Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 249 of 343
Found at i:82406914 original size:83 final size:80
Alignment explanation
Indices: 82406714--82406938 Score: 283
Period size: 83 Copynumber: 2.8 Consensus size: 80
82406704 AAACCAAGTA
* * * *
82406714 CCTTCGGGATTTAG-CCGGATATCA-CAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
1 CCTTCGGGACTTAGCCCGGATAT-AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
82406777 GTAACTCGCACACATG
65 GCAACTCGCACACATG
* * * * *
82406793 CCTTCGGGTCTTAGCCCAGAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
82406858 CAACTACTCACACAAATG
66 CAACT-CGCACAC--ATG
* *
82406876 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTCCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
82406939 CATCCGAATA
Statistics
Matches: 123, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
79 13 0.11
80 45 0.37
81 6 0.05
83 59 0.48
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
CAACTCGCACACATG
Found at i:82415177 original size:40 final size:40
Alignment explanation
Indices: 82415108--82415332 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
82415098 AAACCAAGTA
* * *
82415108 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82415147 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
82415187 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82415227 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
*
82415270 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82415310 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
82415333 CATCCGAATA
Statistics
Matches: 162, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 12 0.07
40 113 0.70
42 1 0.01
43 36 0.22
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82415295 original size:83 final size:80
Alignment explanation
Indices: 82415108--82415332 Score: 301
Period size: 83 Copynumber: 2.8 Consensus size: 80
82415098 AAACCAAGTA
* * * *
82415108 CCTTCGGGATTTAG-CCGGATATCG-CAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
82415171 GTAACTCGCACACATG
65 GAAACTCGCACAAATG
* * *
82415187 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
82415252 CAACTACTCGCACAAATG
66 -AA--ACTCGCACAAATG
* *
82415270 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
82415333 CATCCGAATA
Statistics
Matches: 127, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 12 0.09
80 43 0.34
81 2 0.02
83 70 0.55
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
AAACTCGCACAAATG
Found at i:82441555 original size:48 final size:48
Alignment explanation
Indices: 82441503--82441594 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
82441493 GAAGGGATGG
* * * *
82441503 ATAGTGATAGGCGTGTAGACAGTGGAAGATCAAGTTTAGCAATGATAA
1 ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATGATAA
82441551 ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATG
1 ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATG
82441595 CATAGCATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.39, C:0.08, G:0.29, T:0.24
Consensus pattern (48 bp):
ATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATGATAA
Found at i:82446433 original size:15 final size:15
Alignment explanation
Indices: 82446413--82446458 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
82446403 ACTACCACAT
* *
82446413 TTATTATTCTCGTTA
1 TTATTATTATCATTA
82446428 TTATTATTATCATTA
1 TTATTATTATCATTA
*
82446443 TTATTACTATCATTA
1 TTATTATTATCATTA
82446458 T
1 T
82446459 AATTTAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.59
Consensus pattern (15 bp):
TTATTATTATCATTA
Found at i:82449180 original size:27 final size:27
Alignment explanation
Indices: 82449140--82449232 Score: 73
Period size: 27 Copynumber: 3.4 Consensus size: 27
82449130 TTTATTAAAC
* *
82449140 TTTTTGAAACATTTTATATTTTTGAAT
1 TTTTTAAAATATTTTATATTTTTGAAT
82449167 TTTTTAAAATATTTTATAATTATTATGAAT
1 TTTTTAAAATATTTTAT-ATT-TT-TGAAT
* * * * *
82449197 ATTAT-ATATATTTCA-ATTTTTGTTAT
1 TTTTTAAAATATTTTATATTTTTG-AAT
82449223 TTTTTAAAAT
1 TTTTTAAAAT
82449233 TCAACCAATT
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
25 2 0.04
26 7 0.14
27 21 0.41
28 3 0.06
29 10 0.20
30 8 0.16
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.59
Consensus pattern (27 bp):
TTTTTAAAATATTTTATATTTTTGAAT
Found at i:82452210 original size:19 final size:20
Alignment explanation
Indices: 82452167--82452213 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
82452157 AAAAGCAAAG
82452167 AAAAATAGATAAATAATAAGT
1 AAAAATA-ATAAATAATAAGT
*
82452188 -AAAATAATAAATGATAA-T
1 AAAAATAATAAATAATAAGT
82452206 AAAAATAA
1 AAAAATAA
82452214 ATTTAGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 1 0.04
19 17 0.71
20 6 0.25
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.23
Consensus pattern (20 bp):
AAAAATAATAAATAATAAGT
Found at i:82452356 original size:3 final size:3
Alignment explanation
Indices: 82452348--82452374 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
82452338 GGGATTTAAA
82452348 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
82452375 GATGATGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:82452379 original size:3 final size:3
Alignment explanation
Indices: 82452373--82452399 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
82452363 AATAATAATA
82452373 ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG
82452400 GTAATATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:82452578 original size:3 final size:3
Alignment explanation
Indices: 82452566--82452742 Score: 112
Period size: 3 Copynumber: 59.3 Consensus size: 3
82452556 TTAAATTATT
* *
82452566 TAA T-A TAA TAA TAA TAA CTTA TATG TAAA TAA -AA -AA TATA TAA TAA
1 TAA TAA TAA TAA TAA TAA -TAA TA-A T-AA TAA TAA TAA TA-A TAA TAA
* * * * * *
82452612 TAA TAA TAA TAG TAA T-A CAA TAG TAA TAA TAA TAA TAA CAA AAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** ** * * * *
82452659 TAA TAA TAA TGG CCA TAA AAA TAA TAG TAA TAG TAG TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
82452707 TAA TAA TAA T-A TAG TAA TAA TAA TAT TAT TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
82452743 GAAAATTAAA
Statistics
Matches: 134, Mismatches: 32, Indels: 16
0.74 0.18 0.09
Matches are distributed among these distances:
2 9 0.07
3 117 0.87
4 7 0.05
5 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:82454164 original size:44 final size:44
Alignment explanation
Indices: 82454110--82454238 Score: 222
Period size: 44 Copynumber: 2.9 Consensus size: 44
82454100 TCTAATCCAC
*
82454110 TGTAACTTCAGGGAGATGAGACTTGTAGCTTCGATTTACTCTAA
1 TGTAATTTCAGGGAGATGAGACTTGTAGCTTCGATTTACTCTAA
82454154 TGTAATTTCAGGGAGATGAGACTTGTAGCTTCGATTTACTCTAA
1 TGTAATTTCAGGGAGATGAGACTTGTAGCTTCGATTTACTCTAA
* * *
82454198 TGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTC
1 TGTAATTTCAGGGAGATGAGACTTGTAGCTTCGATTTACTC
82454239 CGCTGGAACT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 81 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (44 bp):
TGTAATTTCAGGGAGATGAGACTTGTAGCTTCGATTTACTCTAA
Found at i:82454604 original size:275 final size:273
Alignment explanation
Indices: 82454181--82455195 Score: 1172
Period size: 275 Copynumber: 3.7 Consensus size: 273
82454171 GAGACTTGTA
** *
82454181 GCTTCGATTTACTCTAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGA
1 GCTTCGATCCACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGA
* * * * **
82454246 ACTTAAAGGAGATAAGAATCACTGTTTTCAGTCTGCTTCGCTGCAACTTTAGGGAGATAAGGCTG
66 ACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAGGGCCA
* ** * * * *
82454311 GTGGCTTCAATCTGCTCCACTGCGTCTTCAAGAAGATAACATCCTCCATGATTTGTGACTTTAAT
131 GTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCAT-ATTTGT-ACTTCAAT
*
82454376 CTGTCCCACTGCAACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGCTTC-GCTACAACTTCA
194 CTGTTCCACTGCAACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGC-TCAGCTACAACTTCA
*
82454440 GAGAGATAGGGATGGT
258 GAGAGATAGGGCTGGT
*
82454456 GCTTCGATCCACTCCAATGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGA
1 GCTTCGATCCACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGA
* *
82454521 ACTTCAAGGAGGTAAGAATCACTGTCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAGGGCCA
66 ACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAGGGCCA
* *
82454586 ATGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAGTTCGTAGCTTCAAT
131 GTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATA-TTTGTA-CTTCAAT
* * *
82454651 CTGTTCCACTACAACTCCAGGGAAATAAGATTCGTTGTCTTTAGTCTGCTCAGCTACAACTTCAG
194 CTGTTCCACTGCAACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGCTCAGCTACAACTTCAG
*
82454716 GGAGATAGGGCTGGT
259 AGAGATAGGGCTGGT
* * * * *
82454731 GCTGCGATCCATTCCAATGTAATTTCAGGGAGAAGAGATTTGCAGCTTCGATCTACTCCACTGAA
1 GCTTCGATCCACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGA
* *
82454796 ACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGAGAGATAGGGCCA
66 ACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAGGGCCA
* * * *
82454861 GTGGCTTTAATCTACTCCATTGCAACTTCAGGAAGATATGATCCGCTATAATTTGTAACTTCAAT
131 GTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCAT-ATTTGT-ACTTCAAT
* ** * * * *
82454926 TTGTTCCACTGCAAC-TCTAGAAAAATAAGATTCACTT-TCTTCAGTCTGCTCTGCTGCAACTTT
194 CTGTTCCACTGCAACTTC-AGGGAAATAAGATTC-GTTGTCTTCAGTCTGCTCAGCTACAACTTC
*
82454989 AGAGAGATAAGGCTGGT
257 AGAGAGATAGGGCTGGT
* * * ** * * * **
82455006 GGCTTCAATCTATTTTACTGTAACTTCAGGAAGATAAGATTCGTCATAATTTGTAGCTTTAATCT
1 -GCTTCGATCCACTCCAATGTAATTTCAGG--GAGAAGA---G-----ATTTGTAGCTTCGATCT
** * * * * * * * *
82455071 GTTCCACTGTAACTCCAAGGAAATAAGATTCACTTTATTTAGTCTGCTCCGCTGCAACTTTAGGG
55 ACTCCGCTGGAACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGG
* * ** * * *
82455136 AGATAAGACTGGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCCACCAT
120 AGATAGGGCCAGTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCAT
82455196 CTTCAATCTA
Statistics
Matches: 634, Mismatches: 88, Indels: 25
0.85 0.12 0.03
Matches are distributed among these distances:
274 5 0.01
275 479 0.76
276 26 0.04
278 6 0.01
281 1 0.00
286 117 0.18
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (273 bp):
GCTTCGATCCACTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGA
ACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAGGGCCA
GTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATATTTGTACTTCAATCT
GTTCCACTGCAACTTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGCTCAGCTACAACTTCAGAG
AGATAGGGCTGGT
Found at i:82455031 original size:143 final size:143
Alignment explanation
Indices: 82454787--82455190 Score: 497
Period size: 143 Copynumber: 2.8 Consensus size: 143
82454777 TTCGATCTAC
* * * * * * *
82454787 TCCACTGAAACTTCAAGGAGATAAGAATCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGAGAG
1 TCCACTGCAACTCCAAGAAAATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTTAGAGAG
* ** * * *
82454852 ATAGGGCCAGTGGCTTTAATCTACTCCATTGCAACTTCAGGAAGATATGATCCG-CTATAATTTG
66 ATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCCGTC-ATAATTTG
*
82454916 TAACTTCAATTTGT
130 TAACTTCAATCTGT
* *
82454930 TCCACTGCAACT-CTAGAAAAATAAGATTCACTTTCTTCAGTCTGCTCTGCTGCAACTTTAGAGA
1 TCCACTGCAACTCCAAG-AAAATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTTAGAGA
* ** * *
