TTGTGTACTGCTACTGTTA
Found at i:82238970 original size:18 final size:18
Alignment explanation
Indices: 82238947--82239053 Score: 135
Period size: 18 Copynumber: 5.9 Consensus size: 18
82238937 TAAATAAAGG
*
82238947 TACTGAATAACTAACTGC
1 TACTGAATAACTGACTGC
82238965 TACTGAATAACTGACTGC
1 TACTGAATAACTGACTGC
*
82238983 TACTGGATAACTGACTGC
1 TACTGAATAACTGACTGC
* *
82239001 TACTGAATAATTGACTGT
1 TACTGAATAACTGACTGC
* *
82239019 TACTGAATAATTTA-TCGC
1 TACTGAATAACTGACT-GC
*
82239037 TATTGAATAACTGACTG
1 TACTGAATAACTGACTG
82239054 TTAAAGAGTG
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
17 1 0.01
18 75 0.97
19 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.33
Consensus pattern (18 bp):
TACTGAATAACTGACTGC
Found at i:82244501 original size:37 final size:37
Alignment explanation
Indices: 82244438--82244620 Score: 131
Period size: 37 Copynumber: 4.7 Consensus size: 37
82244428 ATAGTATTAT
*
82244438 ATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
**** *
82244475 ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTATATAAGAATATT---TA
* * * *
82244515 ATATTTAATAATAATTATTTTAAATTATATTA-TATAGTATTA
1 ATA-TTAAGAAT--TT-TATTAAATTATATAAGAATA-T-TTA
*
82244557 TATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
82244595 ATATTAA-AATTTTATTAAATTATATA
1 ATATTAAGAATTTTATTAAATTATATA
82244621 TTTTTATTAA
Statistics
Matches: 114, Mismatches: 18, Indels: 29
0.71 0.11 0.18
Matches are distributed among these distances:
36 5 0.04
37 35 0.31
38 24 0.21
39 8 0.07
40 7 0.06
41 9 0.08
42 4 0.04
43 8 0.07
44 13 0.11
45 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (37 bp):
ATATTAAGAATTTTATTAAATTATATAAGAATATTTA
Found at i:82244506 original size:18 final size:18
Alignment explanation
Indices: 82244485--82244637 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
82244475 ATATTAAGAA
82244485 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
82244503 TTTTATTAAA-T-TATA-
1 TTTTATTAAATTATATAT
* *
82244518 -TTTAAT-AATAAT-TAT
1 TTTTATTAAATTATATAT
* * *
82244533 TTTAAATTATATTATATAG
1 TTT-TATTAAATTATATAT
* * *
82244552 TATTA-TATATTAT-GA-
1 TTTTATTAAATTATATAT
*
82244567 TTTTATTAAATTCATATAA
1 TTTTATTAAATT-ATATAT
*** *
82244586 GAATATTTAATATTA-A-AA
1 TTTTA-TTAA-ATTATATAT
82244604 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
82244622 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
82244638 TTAATAATAA
Statistics
Matches: 100, Mismatches: 20, Indels: 30
0.67 0.13 0.20
Matches are distributed among these distances:
13 2 0.02
14 7 0.07
15 5 0.05
16 16 0.16
17 18 0.18
18 37 0.37
19 7 0.07
20 5 0.05
21 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:82244559 original size:120 final size:120
Alignment explanation
Indices: 82244420--82244899 Score: 750
Period size: 120 Copynumber: 4.0 Consensus size: 120
82244410 ATTATTAATC
* * * *
82244420 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
* *
82244485 TTTTATTAAATTATATATTTTTATTA-AATTATATTTAATAATAATTATTTTAAAT
66 TTTTATTAAATTATATATTTTAATTATAA-TATATTTAATAATAATTATGTTAAAT
* * * *
82244540 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAA-AA
1 TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
*
82244604 TTTTATTAAATTATATATTTTTATTA-AATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTAATTATAA-TATATTTAATAATAATTATGTTAAAT
* * *
82244659 TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAA
1 TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
* *
82244724 TATTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATT
66 TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAAT
* *
82244779 TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAA
1 TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
82244844 TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
82244900 ATGATTAAAT
Statistics
Matches: 344, Mismatches: 13, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
119 112 0.33
120 225 0.65
121 7 0.02
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (120 bp):
TATATTATATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAGAA
TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAAT
Found at i:82244741 original size:15 final size:13
Alignment explanation
Indices: 82244732--82244787 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 13
82244722 AATATTATTA
82244732 AATTATATATTTT
1 AATTATATATTTT
82244745 AATTATAATATATTT
1 AATTAT-ATAT-TTT
* *
82244760 AATAATAATTATGTT
1 AATTAT-A-TATTTT
82244775 AATT-TATATTTT
1 AATTATATATTTT
82244787 A
1 A
82244788 TAGTATCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
