Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 250 of 343
Found at i:82736083 original size:18 final size:18
Alignment explanation
Indices: 82736024--82736083 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
82736014 CAATTTACAT
*
82736024 ATATATAAATATAATAAA
1 ATATATATATATAATAAA
82736042 ATGA-AT-TATA-AAGTAAA
1 AT-ATATATATATAA-TAAA
*
82736059 AAATATATATATAATAAA
1 ATATATATATATAATAAA
*
82736077 ATTTATA
1 ATATATA
82736084 AAAACGTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
16 3 0.09
17 10 0.30
18 17 0.52
19 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
ATATATATATATAATAAA
Found at i:82738519 original size:9 final size:8
Alignment explanation
Indices: 82738503--82738528 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
82738493 GATAATAATC
82738503 TCTTTTTT
1 TCTTTTTT
82738511 TCTTTTTT
1 TCTTTTTT
82738519 TCTTTTTT
1 TCTTTTTT
82738527 TC
1 TC
82738529 ATGATTTACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (8 bp):
TCTTTTTT
Found at i:82745412 original size:22 final size:22
Alignment explanation
Indices: 82745387--82745432 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
82745377 TTAGTTCCAC
82745387 TTCATTAGATTTATAAGCTTTA
1 TTCATTAGATTTATAAGCTTTA
82745409 TTCATTAGATTTATAAGCTTTA
1 TTCATTAGATTTATAAGCTTTA
82745431 TT
1 TT
82745433 GTAATCACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (22 bp):
TTCATTAGATTTATAAGCTTTA
Found at i:82747450 original size:14 final size:14
Alignment explanation
Indices: 82747431--82747458 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
82747421 AAATAAATAC
82747431 TTCAATCCTATAGT
1 TTCAATCCTATAGT
82747445 TTCAATCCTATAGT
1 TTCAATCCTATAGT
82747459 ATAGTGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
TTCAATCCTATAGT
Found at i:82750552 original size:21 final size:22
Alignment explanation
Indices: 82750514--82750557 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
82750504 TACTTTTGTA
* *
82750514 ATATCTTATTGTATTTTATATT
1 ATATATTATTGTAATTTATATT
82750536 ATATATTA-TGTAATTTATATT
1 ATATATTATTGTAATTTATATT
82750557 A
1 A
82750558 AATAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (22 bp):
ATATATTATTGTAATTTATATT
Found at i:82751917 original size:152 final size:153
Alignment explanation
Indices: 82751635--82751934 Score: 584
Period size: 152 Copynumber: 2.0 Consensus size: 153
82751625 AACAATCCCG
82751635 TGATATTGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTGTTG
1 TGATATTGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTGTTG
82751700 TATCCTCCATAATAGACAAACTTCCTCCATCTTAAAAAGACTTTAAAAGAAGTCTAAAACATAAG
66 TATCCTCCATAATAGACAAACTTCCTCCATCTTAAAAAGACTTTAAAAGAAGTCTAAAACATAAG
82751765 AAAGAGGAAATATCTCTTTCTTA
131 AAAGAGGAAATATCTCTTTCTTA
82751788 TGATA-TGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTGTTG
1 TGATATTGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTGTTG
*
82751852 TATCCTCCATAATAGACAAACTTCCTCCATCTTGAAAAGACTTTAAAAGAAGTCTAAAACATAAG
66 TATCCTCCATAATAGACAAACTTCCTCCATCTTAAAAAGACTTTAAAAGAAGTCTAAAACATAAG
82751917 AAAGAGGAAATATCTCTT
131 AAAGAGGAAATATCTCTT
82751935 GAGGCTTTGG
Statistics
Matches: 146, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
152 141 0.97
153 5 0.03
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (153 bp):
TGATATTGAAAAGATGTTGAATCAATTCAAGCAATATGATATGAAAATGGATGAAATGATTGTTG
TATCCTCCATAATAGACAAACTTCCTCCATCTTAAAAAGACTTTAAAAGAAGTCTAAAACATAAG
AAAGAGGAAATATCTCTTTCTTA
Found at i:82758597 original size:43 final size:43
Alignment explanation
Indices: 82758549--82758711 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 43
82758539 ATCGAGATGT
*
82758549 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* * *
82758592 GATTACATGTAAGACCATGTTTGGGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATTGA
* * * * * *
82758635 GATTTCGTCTAAGACCTTGTCTGGGACAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TGA
* * *
82758678 GATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
82758712 TGTACAAGCT
Statistics
Matches: 98, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 87 0.89
44 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
Found at i:82763972 original size:21 final size:19
Alignment explanation
Indices: 82763948--82764011 Score: 62
Period size: 21 Copynumber: 3.3 Consensus size: 19
82763938 AACTGTTCAA
82763948 CTCACACTGAGCTTTCATAAG
1 CTCACACT-AGCTTTCA-AAG
82763969 CTCACACTA-CTGTTC-AA-
1 CTCACACTAGCT-TTCAAAG
82763986 CTCACACTAAGCTTTCACAAG
1 CTCACACT-AGCTTTCA-AAG
82764007 CTCAC
1 CTCAC
82764012 CCCCATAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
17 8 0.22
18 6 0.16
19 4 0.11
20 6 0.16
21 13 0.35
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.27
Consensus pattern (19 bp):
CTCACACTAGCTTTCAAAG
Found at i:82763990 original size:38 final size:38
Alignment explanation
Indices: 82763939--82764011 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
82763929 CGTTTAAATA
* *
82763939 ACTGTTCAACTCACACTGAGCTTTCATAAGCTCACACT
1 ACTGTTCAACTCACACTAAGCTTTCACAAGCTCACACT
82763977 ACTGTTCAACTCACACTAAGCTTTCACAAGCTCAC
1 ACTGTTCAACTCACACTAAGCTTTCACAAGCTCAC
82764012 CCCCATAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.30, C:0.33, G:0.10, T:0.27
Consensus pattern (38 bp):