82454994 GATAAGGCTGGTGGCTTCAATCTATTTTACTGTAACTTCAGGAAGATAAGATTCGTCATAATTTG
65 GATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCCGTCATAATTTG
* *
82455059 TAGCTTTAATCTGT
130 TAACTTCAATCTGT
* * * * *
82455073 TCCACTGTAACTCCAAGGAAATAAGATTCACTTTATTTAGTCTGCTCCGCTGCAACTTTAGGGAG
1 TCCACTGCAACTCCAAGAAAATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTTAGAGAG
* * *
82455138 ATAAGACTGGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCC
66 ATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCC
82455191 ACCATCTTCA
Statistics
Matches: 221, Mismatches: 37, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
142 3 0.01
143 214 0.97
144 4 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (143 bp):
TCCACTGCAACTCCAAGAAAATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTTAGAGAG
ATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCCGTCATAATTTGT
AACTTCAATCTGT
Found at i:82455471 original size:46 final size:45
Alignment explanation
Indices: 82455283--82455477 Score: 203
Period size: 46 Copynumber: 4.2 Consensus size: 45
82455273 AAAATTCGGT
* *
82455283 TTCTTCCATCCATCCCACTACAACTCAAAGGTATAGGATTTGTATC
1 TTCTTCAAT-CATCCCACTACAACTCAGAGGTATAGGATTTGTATC
* *
82455329 ATCTTCAATCCATCCCACTACAACTCAGAGGTATAGAATTTGTATC
1 TTCTTCAAT-CATCCCACTACAACTCAGAGGTATAGGATTTGTATC
** * *
82455375 TTCTTCAATCTATCCCACTGTAGCTCACG-GGTATAGGATTTGTATA
1 TTCTTCAATC-ATCCCACTACAACTCA-GAGGTATAGGATTTGTATC
* * * * * **
82455421 TTCTTTAATACATCCCACTGCAGCTCAGGGGTACAGGATTTGTGGC
1 TTCTTCAAT-CATCCCACTACAACTCAGAGGTATAGGATTTGTATC
82455467 TTCTTCAATCA
1 TTCTTCAATCA
82455478 ATTGGTCTCG
Statistics
Matches: 128, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
45 4 0.03
46 122 0.95
47 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (45 bp):
TTCTTCAATCATCCCACTACAACTCAGAGGTATAGGATTTGTATC
Found at i:82455960 original size:53 final size:52
Alignment explanation
Indices: 82455874--82455976 Score: 125
Period size: 53 Copynumber: 2.0 Consensus size: 52
82455864 GGAAGCATAG
* *
82455874 CTCGAAATAAATAAATTATCAAAGATTGCAAATGCAATAAGAAGAAAATTAA
1 CTCGAAATAAATAAATTATCAAAGATAGAAAATGCAATAAGAAGAAAATTAA
* * * * * *
82455926 CTCGAGATGAATAAGTTAATCAAAGATAGAAAATGTAATAATAAGGAAATT
1 CTCGAAATAAATAAATT-ATCAAAGATAGAAAATGCAATAAGAAGAAAATT
82455977 GATTGGGAGC
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
52 14 0.33
53 28 0.67
ACGTcount: A:0.53, C:0.08, G:0.15, T:0.24
Consensus pattern (52 bp):
CTCGAAATAAATAAATTATCAAAGATAGAAAATGCAATAAGAAGAAAATTAA
Found at i:82456306 original size:21 final size:21
Alignment explanation
Indices: 82456282--82456328 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
82456272 CCTTTGCGGG
82456282 TTTTTACCTTGGCTTTTCCTT
1 TTTTTACCTTGGCTTTTCCTT
* * **
82456303 TTTTTTCTTTTTCTTTTCCTT
1 TTTTTACCTTGGCTTTTCCTT
82456324 TTTTT
1 TTTTT
82456329 GTGTTTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.02, C:0.19, G:0.04, T:0.74
Consensus pattern (21 bp):
TTTTTACCTTGGCTTTTCCTT
Found at i:82469977 original size:28 final size:28
Alignment explanation
Indices: 82469945--82470014 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
82469935 AATGAGATTG
*
82469945 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
82469973 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
82470001 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82470015 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:82471663 original size:19 final size:19
Alignment explanation
Indices: 82471625--82471699 Score: 106
Period size: 19 Copynumber: 4.2 Consensus size: 19
82471615 AATCTTTAAG
82471625 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82471644 G--AT-C--TCTTAGATAT
1 GATATGCAATCTTAGATAT
82471658 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82471677 GATATGCAATCTTAAGATAT
1 GATATGCAATCTT-AGATAT
82471697 GAT
1 GAT
82471700 CTTGTAATCT
Statistics
Matches: 50, Mismatches: 0, Indels: 11
0.82 0.00 0.18
Matches are distributed among these distances:
14 11 0.22
16 3 0.06
17 3 0.06
19 24 0.48
20 9 0.18
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:82471677 original size:14 final size:14
Alignment explanation
Indices: 82471633--82471662 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82471623 AGGATATGCA
82471633 ATCTTAGATATGAT
1 ATCTTAGATATGAT
*
82471647 CTCTTAGATATGAT
1 ATCTTAGATATGAT
82471661 AT
1 AT
82471663 GCAATCTTAG
Statistics
Matches: 14, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (14 bp):
ATCTTAGATATGAT
Found at i:82477334 original size:18 final size:19
Alignment explanation
Indices: 82477308--82477353 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
82477298 TTCTATTTCA
*
82477308 AAAAAAAAAGG-AAAAAAG
1 AAAAGAAAAGGAAAAAAAG
*
82477326 AAAAGAAAAGGAAAAAAAT
1 AAAAGAAAAGGAAAAAAAG
82477345 AAAAGAAAA
1 AAAAGAAAA
82477354 AAATGGAGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (19 bp):
AAAAGAAAAGGAAAAAAAG
Found at i:82477343 original size:14 final size:13
Alignment explanation
Indices: 82477310--82477356 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
82477300 CTATTTCAAA
82477310 AAAAAAAGGAAAA-
1 AAAAAAA-GAAAAG
*
82477323 AAGAAAAGAAAAGG
1 AAAAAAAGAAAA-G
*
82477337 AAAAAAATAAAAG
1 AAAAAAAGAAAAG
82477350 AAAAAAA
1 AAAAAAA
82477357 TGGAGAGGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
12 5 0.17
13 14 0.48
14 10 0.34
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (13 bp):
AAAAAAAGAAAAG
Found at i:82478363 original size:43 final size:42
Alignment explanation
Indices: 82478315--82478622 Score: 205
Period size: 43 Copynumber: 7.3 Consensus size: 42
82478305 CGCCTTAATC
82478315 CCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTT-CAGATCTTATCT
* * * * * *
82478358 CCCTAAGTAGTAGTGG-AGCAGATCGAAGA-CTC-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTCAGATCTT-ATCT
82478399 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTT-CAGATCTTATCT
* * * * *
82478442 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CTC-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTCAGATCTT-ATCT
*
82478483 CCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTT-CAGATCTTATCT
* * * * *
82478526 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CTC-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTCAGATCTT-ATCT
*
82478567 CCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTT-CAGATCTTATCT
82478610 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
82478623 TGAAGCAGAT
Statistics
Matches: 199, Mismatches: 36, Indels: 60
0.67 0.12 0.20
Matches are distributed among these distances:
39 3 0.02
40 15 0.08
41 63 0.32
42 24 0.12
43 76 0.38
44 15 0.08
45 3 0.02
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (42 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTCAGATCTTATCT
Found at i:82478411 original size:41 final size:40
Alignment explanation
Indices: 82478358--82478663 Score: 164
Period size: 41 Copynumber: 7.3 Consensus size: 40
82478348 GATCTTATCT
*
82478358 CCCTAAGTAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 CCCTAAGCAGTAGTGGAGCAGAT-GAAGACTCGCCTTAATC
* * * * *
82478399 CCCTAAGCAGTAG-GGTAACAGGTTAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATGAAGA-CT-C-G-CCTTAATC
82478441 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGAT-GAAGACTCGCCTTAATC
* * * *
82478483 CCCTAAGCAGTAG-GGTAACA-AGTTAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGA-TGAAGA-CT-C-G-CCTTAATC
82478525 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGAT-GAAGACTCGCCTTAATC
* * * * * *
82478567 CCCTAAGCGGTAG-GGTAACAGGTTAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATGAAGA-CT-C-G-CCTTAATC
* *
82478609 TCCCTAAGCAGTAGTGAAGCAGATTGAAGACTCACCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGA-TGAAGACTCGCCTTAATC
*
82478651 CCCTAAGTAGTAG
1 CCCTAAGCAGTAG
82478664 GGTAACAGGT
Statistics
Matches: 199, Mismatches: 34, Indels: 64
0.67 0.11 0.22
Matches are distributed among these distances:
39 3 0.02
40 16 0.08
41 75 0.38
42 23 0.12
43 63 0.32
44 16 0.08
45 3 0.02
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (40 bp):
CCCTAAGCAGTAGTGGAGCAGATGAAGACTCGCCTTAATC
Found at i:82478446 original size:84 final size:84
Alignment explanation
Indices: 82478305--82478924 Score: 877
Period size: 84 Copynumber: 7.4 Consensus size: 84
82478295 CAAAATTCAG
* *
82478305 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
82478370 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
82478389 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
82478454 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
82478473 CGCCTTAATCCCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
82478538 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
82478557 CGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
82478622 GTGAAGCAGATTGAAGACT
66 GTGGAGCAGATCGAAGACT
* * * *
82478641 CACCTTAATCCCCTAAGTAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
82478701 GCGGAGTAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-GACT
* * * *
82478723 CACCTTAATCCCTTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGAAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
82478788 GTGGAGCAGATCAAAGA-T
66 GTGGAGCAGATCGAAGACT
* * *
82478806 CGCCTTAATCCCCTAAGTAGTAGGATAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
**
82478866 ACGGAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-GACT
* *
82478888 CGCCTTAA-CTCCCTAAGAAGTAGGGTAATAGGTTAAA
1 CGCCTTAATC-CCCTAAGCAGTAGGGTAACAGGTTAAA
82478925 GTATAGCAGA
Statistics
Matches: 481, Mismatches: 37, Indels: 33
0.87 0.07 0.06
Matches are distributed among these distances:
78 37 0.08
79 36 0.07
80 1 0.00
81 4 0.01
82 61 0.13
83 28 0.06
84 276 0.57
85 1 0.00
87 37 0.08
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:82479029 original size:44 final size:44
Alignment explanation
Indices: 82478981--82479602 Score: 545
Period size: 44 Copynumber: 14.2 Consensus size: 44
82478971 TATTTCAGCA
* * *
82478981 TGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGTAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
*
82479025 TGGCATCCCTGTGTTTATAGGGAAC-AGATCGAAGATAGCAAATT
1 TGGCATCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGCAGATT
* * * * **
82479069 TGACA-CTCCTGTGCTTACAGCGAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATC-CCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGCAG-ATT
*
82479113 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
* * *
82479157 TGGCATCCTTGTGTTTATAGGGAACAAATCGAAGATAGAAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
** * * * * **
82479201 TAACA-CTCCTGTGATTACAGTGAAACAAATCGAAGATTTCAGCA--
1 TGGCATC-CCTGTGTTTATAG-GGAACAAGTCGAAGATAGCAG-ATT
*
82479245 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
* * * * *
82479289 TGGCATCCTTGTGCTTATAGGGAACAAATCAAAGATAGCAGATC
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
* * * * * * ** *
82479333 TGACATTCTTGTGATTACAGCGAA-ACAGATCGAAGATTTCAACATT
1 TGGCATCCCTGTGTTTATAGGGAACA-AG-TCGAAGATAGC-AGATT
*
82479379 T--CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
* * * *
82479421 TGGCATCCCTGTGTTTATAAGGAACAAATCAAAGATAGCAGATC
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
* * * ** **
82479465 TGGCATTCCTATGCTTATAGCAAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGCAG-ATT