12 6 0.17
13 7 0.19
14 5 0.14
15 15 0.42
16 3 0.08
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (13 bp):
AATTATATATTTT
Found at i:82244757 original size:16 final size:16
Alignment explanation
Indices: 82244736--82244778 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
82244726 TTATTAAATT
82244736 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
82244752 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
82244767 AT-TATGTTAATT
1 ATATATTTTAATT
82244779 TATATTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 2 0.09
15 16 0.70
16 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:82244877 original size:16 final size:16
Alignment explanation
Indices: 82244856--82244897 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
82244846 TTATTAAATT
*
82244856 ATATATTTTAATTATA
1 ATATATTTTAATAATA
82244872 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
82244887 AT-TATGTTTAA
1 ATATAT-TTTAA
82244898 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:82244882 original size:15 final size:15
Alignment explanation
Indices: 82244847--82244888 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
82244837 TTAAGAATTT
*
82244847 TATTAAATTAT-ATA
1 TATTTAATTATAATA
82244861 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
82244875 TATTTAATAATAAT
1 TATTTAATTATAAT
82244889 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:82245135 original size:16 final size:16
Alignment explanation
Indices: 82245114--82245181 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
82245104 GATTTGCTAT
82245114 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
82245130 TACACCTCTAATTCAT
1 TACACCTCTAATCCAA
82245146 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
82245162 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
82245178 TACA
1 TACA
82245182 ACGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:82246165 original size:34 final size:34
Alignment explanation
Indices: 82246127--82246197 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
82246117 AAAACCTCCA
*
82246127 TAACAAGCACATTTTAATAAAATATGCTTTTAGG
1 TAACAAGCACATTTTAATAAAATATACTTTTAGG
82246161 TAACAAGCACATTTTAATAAAATATACTTTTAGG
1 TAACAAGCACATTTTAATAAAATATACTTTTAGG
82246195 TAA
1 TAA
82246198 TTTTACATCC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.35
Consensus pattern (34 bp):
TAACAAGCACATTTTAATAAAATATACTTTTAGG
Found at i:82249724 original size:23 final size:23
Alignment explanation
Indices: 82249698--82249741 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
82249688 CATTTTATGA
82249698 AATT-TCATGTCATTAATAAATGT
1 AATTGTCATG-CATTAATAAATGT
*
82249721 AATTGTCATGCATTTATAAAT
1 AATTGTCATGCATTAATAAAT
82249742 CATAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (23 bp):
AATTGTCATGCATTAATAAATGT
Found at i:82262218 original size:13 final size:13
Alignment explanation
Indices: 82262200--82262245 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
82262190 GAAGCACGCG
82262200 TAAAACATATCTT
1 TAAAACATATCTT
*
82262213 TAAAACATAACTT
1 TAAAACATATCTT
*
82262226 TAAAATATATCTT
1 TAAAACATATCTT
*
82262239 GAAAACA
1 TAAAACA
82262246 ATAGCAGAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (13 bp):
TAAAACATATCTT
Found at i:82275273 original size:23 final size:23
Alignment explanation
Indices: 82275230--82275274 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
82275220 GAAAAGAACT
* *
82275230 GAAAAGAAATCTAAAGCCTAAAA
1 GAAAAGAAAACTAAAGACTAAAA
82275253 GAAAAGAAAACTAGAA-ACTAAA
1 GAAAAGAAAACTA-AAGACTAAA
82275275 TTATAAGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.64, C:0.11, G:0.13, T:0.11
Consensus pattern (23 bp):
GAAAAGAAAACTAAAGACTAAAA
Found at i:82275887 original size:13 final size:14
Alignment explanation
Indices: 82275869--82275901 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
82275859 TCAAGCAAGG
82275869 CAAAAAAA-AAAAA
1 CAAAAAAACAAAAA
*
82275882 CAAAAAAACAAAAG
1 CAAAAAAACAAAAA
82275896 CAAAAA
1 CAAAAA
82275902 CGTATCTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00
Consensus pattern (14 bp):
CAAAAAAACAAAAA
Found at i:82279427 original size:26 final size:26
Alignment explanation
Indices: 82279398--82279505 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
82279388 TGGTACAAAT
82279398 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
82279424 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82279450 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82279476 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82279502 TGAT