ACTGTTCAACTCACACTAAGCTTTCACAAGCTCACACT
Found at i:82763991 original size:17 final size:17
Alignment explanation
Indices: 82763939--82763994 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 17
82763929 CGTTTAAATA
82763939 ACTGTTCAACTCACACT
1 ACTGTTCAACTCACACT
82763956 GAGCT-TTCATAAGCTCACACT
1 -A-CTGTTC--AA-CTCACACT
82763977 ACTGTTCAACTCACACT
1 ACTGTTCAACTCACACT
82763994 A
1 A
82763995 AGCTTTCACA
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
17 9 0.27
18 6 0.18
19 4 0.12
20 6 0.18
21 8 0.24
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.29
Consensus pattern (17 bp):
ACTGTTCAACTCACACT
Found at i:82765833 original size:21 final size:21
Alignment explanation
Indices: 82765809--82765884 Score: 84
Period size: 21 Copynumber: 3.6 Consensus size: 21
82765799 TGTCCTTGAT
*
82765809 TCACACGGGCTTGTGCCTCTA
1 TCACACGGGCGTGTGCCTCTA
*
82765830 TCACACGAGCGTGTGCCTCTA
1 TCACACGGGCGTGTGCCTCTA
*
82765851 TCACAC-GGCAGTGTG-CTACTCG
1 TCACACGGGC-GTGTGCCT-CT-A
82765873 TCACACGGGCGT
1 TCACACGGGCGT
82765885 TTGGACCCCC
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
20 4 0.09
21 32 0.68
22 8 0.17
23 3 0.06
ACGTcount: A:0.17, C:0.33, G:0.26, T:0.24
Consensus pattern (21 bp):
TCACACGGGCGTGTGCCTCTA
Found at i:82768841 original size:18 final size:18
Alignment explanation
Indices: 82768808--82768842 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82768798 CTAAAGCTAT
*
82768808 TTTTATTTTTCTCTTTTA
1 TTTTATTTTTCGCTTTTA
*
82768826 TTTTATTTTTGGCTTTT
1 TTTTATTTTTCGCTTTT
82768843 CTGTTTTCAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.77
Consensus pattern (18 bp):
TTTTATTTTTCGCTTTTA
Found at i:82773276 original size:14 final size:14
Alignment explanation
Indices: 82773257--82773284 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
82773247 TAATCTCAAT
82773257 TTGCAACTATGTGA
1 TTGCAACTATGTGA
82773271 TTGCAACTATGTGA
1 TTGCAACTATGTGA
82773285 GAAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (14 bp):
TTGCAACTATGTGA
Found at i:82776351 original size:46 final size:46
Alignment explanation
Indices: 82776285--82776478 Score: 155
Period size: 46 Copynumber: 4.2 Consensus size: 46
82776275 CCCAAATAGG
* * *
82776285 GTCTTACACTGAC-ACATCTCGTA-GCCGATGCATGTCCCAAACAT
1 GTCTTACACTGGCTTCATCTCGTAGGCCGATGCATGTCCCAGACAT
* * *
82776329 GTCTTACACTGGCTTACGTCTCG-AGGCCTATGCATGTCTCAGACAT
1 GTCTTACACTGGCTT-CATCTCGTAGGCCGATGCATGTCCCAGACAT
* * * * * * *
82776375 GTCTTACACTAGCACTCGTCTC-AATGCCGATGCCATCTCCTAGACAT
1 GTCTTACACTGGC-TTCATCTCGTAGGCCGATG-CATGTCCCAGACAT
***
82776422 GGTCTTACACTGGCTCTCATAAGGT-GGCCGATGCATGTCCCAGACAT
1 -GTCTTACACTGGCT-TCATCTCGTAGGCCGATGCATGTCCCAGACAT
*
82776469 GTTTTACACT
1 GTCTTACACT
82776479 AGCTCACACA
Statistics
Matches: 117, Mismatches: 24, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
44 12 0.10
45 1 0.01
46 58 0.50
47 24 0.21
48 22 0.19
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GTCTTACACTGGCTTCATCTCGTAGGCCGATGCATGTCCCAGACAT
Found at i:82776427 original size:94 final size:92
Alignment explanation
Indices: 82776308--82776481 Score: 215
Period size: 94 Copynumber: 1.9 Consensus size: 92
82776298 ACATCTCGTA
* * ** * *
82776308 GCCGATGCATGTCCCAAACATGTCTTACACTGGCT-TACGTCTCGAGGCCTATGCATGTCTCAGA
1 GCCGATGCATCTCCCAAACATGTCTTACACTGGCTCT-CATAACGAGGCCGATGCATGTCCCAGA
82776372 CATGTCTTACACTAGCACTCGTCTCAAT
65 CATGTCTTACACTAGCACTCGTCTCAAT
* * * *
82776400 GCCGATGCCATCTCCTAGACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCATGTCCCAG
1 GCCGATG-CATCTCCCAAACAT-GTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCCAG
*
82776465 ACATGTTTTACACTAGC
64 ACATGTCTTACACTAGC
82776482 TCACACAAGT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
92 7 0.10
93 11 0.16
94 49 0.72
95 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (92 bp):
GCCGATGCATCTCCCAAACATGTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACTCGTCTCAAT
Found at i:82782461 original size:5 final size:5
Alignment explanation
Indices: 82782446--82782477 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
82782436 TTGTGTGTTC
82782446 TTTATT TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT T
82782478 CTCATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:82783359 original size:13 final size:13
Alignment explanation
Indices: 82783341--82783380 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
82783331 AGTTTGGCAA
82783341 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
82783354 TGCTTTTAAGAAG
1 TGCTTTTGAGAAG
*
82783367 TGCTTTTGAAAAG
1 TGCTTTTGAGAAG
82783380 T
1 T
82783381 TTAGTTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.28, C:0.07, G:0.25, T:0.40
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:82794758 original size:24 final size:23
Alignment explanation
Indices: 82794731--82794805 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 23
82794721 ACAAAAAAGA
82794731 TTTGTCTAAGTCATTTCATTTCTT
1 TTTGTCTAAGTCATTTC-TTTCTT
* *
82794755 TTTGTCCAAG---TTGCTTCTCTT
1 TTTGTCTAAGTCATTTCTT-TCTT
*
82794776 TTTGTCTAACTCATTTCTTTTCTT
1 TTTGTCTAAGTCATTTC-TTTCTT
82794800 CTTTGT
1 -TTTGT
82794806 AAGTTTCAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
20 2 0.05
21 15 0.38
24 16 0.40
25 7 0.17