82479509 TGGCATCCCTGTGTTTATAGGGAACAAGT-GAAGATAGCAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
* * *
82479552 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAACAGATC
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
82479596 TGGCATC
1 TGGCATC
82479603 TCCATTTCGA
Statistics
Matches: 460, Mismatches: 91, Indels: 54
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.00
42 16 0.03
43 70 0.15
44 313 0.68
45 53 0.12
46 7 0.02
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (44 bp):
TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATT
Found at i:82479164 original size:132 final size:132
Alignment explanation
Indices: 82478951--82479597 Score: 947
Period size: 132 Copynumber: 4.9 Consensus size: 132
82478941 CTTCATATGT
* * * * *
82478951 TTACATCGAAGCGGATTGAATATTTCAGCATGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGA
1 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
* * *
82479016 TAGTAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAAATTTGACACTCCTGT
66 TAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAAATCTGACACTCCTGT
*
82479081 GC
131 GA
82479083 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
1 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
* * *
82479148 TAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAAATCGAAGATAG-AAGATTTAACACTCCTG
66 TAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAA-ATCTGACACTCCTG
82479212 TGA
130 TGA
* * *
82479215 TTACAGTGAAACAAATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
1 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
* * * * * *
82479280 TAGCAGATTTGGCATCCTTGTGCTTATAGGGAACAAATCAAAGATAGCAGATCTGACATTCTTGT
66 TAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAAATCTGACACTCCTGT
82479345 GA
131 GA
* * **
82479347 TTACAGCGAAACAGATCGAAGATTTCAACATTTCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
1 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
* * * * * *
82479412 TAGCAGATTTGGCATCCCTGTGTTTATAAGGAACAAATCAAAGATAGCAGATCTGGCATTCCTAT
66 TAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAAATCTGACACTCCTGT
*
82479477 GC
131 GA
* *
82479479 TTATAGCAAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAG-TGAAGA
1 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
* *
82479543 TAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAACAGATCTG
66 TAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAAATCTG
82479598 GCATCTCCAT
Statistics
Matches: 472, Mismatches: 41, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
131 60 0.13
132 411 0.87
133 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (132 bp):
TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
TAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAAATCTGACACTCCTGT
GA
Found at i:82480215 original size:16 final size:17
Alignment explanation
Indices: 82480165--82480215 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
82480155 ATGGAAATAT
*
82480165 AATCTTTAAGGATATGC
1 AATCTTGAAGGATATGC
*
82480182 AATCTTAGATATGATATGC
1 AATCTT-GA-AGGATATGC
82480201 AATCTTGAA-GATATG
1 AATCTTGAAGGATATG
82480216 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 14 0.47
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (17 bp):
AATCTTGAAGGATATGC
Found at i:82480234 original size:22 final size:21
Alignment explanation
Indices: 82480175--82480217 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
82480165 AATCTTTAAG
82480175 GATATGCAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
82480194 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTTGAAGATAT
82480215 GAT
1 GAT
82480218 TTTGTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
21 9 0.41
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (21 bp):
GATATGCAATCTTGAAGATAT
Found at i:82482728 original size:19 final size:19
Alignment explanation
Indices: 82482684--82482724 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
82482674 AACAATTTAT
82482684 AAATAGATAAATAATAAGTA
1 AAATA-ATAAATAATAAGTA
*
82482704 AAATAATAAATGATAA-TA
1 AAATAATAAATAATAAGTA
82482722 AAA
1 AAA
82482725 ATAAATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 10 0.50
20 5 0.25
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.24
Consensus pattern (19 bp):
AAATAATAAATAATAAGTA
Found at i:82483011 original size:5 final size:5
Alignment explanation
Indices: 82483001--82483030 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
82482991 GAGTAATGAT
*
82483001 ATAAA ATAAA ATATA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
82483031 TGTGCTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
ATAAA
Found at i:82483105 original size:3 final size:3
Alignment explanation
Indices: 82483099--82483224 Score: 110
Period size: 3 Copynumber: 42.3 Consensus size: 3
82483089 CAAAAAAAAT
* * * * * * *
82483099 ATA ATA ATG ATA ATA ATA ATA GTA ATA ACA AAA ACA GTA ATA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
82483147 GTA ATA AAA ATA ATA GTA ATA GTA ATA ATA AAA ATA ATA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
82483194 ATA GTA ATA ATA ATA TTA ATA ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
82483225 AATTAATTAA
Statistics
Matches: 94, Mismatches: 28, Indels: 2
0.76 0.23 0.02
Matches are distributed among these distances:
2 2 0.02
3 92 0.98
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:82485573 original size:22 final size:21
Alignment explanation
Indices: 82485548--82485592 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
82485538 TGGCTAATGA
*
82485548 AAAAAAGTGAATAGAAAATTAT
1 AAAAAAGTAAATAG-AAATTAT
**
82485570 AAAAATTTAAATAGAAATTAT
1 AAAAAAGTAAATAGAAATTAT
82485591 AA
1 AA
82485593 CTTTTTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (21 bp):
AAAAAAGTAAATAGAAATTAT
Found at i:82486988 original size:16 final size:15
Alignment explanation
Indices: 82486967--82487002 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
82486957 GAAGCAGCTG
*
82486967 GAAAAGAAAGAGAAGA
1 GAAAAGAAAAAG-AGA
82486983 GAAAAGAAAAAGAGA
1 GAAAAGAAAAAGAGA
82486998 GAAAA
1 GAAAA
82487003 TTTTGCATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (15 bp):
GAAAAGAAAAAGAGA
Found at i:82489447 original size:34 final size:34
Alignment explanation
Indices: 82489396--82489463 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
82489386 AAAATGAGAG
* * **
82489396 ATTATCTCTTAAGACTTCTTTGAAACATCCCACT
1 ATTATCTCCTAAAACTTCTTAAAAACATCCCACT
*
82489430 ATTATCTCCTAAAACTTCTTAAAAACGTCCCACT
1 ATTATCTCCTAAAACTTCTTAAAAACATCCCACT
82489464 CACTTCCCTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.32, C:0.28, G:0.04, T:0.35
Consensus pattern (34 bp):
ATTATCTCCTAAAACTTCTTAAAAACATCCCACT
Found at i:82490892 original size:24 final size:24
Alignment explanation
Indices: 82490865--82490921 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
82490855 TGTATCTGGT
*
82490865 TATGAAAATACATCTGAATTTGTA
1 TATGAAAATACATCTGAATCTGTA
* ** *
82490889 TATGATAATATGTTTGAATCTGTA
1 TATGAAAATACATCTGAATCTGTA
*
82490913 TCTGAAAAT
1 TATGAAAAT
82490922 GTATCTGTTT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (24 bp):
TATGAAAATACATCTGAATCTGTA
Found at i:82492938 original size:20 final size:19
Alignment explanation
Indices: 82492887--82492939 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
82492877 ACTTGCTTAA
* *
82492887 AAACAATTTTAACATGATTG
1 AAAC-ATTTTAACTTAATTG
82492907 AAA-ATGTTTAACTTAATTG
1 AAACAT-TTTAACTTAATTG
82492926 AAACCATTTTAACT
1 AAA-CATTTTAACT
82492940 AGATTTTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 2 0.07
19 14 0.50
20 10 0.36
21 2 0.07
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (19 bp):
AAACATTTTAACTTAATTG
Found at i:82493254 original size:24 final size:24
Alignment explanation
Indices: 82493222--82493269 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
82493212 AGAAAAATGG
82493222 GTCGTAGTCACAAATGCATGCGTT
1 GTCGTAGTCACAAATGCATGCGTT
82493246 GTCGTAGTCACAAATGCATGCGTT
1 GTCGTAGTCACAAATGCATGCGTT
82493270 TTCTCACTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (24 bp):
GTCGTAGTCACAAATGCATGCGTT
Found at i:82494481 original size:34 final size:34
Alignment explanation
Indices: 82494443--82494511 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
82494433 TAACATTCTT
82494443 TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
1 TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
*
82494477 TTATTTTATTTTAAGTAATTTAATTATGTTTAAA
1 TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
82494511 T
1 T
82494512 GAAGAAATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (34 bp):
TTATTTTATTTTAAGCAATTTAATTATGTTTAAA
Found at i:82499984 original size:134 final size:131
Alignment explanation
Indices: 82499692--82500027 Score: 460
Period size: 134 Copynumber: 2.5 Consensus size: 131
82499682 TTCAGCCTAC
* *
82499692 AAATCTGCTTCACTGCAATTTCAGGAAGACTAG-TTCT-CCGTCTTCGATCTGTTCCACTGCAAC
1 AAATCTGCTTCACTGCAACTTCAGGAAGACTAGATT-TGCCGTCTTCGATCTGCTCCACTGCAAC
* * * *
82499755 TTCAGGGAAACAAGATCTACAATTTTAGCCTACTCCACTACAACTTTAGGGGCTAGGTTGGTGGC
65 TTCAGGGAAACAAGATCTACAATTTCAGCCTACTCCACCACAACTTTAGGGGATAGGATGGTGGC
82499820 TT
130 TT
* * * * ** *
82499822 AAATCTGCTTCACTACAACTTCAAGAAGATTGGATTTGCTATCTTTGATCTGCTCCACTGCAACT
1 AAATCTGCTTCACTGCAACTTCAGGAAGACTAGATTTGCCGTCTTCGATCTGCTCCACTGCAACT
* *
82499887 TCAGGGAAACAAGATCTGTAGAATTTCAGCCTACTCCACCACAATTTTAGGGAGATAGGATGGTG
66 TCAGGGAAACAAGATC--TACAATTTCAGCCTACTCCACCACAACTTTAGGG-GATAGGATGGTG
82499952 GCTT
128 GCTT
* * *
82499956 AAATCTGCTTCACTGTAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACT
1 AAATCTGCTTCACTGCAACTTCAGGAAGACTAGATTTGCCGTCTTCGATCTGCTCCACTGCAACT
82500021 TCAGGGA
66 TCAGGGA
82500028 GATAGGATGG
Statistics
Matches: 176, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
130 29 0.16
131 41 0.23
133 30 0.17
134 76 0.43
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (131 bp):
AAATCTGCTTCACTGCAACTTCAGGAAGACTAGATTTGCCGTCTTCGATCTGCTCCACTGCAACT
TCAGGGAAACAAGATCTACAATTTCAGCCTACTCCACCACAACTTTAGGGGATAGGATGGTGGCT
T
Found at i:82500939 original size:6 final size:7
Alignment explanation
Indices: 82500922--82500948 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
82500912 CCTCTCCATT
82500922 TTTTTTA
1 TTTTTTA
82500929 TTTTTTA
1 TTTTTTA
82500936 TTTTTTA
1 TTTTTTA
82500943 TTTTTT
1 TTTTTT
82500949 TTGAAAGAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:82502428 original size:27 final size:27
Alignment explanation
Indices: 82502374--82502428 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
82502364 ATTATACTAT
*
82502374 AATTATAAAATAATTAAATTGTACTTA
1 AATTATAAAATAATTAAATTGTAATTA
* *
82502401 AATTATTAAAAT-ATTGAATTTTAATTA
1 AATTA-TAAAATAATTAAATTGTAATTA
82502428 A
1 A
82502429 TTTTGATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (27 bp):
AATTATAAAATAATTAAATTGTAATTA
Found at i:82503840 original size:36 final size:36
Alignment explanation
Indices: 82503793--82503864 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
82503783 CACAGAGAAT
82503793 GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
1 GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
*
82503829 GGGTTTAATTGCGTAAAGTCATTTCAATTTCTTAAC
1 GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