1 TGAT
82279506 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82280813 original size:28 final size:26
Alignment explanation
Indices: 82280768--82280842 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
82280758 AAAAGTAGCT
* * *
82280768 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
* *
82280796 AAATTACTGTTATGCCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
82280822 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
82280843 GGTTACTTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.55
27 1 0.03
28 17 0.43
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:82281057 original size:27 final size:27
Alignment explanation
Indices: 82280948--82281079 Score: 117
Period size: 27 Copynumber: 4.9 Consensus size: 27
82280938 GGAAGCGTCT
* * *
82280948 TGGTGGCTATGCCACAATTTATATAATC
1 TGGTGGCTATGCCACAATATCTGT-ATC
* * *
82280976 TGGTGGCTTTGCCACATATATTTGT-CC
1 TGGTGGCTATGCCACA-ATATCTGTATC
82281003 TGGTGGCTATGCCACAATTATCTG-ATC
1 TGGTGGCTATGCCACAA-TATCTGTATC
* *
82281030 TGGTGGCTCTGCCACAATATCGGTATC
1 TGGTGGCTATGCCACAATATCTGTATC
* *
82281057 TGGTGACT-TCGTCACAATATCTG
1 TGGTGGCTAT-GCCACAATATCTG
82281080 ACAGCCTCAC
Statistics
Matches: 86, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
26 7 0.08
27 59 0.69
28 15 0.17
29 5 0.06
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (27 bp):
TGGTGGCTATGCCACAATATCTGTATC
Found at i:82281061 original size:54 final size:55
Alignment explanation
Indices: 82280948--82281053 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 55
82280938 GGAAGCGTCT
* **
82280948 TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTTTGCCACATATATTTGTCC
1 TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTCTGCCACATATATCGGTCC
* *
82281003 TGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACA-ATATCGGT
1 TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTCTGCCACATATATCGGT
82281054 ATCTGGTGAC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
53 6 0.13
54 23 0.50
55 17 0.37
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.35
Consensus pattern (55 bp):
TGGTGGCTATGCCACAATTTATATAATCTGGTGGCTCTGCCACATATATCGGTCC
Found at i:82284942 original size:85 final size:85
Alignment explanation
Indices: 82284799--82284977 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
82284789 GGCCGGCCAT
82284799 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
82284864 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
82284884 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
82284949 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
82284969 GGGCATGGG
1 GAGCATGGG
82284978 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:82287208 original size:47 final size:47
Alignment explanation
Indices: 82287157--82287496 Score: 473
Period size: 47 Copynumber: 7.1 Consensus size: 47
82287147 TTAGGATTTT
*
82287157 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
82287204 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
82287255 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
82287302 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
82287349 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
*
82287400 ATGTGATGAATGTGAACATGCGTATGTGTAATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
82287447 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
82287494 ATG
1 ATG
82287497 CGAAACGTGT
Statistics
Matches: 261, Mismatches: 24, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
47 171 0.66
49 4 0.02
51 86 0.33
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:82287268 original size:98 final size:94
Alignment explanation
Indices: 82287157--82287496 Score: 473
Period size: 98 Copynumber: 3.5 Consensus size: 94
82287147 TTAGGATTTT
* *
82287157 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
***
82287222 CGTATATATATGTGTGATAAGGCCGAATGGCCA
64 C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
82287255 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
82287320 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
**
82287349 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
82287414 AACATGCGTATGTGTAATAAGGCCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * * *
82287447 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
82287497 CGAAACGTGT
Statistics
Matches: 221, Mismatches: 17, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
94 71 0.32
96 3 0.01
98 147 0.67
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:82287307 original size:145 final size:145