ACGTcount: A:0.12, C:0.20, G:0.09, T:0.59
Consensus pattern (23 bp):
TTTGTCTAAGTCATTTCTTTCTT
Found at i:82797224 original size:17 final size:18
Alignment explanation
Indices: 82797174--82797236 Score: 76
Period size: 18 Copynumber: 3.6 Consensus size: 18
82797164 TTGATGATAC
82797174 CGATATTGATGATAGTGA
1 CGATATTGATGATAGTGA
*
82797192 CGATATTGATGCTAGT-A
1 CGATATTGATGATAGTGA
* *
82797209 CGTTATTAATGATAGTGA
1 CGATATTGATGATAGTGA
82797227 C-ACTATTGAT
1 CGA-TATTGAT
82797237 CGTGACCTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
17 14 0.38
18 23 0.62
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.37
Consensus pattern (18 bp):
CGATATTGATGATAGTGA
Found at i:82798982 original size:9 final size:9
Alignment explanation
Indices: 82798968--82799011 Score: 61
Period size: 9 Copynumber: 4.9 Consensus size: 9
82798958 CGTTCCATCA
82798968 TCCTTCTTT
1 TCCTTCTTT
82798977 TCCTTCTTT
1 TCCTTCTTT
*
82798986 TCTTTCTTT
1 TCCTTCTTT
*
82798995 TCTTTCTTT
1 TCCTTCTTT
*
82799004 CCCTTCTT
1 TCCTTCTT
82799012 CTTTGACTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (9 bp):
TCCTTCTTT
Found at i:82827693 original size:6 final size:6
Alignment explanation
Indices: 82827682--82827736 Score: 83
Period size: 6 Copynumber: 9.2 Consensus size: 6
82827672 GTTTCCAAAC
* * *
82827682 ATGGAA ATGGAA ATGGAA ATGAAA ATGAAA ATGAAA ATGGAA ATGGAA
1 ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA
82827730 ATGGAA A
1 ATGGAA A
82827737 ACTGCAATAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.56, C:0.00, G:0.27, T:0.16
Consensus pattern (6 bp):
ATGGAA
Found at i:82827934 original size:26 final size:26
Alignment explanation
Indices: 82827880--82827952 Score: 67
Period size: 26 Copynumber: 2.8 Consensus size: 26
82827870 AATTTTCTCG
*
82827880 AAATTTTACTGAGGGTAAAATCATCA
1 AAATTTTACTGAGGGTAAAATCATAA
* * **
82827906 AAATTTTGCTGGGGGTAAAATTGTAAA
1 AAATTTTACTGAGGGTAAAATCAT-AA
**
82827933 AAAAATTACT-AGGGTAAAAT
1 AAATTTTACTGAGGGTAAAAT
82827953 TGAGATGAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
26 29 0.78
27 8 0.22
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (26 bp):
AAATTTTACTGAGGGTAAAATCATAA
Found at i:82829955 original size:43 final size:43
Alignment explanation
Indices: 82829870--82830067 Score: 238
Period size: 43 Copynumber: 4.6 Consensus size: 43
82829860 TTATCTAAAA
* * ** *
82829870 AAACACCGCTAAAGGTCATGACCTTTAATGGCGCTTTCCCCAC
1 AAACGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTTTCCCAC
* *
82829913 AAACGCCGTTAAAAGTCATGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTTTCCCAC
*
82829956 AAATGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTTTCCCAC
* * *
82829999 AAACGCAGCT-AAAGATCATGACCTTCAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAAG-TCATGACCTTTAGCGGCGCTTTTCCCAC
* * *
82830042 AAATGTCGCT-AAAGACCATGACCTTT
1 AAACGCCGCTAAAAG-TCATGACCTTT
82830068 GGAAAAAACA
Statistics
Matches: 135, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
42 4 0.03
43 131 0.97
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:82830162 original size:10 final size:10
Alignment explanation
Indices: 82830149--82830174 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
82830139 ATTTTAAAAA
82830149 ATAAAATATT
1 ATAAAATATT
82830159 ATAAAATATT
1 ATAAAATATT
82830169 ATAAAA
1 ATAAAA
82830175 GTCATGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
ATAAAATATT
Found at i:82834112 original size:15 final size:16
Alignment explanation
Indices: 82834092--82834124 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
82834082 AGCCCAATAA
82834092 TTTTTTTCTTTCT-TT
1 TTTTTTTCTTTCTCTT
*
82834107 TTTTTTTTTTTCTCTT
1 TTTTTTTCTTTCTCTT
82834123 TT
1 TT
82834125 ATTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTTTTCTTTCTCTT
Found at i:82834114 original size:17 final size:17
Alignment explanation
Indices: 82834092--82834124 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
82834082 AGCCCAATAA
*
82834092 TTTTTTTCTT-TCTTTT
1 TTTTTTTTTTCTCTTTT
82834108 TTTTTTTTTTCTCTTTT
1 TTTTTTTTTTCTCTTTT
82834125 ATTATTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTTTTTTTCTCTTTT
Found at i:82834660 original size:14 final size:15
Alignment explanation
Indices: 82834621--82834651 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
82834611 ACTATTTAAT
82834621 ATATAAATTAAAAAC
1 ATATAAATTAAAAAC
82834636 ATATAAATTAAAAAC
1 ATATAAATTAAAAAC
82834651 A
1 A
82834652 ATCACTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
ATATAAATTAAAAAC
Found at i:82834854 original size:8 final size:7
Alignment explanation
Indices: 82834833--82834973 Score: 54
Period size: 7 Copynumber: 19.3 Consensus size: 7
82834823 CACACTAATT
82834833 ACCCTAA
1 ACCCTAA
82834840 ACCCTAA
1 ACCCTAA
82834847 ACCCCT-A
1 A-CCCTAA
* *
82834854 ACACTTA
1 ACCCTAA
*
82834861 ACCCTTA
1 ACCCTAA
82834868 ACCCTAAA
1 ACCCT-AA
*
82834876 ACCCATAC
1 ACCC-TAA
**
82834884 ACATTTAA
1 AC-CCTAA
*
82834892 ATCCTAA
1 ACCCTAA
82834899 ACCCTAA
1 ACCCTAA
82834906 A-CCTCATA
1 ACCCT-A-A
*
82834914 ACTCGTAA
1 AC-CCTAA
82834922 ACCCCT-A
1 A-CCCTAA
*
82834929 ACTCTTAA
1 AC-CCTAA
*
82834937 CCCCTAA
1 ACCCTAA
82834944 ACCCTAA
1 ACCCTAA
* *
82834951 GCCATAA
1 ACCCTAA
* *
82834958 AACATAA
1 ACCCTAA