82503865 TCATATAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (36 bp):
GGGTTTAATTGCATAAAGTCATTTCAATTTCTTAAC
Found at i:82503874 original size:36 final size:36
Alignment explanation
Indices: 82503798--82503874 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
82503788 AGAATGGGTT
** *
82503798 TAATTGCATAAAGTCATTTCAATTTCTTAACGGGTT
1 TAATTGCATAAAGTCATTTCAATTTCTTAACGCATA
* *
82503834 TAATTGCGTAAAGTCATTTCAATTTCTTAACTCATA
1 TAATTGCATAAAGTCATTTCAATTTCTTAACGCATA
82503870 TAATT
1 TAATT
82503875 TATATTCATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.43
Consensus pattern (36 bp):
TAATTGCATAAAGTCATTTCAATTTCTTAACGCATA
Found at i:82504376 original size:6 final size:6
Alignment explanation
Indices: 82504318--82504384 Score: 80
Period size: 6 Copynumber: 11.0 Consensus size: 6
82504308 ATATACACTG
* * * *
82504318 TCAGAT ACAGAT ACAGAT ACAGAT TCAGTT TCAGAT TCAGAT TCAGAT
1 TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT
*
82504366 ATCAGAT TCAGTT TCAGAT
1 -TCAGAT TCAGAT TCAGAT
82504385 ATACAGAATC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
6 48 0.89
7 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (6 bp):
TCAGAT
Found at i:82507335 original size:39 final size:39
Alignment explanation
Indices: 82507292--82507401 Score: 139
Period size: 39 Copynumber: 2.8 Consensus size: 39
82507282 ACATATTTCT
* ** * *
82507292 AGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCC
1 AGCACATAGCCTGCAGACCTTAAGTCCGGATATAATTCC
*
82507331 AGCACATAGCCTGCAGACCTTAAGTCCTGATATAATTCC
1 AGCACATAGCCTGCAGACCTTAAGTCCGGATATAATTCC
* * *
82507370 AGCACATAGCCTGCGGACCCTAAGTCTGGATA
1 AGCACATAGCCTGCAGACCTTAAGTCCGGATA
82507402 AACATCACTG
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 61 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (39 bp):
AGCACATAGCCTGCAGACCTTAAGTCCGGATATAATTCC
Found at i:82507599 original size:39 final size:39
Alignment explanation
Indices: 82507545--82507658 Score: 165
Period size: 39 Copynumber: 2.9 Consensus size: 39
82507535 ACAGACATAT
* * * *
82507545 TTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
* *
82507584 TTCCAGCACATAGCCTGCAGACCTTAAGTCCTGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
*
82507623 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATA
82507659 AACATCACTG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 66 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
Found at i:82507735 original size:257 final size:257
Alignment explanation
Indices: 82507279--82507800 Score: 1008
Period size: 257 Copynumber: 2.0 Consensus size: 257
82507269 GACTTTAGCC
*
82507279 CAGACATATTTCTAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
1 CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
*
82507344 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATAAACATCA
66 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
82507409 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
131 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
82507474 ATTTATTCCATTCAAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
196 ATTTATTCCATTCAAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
82507536 CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
1 CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
82507601 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
66 CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
82507666 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
131 CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
*
82507731 ATTTATTCCATTCGAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
196 ATTTATTCCATTCAAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
*
82507793 CATACATA
1 CAGACATA
82507801 AGAATATATG
Statistics
Matches: 261, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
257 261 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.29
Consensus pattern (257 bp):
CAGACATATTTCCAGCACGTAGCCTGTGGATCTTAAGTCCGGTTATAATTCCAGCACATAGCCTG
CAGACCTTAAGTCCTGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAAACATCA
CTGAATGTCATACATACTTATTCGCAAGAAAATTCAATTCACATAACATCTCACAATCATAGTTC
ATTTATTCCATTCAAATAATAGCATAACATGGGCACCATTCATATAACTTTTGGCTCAATAA
Found at i:82513920 original size:46 final size:46
Alignment explanation
Indices: 82513868--82514097 Score: 334
Period size: 46 Copynumber: 5.0 Consensus size: 46
82513858 GTGTGCTCTC
* *
82513868 TGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* *
82513914 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * *
82513960 TGATATGAAATGAATAAGATCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* *
82514006 TGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*** *
82514052 TGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
82514098 AGAAAACGAG
Statistics
Matches: 169, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
46 132 0.78
47 37 0.22
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:82533890 original size:45 final size:43
Alignment explanation
Indices: 82533828--82533912 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 43
82533818 TGGTGTAAGC
*
82533828 CAGTGTAAGACATGTCTGGGACAT-GCATCGGCTACATGATGTGT
1 CAGTATAAGACATGTCTGGGACATGGCATCGG-TACA-GATGTGT
82533872 CAGTATAAGACCATGTCTGGGACATGGCATCGGTACAGATG
1 CAGTATAAGA-CATGTCTGGGACATGGCATCGGTACAGATG
82533913 CGTGGCGTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
44 13 0.34
45 18 0.47
46 7 0.18
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (43 bp):
CAGTATAAGACATGTCTGGGACATGGCATCGGTACAGATGTGT
Found at i:82533934 original size:49 final size:46
Alignment explanation
Indices: 82533690--82533950 Score: 159
Period size: 46 Copynumber: 5.6 Consensus size: 46
82533680 TTGTGTGCTT
* * * *
82533690 GTGTAAGA-CATGTCTGGGACAT-GCATCAGTCACACTATGA-GAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-GGC-TAC-ATGATGTGTCA
* * *
82533736 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA-GAG-CTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC--T-ACATGATGTGTC-A
* * * * * *
82533784 GTGTAAGA-CATGTTTGGGGCAT-GCATCAGCCT-CTTGGTGTAAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-GGCTACATGATGT--GTCA
82533830 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACATGATGTGTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCTACATGATGTGTCA
*
82533874 GTATAAGACCATGTCTGGGACATGGCATCGG-TACA-GATGCGTGGCGTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCTACATGAT--GT---GTCA
* *
82533923 GTGTAAGACCATGCCTGGGAAATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
82533951 TGGCATTATA
Statistics
Matches: 174, Mismatches: 23, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 14 0.08
45 22 0.13
46 55 0.32
47 32 0.18
48 20 0.11
49 30 0.17
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (46 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCTACATGATGTGTCA
Found at i:82543129 original size:49 final size:49
Alignment explanation
Indices: 82543062--82543305 Score: 256
Period size: 49 Copynumber: 4.9 Consensus size: 49
82543052 AGCCAAAGCT
*
82543062 ATCTGGTACGCGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * *
82543111 ATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AACA
** * *
82543161 ATCTAATACACGTAGTACCCTGCACTTAGTACTACACACGTGATC-ACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * * * * * **
82543209 GTTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATT
1 ---ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * * **
82543261 ATCTGGTACACATGGTAGCCTGCAGTTAGTACTACATGCGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
82543306 TCACAATAGC
Statistics
Matches: 161, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
48 2 0.01
49 79 0.49
50 44 0.27
51 35 0.22
52 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
Found at i:82543303 original size:100 final size:101
Alignment explanation
Indices: 82543074--82543296 Score: 247
Period size: 101 Copynumber: 2.2 Consensus size: 101
82543064 CTGGTACGCG
* * * ** * *
82543074 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACA---ATCTAGTACACGTAGTAGCCTGCAC
1 TAGTACCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
* * *
82543136 TTAGTACTACACACGTGACCTCACCATCTAATACACG
65 TTAGTACTACACACGCGACCTAACCATCTAATACACA
82543173 TAGTACCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
1 TAGTACCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
* ** **
82543238 TAGTACTACACATGCGACC-AATTATCTGGTACACA
66 TAGTACTACACACGCGACCTAACCATCTAATACACA
* * *
82543273 TGGTAGCCTGCAGTTAGTACTACA
1 TAGTACCCTGCACTTAGTACTACA
82543297 TGCGTGACCT
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
98 3 0.03
99 31 0.30
100 31 0.30
101 38 0.37
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (101 bp):
TAGTACCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
TAGTACTACACACGCGACCTAACCATCTAATACACA
Found at i:82552706 original size:91 final size:91
Alignment explanation
Indices: 82552596--82552774 Score: 223
Period size: 91 Copynumber: 2.0 Consensus size: 91
82552586 GTTGTTACAA
* * *** * * *
82552596 GTTAATACACTGTCAGTAGGTTGAGAATGCACAATGGGTTTGCAAATAAAAGTTGACATTAAATT
1 GTTAATACACTATCAGTAGGTTGAGAATACACAACAAGTTTACAAATAAAAGCTGACAGTAAATT
**
82552661 TGTGGATAAACCACTTGTGTTTGTAG
66 TGTGGATAAACCACCAGTGTTTGTAG
* * * * *
82552687 GTTAATACGCTATCAGTAGGTTGTGAATATACAACAAGTTTACAGATAAAAGCTGACAGTAGATT
1 GTTAATACACTATCAGTAGGTTGAGAATACACAACAAGTTTACAAATAAAAGCTGACAGTAAATT
82552752 TGTGGATAAACCACCAGTGTTTG
66 TGTGGATAAACCACCAGTGTTTG
82552775 CAGATAAACT
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
91 73 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (91 bp):
GTTAATACACTATCAGTAGGTTGAGAATACACAACAAGTTTACAAATAAAAGCTGACAGTAAATT
TGTGGATAAACCACCAGTGTTTGTAG
Found at i:82552780 original size:46 final size:46
Alignment explanation
Indices: 82552633--82552782 Score: 110
Period size: 46 Copynumber: 3.3 Consensus size: 46
82552623 TGCACAATGG
* * * * **
82552633 GTTTGCAAATAAAAGTTGACATTAAATTTGTGGATAAACCACTTGT
1 GTTTGCAGATAAAAGCTGACAGTAGATTTGTGGATAAACCACCAGT
* * * * * * * *
82552679 GTTTGTAGGTTAATACGCT-ATCAGTAG-GTTGTGAATATA-CAACA-A
1 GTTTGCA-GATAA-AAGCTGA-CAGTAGATTTGTGGATAAACCACCAGT
*
82552724 GTTTACAGATAAAAGCTGACAGTAGATTTGTGGATAAACCACCAGT
1 GTTTGCAGATAAAAGCTGACAGTAGATTTGTGGATAAACCACCAGT
82552770 GTTTGCAGATAAA
1 GTTTGCAGATAAA
82552783 CTACCAATAC
Statistics
Matches: 73, Mismatches: 24, Indels: 14
0.66 0.22 0.13
Matches are distributed among these distances:
43 10 0.14
44 14 0.19
45 9 0.12
46 20 0.27
47 13 0.18
48 7 0.10
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (46 bp):
GTTTGCAGATAAAAGCTGACAGTAGATTTGTGGATAAACCACCAGT
Found at i:82553151 original size:20 final size:20
Alignment explanation
Indices: 82553128--82553166 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
82553118 ATATGGGCTT
82553128 GTGTTTGAGGTCTTGGGTTA
1 GTGTTTGAGGTCTTGGGTTA
82553148 GTGTTTGAGGTCTTGGGTT
1 GTGTTTGAGGTCTTGGGTT
82553167 CAACTCCCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.08, C:0.05, G:0.41, T:0.46
Consensus pattern (20 bp):
GTGTTTGAGGTCTTGGGTTA
Found at i:82554899 original size:39 final size:39
Alignment explanation
Indices: 82554856--82554933 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
82554846 TGAGCTTACC
82554856 CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