Alignment explanation
Indices: 82287157--82287496 Score: 608
Period size: 145 Copynumber: 2.3 Consensus size: 145
82287147 TTAGGATTTT
82287157 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
82287222 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTAAT
82287287 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
*
82287302 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
82287367 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTAAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTAAT
82287432 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
* ** * * *
82287447 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
82287497 CGAAACGTGT
Statistics
Matches: 186, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
145 186 1.00
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (145 bp):
ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTAAT
AAGGCCGAATGGCCA
Found at i:82287885 original size:37 final size:37
Alignment explanation
Indices: 82287703--82287884 Score: 301
Period size: 37 Copynumber: 4.9 Consensus size: 37
82287693 GGAAATATAT
*
82287703 TCCGGGTAAGACCCGACGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
82287740 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
82287777 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
** *
82287814 TCCGGGTAAGACTGGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
82287851 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
82287885 TCGTTTGAGC
Statistics
Matches: 136, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 136 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:82291193 original size:17 final size:17
Alignment explanation
Indices: 82291171--82291210 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
82291161 GTAAATTTCG
82291171 AGGAGGAAATTTCTTTA
1 AGGAGGAAATTTCTTTA
**
82291188 AGGAGGGTATTTCTTTA
1 AGGAGGAAATTTCTTTA
82291205 AGGAGG
1 AGGAGG
82291211 GTAGAGTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.30, C:0.05, G:0.33, T:0.33
Consensus pattern (17 bp):
AGGAGGAAATTTCTTTA
Found at i:82291211 original size:17 final size:17
Alignment explanation
Indices: 82291179--82291213 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
82291169 CGAGGAGGAA
82291179 ATTTCTTTAAGGAGGGT
1 ATTTCTTTAAGGAGGGT
82291196 ATTTCTTTAAGGAGGGT
1 ATTTCTTTAAGGAGGGT
82291213 A
1 A
82291214 GAGTTGTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.26, C:0.06, G:0.29, T:0.40
Consensus pattern (17 bp):
ATTTCTTTAAGGAGGGT
Found at i:82291569 original size:26 final size:26
Alignment explanation
Indices: 82291540--82291647 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82291530 TGGTACAAAT
82291540 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82291566 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82291592 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82291618 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82291644 TGAT
1 TGAT
82291648 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82292951 original size:28 final size:26
Alignment explanation
Indices: 82292909--82292983 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
82292899 AAAAGTAGCT
* * *
82292909 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
* *
82292937 AAATTACTGTTATACTCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
* *
82292963 AAATTACCGTTATACCTCTAG
1 AAATTACTGTTATACCCCTAG
82292984 GGTTACTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 21 0.54
27 1 0.03
28 17 0.44
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:82293139 original size:27 final size:26
Alignment explanation
Indices: 82293108--82293229 Score: 138
Period size: 27 Copynumber: 4.5 Consensus size: 26
82293098 TGTCCCAATT
*
82293108 TATCTAATCTGATGGCTCTGCCACATA
1 TATCT-ATCTGGTGGCTCTGCCACATA
* *
82293135 TATCTGTCCTGGTGGCTATGCCACA-A
1 TATCTAT-CTGGTGGCTCTGCCACATA
82293161 TTATCTGATCTGGTGGCTCTGCCACATA
1 -TATCT-ATCTGGTGGCTCTGCCACATA
*
82293189 TATCTGTTCTGGTGGCTCTGCCACAATA
1 TATCT-ATCTGGTGGCTCTGCCAC-ATA
*
82293217 TTTCTATCTGGTG
1 TATCTATCTGGTG
82293230 ACTTCATCAC
Statistics
Matches: 82, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
26 2 0.02
27 71 0.87
28 9 0.11
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (26 bp):
TATCTATCTGGTGGCTCTGCCACATA
Found at i:82293182 original size:54 final size:53
Alignment explanation
Indices: 82293085--82293229 Score: 202
Period size: 54 Copynumber: 2.7 Consensus size: 53
82293075 TGGAGGAAGC
*