82834965 ACCCTAA
1 ACCCTAA
82834972 AC
1 AC
82834974 TTCTTCCCCT
Statistics
Matches: 99, Mismatches: 23, Indels: 24
0.68 0.16 0.16
Matches are distributed among these distances:
6 7 0.07
7 64 0.65
8 23 0.23
9 3 0.03
10 2 0.02
ACGTcount: A:0.41, C:0.38, G:0.01, T:0.20
Consensus pattern (7 bp):
ACCCTAA
Found at i:82835478 original size:37 final size:39
Alignment explanation
Indices: 82835437--82835519 Score: 125
Period size: 37 Copynumber: 2.2 Consensus size: 39
82835427 TGTTTAAGGT
* * *
82835437 TTTAGGGGTTATAGTTTAGTGTTTATGGTT-TTT-AGGG
1 TTTAGGGGTTATAGATTAGTATTTATGATTCTTTGAGGG
82835474 TTTAGGGGTTATAGATTAGTATTTATGATTCTTTGAGGG
1 TTTAGGGGTTATAGATTAGTATTTATGATTCTTTGAGGG
82835513 TTTAGGG
1 TTTAGGG
82835520 TTTTAGGGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 27 0.66
38 3 0.07
39 11 0.27
ACGTcount: A:0.19, C:0.01, G:0.31, T:0.48
Consensus pattern (39 bp):
TTTAGGGGTTATAGATTAGTATTTATGATTCTTTGAGGG
Found at i:82839539 original size:6 final size:6
Alignment explanation
Indices: 82839523--82839568 Score: 67
Period size: 6 Copynumber: 7.7 Consensus size: 6
82839513 ATTTTAAATT
*
82839523 TTTAGTA TTTATA TTTATA TTTATT TTTATA TTTATA TTTA-A TTTA
1 TTTA-TA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTA
82839569 GTCTTAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 5 0.14
6 28 0.76
7 4 0.11
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (6 bp):
TTTATA
Found at i:82840754 original size:298 final size:293
Alignment explanation
Indices: 82840166--82840762 Score: 1140
Period size: 298 Copynumber: 2.0 Consensus size: 293
82840156 AATATATCTC
82840166 ATATTTTATTCAATAACTTTAAAAAACTTGGGAATTAAATTTTGGGTAAACTACAAATGGTCATC
1 ATATTTTATTCAATAACTTTAAAAAACTTGGGAATTAAATTTTGGGTAAACTACAAATGGTCATC
82840231 CAACTATACTCATGTTTTTGTTTTGGTCACCTAACTTTAAAAGTTTTCAATTTAGGTACTAACAT
66 CAACTATACTCATGTTTTTGTTTTGGTCACCTAACTTTAAAAGTTTTCAATTTAGGTACTAACAT
82840296 TTGAATTCATTTCTATTTTGATCATCCGCCGATTGATAATGAAAAGTCTTTTTGTTTATATTTTT
131 TTGAATTCATTTCTATTTTGATCATCCGCCGATTGATAATGAAAAGTCTTTTTGTTTATATTTTT
*
82840361 AAGAAGTTAGTGTTAAAAATTAACTGAGCACCATTAAAAATAATAGAATATACAAATTTTAAAAA
196 AAGAAGTTAGTGTTAAAAATTAACTGAACACCATTAAAAATAATAGAATATACAAATTTTAAAAA
82840426 TATAATGTATAATAAAATTATATAAATAATTTA
261 TATAATGTATAATAAAATTATATAAATAATTTA
82840459 ATATTTTATTCAATAACTTTAAAAAACTTGGGAAATTAAATTTTGGGTAAACTACAAATGGTCAT
1 ATATTTTATTCAATAACTTTAAAAAACTTGGG-AATTAAATTTTGGGTAAACTACAAATGGTCAT
82840524 CCAACTATACTCATGTTTTTGTTTTGGTCACCTAACTTTAAAAGTTTTCAATTTAGGTACTAACA
65 CCAACTATACTCATGTTTTTGTTTTGGTCACCTAACTTTAAAAGTTTTCAATTTAGGTACTAACA
82840589 TTTGAATTCATTTCTATTTTGATCATCCGCCGTTAAATTGATAATGAAAAGTCTTTTTGTTTATA
130 TTTGAATTCATTTCTATTTTGATCATCCGCCG----ATTGATAATGAAAAGTCTTTTTGTTTATA
82840654 TTTTTAAGAAGTTAGTGTTAAAAATTAACTGAACACCATTAAAAATAATAGAATATACAAATTTT
191 TTTTTAAGAAGTTAGTGTTAAAAATTAACTGAACACCATTAAAAATAATAGAATATACAAATTTT
82840719 AAAAATATAATGTATAATAAAATTATATAAATAATTTA
256 AAAAATATAATGTATAATAAAATTATATAAATAATTTA
82840757 ATATTT
1 ATATTT
82840763 GTAAAAGTAA
Statistics
Matches: 298, Mismatches: 1, Indels: 5
0.98 0.00 0.02
Matches are distributed among these distances:
293 32 0.11
294 129 0.43
298 137 0.46
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.40
Consensus pattern (293 bp):
ATATTTTATTCAATAACTTTAAAAAACTTGGGAATTAAATTTTGGGTAAACTACAAATGGTCATC
CAACTATACTCATGTTTTTGTTTTGGTCACCTAACTTTAAAAGTTTTCAATTTAGGTACTAACAT
TTGAATTCATTTCTATTTTGATCATCCGCCGATTGATAATGAAAAGTCTTTTTGTTTATATTTTT
AAGAAGTTAGTGTTAAAAATTAACTGAACACCATTAAAAATAATAGAATATACAAATTTTAAAAA
TATAATGTATAATAAAATTATATAAATAATTTA
Found at i:82841505 original size:10 final size:10
Alignment explanation
Indices: 82841492--82841570 Score: 53
Period size: 10 Copynumber: 8.3 Consensus size: 10
82841482 AGAAATATAG
82841492 AAAAATTTAT
1 AAAAATTTAT
82841502 -AAAATTT-T
1 AAAAATTTAT
* *
82841510 ATAAATTCAT
1 AAAAATTTAT
82841520 AAGAAATTTAT
1 AA-AAATTTAT
*
82841531 AAAAATGTA-
1 AAAAATTTAT
82841540 AAGAAA--TAT
1 AA-AAATTTAT
*
82841549 -AAAATTTGT
1 AAAAATTTAT
*
82841558 AAAAAATTAT
1 AAAAATTTAT
82841568 AAA
1 AAA
82841571 TTATCGAACC
Statistics
Matches: 53, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
7 3 0.06
8 4 0.08
9 16 0.30
10 21 0.40
11 9 0.17
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.34
Consensus pattern (10 bp):
AAAAATTTAT
Found at i:82841551 original size:18 final size:19
Alignment explanation
Indices: 82841527--82841570 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
82841517 CATAAGAAAT
82841527 TTATAAAA-ATGTAAAGAAA
1 TTATAAAATATGTAAA-AAA
*
82841546 -TATAAAATTTGTAAAAAA
1 TTATAAAATATGTAAAAAA
82841564 TTATAAA
1 TTATAAA
82841571 TTATCGAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (19 bp):
TTATAAAATATGTAAAAAA
Found at i:82841784 original size:28 final size:27
Alignment explanation
Indices: 82841753--82841822 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 27
82841743 TTTTTGATGC
*
82841753 ATTTTATAGTTTTTATGATTTTTATAAA
1 ATTTTATAATTTTTATGATTTTTAT-AA
82841781 ATTTTATAATTTTTATGATTTTTATAA
1 ATTTTATAATTTTTATGATTTTTATAA
82841808 ATTTTAATAATTTTT
1 ATTTT-ATAATTTTT
82841823 TATTAAAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (27 bp):
ATTTTATAATTTTTATGATTTTTATAA
Found at i:82841810 original size:19 final size:19