1 CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
82554895 CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
1 CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
82554934 ATTGATTACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (39 bp):
CTCTCCTTCTCGTCTATATTCATATTCCAAAATATCAAA
Found at i:82555145 original size:18 final size:18
Alignment explanation
Indices: 82555124--82555170 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 18
82555114 TTTTAAATAT
82555124 AATTACTTTTAACAAAAA
1 AATTACTTTTAACAAAAA
*
82555142 AATTTATATTTTAACAAAAA
1 AA-TTA-CTTTTAACAAAAA
82555162 AA-TACTTTT
1 AATTACTTTT
82555171 TTCACTTCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 4 0.16
18 4 0.16
19 3 0.12
20 14 0.56
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (18 bp):
AATTACTTTTAACAAAAA
Found at i:82557090 original size:104 final size:104
Alignment explanation
Indices: 82556910--82557176 Score: 455
Period size: 104 Copynumber: 2.6 Consensus size: 104
82556900 TTGTATATAA
** *
82556910 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
82556974 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
82557014 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
82557079 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
82557118 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
82557177 ATAACGGTTA
Statistics
Matches: 154, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
104 153 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:82564036 original size:26 final size:26
Alignment explanation
Indices: 82564001--82564051 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
82563991 ATGTGAAAAG
*
82564001 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
82564027 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
82564052 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:82564057 original size:104 final size:104
Alignment explanation
Indices: 82563922--82564188 Score: 439
Period size: 104 Copynumber: 2.6 Consensus size: 104
82563912 TTGTATATAA
** *
82563922 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
82563987 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATT-CCCCG
66 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
82564026 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
82564090 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
82564130 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
82564189 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
103 24 0.16
104 127 0.84
105 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:82576400 original size:54 final size:53
Alignment explanation
Indices: 82576342--82576463 Score: 190
Period size: 54 Copynumber: 2.3 Consensus size: 53
82576332 ACTGGCTTAA
* * *
82576342 TTCACATGCCCGTGTGTCAACCCGTGTGCTAGCCCATGTGACTCACTGACTTGG
1 TTCACACGCCCGTGTGTCAACCAGTGTGCTAGCCC-TGTGACTCACTAACTTGG
**
82576396 TTCACACGCCTATGTGTCAACCAGTGTGCTAGCCCTGTGACTCACTAACTTGG
1 TTCACACGCCCGTGTGTCAACCAGTGTGCTAGCCCTGTGACTCACTAACTTGG
82576449 TTCACACGCCCGTGT
1 TTCACACGCCCGTGT
82576464 CCCAGGCTGT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
53 30 0.49
54 31 0.51
ACGTcount: A:0.18, C:0.32, G:0.22, T:0.28
Consensus pattern (53 bp):
TTCACACGCCCGTGTGTCAACCAGTGTGCTAGCCCTGTGACTCACTAACTTGG
Found at i:82576455 original size:53 final size:54
Alignment explanation
Indices: 82576354--82576458 Score: 185
Period size: 53 Copynumber: 2.0 Consensus size: 54
82576344 CACATGCCCG
* *
82576354 TGTGTCAACCCGTGTGCTAGCCCATGTGACTCACTGACTTGGTTCACACGCCTA
1 TGTGTCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGGTTCACACGCCTA
82576408 TGTGTCAACCAGTGTGCTAGCCC-TGTGACTCACTAACTTGGTTCACACGCC
1 TGTGTCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGGTTCACACGCC
82576459 CGTGTCCCAG
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
53 27 0.55
54 22 0.45
ACGTcount: A:0.19, C:0.31, G:0.22, T:0.28
Consensus pattern (54 bp):
TGTGTCAACCAGTGTGCTAGCCCATGTGACTCACTAACTTGGTTCACACGCCTA
Found at i:82585302 original size:30 final size:30
Alignment explanation
Indices: 82585266--82585326 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
82585256 CAAATATTCC
82585266 TAGATAGTGTGATTTCTCGTGTCGATCCGA
1 TAGATAGTGTGATTTCTCGTGTCGATCCGA
82585296 TAGATAGTGTGATTTCTCGTGTCGATCCGA
1 TAGATAGTGTGATTTCTCGTGTCGATCCGA
82585326 T
1 T
82585327 CTTCCAAGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.16, G:0.26, T:0.38
Consensus pattern (30 bp):
TAGATAGTGTGATTTCTCGTGTCGATCCGA
Found at i:82585688 original size:36 final size:36
Alignment explanation
Indices: 82585560--82585981 Score: 382
Period size: 36 Copynumber: 11.4 Consensus size: 36
82585550 GAAAATCTTA
* * *
82585560 TTTAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGC
1 TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGC-A-C
* * *
82585598 ATTTAGTATAATCAGTCGATATTGCTCGTTTGAGAAAC
1 -TTTAGTAGAATCAGTAGATATTGCTCGTTTGAG-CAC
* * ** *
82585636 TATGCAGTAGAATCAATAGATATCACTTGTTTGAGCAC
1 T-T-TAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* ** * * *
82585674 TTTAGTAGAATCAATTTACATTGTTCATTTGAGCAC
1 TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* * *
82585710 ATTCAGTAGGATCAGTAGATATTGCTTG-TTGAGCAC
1 -TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* *
82585746 TTTCAGTAGGATCAGTAGATATTGCTTG-TTGAGCAC
1 TTT-AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
*
82585782 TTTCAGTAGAATCAATAGATATTGCTCGTTTGAGCAC
1 TTT-AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* * * * *
82585819 TTCAGTAGAATCAGTAGACATTACTCATTTCAGCAC
1 TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* * * *
82585855 ATTCAATAGGATTAGTAGATATTGCTCG-TTGAGCAC
1 -TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
*
82585891 TTTCAGTAGAATTAGTAGATATTGCTCGTTTGAGCAC
1 TTT-AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* *
82585928 TTTTAGTAGAATCAGTAGACATTACTCGTTTGAGCAC
1 -TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
*
82585965 TTTCAATAGAATCAGTA
1 TTT-AGTAGAATCAGTA
82585982 TTCTTTTCTT
Statistics
Matches: 319, Mismatches: 53, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
35 4 0.01
36 150 0.47
37 101 0.32
38 8 0.03
39 56 0.18
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (36 bp):
TTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
Found at i:82585790 original size:109 final size:109
Alignment explanation
Indices: 82585576--82585981 Score: 438
Period size: 109 Copynumber: 3.7 Consensus size: 109
82585566 ATAATCAGTG
* * * * * * * *
82585576 GATAATGCTCGTTTGAGCAAGCATTTAGTATAATCAGTCGATATTGCTCGTTTGAGAAACTATGC
1 GATATTGCTCGTTTGAGC-A-C-TTCAGTAGAATCAGTAGACATTACTCGTTTGAG-CACT-TTC
* * ** *
82585641 AGTAGAATCAATAGATATCACTTGTTTGAGCACTTT-AGTAGAATCAATT
61 AATAGAATCAGTAGATATTGCTTG-TTGAGCACTTTCAGTAGAATCAATA
* * * * * * * * *
82585690 TACATTGTTCATTTGAGCACATTCAGTAGGATCAGTAGATATTGCTTG-TTGAGCACTTTCAGTA
1 GATATTGCTCGTTTGAGCAC-TTCAGTAGAATCAGTAGACATTACTCGTTTGAGCACTTTCAATA
*
82585754 GGATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAGAATCAATA
65 GAATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAGAATCAATA
* * *
82585799 GATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGACATTACTCATTTCAGCACATTCAATAG
1 GATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGACATTACTCGTTTGAGCACTTTCAATAG
* * * * *
82585864 GATTAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATTAGTA
66 AATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAGAATCAATA
*
82585908 GATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTAGACATTACTCGTTTGAGCACTTTCAATA
1 GATATTGCTCGTTTGAGCAC-TTCAGTAGAATCAGTAGACATTACTCGTTTGAGCACTTTCAATA
82585973 GAATCAGTA
65 GAATCAGTA
82585982 TTCTTTTCTT
Statistics
Matches: 250, Mismatches: 39, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
108 33 0.13
109 124 0.50
110 50 0.20
111 5 0.02
112 24 0.10
113 1 0.00
114 13 0.05
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (109 bp):
GATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGACATTACTCGTTTGAGCACTTTCAATAG
AATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAGAATCAATA
Found at i:82585802 original size:145 final size:146
Alignment explanation
Indices: 82585569--82585978 Score: 509
Period size: 145 Copynumber: 2.8 Consensus size: 146
82585559 ATTTAGTATA
* * * *
82585569 ATCAGTGGATAATGCTCGTTTGAGCAAGCATTT-AGTATAATCAGTCGATATTGCTCGTTTGAGA
1 ATCAGTAGATATTGCTCG-TTGAGC-A-C-TTTCAGTAGAATCAGTAGATATTGCTCGTTTGAG-
* * * * ** **
82585633 AACTATGCAGTAGAATCAATAGATATCACTTGTTTGAGCACTTTAGTAGAATCAATTTACATTGT
61 CACT-TTCAGTAGAATCAATAGATATTACTCGTTTGAGCACTTTAGTAGAATCAATAGACATTAC
* *
82585698 TCATTTGAGCACATTCAGTAGG
125 TCATTTCAGCACATTCAATAGG
* * *
82585720 ATCAGTAGATATTGCTTGTTGAGCACTTTCAGTAGGATCAGTAGATATTGCTTG-TTGAGCACTT
1 ATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTT
* * *
82585784 TCAGTAGAATCAATAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGACATTACTCATTT
66 TCAGTAGAATCAATAGATATTACTCGTTTGAGCACTTTAGTAGAATCAATAGACATTACTCATTT
82585849 CAGCACATTCAATAGG
131 CAGCACATTCAATAGG
* *
82585865 ATTAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATTAGTAGATATTGCTCGTTTGAGCACTT
1 ATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTT
* * * *
82585930 TTAGTAGAATCAGTAGACATTACTCGTTTGAGCACTTTCAATAGAATCA
66 TCAGTAGAATCAATAGATATTACTCGTTTGAGCACTTT-AGTAGAATCA
82585979 GTATTCTTTT
Statistics
Matches: 225, Mismatches: 31, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
145 119 0.53
146 46 0.20
147 17 0.08
148 21 0.09
149 1 0.00
150 6 0.03
151 15 0.07
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (146 bp):
ATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTT
TCAGTAGAATCAATAGATATTACTCGTTTGAGCACTTTAGTAGAATCAATAGACATTACTCATTT
CAGCACATTCAATAGG
Found at i:82586984 original size:17 final size:17
Alignment explanation
Indices: 82586951--82586984 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
82586941 AACTTACTTT
*
82586951 TTAACTTTTTTACAAAA
1 TTAACTTTTTAACAAAA
*
82586968 TTAACTTTTTAATAAAA
1 TTAACTTTTTAACAAAA
82586985 ATTATAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAACTTTTTAACAAAA
Found at i:82592307 original size:29 final size:29
Alignment explanation
Indices: 82592249--82592308 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
82592239 TTTATTTCAT
*
82592249 AATTTAATCCCTCAATTTACACTTTTCTC
1 AATTTAATCCCTCAATATACACTTTTCTC
* *
82592278 AATTTAATCCCT-AATATGCATTTTTACTC
1 AATTTAATCCCTCAATATACACTTTT-CTC
82592307 AA
1 AA
82592309 AATCACTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.32, C:0.23, G:0.02, T:0.43
Consensus pattern (29 bp):
AATTTAATCCCTCAATATACACTTTTCTC
Found at i:82614272 original size:46 final size:46
Alignment explanation
Indices: 82614209--82614436 Score: 298
Period size: 46 Copynumber: 4.9 Consensus size: 46
82614199 TTCGACATGA
* * * * * *
82614209 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
* ** * **
82614255 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-TCTATCAGGT
82614302 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAGGT
*
82614348 TGCCATGGTATCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAGGT
82614394 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCA
82614437 TAGAGCACAC
Statistics
Matches: 163, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