82293085 GTCCTGGTGGCTATGTCC-CAATTTATCTAATCTGATGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATG-CCACAA-TTATCT-ATCTGGTGGCTCTGCCACATATATCT
82293140 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCT-ATCTGGTGGCTCTGCCACATATATCT
* * *
82293194 GTTCTGGTGGCTCTGCCACAATATTTCTATCTGGTG
1 GTCCTGGTGGCTATGCCACAAT-TATCTATCTGGTG
82293230 ACTTCATCAC
Statistics
Matches: 83, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
54 61 0.73
55 22 0.27
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (53 bp):
GTCCTGGTGGCTATGCCACAATTATCTATCTGGTGGCTCTGCCACATATATCT
Found at i:82293226 original size:32 final size:28
Alignment explanation
Indices: 82293115--82293218 Score: 142
Period size: 27 Copynumber: 3.8 Consensus size: 28
82293105 ATTTATCTAA
*
82293115 TCTGATGGCTCTGCCACATA-TATCTGT
1 TCTGGTGGCTCTGCCACATATTATCTGT
* * *
82293142 CCTGGTGGCTATGCCACA-ATTATCTGA
1 TCTGGTGGCTCTGCCACATATTATCTGT
82293169 TCTGGTGGCTCTGCCACATA-TATCTGT
1 TCTGGTGGCTCTGCCACATATTATCTGT
82293196 TCTGGTGGCTCTGCCACAATATT
1 TCTGGTGGCTCTGCCAC-ATATT
82293219 TCTATCTGGT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
26 1 0.02
27 60 0.91
28 4 0.06
29 1 0.02
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACATATTATCTGT
Found at i:82295044 original size:21 final size:21
Alignment explanation
Indices: 82294994--82295044 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
82294984 TTTTTTTAGG
*
82294994 ATTTCTTTTATCGTGTTTTGA
1 ATTTCTTTTATCGTGTTGTGA
* *
82295015 TTTTTTTTTATTC-TGTTGTGA
1 ATTTCTTTTA-TCGTGTTGTGA
82295036 ATTTCTTTT
1 ATTTCTTTT
82295045 GGGAGGGGCC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.12, C:0.08, G:0.12, T:0.69
Consensus pattern (21 bp):
ATTTCTTTTATCGTGTTGTGA
Found at i:82307537 original size:21 final size:20
Alignment explanation
Indices: 82307478--82307537 Score: 54
Period size: 19 Copynumber: 3.0 Consensus size: 20
82307468 ACAAATAGTC
82307478 ATAAATGCAATTACTTAAT-
1 ATAAATGCAATTACTTAATA
* *
82307497 AT-GATGTCAATT-CATGAATA
1 ATAAATG-CAATTAC-TTAATA
82307517 AGTAAATGCAATTACTTAATA
1 A-TAAATGCAATTACTTAATA
82307538 TGGTATGCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
18 4 0.13
19 11 0.35
20 1 0.03
21 11 0.35
22 4 0.13
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (20 bp):
ATAAATGCAATTACTTAATA
Found at i:82308364 original size:13 final size:13
Alignment explanation
Indices: 82308346--82308371 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82308336 AGAGCTTTTG
82308346 TAAGCAATTTAAC
1 TAAGCAATTTAAC
82308359 TAAGCAATTTAAC
1 TAAGCAATTTAAC
82308372 CCTGATATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
TAAGCAATTTAAC
Found at i:82310340 original size:12 final size:12
Alignment explanation
Indices: 82310325--82310356 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
82310315 CACTGTAAGG
82310325 GTAACAGTAATA
1 GTAACAGTAATA
*
82310337 GTAATAGTAATA
1 GTAACAGTAATA
82310349 GTAACAGT
1 GTAACAGT
82310357 CAGGTACGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (12 bp):
GTAACAGTAATA
Found at i:82312636 original size:19 final size:19
Alignment explanation
Indices: 82312608--82312644 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
82312598 AGTGCCATAT
82312608 TAATAATATTA-AAATAAA
1 TAATAATATTAGAAATAAA
82312626 TAATGAATATTAGAAATAA
1 TAAT-AATATTAGAAATAA
82312645 CTTATTGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 7 0.41
20 6 0.35
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
TAATAATATTAGAAATAAA
Found at i:82313901 original size:16 final size:16
Alignment explanation
Indices: 82313876--82313906 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82313866 TATATAGATC
*
82313876 ATATATATTAAATTTG
1 ATATAAATTAAATTTG
82313892 ATATAAATTAAATTT
1 ATATAAATTAAATTT
82313907 TTTAATTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
ATATAAATTAAATTTG
Found at i:82320873 original size:19 final size:19
Alignment explanation
Indices: 82320849--82320892 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
82320839 TAAAAGCAAC
82320849 ACAACATCAACCCAAATAA
1 ACAACATCAACCCAAATAA
* **
82320868 ACAACATTAGTCCAAATAA
1 ACAACATCAACCCAAATAA
82320887 ACAACA
1 ACAACA
82320893 AAAACAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.57, C:0.27, G:0.02, T:0.14
Consensus pattern (19 bp):
ACAACATCAACCCAAATAA
Found at i:82321392 original size:9 final size:9
Alignment explanation
Indices: 82321356--82321385 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
82321346 ATTCGAAAAA
82321356 AATTCGAGTT
1 AATTCGA-TT
82321366 AATTCGATT
1 AATTCGATT
82321375 AATTCGATT
1 AATTCGATT