Alignment explanation
Indices: 82841762--82841881 Score: 77
Period size: 19 Copynumber: 6.3 Consensus size: 19
82841752 CATTTTATAG
*
82841762 TTTTTATGATTTTTATAAA
1 TTTTTATAATTTTTATAAA
* *
82841781 ATTTTATAATTTTTAT-GA
1 TTTTTATAATTTTTATAAA
* *
82841799 TTTTTATAAATTTTAATAAT
1 TTTTTAT-AATTTTTATAAA
* *
82841819 TTTTTATTAAAATTTAATAAA
1 TTTTTA-T-AATTTTTATAAA
* **
82841840 TTTTTTTATAATTTTAATTGA
1 --TTTTTATAATTTTTATAAA
82841861 TTTTTAT--TTTTTAT-AA
1 TTTTTATAATTTTTATAAA
82841877 TTTTT
1 TTTTT
82841882 TTTGCCACAT
Statistics
Matches: 82, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
16 6 0.07
17 6 0.07
18 7 0.09
19 29 0.35
20 6 0.07
21 21 0.26
22 1 0.01
23 6 0.07
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (19 bp):
TTTTTATAATTTTTATAAA
Found at i:82841829 original size:21 final size:21
Alignment explanation
Indices: 82841798--82841868 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
82841788 AATTTTTATG
82841798 ATTTTTA-TAAATTTTAATAA
1 ATTTTTATTAAATTTTAATAA
* *
82841818 TTTTTTATTAAAATTTAATAA
1 ATTTTTATTAAATTTTAATAA
**
82841839 ATTTTT-TTATAATTTTAATTG
1 ATTTTTATTA-AATTTTAATAA
82841860 ATTTTTATT
1 ATTTTTATT
82841869 TTTTATAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
20 9 0.21
21 31 0.74
22 2 0.05
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (21 bp):
ATTTTTATTAAATTTTAATAA
Found at i:82841882 original size:10 final size:9
Alignment explanation
Indices: 82841754--82841881 Score: 80
Period size: 9 Copynumber: 13.4 Consensus size: 9
82841744 TTTTGATGCA
*
82841754 TTTTATAGT
1 TTTTATAAT
*
82841763 TTTTATGAT
1 TTTTATAAT
*
82841772 TTTTATAAAA
1 TTTTAT-AAT
82841782 TTTTATAAT
1 TTTTATAAT
*
82841791 TTTTATGAT
1 TTTTATAAT
82841800 TTTTATAAAT
1 TTTTAT-AAT
*
82841810 TTTAATAATT
1 TTTTATAA-T
*
82841820 TTTTATTAAAA
1 TTTTA-T-AAT
*
82841831 TTTAATAAATTT
1 TTTTAT-AA--T
82841843 TTTTATAAT
1 TTTTATAAT
* *
82841852 TTTAATTGAT
1 TTTTA-TAAT
82841862 TTTTAT--T
1 TTTTATAAT
82841869 TTTTATAAT
1 TTTTATAAT
82841878 TTTT
1 TTTT
82841882 TTTGCCACAT
Statistics
Matches: 93, Mismatches: 16, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
7 7 0.08
9 42 0.45
10 30 0.32
11 7 0.08
12 7 0.08
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:82842696 original size:29 final size:29
Alignment explanation
Indices: 82842664--82842721 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
82842654 CTGGTTTTTC
* *
82842664 AAGTTAGTTAGTCTGTTAG-TAGTTAGCTA
1 AAGTCAGTTAGT-TGTTAGCTAGGTAGCTA
*
82842693 AAGTCAGTTTGTTGTTAGCTAGGTAGCTA
1 AAGTCAGTTAGTTGTTAGCTAGGTAGCTA
82842722 TTACTCTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.40
Consensus pattern (29 bp):
AAGTCAGTTAGTTGTTAGCTAGGTAGCTA
Found at i:82850837 original size:30 final size:30
Alignment explanation
Indices: 82850801--82850869 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
82850791 GTCACAATTA
*
82850801 ACCA-TTTCTCGTTATAGACGTAAC-GAGGCT
1 ACCATTTTCT-GTTAGAGACGTAACAGA-GCT
* *
82850831 ACCATTTTCTGTTAGATACTTAACAGAGCT
1 ACCATTTTCTGTTAGAGACGTAACAGAGCT
82850861 ACCATTTTC
1 ACCATTTTC
82850870 CATCCCCTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 27 0.79
31 7 0.21
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (30 bp):
ACCATTTTCTGTTAGAGACGTAACAGAGCT
Found at i:82852170 original size:49 final size:47
Alignment explanation
Indices: 82852074--82852179 Score: 126
Period size: 49 Copynumber: 2.3 Consensus size: 47
82852064 AAGGGACAAT
* *
82852074 GGGGGAGAGGGAAAGAATAAGAGTAGGAGGAGGGATGGTAGATAAGA
1 GGGGGAGAGGGAAAGAATAAGAGAAGGAGGAGGGATGGTAGAGAAGA
* * * *
82852121 GGGGGAGAGGGAGAGAGAATCAGAGAAGGGGGAGGGATGGTGGGGAAGA
1 GGGGGAGAGGGA-A-AGAATAAGAGAAGGAGGAGGGATGGTAGAGAAGA
82852170 --GGGAGAGGGA
1 GGGGGAGAGGGA
82852180 TGGGAGAGCA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
47 22 0.43
48 1 0.02
49 28 0.55
ACGTcount: A:0.36, C:0.01, G:0.56, T:0.08
Consensus pattern (47 bp):
GGGGGAGAGGGAAAGAATAAGAGAAGGAGGAGGGATGGTAGAGAAGA
Found at i:82852271 original size:30 final size:30
Alignment explanation
Indices: 82852200--82852271 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
82852190 GTGATAGGGG
* * *
82852200 ATGGAAAATGGCAGCTTCGTTAAGTATCTA
1 ATGGAAAATGGTAGCTCCATTAAGTATCTA
* * *
82852230 ATGGAAAATGGTAGCTCCATTACGTTTGTA
1 ATGGAAAATGGTAGCTCCATTAAGTATCTA
82852260 ATGGAAAATGGT
1 ATGGAAAATGGT
82852272 TAGTGGTGAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (30 bp):
ATGGAAAATGGTAGCTCCATTAAGTATCTA
Found at i:82861373 original size:40 final size:40
Alignment explanation
Indices: 82861313--82861496 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
82861303 TATTCGAATG
*
82861313 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCT-AGTGACT
* * *
82861354 ATATCC-GACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * * *
82861393 ATATCTGGGC-AAAAACCTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAGTGACT
* *
82861433 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
82861473 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
82861497 CTTGTGCGAG
Statistics
Matches: 119, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
39 16 0.13
40 92 0.77
41 11 0.09
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:82866461 original size:28 final size:28