45 1 0.01
46 121 0.74
47 41 0.25
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
Found at i:82614368 original size:93 final size:91
Alignment explanation
Indices: 82614209--82614436 Score: 303
Period size: 93 Copynumber: 2.5 Consensus size: 91
82614199 TTCGACATGA
* * * * * *
82614209 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCATTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGTTGCCATGGTATCATTCAAC
** * *
82614274 CATGGTCTTATTCATTTCCCCGTCAGGT
65 CATGGTCTTACACATTT-CACATCAGGT
*
82614302 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGTTGCCATGGTATCATTCAAC
* *
82614367 CATGGTCTTACACGTTTCATATCAGGT
65 CATGGTCTTACACATTTCACATCAGGT
82614394 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCA
82614437 TAGAGCACAC
Statistics
Matches: 120, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
92 49 0.41
93 71 0.59
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGTTGCCATGGTATCATTCAACC
ATGGTCTTACACATTTCACATCAGGT
Found at i:82616414 original size:21 final size:21
Alignment explanation
Indices: 82616369--82616414 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
82616359 AAATTCTTTC
*
82616369 AATTTTTAGGTGAAAGTAATG
1 AATTTTTAGGTGAAAGTAATA
*
82616390 AATTTTTTGGTGAAAG-AACTA
1 AATTTTTAGGTGAAAGTAA-TA
82616411 AATT
1 AATT
82616415 GTAAAGAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39
Consensus pattern (21 bp):
AATTTTTAGGTGAAAGTAATA
Found at i:82617133 original size:28 final size:28
Alignment explanation
Indices: 82617071--82617136 Score: 123
Period size: 28 Copynumber: 2.4 Consensus size: 28
82617061 CGTGTCAATG
*
82617071 GCCCGTGTCCCTCACACGGCCACGACAC
1 GCCCGTTTCCCTCACACGGCCACGACAC
82617099 GCCCGTTTCCCTCACACGGCCACGACAC
1 GCCCGTTTCCCTCACACGGCCACGACAC
82617127 GCCCGTTTCC
1 GCCCGTTTCC
82617137 TAGCCCGTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.15, C:0.50, G:0.20, T:0.15
Consensus pattern (28 bp):
GCCCGTTTCCCTCACACGGCCACGACAC
Found at i:82618194 original size:47 final size:46
Alignment explanation
Indices: 82618090--82618213 Score: 130
Period size: 47 Copynumber: 2.7 Consensus size: 46
82618080 GATAAGGTGC
** *
82618090 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATTTCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAACTCATATCTC-AGT
82618137 CGATGCCATGTCCCAAACATGGTCTTACACTAACT-ATCATCTC-GT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAACTCAT-ATCTCAGT
* *
82618182 CGCTGATG-CATGTCCTAGACAT-GTCTTACACT
1 --C-GATGCCATGTCCCAAACATGGTCTTACACT
82618214 GGCTTACGTC
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
45 2 0.03
46 12 0.18
47 50 0.74
48 4 0.06
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (46 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAACTCATATCTCAGT
Found at i:82625325 original size:13 final size:13
Alignment explanation
Indices: 82625307--82625334 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
82625297 AGAAGGGTCT
82625307 TTTTCATTCATTA
1 TTTTCATTCATTA
82625320 TTTTCATTCATTA
1 TTTTCATTCATTA
82625333 TT
1 TT
82625335 GCAAATTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTCATTCATTA
Found at i:82630504 original size:14 final size:14
Alignment explanation
Indices: 82630485--82630519 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
82630475 GTGTATATGA
82630485 TGGTAATGTTCACT
1 TGGTAATGTTCACT
*
82630499 TGGTAATGTTGACT
1 TGGTAATGTTCACT
*
82630513 TTGTAAT
1 TGGTAAT
82630520 ATATATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.46
Consensus pattern (14 bp):
TGGTAATGTTCACT
Found at i:82635312 original size:18 final size:18
Alignment explanation
Indices: 82635289--82635324 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
82635279 TTTATGCTTA
82635289 TAGTAAATGATTTTTTAT
1 TAGTAAATGATTTTTTAT
82635307 TAGTAAATGATTTTTTAT
1 TAGTAAATGATTTTTTAT
82635325 GTGTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (18 bp):
TAGTAAATGATTTTTTAT
Found at i:82636919 original size:40 final size:40
Alignment explanation
Indices: 82636849--82637066 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
82636839 AAGCCAGGTA
* * * *
82636849 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
82636888 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82636928 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82636968 CCTTCGGGGCTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
82637008 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
82637048 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
82637067 TTATCATCCG
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 13 0.08
40 148 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82645010 original size:40 final size:40
Alignment explanation
Indices: 82644940--82645157 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
82644930 AAGCCAGGTA
* * * *
82644940 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
82644979 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82645019 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82645059 CCTTCGGGGCTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
82645099 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
82645139 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
82645158 TTATCATCTG
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 13 0.08
40 148 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82647180 original size:14 final size:14
Alignment explanation
Indices: 82647161--82647195 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
82647151 GTGTATATGA
82647161 TGGTAATGTTGACT
1 TGGTAATGTTGACT
82647175 TGGTAATGTTGACT
1 TGGTAATGTTGACT
*
82647189 TTGTAAT
1 TGGTAAT
82647196 ATATATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.23, C:0.06, G:0.26, T:0.46
Consensus pattern (14 bp):
TGGTAATGTTGACT
Found at i:82651836 original size:25 final size:25
Alignment explanation
Indices: 82651806--82651856 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
82651796 ATAATATGTT
*
82651806 TAATTTTGAATTGTGTTGTAATTCA
1 TAATTTTGAATTATGTTGTAATTCA
82651831 TAATTTTGAATTATGTTGTAATTCA
1 TAATTTTGAATTATGTTGTAATTCA
82651856 T
1 T
82651857 GTATTTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.14, T:0.53
Consensus pattern (25 bp):
TAATTTTGAATTATGTTGTAATTCA
Found at i:82661666 original size:40 final size:40
Alignment explanation
Indices: 82661615--82661807 Score: 273
Period size: 40 Copynumber: 4.8 Consensus size: 40
82661605 GGATATGGCT
* *
82661615 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TAGTA
82661655 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAGTA
* * * *
82661695 ACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAGTA
* *
82661734 ACTCGCACAAATGCCTTCGGGACTTAACTCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAGTA
* *
82661774 ACTCGTACAAATGCCTTCGGGACCTAACCCGGAT
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGAT
82661808 ATCATTCGAA
Statistics
Matches: 138, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.25
40 101 0.73
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAGTA
Found at i:82661733 original size:79 final size:80
Alignment explanation
Indices: 82661615--82661809 Score: 286
Period size: 79 Copynumber: 2.5 Consensus size: 80
82661605 GGATATGGCT
* *
82661615 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACAT
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACAT
82661680 AACCCGGATTTAGTA
66 AACCCGGATTTAGTA
* * *
82661695 ACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACA
*
82661758 TAACTCGGATTTAGTA
65 TAACCCGGATTTAGTA
* * *
82661774 ACTCGTACAAATGCCTTCGGGACCTAACCCGGATAT
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATAT
82661810 CATTCGAATA
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 71 0.70
80 29 0.28
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACAT
AACCCGGATTTAGTA
Found at i:82665225 original size:13 final size:13
Alignment explanation
Indices: 82665207--82665233 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82665197 CGTGTCTGTA
82665207 CACACGGCCGTGT
1 CACACGGCCGTGT
82665220 CACACGGCCGTGT
1 CACACGGCCGTGT
82665233 C
1 C
82665234 CTACTGCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.41, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGCCGTGT
Found at i:82667053 original size:33 final size:33
Alignment explanation
Indices: 82667001--82667066 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
82666991 GGTTTCGAGC
82667001 CCCTAAATCGACGCCTGTTGATTCTTAAGTGCT
1 CCCTAAATCGACGCCTGTTGATTCTTAAGTGCT
* *
82667034 CCCTGAATCGACGCTTGTTGATTCTTAAGTGCT
1 CCCTAAATCGACGCCTGTTGATTCTTAAGTGCT
82667067 GTCTCGATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.35
Consensus pattern (33 bp):
CCCTAAATCGACGCCTGTTGATTCTTAAGTGCT
Found at i:82671339 original size:44 final size:44
Alignment explanation
Indices: 82671276--82671364 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
82671266 TCATTCGAGA
* *
82671276 AAAAATTAAAAATATTTGTTTTACACATACTCTCTTTATTTTGT
1 AAAAATTAAAAATATTTGTTTCACACATACACTCTTTATTTTGT
* * *
82671320 AAAAATTAAAAATTTTTGTTTCGCACATGCACTCTTTATTTTGT
1 AAAAATTAAAAATATTTGTTTCACACATACACTCTTTATTTTGT
82671364 A
1 A
82671365 CCAAAGTTCC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (44 bp):
AAAAATTAAAAATATTTGTTTCACACATACACTCTTTATTTTGT
Found at i:82674122 original size:24 final size:24
Alignment explanation
Indices: 82674094--82674145 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
82674084 CTATTCCTCA
82674094 AGTTAGTACAAAAACTTAGAGTAG
1 AGTTAGTACAAAAACTTAGAGTAG
82674118 AGTTAGTACAAAAACTTAGAGTAG
1 AGTTAGTACAAAAACTTAGAGTAG
82674142 AGTT
1 AGTT
82674146 GTTTCCTCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.44, C:0.08, G:0.21, T:0.27
Consensus pattern (24 bp):
AGTTAGTACAAAAACTTAGAGTAG
Found at i:82675581 original size:19 final size:21
Alignment explanation
Indices: 82675546--82675585 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
82675536 GTTTTATAGT
82675546 ATTTTTATATGTTTTTATTTC
1 ATTTTTATATGTTTTTATTTC
82675567 ATTTTT-TAT-TTTTTATTTC
1 ATTTTTATATGTTTTTATTTC
82675586 TTTGTGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.53
20 3 0.16
21 6 0.32
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.75
Consensus pattern (21 bp):
ATTTTTATATGTTTTTATTTC
Found at i:82679145 original size:25 final size:25
Alignment explanation
Indices: 82679093--82679145 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
82679083 ATTTATAAAA
* *
82679093 TTTTAAAATATTAATATTTCTATTT
1 TTTTAAAAAATTAATATTTCTATAT
*
82679118 TTTTAAAAAATTACTAATTT-TATAT
1 TTTTAAAAAATTAAT-ATTTCTATAT
82679143 TTT
1 TTT
82679146 ATAGTTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
TTTTAAAAAATTAATATTTCTATAT
Found at i:82679178 original size:20 final size:20
Alignment explanation
Indices: 82679150--82679193 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
82679140 TATTTTATAG
82679150 TTTTTTAAT-TTTTTAATTT
1 TTTTTTAATATTTTTAATTT
*
82679169 TTTTTCTAATGATTTTTAGTTT
1 TTTTT-TAAT-ATTTTTAATTT
82679191 TTT
1 TTT
82679194 CGAATGATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 5 0.24
20 4 0.19
22 12 0.57
ACGTcount: A:0.18, C:0.02, G:0.05, T:0.75
Consensus pattern (20 bp):
TTTTTTAATATTTTTAATTT
Found at i:82681781 original size:6 final size:6
Alignment explanation