82321384 AA
1 AA
82321386 CTTGATTCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.65
10 7 0.35
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (9 bp):
AATTCGATT
Found at i:82329316 original size:21 final size:20
Alignment explanation
Indices: 82329278--82329317 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
82329268 TACATGTGTG
82329278 TTTTGATGATTTATGATAGA
1 TTTTGATGATTTATGATAGA
82329298 TTTTGAATG-TTTGATGATAG
1 TTTTG-ATGATTT-ATGATAG
82329318 TTATACAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.50
Consensus pattern (20 bp):
TTTTGATGATTTATGATAGA
Found at i:82340480 original size:3 final size:3
Alignment explanation
Indices: 82340474--82340520 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
82340464 ATGATTGTTT
*
82340474 ATC ATC ATC ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
82340521 ATATTTCTGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.34, C:0.30, G:0.00, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:82348542 original size:34 final size:34
Alignment explanation
Indices: 82348499--82348610 Score: 179
Period size: 34 Copynumber: 3.3 Consensus size: 34
82348489 TGACTGCTAC
*
82348499 TGATACTGTGATGGGCTAAGGCCCTAATGCACAT
1 TGATACTGTGATGGGCTAAGGCCCTAATGCATAT
*
82348533 TGATACTGTGATGGGCTAAGGCCCTAATGCATAC
1 TGATACTGTGATGGGCTAAGGCCCTAATGCATAT
* *
82348567 TGATATTGTGATGGGCTAAGGCCCTACTGCATATT
1 TGATACTGTGATGGGCTAAGGCCCTAATGCATA-T
82348602 TGATACTGT
1 TGATACTGT
82348611 ACTAAGATGG
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
34 63 0.89
35 8 0.11
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (34 bp):
TGATACTGTGATGGGCTAAGGCCCTAATGCATAT
Found at i:82348643 original size:74 final size:68
Alignment explanation
Indices: 82348496--82348648 Score: 173
Period size: 68 Copynumber: 2.2 Consensus size: 68
82348486 GTATGACTGC
* * *
82348496 TACTGATACTGTGATGGGCTAAGGCCCTAATGCACATTGATACTGTGATGGGCTAAGGCCCTAAT
1 TACTGATACTGTGATGGGCTAAGGCCCTAATGCACATTGATACTGTGATGGGCAAAGGCCCAAAC
82348561 GCA
66 GCA
* * *
82348564 TACTGATATTGTGATGGGCTAAGGCCCTACTGCATATTTGATACTGTACTAAGATGGGCAAAGGC
1 TACTGATACTGTGATGGGCTAAGGCCCTAATGCACA-TTGATACTG---T--GATGGGCAAAGGC
*
82348629 CCAAAC-CGT
60 CCAAACGC-A
82348638 TACTGATACTG
1 TACTGATACTG
82348649 AAAGGGGCTT
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
68 33 0.47
69 9 0.13
72 1 0.01
73 1 0.01
74 26 0.37
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (68 bp):
TACTGATACTGTGATGGGCTAAGGCCCTAATGCACATTGATACTGTGATGGGCAAAGGCCCAAAC
GCA
Found at i:82359786 original size:46 final size:46
Alignment explanation
Indices: 82359730--82359902 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
82359720 TGGTTGAGCA
82359730 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
82359776 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
82359821 CATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82359869 CCCGAGCTCGTTGATTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82359903 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82359888 original size:93 final size:93
Alignment explanation
Indices: 82359727--82359897 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
82359717 GGATGGTTGA
* *
82359727 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82359792 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
82359820 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACGCCCGAGCTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82359885 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82359898 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:82363176 original size:52 final size:52
Alignment explanation
Indices: 82363114--82363255 Score: 156
Period size: 52 Copynumber: 2.9 Consensus size: 52
82363104 AAACCCAATT
* * *
82363114 ACATGTATCGCGTCCATAATGAACTTGGACCAACTCAATGAGCTCGGATGTC
1 ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGTC
* * *
82363166 ACATGTATCGCATCCATTATGAACTCGGATCAACTCAACGAGCTTGGATG--
1 ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGTC
* *
82363216 -C-TG----GCATCCATAATGAACTCAGACCAACTTAACGAGCTCG
1 ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCG
82363256 AATGCCTCAT
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
44 32 0.41
48 2 0.03
49 1 0.01
52 44 0.56
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (52 bp):
ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGTC
Found at i:82366058 original size:15 final size:15
Alignment explanation
Indices: 82366033--82366086 Score: 65
Period size: 15 Copynumber: 3.6 Consensus size: 15