Alignment explanation
Indices: 82866430--82866486 Score: 64
Period size: 28 Copynumber: 2.0 Consensus size: 28
82866420 AATTTTGATG
*
82866430 AAATCAGCTATTTG-GGG-CTAATTTGTGA
1 AAATCAG-T-TTTGAGGGACTAAATTGTGA
*
82866458 AAATGAGTTTTGAGGGACTAAATTGTGA
1 AAATCAGTTTTGAGGGACTAAATTGTGA
82866486 A
1 A
82866487 TTAAATGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
26 4 0.16
27 4 0.16
28 17 0.68
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.33
Consensus pattern (28 bp):
AAATCAGTTTTGAGGGACTAAATTGTGA
Found at i:82869095 original size:27 final size:27
Alignment explanation
Indices: 82869055--82869213 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
82869045 AGGAAACGTC
*
82869055 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
82869082 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
82869108 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
82869136 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
82869163 CTGCTGGCTCTGCTACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
82869190 CTGGTGACTCCGTCACAA-TATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
82869214 GCAGCCTCAC
Statistics
Matches: 113, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 11 0.10
27 98 0.87
28 4 0.04
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:82869134 original size:54 final size:54
Alignment explanation
Indices: 82869052--82869213 Score: 238
Period size: 54 Copynumber: 3.0 Consensus size: 54
82869042 TGGAGGAAAC
82869052 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
82869106 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * * * * *
82869160 GTTCTGCTGGCTCTGCTACAA-TATCTGTATCTGGTGACTCCGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCT
82869213 G
1 G
82869214 GCAGCCTCAC
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 13 0.13
54 87 0.87
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:82869207 original size:81 final size:80
Alignment explanation
Indices: 82869055--82869213 Score: 196
Period size: 81 Copynumber: 2.0 Consensus size: 80
82869045 AGGAAACGTC
* * *
82869055 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGCTGGCTCTGCCACATATATCTGTCCTGGTGACTAC
82869120 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * *
82869136 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGCTGGCTCTGCTACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGCTGGCTCTGCCACATATATCTGT-CCTGGTGACT
* *
82869199 CCGTCACAATATCTG
64 ACGCCACAATATCTG
82869214 GCAGCCTCAC
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
80 16 0.24
81 51 0.76
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGCTGGCTCTGCCACATATATCTGTCCTGGTGACTAC
GCCACAATATCTGAT
Found at i:82876668 original size:27 final size:27
Alignment explanation
Indices: 82876632--82876695 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
82876622 GTCTTTGAAT
82876632 TTTGATGAAATGAGCTATTTG-GGG-CTAA
1 TTTG-TGAAATGAG-T-TTTGAGGGACTAA
82876660 TTTGTGAAAATGAGTTTTGAGGGACTAA
1 TTTGTG-AAATGAGTTTTGAGGGACTAA
*
82876688 ATTGTGAA
1 TTTGTGAA
82876696 TTAAATATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
26 4 0.12
27 8 0.25
28 20 0.62
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.36
Consensus pattern (27 bp):
TTTGTGAAATGAGTTTTGAGGGACTAA
Found at i:82876670 original size:28 final size:28
Alignment explanation
Indices: 82876639--82876695 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
82876629 AATTTTGATG
*
82876639 AAATGAGCTATTTG-GGG-CTAATTTGTGA
1 AAATGAG-T-TTTGAGGGACTAAATTGTGA
82876667 AAATGAGTTTTGAGGGACTAAATTGTGA
1 AAATGAGTTTTGAGGGACTAAATTGTGA
82876695 A
1 A
82876696 TTAAATATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 4 0.15
28 18 0.69
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (28 bp):
AAATGAGTTTTGAGGGACTAAATTGTGA
Found at i:82881000 original size:40 final size:40
Alignment explanation
Indices: 82880917--82881137 Score: 243
Period size: 40 Copynumber: 5.5 Consensus size: 40
82880907 ACCCAAGTAT
** * *
82880917 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
82880955 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
82880995 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
82881035 CTTCGGGT-TTGGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTT-AGCCCGGATATAGTCACTAGCACAAATGC
* * **
82881075 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAACC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
82881116 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
82881138 CATTCGAATA
Statistics
Matches: 152, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 17 0.11
40 93 0.61
41 30 0.20
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:82890793 original size:26 final size:26
Alignment explanation
Indices: 82890764--82890817 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
82890754 CTTATTAGTG
82890764 TCCCGAT-ATACGGCTCTTCGTGAGCT
1 TCCCGATGAT-CGGCTCTTCGTGAGCT
* * *
82890790 TCCCGTTGATTGGCTCTTTGTGAGCT
1 TCCCGATGATCGGCTCTTCGTGAGCT
82890816 TC
1 TC
82890818 TTGATTAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.11, C:0.28, G:0.24, T:0.37
Consensus pattern (26 bp):
TCCCGATGATCGGCTCTTCGTGAGCT
Found at i:82890891 original size:25 final size:24