Indices: 82681765--82681793 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
82681755 ATTCCAAGGG
82681765 ATTAG- ATTAGA ATTAGA ATTAGA ATTAGA
1 ATTAGA ATTAGA ATTAGA ATTAGA ATTAGA
82681794 TTTTAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.34
Consensus pattern (6 bp):
ATTAGA
Found at i:82684870 original size:29 final size:29
Alignment explanation
Indices: 82684831--82684892 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
82684821 CTTAGAAACC
82684831 AAAAAAATGACCAATTTTGTCACATCCCA
1 AAAAAAATGACCAATTTTGTCACATCCCA
82684860 AAAAAAATGACCAATTTTGTCACATCCCA
1 AAAAAAATGACCAATTTTGTCACATCCCA
82684889 AAAA
1 AAAA
82684893 TGGTCACATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.48, C:0.23, G:0.06, T:0.23
Consensus pattern (29 bp):
AAAAAAATGACCAATTTTGTCACATCCCA
Found at i:82686819 original size:48 final size:48
Alignment explanation
Indices: 82686748--82686884 Score: 172
Period size: 47 Copynumber: 2.9 Consensus size: 48
82686738 AAAGTGGAAG
*
82686748 TTATTGGCAGTTTATCTACGATTTTGGTGACACTGTTCACAATATTGA
1 TTATTGGCAGTTTATCTGCGATTTTGGTGACACTGTTCACAATATTGA
* * * * * *
82686796 TTATTGGCAATTTATCTGCGATTTTGGTGGC-TTGTCCACTATATTTA
1 TTATTGGCAGTTTATCTGCGATTTTGGTGACACTGTTCACAATATTGA
*
82686843 TTATTGGCAGTTTATTTGC-ATTATT-GTGACACTGTTCACAAT
1 TTATTGGCAGTTTATCTGCGATT-TTGGTGACACTGTTCACAAT
82686885 TTGGTGTGTT
Statistics
Matches: 74, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
46 7 0.09
47 39 0.53
48 28 0.38
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.45
Consensus pattern (48 bp):
TTATTGGCAGTTTATCTGCGATTTTGGTGACACTGTTCACAATATTGA
Found at i:82692673 original size:26 final size:26
Alignment explanation
Indices: 82692644--82692697 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
82692634 CTACACTTAC
* *
82692644 TGTTATTGGTAGCTACGCTGCGTTAT
1 TGTTATTGGCAGCTACGCTGCGATAT
**
82692670 TGTTATTGGCAGCTTTGCTGCGATAT
1 TGTTATTGGCAGCTACGCTGCGATAT
82692696 TG
1 TG
82692698 ATGTGCTGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.15, G:0.28, T:0.43
Consensus pattern (26 bp):
TGTTATTGGCAGCTACGCTGCGATAT
Found at i:82697068 original size:27 final size:28
Alignment explanation
Indices: 82697024--82697158 Score: 103
Period size: 29 Copynumber: 4.8 Consensus size: 28
82697014 TACATACATG
*
82697024 CATATGGCCCA-CTTGGCCC-ATCTCATT
1 CATATGGCCCATC-AGGCCCAATCTCATT
*
82697051 CATATGGCCCATCAGGCCCAATTCACATT
1 CATATGGCCCATCAGGCCCAA-TCTCATT
* * *
82697080 CATATGGGCCATCAGGCCCAATTTATATT
1 CATATGGCCCATCAGGCCCAATCT-CATT
* * * * *
82697109 CATATGGCCTATTAGGTCCAAATCACCTT
1 CATATGGCCCATCAGG-CCCAATCTCATT
* * *
82697138 TATATGGCCCGTTAGGCCCAA
1 CATATGGCCCATCAGGCCCAA
82697159 ATCACCTTAT
Statistics
Matches: 85, Mismatches: 18, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
27 16 0.19
28 7 0.08
29 57 0.67
30 5 0.06
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATCTCATT
Found at i:82697091 original size:29 final size:29
Alignment explanation
Indices: 82697047--82697163 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 29
82697037 TGGCCCATCT
82697047 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* *
82697076 CATTCATATGGGCCATCAGGCCCAATTTA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * * * *
82697105 TATTCATATGGCCTATTAGGTCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * * * *
82697134 CCTTTATATGGCCCGTTAGGCCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
82697163 C
1 C
82697164 CTTATATTCA
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGCCCAATTCA
Found at i:82697143 original size:58 final size:58
Alignment explanation
Indices: 82697048--82697158 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 58
82697038 GGCCCATCTC
* *
82697048 ATTCATATGGCCCATCAGGCCCAATTCACATTCATATGGGCCATCAGGCCCAATTTAT
1 ATTCATATGGCCCATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATTTAT
* * * * * * *
82697106 ATTCATATGGCCTATTAGGTCCAAATCACCTTTATATGGCCCGTTAGGCCCAA
1 ATTCATATGGCCCATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAA
82697159 ATCACCTTAT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 44 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (58 bp):
ATTCATATGGCCCATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATTTAT
Found at i:82706833 original size:199 final size:199
Alignment explanation
Indices: 82706470--82706838 Score: 569
Period size: 199 Copynumber: 1.9 Consensus size: 199
82706460 TTTTTGACCC
* * *
82706470 ACATGGCCTGGCCAAACGGGTGTGTGGAGCACACGACCTGGCCACACCGGTGTGTGGGATCTCAC
1 ACATGGCCTGACCAAACGGGTGTGTGAAGCACACGACCTGGCCACACCGGCGTGTGGGATCTCAC
82706535 ATGGGCGTGGGAGAAGCGAAGAAAAACACACAAGGCCTGGCGACATGGCCATGTGACCCACACGA
66 ATGGGCGTGGGAGAAGCGAAGAAAAACACACAAGGCCTGGCGACATGGCCATGTGACCCACACGA
* * * ** *
82706600 CCTGGACACATGGGCGTGTCCTAGGCTGTGTGAAACTTGGAGCTAATTTTTTTTCAAAGTCACAG
131 CCTAGACACACGGGCATGTCCTAGGCCATGTGAAAATTGGAGCTAATTTTTTTTCAAAGTCACAG
82706665 AGTT
196 AGTT
* * *
82706669 ACATGGCCTGACCATACGGGTGTGTGAAGCACACGGCCTGGCCACACGGGCGTGTGGGATCTCAC
1 ACATGGCCTGACCAAACGGGTGTGTGAAGCACACGACCTGGCCACACCGGCGTGTGGGATCTCAC
* * * * *
82706734 ATGGGCGTGGGAGAAGCGAAGGAAAACACACACGGCTTGGCGACATGGCCATGTGACCCAGACGG
66 ATGGGCGTGGGAGAAGCGAAGAAAAACACACAAGGCCTGGCGACATGGCCATGTGACCCACACGA
82706799 CCTAGACACACGGGCATGTCC-ATGGCCATGTGAAAATTGG
131 CCTAGACACACGGGCATGTCCTA-GGCCATGTGAAAATTGG
82706839 GTTAATCACC
Statistics
Matches: 152, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
198 1 0.01
199 151 0.99
ACGTcount: A:0.25, C:0.25, G:0.32, T:0.18
Consensus pattern (199 bp):
ACATGGCCTGACCAAACGGGTGTGTGAAGCACACGACCTGGCCACACCGGCGTGTGGGATCTCAC
ATGGGCGTGGGAGAAGCGAAGAAAAACACACAAGGCCTGGCGACATGGCCATGTGACCCACACGA
CCTAGACACACGGGCATGTCCTAGGCCATGTGAAAATTGGAGCTAATTTTTTTTCAAAGTCACAG
AGTT
Found at i:82706890 original size:22 final size:21
Alignment explanation
Indices: 82706853--82706904 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
82706843 ATCACCCCAA
*
82706853 TTTT-ATTTTATTTTATTTAT
1 TTTTAATTTTATATTATTTAT
82706873 TTTTAATTGTTATATTATTTAT
1 TTTTAATT-TTATATTATTTAT
82706895 TTTT-ATTTTA
1 TTTTAATTTTA
82706905 CTAATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 7 0.24
21 6 0.21
22 16 0.55
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (21 bp):
TTTTAATTTTATATTATTTAT
Found at i:82706911 original size:22 final size:20
Alignment explanation
Indices: 82706853--82707038 Score: 82
Period size: 19 Copynumber: 8.7 Consensus size: 20
82706843 ATCACCCCAA
*
82706853 TTTTATTTTATTTTATTTAT
1 TTTTATTTTATATTATTTAT
82706873 TTTTAATTGTTATATTATTTAT
1 TTTT-ATT-TTATATTATTTAT
82706895 TTTTATTTTACTAATTAATTAATAAAT
1 TTTTATTTTA-T-ATT-ATT--T--AT
*
82706922 GTATTATTCTTATACTTATATT-T
1 -TTTTATT-TTATA-TTAT-TTAT
* *
82706945 TTAATTTTTTTATATT-TTAAT
1 TT--TTATTTTATATTATTTAT
82706966 TTTT-TTATATATATT-TATTAT
1 TTTTATT-T-TATATTAT-TTAT
82706987 TTATTATTTT-TATATATTT-T
1 TT-TTATTTTATAT-TATTTAT
* *
82707007 TATTATTTT-TATTTTTTAT
1 TTTTATTTTATATTATTTAT
82707026 TTTTATTTT-TATT
1 TTTTATTTTATATT
82707039 TTTTTCTATT
Statistics
Matches: 133, Mismatches: 9, Indels: 49
0.70 0.05 0.26
Matches are distributed among these distances:
18 6 0.05
19 26 0.20
20 20 0.15
21 20 0.15
22 26 0.20
23 11 0.08
24 4 0.03
25 1 0.01
26 1 0.01
27 5 0.04
28 10 0.08
29 3 0.02
ACGTcount: A:0.27, C:0.02, G:0.01, T:0.70
Consensus pattern (20 bp):
TTTTATTTTATATTATTTAT
Found at i:82706982 original size:26 final size:25
Alignment explanation
Indices: 82706953--82707043 Score: 86
Period size: 26 Copynumber: 3.7 Consensus size: 25
82706943 TTTTAATTTT
82706953 TTTATATTTTAATTTTTTTATATATA
1 TTTATATTTT-ATTTTTTTATATATA
*
82706979 TTTAT-TATTTATTATTTTTATATATT
1 TTTATAT-TTTATT-TTTTTATATATA
*
82707005 TTTATTATTTT-TATTTTT-TAT-T-
1 TTTA-TATTTTATTTTTTTATATATA
82707027 TTTAT-TTTTATTTTTTT
1 TTTATATTTTATTTTTTT
82707044 CTATTTCTAT
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
20 4 0.07
21 7 0.12
22 4 0.07
23 1 0.02
24 3 0.05
25 9 0.16
26 24 0.42
27 4 0.07
28 1 0.02
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (25 bp):
TTTATATTTTATTTTTTTATATATA
Found at i:82706986 original size:13 final size:13
Alignment explanation
Indices: 82706970--82707012 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
82706960 TTTAATTTTT
82706970 TTATATATATTTA
1 TTATATATATTTA
*
82706983 TTATTTATTATTT-
1 TTATATA-TATTTA
*
82706996 TTATATATTTTTA
1 TTATATATATTTA
82707009 TTAT
1 TTAT
82707013 TTTTATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
12 4 0.16
13 16 0.64
14 5 0.20
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTATATATATTTA
Found at i:82707041 original size:6 final size:6
Alignment explanation
Indices: 82706940--82707061 Score: 76
Period size: 6 Copynumber: 20.0 Consensus size: 6
82706930 CTTATACTTA
* * *
82706940 TATTTT TAATTT T-TTTA TATTTT AATTTT T-TTATAT ATATTTAT TATTTAT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATT-T-T -TATTT-T TATTT-T
*
82706991 TATTTT TATATATT T-TTAT TATTTT TATTTTT TATTTT TATTTT TA-TTT
1 TATTTT TAT-T-TT TATTTT TATTTT TA-TTTT TATTTT TATTTT TATTTT
* *
82707040 T-TTTC TATTTC TATTTT T-TTTT
1 TATTTT TATTTT TATTTT TATTTT
82707062 CTTTTCTCTT
Statistics
Matches: 95, Mismatches: 10, Indels: 23
0.74 0.08 0.18
Matches are distributed among these distances:
5 18 0.19
6 47 0.49
7 21 0.22
8 7 0.07
9 2 0.02
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:82707054 original size:16 final size:15
Alignment explanation
Indices: 82706940--82707060 Score: 97
Period size: 16 Copynumber: 8.1 Consensus size: 15
82706930 CTTATACTTA
*
82706940 TATTTTTAATTTTTT
1 TATTTTTATTTTTTT
*
82706955 TATATTTTAATTTTTT
1 TAT-TTTTATTTTTTT
* * *
82706971 TA--TATATATTTAT
1 TATTTTTATTTTTTT
*
82706984 TATTTATTATTTTTATA
1 TATTT-TTATTTTT-TT
*
82707001 TATTTTTATTATTTT
1 TATTTTTATTTTTTT
*
82707016 TA-TTTT-TTATTTT
1 TATTTTTATTTTTTT
82707029 TATTTTTATTTTTTT
1 TATTTTTATTTTTTT
*
82707044 CTATTTCTATTTTTTT
1 -TATTTTTATTTTTTT
82707060 T
1 T
82707061 TCTTTTCTCT
Statistics
Matches: 86, Mismatches: 12, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
13 18 0.21
14 8 0.09
15 14 0.16
16 41 0.48
17 5 0.06
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (15 bp):
TATTTTTATTTTTTT
Found at i:82707054 original size:28 final size:28
Alignment explanation
Indices: 82706940--82707061 Score: 89
Period size: 28 Copynumber: 4.4 Consensus size: 28
82706930 CTTATACTTA
82706940 TATTTTTAATTTTT-TTATATTTTAATTTT-
1 TATTTTT-ATTTTTATTAT-TTTT-ATTTTC
* *
82706969 T-TTATATATATTTATTATTTATTATTTT-
1 TATT-TTTATTTTTATTATTT-TTATTTTC
* *
82706997 TA--TATATTTTTATTATTTTTATTTTT
1 TATTTTTATTTTTATTATTTTTATTTTC
*
82707023 TATTTTTATTTTTATT-TTTTTCTATTTC
1 TATTTTTATTTTTATTATTTTTAT-TTTC
82707051 TATTTTT-TTTT
1 TATTTTTATTTT
82707062 CTTTTCTCTT
Statistics
Matches: 79, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
25 7 0.09
26 17 0.22
27 10 0.13
28 36 0.46
29 9 0.11
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (28 bp):
TATTTTTATTTTTATTATTTTTATTTTC
Found at i:82707056 original size:13 final size:12
Alignment explanation
Indices: 82706940--82707061 Score: 76
Period size: 11 Copynumber: 10.0 Consensus size: 12
82706930 CTTATACTTA
*
82706940 TATTTTTAATTT
1 TATTTTTATTTT
*
82706952 T-TTTATATTTT
1 TATTTTTATTTT
*
82706963 AATTTTT-TTATAT
1 TATTTTTATT-T-T
82706976 ATATTTATTATTTAT
1 -TATTT-TTATTT-T
82706991 TATTTTTATATATT
1 TATTTTTAT-T-TT
*
82707005 T-TTATTATTTT