82366023 GAGATGACAT
*
82366033 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* *
82366048 GAAGTCCAAGAGAAA
1 GAAATCCAAGATAAA
82366063 GAAATCCAAGATACAA
1 GAAATCCAAGATA-AA
82366079 -AAATCCAA
1 GAAATCCAA
82366087 AATACAATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
15 31 0.94
16 2 0.06
ACGTcount: A:0.59, C:0.17, G:0.15, T:0.09
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:82366091 original size:15 final size:15
Alignment explanation
Indices: 82366064--82366093 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82366054 CAAGAGAAAG
*
82366064 AAATCCAAGATACAA
1 AAATCCAAAATACAA
82366079 AAATCCAAAATACAA
1 AAATCCAAAATACAA
82366094 TATCATAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.20, G:0.03, T:0.13
Consensus pattern (15 bp):
AAATCCAAAATACAA
Found at i:82370049 original size:44 final size:44
Alignment explanation
Indices: 82369984--82370071 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
82369974 GTCACATGTA
* * *
82369984 TCGCATCCATTATGAACTCAGATCAACTCAACGAGCTCGGATGC
1 TCGCATCCATTATGAAATCAGACCAACTCAACGAGCTCGAATGC
* *
82370028 TCGCATCTATTATGAAATCAGACCAACTCAATGAGCTCGAATGC
1 TCGCATCCATTATGAAATCAGACCAACTCAACGAGCTCGAATGC
82370072 CTCATACATA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (44 bp):
TCGCATCCATTATGAAATCAGACCAACTCAACGAGCTCGAATGC
Found at i:82376157 original size:34 final size:34
Alignment explanation
Indices: 82376114--82376194 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 34
82376104 GCATGACTGC
* *
82376114 TACTGATACTATGATAGGCTAAGGTCCTAATGCA
1 TACTGATACTATGATAGGCTAAGGCCCTAATACA
* * *
82376148 TACTGATACTGTGATGGGCTAAGGCCCTACTACA
1 TACTGATACTATGATAGGCTAAGGCCCTAATACA
*
82376182 TATTTGATACTAT
1 TA-CTGATACTAT
82376195 ACTGAAATGG
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
34 31 0.79
35 8 0.21
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (34 bp):
TACTGATACTATGATAGGCTAAGGCCCTAATACA
Found at i:82379809 original size:48 final size:48
Alignment explanation
Indices: 82379732--82379832 Score: 166
Period size: 48 Copynumber: 2.1 Consensus size: 48
82379722 TATATATTGT
* *
82379732 CACCCTAATTGCCCGACAACGATGGTTTTCTCAATTGGATTAATCTGC
1 CACCCTAATTGCCCAACAACGATGATTTTCTCAATTGGATTAATCTGC
* *
82379780 CACCCTGATTGCCCAACAATGATGATTTTCTCAATTGGATTAATCTGC
1 CACCCTAATTGCCCAACAACGATGATTTTCTCAATTGGATTAATCTGC
82379828 CACCC
1 CACCC
82379833 AAGGTTTCCC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.31
Consensus pattern (48 bp):
CACCCTAATTGCCCAACAACGATGATTTTCTCAATTGGATTAATCTGC
Found at i:82381462 original size:40 final size:40
Alignment explanation
Indices: 82381403--82381498 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
82381393 TTTTTGAATC
* *
82381403 AATG-AAAGGTTGAAAAGGATGTTATCCGAAAGGATAACA
1 AATGAAAAGGTTGAAAAGGATGTCATCCAAAAGGATAACA
* * *
82381442 AATGAAAAGGTTGAACAGGATGTCATCTAAAAGGATAATA
1 AATGAAAAGGTTGAAAAGGATGTCATCCAAAAGGATAACA
* *
82381482 GATGAAAAGGTCGAAAA
1 AATGAAAAGGTTGAAAA
82381499 TGATATCAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 4 0.08
40 44 0.92
ACGTcount: A:0.48, C:0.07, G:0.25, T:0.20
Consensus pattern (40 bp):
AATGAAAAGGTTGAAAAGGATGTCATCCAAAAGGATAACA
Found at i:82382905 original size:42 final size:42
Alignment explanation
Indices: 82382842--82382928 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
82382832 CTTACCTCGC
* *
82382842 GAAAGTGCTAGGGGTTTCATCGACTTCGTTGAAATCGGGGTA
1 GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
82382884 GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
1 GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
82382926 GAA
1 GAA
82382929 GGGATCCTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.25
Consensus pattern (42 bp):
GAAAGTGCCAGGGGTTCCATCGACTTCGTTGAAATCGGGGTA
Found at i:82384386 original size:16 final size:17
Alignment explanation
Indices: 82384362--82384407 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
82384352 CATGTTTTTG
*
82384362 TCATGTATTTTTTG-TA
1 TCATATATTTTTTGATA
82384378 TCATATATTTTTTGTACTA
1 TCATATATTTTTTG-A-TA
82384397 TCATATATTTT
1 TCATATATTTT
82384408 GTTAACTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 13 0.50
19 13 0.50
ACGTcount: A:0.24, C:0.09, G:0.07, T:0.61
Consensus pattern (17 bp):
TCATATATTTTTTGATA
Found at i:82385305 original size:131 final size:130
Alignment explanation
Indices: 82385111--82385451 Score: 334
Period size: 130 Copynumber: 2.6 Consensus size: 130
82385101 GCGTTTGACA
* * * * * * *
82385111 ATTTGAGAATCATGCCCTATCCTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACGATCGAACATT
1 ATTTGAGAATCATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGCTCAAAACAATCGAACATC
* * **
82385176 CCTTTA-TATTCTCACTCATGTTT-ATAAAAAATAC-TTAAAAATGAAGACGATGTTCAATATTT
66 CCTTCAGAATT-TCACTCACATTTCAT--AAAAT-CTTTAAAAATGAAGACGATGTTCAATATTT
82385238 GGCG
127 GGCG
* * *
82385242 ATTTGAGAATCATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGTTCGAAACAATTGAACATC
1 ATTTGAGAATCATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGCTCAAAACAATCGAACATC
* * * * * *
82385307 CCTTCAGAATTTCACTCACATTTCCTAAAATCTTTCAAAATGAAGGCGATGTTCGATGTTTGGTG
66 CCTTCAGAATTTCACTCACATTTCATAAAATCTTTAAAAATGAAGACGATGTTCAATATTTGGCG
* * * * * *
82385372 ATTTGAGAATCGA-GCCCTATCGTGTTGGGTTGCGCTTTTTTATTTG-TCCAAAATAATCGAATA
1 ATTTGAGAATC-ATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGCT-CAAAACAATCGAACA
*
82385435 TCTCC-TCAAAATTTCAC
64 TC-CCTTCAGAATTTCAC
82385452 ACGTATTTTA
Statistics
Matches: 175, Mismatches: 29, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
129 2 0.01
130 96 0.55
131 73 0.42
132 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (130 bp):
ATTTGAGAATCATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGCTCAAAACAATCGAACATC
CCTTCAGAATTTCACTCACATTTCATAAAATCTTTAAAAATGAAGACGATGTTCAATATTTGGCG
Found at i:82397074 original size:44 final size:44
Alignment explanation
Indices: 82396999--82397478 Score: 638
Period size: 44 Copynumber: 10.9 Consensus size: 44
82396989 GAATCCTACG
* * * *
82396999 GATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* * * *
82397043 AATTTGGCGACTCTGTATTGGCAGACAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* * *
82397087 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
*
82397131 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* * *
82397175 GATTTGGCATCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
82397219 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* ** * *
82397263 AATTTGGCACCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* *
82397307 GATTTGGCGTCTCTGTATTGGTGAAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* *
82397351 GATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
* * * * * *
82397395 GACTTGGCGTCTCTGTAGTGTCAGAGGGCGGATCGAAGAT-GACA
1 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG-CA
* * *
82397439 GATTTGGCGTCTCTGTGATTGACAGAGAGCAAATCGAAGA
1 GATTTGGCGTCTCTGT-ATTGGCGGAGAGCAGATCGAAGA
82397479 CAACGAATCT
Statistics
Matches: 380, Mismatches: 54, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
43 1 0.00
44 361 0.95
45 18 0.05
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
Found at i:82400921 original size:130 final size:130
Alignment explanation
Indices: 82400690--82400928 Score: 300
Period size: 130 Copynumber: 1.8 Consensus size: 130
82400680 AAAATACTTA
** * * *
82400690 AAAACGAAGACGATGTTCAATATTTGGCGATTTGAGAATCGTTCCCTATCGTGCTGGGTTGCACT
1 AAAACGAAGACGATGTTCAATATTTGGCGATTTGAGAATCGAGCCCTATCATGCTGGGCTACACT
* * *
82400755 TTTTCATTGGTTCGAAACAATTGACCATCCCTTCGGAATTTCACTCACATTTCTTAAAATCTTTC
66 TTTTCATTGGTCCAAAACAATTGAACATCCCTTCGGAATTTCACTCACATTTCTTAAAATCTTTC
* * * * * *
82400820 AAAATGAAGGCGATGTTCGATGTTTGGCGATTTGAGAATCGAGCCCTATCATGTTGGGCTACGCT
1 AAAACGAAGACGATGTTCAATATTTGGCGATTTGAGAATCGAGCCCTATCATGCTGGGCTACACT
* * * *
82400885 TTTTTATTTGTCCAAAATAATTGAATATCTCC-TCGGAATTTCAC
66 TTTTCATTGGTCCAAAACAATTGAACATC-CCTTCGGAATTTCAC
82400929 ACGTATTTTA
Statistics
Matches: 90, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
130 88 0.98
131 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (130 bp):
AAAACGAAGACGATGTTCAATATTTGGCGATTTGAGAATCGAGCCCTATCATGCTGGGCTACACT
TTTTCATTGGTCCAAAACAATTGAACATCCCTTCGGAATTTCACTCACATTTCTTAAAATCTTTC
Found at i:82406783 original size:40 final size:40
Alignment explanation
Indices: 82406714--82406938 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
82406704 AAACCAAGTA
* *
82406714 CCTTCGGGATTTAG-CCGGATATCA-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGTAACTCGCACAAATG
* *
82406753 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
82406793 CCTTCGGGTCTTAGCCCAGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
82406833 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
*
82406876 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
82406916 CCTCCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
82406939 CATCCGAATA
Statistics
Matches: 157, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
39 13 0.08
40 108 0.69
42 1 0.01
43 35 0.22
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Done.