Alignment explanation
Indices: 82890825--82890893 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
82890815 TTCTTGATTA
82890825 ATGGCTCTCCGGAGCTTCCCAATAT
1 ATGGCT-TCCGGAGCTTCCCAATAT
** *
82890850 -TGGCTTGCTTGAACTTCCCAATAT
1 ATGGCTT-CCGGAGCTTCCCAATAT
82890874 ATGGCTATCCGGAGCTTCCC
1 ATGGCT-TCCGGAGCTTCCC
82890894 GTTAATGGCT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
23 1 0.03
24 19 0.54
25 14 0.40
26 1 0.03
ACGTcount: A:0.19, C:0.30, G:0.20, T:0.30
Consensus pattern (24 bp):
ATGGCTTCCGGAGCTTCCCAATAT
Found at i:82890910 original size:24 final size:24
Alignment explanation
Indices: 82890775--82890913 Score: 73
Period size: 24 Copynumber: 5.6 Consensus size: 24
82890765 CCCGATATAC
* *
82890775 GGCTCTTCGTGAGCTTCCCGTTGATT
1 GGCTCTCCG-GAGCTTCCCGTT-AAT
** **
82890801 GGCTCTTTGTGAGCTTCTTGATTAAT
1 GGCTCTCCG-GAGCTTCCCG-TTAAT
** *
82890827 GGCTCTCCGGAGCTTCCCAATATT
1 GGCTCTCCGGAGCTTCCCGTTAAT
** * **
82890851 GGCT-TGCTTGAACTTCCCAATATAT
1 GGCTCT-CCGGAGCTTCCCGTTA-AT
*
82890876 GGCTATCCGGAGCTTCCCGTTAAT
1 GGCTCTCCGGAGCTTCCCGTTAAT
*
82890900 GGCTCTACGGAGCT
1 GGCTCTCCGGAGCT
82890914 ACTTGTTATT
Statistics
Matches: 87, Mismatches: 22, Indels: 10
0.73 0.18 0.08
Matches are distributed among these distances:
23 1 0.01
24 34 0.39
25 23 0.26
26 27 0.31
27 2 0.02
ACGTcount: A:0.16, C:0.26, G:0.24, T:0.35
Consensus pattern (24 bp):
GGCTCTCCGGAGCTTCCCGTTAAT
Found at i:82891370 original size:17 final size:17
Alignment explanation
Indices: 82891326--82891371 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 17
82891316 GAAATACATG
*
82891326 GAAATG-ATGGTAT-AT
1 GAAATGAATGATATAAT
*
82891341 GAAAT-ATTGATATAAT
1 GAAATGAATGATATAAT
82891357 GAAATGAATGATATA
1 GAAATGAATGATATA
82891372 TGTTTATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 10 0.40
16 7 0.28
17 8 0.32
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.33
Consensus pattern (17 bp):
GAAATGAATGATATAAT
Found at i:82897548 original size:48 final size:48
Alignment explanation
Indices: 82897496--82897694 Score: 146
Period size: 48 Copynumber: 4.2 Consensus size: 48
82897486 TATGGTGTCA
82897496 GCATCGATATATGATCCCATGTAAGACCATGTCTAGGACATGGCATTG
1 GCATCGATATATGATCCCATGTAAGACCATGTCTAGGACATGGCATTG
* * ** * *
82897544 GCATCGTTATGTGATCCCAAATAAGACCATGTTTGGGACATGGCATTG
1 GCATCGATATATGATCCCATGTAAGACCATGTCTAGGACATGGCATTG
* * * * *
82897592 ACATCGATGTGA-GAACATCGTGTAAGACCATAG-CTAGG-CTATCGGC-TTCG
1 GCATCGATAT-ATGATC-CCATGTAAGACCAT-GTCTAGGAC-AT-GGCATT-G
* * *
82897642 G--T--ATGTGTGATCCCATGTAAGACCATGTCT-GAGACATGGCATTA
1 GCATCGATATATGATCCCATGTAAGACCATGTCTAG-GACATGGCATTG
82897686 GCATCGATA
1 GCATCGATA
82897695 AGTGGTCCCA
Statistics
Matches: 112, Mismatches: 24, Indels: 30
0.67 0.14 0.18
Matches are distributed among these distances:
44 6 0.05
45 19 0.17
46 9 0.08
48 56 0.50
49 17 0.15
50 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (48 bp):
GCATCGATATATGATCCCATGTAAGACCATGTCTAGGACATGGCATTG
Found at i:82900481 original size:25 final size:25
Alignment explanation
Indices: 82900421--82900482 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 25
82900411 GTAGTAAGTC
*
82900421 ACCTATAAAGCCTTTGTGATGATTT
1 ACCTATAAAGCCTTTGTGATGAGTT
* *** * *
82900446 ACATGGGAAGCTTTTGTGGTGAGTT
1 ACCTATAAAGCCTTTGTGATGAGTT
82900471 ACCTATAAAGCC
1 ACCTATAAAGCC
82900483 ATTCTGGTGA
Statistics
Matches: 25, Mismatches: 12, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (25 bp):
ACCTATAAAGCCTTTGTGATGAGTT
Found at i:82900560 original size:25 final size:25
Alignment explanation
Indices: 82900532--82900579 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82900522 TTTGGTAAGC
* *
82900532 CTTTGTGGCAGGTTATCTGTAAATT
1 CTTTGTGGCAAGTTACCTGTAAATT
*
82900557 CTTTGTGGTAAGTTACCTGTAAA
1 CTTTGTGGCAAGTTACCTGTAAA
82900580 GACTATGTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42
Consensus pattern (25 bp):
CTTTGTGGCAAGTTACCTGTAAATT
Found at i:82906832 original size:55 final size:55
Alignment explanation
Indices: 82906699--82906841 Score: 169
Period size: 55 Copynumber: 2.6 Consensus size: 55
82906689 TATGAAGGGC
* * * ** *
82906699 CACGCCTGTGTTGTTTCGGCAGGTTCGGCCACGGTTGCTTGGCACGGGCGTGTAG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGGCCACGCTTGCAAGGCACGGGAGTGTAG
** * * *
82906754 CACGCCCGTGTTAATTTGACAGGTTCGGCCACGCTTTCAAGGCACGGGAGTGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGGCCACGCTTGCAAGGCACGGGAGTGTAG
* *
82906809 CACGCCCGTGTTGTTTTGGCAGGTACGCCCACG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGGCCACG
82906842 GCCATGTCGC
Statistics
Matches: 72, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 72 1.00
ACGTcount: A:0.13, C:0.28, G:0.34, T:0.25
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTGGCAGGTTCGGCCACGCTTGCAAGGCACGGGAGTGTAG
Found at i:82908781 original size:36 final size:36
Alignment explanation
Indices: 82908734--82908804 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
82908724 GGTTGAAGGG
82908734 TTAATACTCTGTGCATGCTCCTCCTCCATTCGAATT
1 TTAATACTCTGTGCATGCTCCTCCTCCATTCGAATT
82908770 TTAATACTCTGTGCATGCTCCTCCTCCATTCGAAT
1 TTAATACTCTGTGCATGCTCCTCCTCCATTCGAAT
82908805 CGCACCTCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.20, C:0.31, G:0.11, T:0.38
Consensus pattern (36 bp):