1 TATTTTTATTTT
82707016 TATTTTTTATTTT
1 TA-TTTTTATTTT
82707029 TATTTTTA-TTT
1 TATTTTTATTTT
* *
82707040 T-TTTCTATTTC
1 TATTTTTATTTT
82707051 TATTTTT-TTTT
1 TATTTTTATTTT
82707062 CTTTTCTCTT
Statistics
Matches: 87, Mismatches: 11, Indels: 25
0.71 0.09 0.20
Matches are distributed among these distances:
10 5 0.06
11 23 0.26
12 17 0.20
13 22 0.25
14 12 0.14
15 6 0.07
16 2 0.02
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (12 bp):
TATTTTTATTTT
Found at i:82707059 original size:19 final size:18
Alignment explanation
Indices: 82706965--82707061 Score: 63
Period size: 19 Copynumber: 5.3 Consensus size: 18
82706955 TATATTTTAA
* *
82706965 TTTTTTTATATATATTTAT
1 TTTTTTTATTTCTATTT-T
* * *
82706984 TATTTATTATTTTTATATAT
1 T-TTTTTTATTTCTAT-TTT
* *
82707004 TTTTATTATTTTTATTTT
1 TTTTTTTATTTCTATTTT
*
82707022 TTATTTTTATTT-T-TATT
1 TT-TTTTTATTTCTATTTT
*
82707039 TTTTTCTATTTCTATTTT
1 TTTTTTTATTTCTATTTT
82707057 TTTTT
1 TTTTT
82707062 CTTTTCTCTT
Statistics
Matches: 64, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
16 8 0.12
17 6 0.09
18 13 0.20
19 23 0.36
20 13 0.20
21 1 0.02
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTTTATTTCTATTTT
Found at i:82707083 original size:22 final size:21
Alignment explanation
Indices: 82707001--82707083 Score: 67
Period size: 22 Copynumber: 3.7 Consensus size: 21
82706991 TATTTTTATA
* * *
82707001 TATTTTTATTATTTTTATTTTT
1 TATTTCTATT-TTTTTCTTTTC
* *
82707023 TATTTTTATTTTTATTTTTTTC
1 TATTTCTATTTTT-TTCTTTTC
82707045 TATTTCTATTTTTTTTTCTTTTC
1 TATTTCTA--TTTTTTTCTTTTC
*
82707068 TCTTTCGTATTTTTTT
1 TATTTC-TATTTTTTT
82707084 TACTATTATC
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
21 3 0.06
22 30 0.58
23 12 0.23
24 7 0.13
ACGTcount: A:0.12, C:0.07, G:0.01, T:0.80
Consensus pattern (21 bp):
TATTTCTATTTTTTTCTTTTC
Found at i:82707143 original size:3 final size:3
Alignment explanation
Indices: 82707135--82707190 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
82707125 ATTGAGTTTT
82707135 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
82707183 TTA TTA TT
1 TTA TTA TT
82707191 TATCTTTCTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:82708238 original size:22 final size:22
Alignment explanation
Indices: 82708210--82708251 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
82708200 TCTATTGTTC
82708210 TAAAAAAA-TGAAAACAAAAAAG
1 TAAAAAAAGTGAAAA-AAAAAAG
82708232 TAAAAAAAGTGAAAAAAAAA
1 TAAAAAAAGTGAAAAAAAAA
82708252 TACATTTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.79, C:0.02, G:0.10, T:0.10
Consensus pattern (22 bp):
TAAAAAAAGTGAAAAAAAAAAG
Found at i:82720472 original size:26 final size:25
Alignment explanation
Indices: 82720432--82720597 Score: 114
Period size: 23 Copynumber: 6.8 Consensus size: 25
82720422 AGACTCACCA
*
82720432 CAACTCGTATGAGCTTACTGATATAT
1 CAACTCGTAAGAGCTTACTGAT-TAT
*
82720458 CGAA-TCGTAAGAGCTTACT-ATTTT
1 C-AACTCGTAAGAGCTTACTGATTAT
* ** *
82720482 CAACTCATTGGAGCTTACCG-TT-T
1 CAACTCGTAAGAGCTTACTGATTAT
*
82720505 CAACTCGTATGAGCTTACTGATATAT
1 CAACTCGTAAGAGCTTACTGAT-TAT
* *
82720531 CGAA-TCGTAAGAGCGTACT-ATTTT
1 C-AACTCGTAAGAGCTTACTGATTAT
* ** *
82720555 CAACTCATTGGAGCTTACCG-TT-T
1 CAACTCGTAAGAGCTTACTGATTAT
*
82720578 CAACTCGTATGAGCTTACTG
1 CAACTCGTAAGAGCTTACTG
82720598 TTCAGCTCGA
Statistics
Matches: 109, Mismatches: 22, Indels: 21
0.72 0.14 0.14
Matches are distributed among these distances:
23 38 0.35
24 32 0.29
25 5 0.05
26 30 0.28
27 4 0.04
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.34
Consensus pattern (25 bp):
CAACTCGTAAGAGCTTACTGATTAT
Found at i:82720551 original size:73 final size:73
Alignment explanation
Indices: 82720432--82720597 Score: 323
Period size: 73 Copynumber: 2.3 Consensus size: 73
82720422 AGACTCACCA
*
82720432 CAACTCGTATGAGCTTACTGATATATCGAATCGTAAGAGCTTACTATTTTCAACTCATTGGAGCT
1 CAACTCGTATGAGCTTACTGATATATCGAATCGTAAGAGCGTACTATTTTCAACTCATTGGAGCT
82720497 TACCGTTT
66 TACCGTTT
82720505 CAACTCGTATGAGCTTACTGATATATCGAATCGTAAGAGCGTACTATTTTCAACTCATTGGAGCT
1 CAACTCGTATGAGCTTACTGATATATCGAATCGTAAGAGCGTACTATTTTCAACTCATTGGAGCT
82720570 TACCGTTT
66 TACCGTTT
82720578 CAACTCGTATGAGCTTACTG
1 CAACTCGTATGAGCTTACTG
82720598 TTCAGCTCGA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 92 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.34
Consensus pattern (73 bp):
CAACTCGTATGAGCTTACTGATATATCGAATCGTAAGAGCGTACTATTTTCAACTCATTGGAGCT
TACCGTTT
Found at i:82720606 original size:22 final size:23
Alignment explanation
Indices: 82720479--82720640 Score: 104
Period size: 23 Copynumber: 6.9 Consensus size: 23
82720469 AGCTTACTAT
*
82720479 TTTCAACTC-ATTGGAGCTTACCG
1 TTTCAACTCGA-TAGAGCTTACCG
*
82720502 TTTCAACTCG-TATGAGCTTACTG
1 TTTCAACTCGATA-GAGCTTACCG
* **
82720525 ATATATCGAA-TCG-TAAGAGCGTACTAT
1 -T-T-TC-AACTCGAT-AGAGCTTAC-CG
*
82720552 TTTCAACTC-ATTGGAGCTTACCG
1 TTTCAACTCGA-TAGAGCTTACCG
*
82720575 TTTCAACTCG-TATGAGCTTACTG
1 TTTCAACTCGATA-GAGCTTACCG
*
82720598 -TTCAGCTCGATAGAGCTTACCG
1 TTTCAACTCGATAGAGCTTACCG
*
82720620 TTTCAACTCAATAGAGCTTAC
1 TTTCAACTCGATAGAGCTTAC
82720641 TGTTCATCAG
Statistics
Matches: 109, Mismatches: 15, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
22 19 0.17
23 58 0.53
24 12 0.11
25 3 0.03
26 14 0.13
27 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (23 bp):
TTTCAACTCGATAGAGCTTACCG
Found at i:82721667 original size:32 final size:30
Alignment explanation
Indices: 82721600--82721667 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 30
82721590 GCACGACCTA
*
82721600 GACACACGAGCATGTCTACTAGCCATGTGT
1 GACACACAAGCATGTCTACTAGCCATGTGT
* *
82721630 GACACACAAGCATGTCTACTGGCCGTGTGT
1 GACACACAAGCATGTCTACTAGCCATGTGT
82721660 GACACACA
1 GACACACA
82721668 GGCTGGCACA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (30 bp):
GACACACAAGCATGTCTACTAGCCATGTGT
Found at i:82725172 original size:42 final size:42
Alignment explanation
Indices: 82725114--82725202 Score: 135
Period size: 42 Copynumber: 2.1 Consensus size: 42
82725104 CCTATTTATA
* * * *
82725114 GGAGT-TCTCATGTCTCTTTATAGGGATATAACTATCCAATT
1 GGAGTCTCTCATCTCTCTTCATAGGAATATAACTACCCAATT
82725155 GGAGTCTCTCATCTCTCTTCATAGGAATATAACTACCCAATT
1 GGAGTCTCTCATCTCTCTTCATAGGAATATAACTACCCAATT
82725197 GGAGTC
1 GGAGTC
82725203 ATATCTTTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 5 0.12
42 38 0.88
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (42 bp):
GGAGTCTCTCATCTCTCTTCATAGGAATATAACTACCCAATT
Found at i:82727358 original size:106 final size:106
Alignment explanation
Indices: 82727173--82727380 Score: 328
Period size: 106 Copynumber: 2.0 Consensus size: 106
82727163 AATCAATATA
* * *
82727173 AGCCAATACATTTGGCTAATCATAACAACATCTATCAAAAAAACTAAGTCCCTATACATGCCACT
1 AGCCAATACATTTCGCAAATCACAACAACATCTATCAAAAAAACTAAGTCCCTATACATGCCACT
82727238 CACTTGAAGGTGCTTAATACAAATATGTCAATACTCCGAAG
66 CACTTGAAGGTGCTTAATACAAATATGTCAATACTCCGAAG
* * *
82727279 AGCCAATACATTTCGCAAATCACAACAACATCTATCCTAAAAAA-TAAGTCGCTATACATGTCAC
1 AGCCAATACATTTCGCAAATCACAACAACATCTAT-CAAAAAAACTAAGTCCCTATACATGCCAC
* *
82727343 TCACTTGAAGGTGCTTAATACACATATGTTAATACTCC
65 TCACTTGAAGGTGCTTAATACAAATATGTCAATACTCC
82727381 AAAGGTGATG
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
106 86 0.92
107 7 0.08
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (106 bp):
AGCCAATACATTTCGCAAATCACAACAACATCTATCAAAAAAACTAAGTCCCTATACATGCCACT
CACTTGAAGGTGCTTAATACAAATATGTCAATACTCCGAAG
Found at i:82728658 original size:49 final size:49
Alignment explanation
Indices: 82728553--82728818 Score: 251
Period size: 49 Copynumber: 5.5 Consensus size: 49
82728543 AGATGCCAAC
* * ** * *
82728553 GCCATGTCCTAGACATGGTCTTACACTGGCTAGC--ACATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTAGCTTTCATATATCAAGGTCGAT
* * *
82728601 GTCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATCAAGGTCGAT
* * * *
82728650 GCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATC-AGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATCAAG-GTCGAT
*
82728699 GCCATGTCCCAGACAGGTCTTACACTAGCTTGT-ATATCTCAAGGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTT-TCATATATCAAGGTCGAT
* * * * * *
82728748 G-CATGTCCCAGACATGTCTTACACTAGC--TCTTGTCTCAATGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATCAAGGTCGAT
* *
82728794 G-CATGTCCCAAACATGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
82728819 GGCTCTGTCA
Statistics
Matches: 185, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
45 1 0.01
46 36 0.19
47 14 0.08
48 41 0.22
49 90 0.49
50 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATCAAGGTCGAT
Found at i:82728718 original size:98 final size:96
Alignment explanation
Indices: 82728555--82728818 Score: 304
Period size: 98 Copynumber: 2.8 Consensus size: 96
82728545 ATGCCAACGC
* ** *
82728555 CATGTCCTAGACATGGTCTTACACTGGCTAGCA-C-ATCAAAGTCGATGTCATGTCCCAGACAGG
1 CATGTCCCAGACA-GGTCTTACACTGGCTCTCATCTATCAATGTCGATG-CATGTCCCAGACAGG
82728618 TCTTACACTAACTT-TCATATATCAAGGCCGATG
64 TCTTACACTAACTTGT-ATATATCAAGGCCGATG
* *
82728651 CCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAGTGTCGATGCCATGTCCCAGACAGG
1 -CATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAATGTCGATG-CATGTCCCAGACAGG
* * *
82728716 TCTTACACTAGCTTGTATATCTCAAGGTCGATG
64 TCTTACACTAACTTGTATATATCAAGGCCGATG
* * * * * * *
82728749 CATGTCCCAGACATGTCTTACACTAGCTCT--TGTCTCAATGCCGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAATGTCGATGCATGTCCCAGACAGGTC
82728812 TTACACT
66 TTACACT
82728819 GGCTCTGTCA
Statistics
Matches: 145, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
94 22 0.15
95 12 0.08
96 17 0.12
97 39 0.27
98 54 0.37
99 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (96 bp):
CATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAATGTCGATGCATGTCCCAGACAGGTC
TTACACTAACTTGTATATATCAAGGCCGATG
Found at i:82729748 original size:43 final size:43
Alignment explanation
Indices: 82729637--82729731 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 43
82729627 ATGTATTGGC
** *
82729637 AGTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCACTA
1 AGTGTGCGATACAATTATAGTTTCAGCTAATTAATTGGCACTA
*
82729680 AGTGTGTGATACAATTATAGTTTCAGCTAATTAATTGGCACTA
1 AGTGTGCGATACAATTATAGTTTCAGCTAATTAATTGGCACTA
82729723 AGTGTGCGA
1 AGTGTGCGA
82729732 GTTCATTGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.33
Consensus pattern (43 bp):
AGTGTGCGATACAATTATAGTTTCAGCTAATTAATTGGCACTA
Found at i:82732200 original size:20 final size:20
Alignment explanation
Indices: 82732175--82732213 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
82732165 AAAATTTCAA
82732175 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
82732195 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
82732214 AATAGCCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:82735982 original size:15 final size:15
Alignment explanation
Indices: 82735964--82736006 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
82735954 AATAGTTAAT
82735964 AATAAAATGATATAA
1 AATAAAATGATATAA
82735979 AATAAAAT-A-AT-A
1 AATAAAATGATATAA
82735991 AATAAAAATGATATAA
1 AAT-AAAATGATATAA
82736007 TATATAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
12 4 0.17
13 7 0.29
14 2 0.08
15 10 0.42
16 1 0.04
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (15 bp):
AATAAAATGATATAA
Done.