TTAATACTCTGTGCATGCTCCTCCTCCATTCGAATT
Found at i:82911226 original size:20 final size:19
Alignment explanation
Indices: 82911188--82911226 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
82911178 GAACAAAAGG
* *
82911188 TAATTAAATAATATTATTT
1 TAATTAAAAAATATAATTT
82911207 TAATTGAAAAAATATAATTT
1 TAATT-AAAAAATATAATTT
82911227 CCTTGCTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATTAAAAAATATAATTT
Found at i:82917749 original size:3 final size:3
Alignment explanation
Indices: 82917741--82917770 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
82917731 AGTTCGTGTG
82917741 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
82917771 CAATGTCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:82918268 original size:48 final size:48
Alignment explanation
Indices: 82918197--82918323 Score: 175
Period size: 48 Copynumber: 2.6 Consensus size: 48
82918187 ATGAGATCCC
* * *
82918197 GTGTAAGACCATGTCTGGGACATGGCGTCGGTGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGTGATGATATGTGTGCCA
* * **
82918245 GTGTAAGATCATGTCTGGAACATGGCATCAGTGATGATATGTGTGTTA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGTGATGATATGTGTGCCA
82918293 GTGTAAGACCATGTCT-GAGACATGGCATCGG
1 GTGTAAGACCATGTCTGGA-ACATGGCATCGG
82918324 CACCGATTTG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 2 0.03
48 67 0.97
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.29
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGAACATGGCATCGGTGATGATATGTGTGCCA
Found at i:82924216 original size:4 final size:4
Alignment explanation
Indices: 82924197--82924239 Score: 68
Period size: 4 Copynumber: 10.2 Consensus size: 4
82924187 TTTTTGTCTA
82924197 AGTT AAGTT AAGTT AGTT AGTT AGTT AGTT AGTT AGTT AGTT A
1 AGTT -AGTT -AGTT AGTT AGTT AGTT AGTT AGTT AGTT AGTT A
82924240 AATCTACTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 29 0.76
5 9 0.24
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (4 bp):
AGTT
Found at i:82924743 original size:19 final size:19
Alignment explanation
Indices: 82924721--82924762 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
82924711 TAATTTGTCT
82924721 CAATTA-GTAAAATTGAGAC
1 CAATTAGGTAAAATTGAG-C
82924740 CAA-TAGGTAAAATTGAGC
1 CAATTAGGTAAAATTGAGC
82924758 CAATT
1 CAATT
82924763 TAGGAGTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.26
Consensus pattern (19 bp):
CAATTAGGTAAAATTGAGC
Found at i:82945205 original size:38 final size:38
Alignment explanation
Indices: 82945154--82945232 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
82945144 TAACTTGAAC
82945154 AAGGTGGTTATTATTGTTTAAAAAAAATAGAAAAGTTA
1 AAGGTGGTTATTATTGTTTAAAAAAAATAGAAAAGTTA
82945192 AAGGTGGTTATTATTGTTTAAAAAAAATAGAAAAGTTA
1 AAGGTGGTTATTATTGTTTAAAAAAAATAGAAAAGTTA
82945230 AAG
1 AAG
82945233 TTTTAAACTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.33
Consensus pattern (38 bp):
AAGGTGGTTATTATTGTTTAAAAAAAATAGAAAAGTTA
Found at i:82950067 original size:6 final size:6
Alignment explanation
Indices: 82950056--82950116 Score: 104
Period size: 6 Copynumber: 9.8 Consensus size: 6
82950046 TTAAAATAAT
82950056 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA GTTTTAA GTTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA -TTTTAA -TTTTAA
82950106 TTTTAA TTTTA
1 TTTTAA TTTTA
82950117 GGAATAAAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
6 41 0.76
7 13 0.24
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (6 bp):
TTTTAA
Found at i:82950129 original size:26 final size:26
Alignment explanation
Indices: 82950072--82950131 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
82950062 TTTTAATTTT
** *
82950072 AATTTTAATTTTAATTTTAAGTTTTA
1 AATTTTAATTTTAATTTTAAGAATAA
* *
82950098 AGTTTTAATTTTAATTTTAGGAATAA
1 AATTTTAATTTTAATTTTAAGAATAA
82950124 AATTTTAA
1 AATTTTAA
82950132 ATAATTTTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (26 bp):
AATTTTAATTTTAATTTTAAGAATAA
Found at i:82953910 original size:34 final size:34
Alignment explanation
Indices: 82953862--82953933 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
82953852 GCATTTCTGT
*
82953862 TACTGTTACTATAATGCGCTAAGGCCC-ACACTGA
1 TACTATTACTATAATGCGCTAAGGCCCTA-ACTGA
* *
82953896 TACTATTACTATAATGGGCTATGGCCCTAACTGA
1 TACTATTACTATAATGCGCTAAGGCCCTAACTGA
82953930 TACT
1 TACT
82953934 GGACTATCAC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 33 0.97
35 1 0.03
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (34 bp):
TACTATTACTATAATGCGCTAAGGCCCTAACTGA
Found at i:82954785 original size:54 final size:55
Alignment explanation
Indices: 82954716--82954840 Score: 155
Period size: 54 Copynumber: 2.3 Consensus size: 55
82954706 CGTCCTCAGC
* * * * * *
82954716 CCGTGTGCAACACTGACTTCTGGGCACGGCCAT-GACACATGCCCGTGTGGCCT-A
1 CCGTGGGCAATACTGACTTATAGACACGGCCATAG-CACACGCCCGTGTGGCCTAA
*
82954770 CCGTGGGCAATACTGACTTATAGACACGGCTATAGCACACGCCCGTGTGGCCTAA
1 CCGTGGGCAATACTGACTTATAGACACGGCCATAGCACACGCCCGTGTGGCCTAA
*
82954825 CCGTGGACAATACTGA
1 CCGTGGGCAATACTGA
82954841 TTTAAAAGTT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
54 44 0.72
55 17 0.28
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (55 bp):
CCGTGGGCAATACTGACTTATAGACACGGCCATAGCACACGCCCGTGTGGCCTAA
Found at i:82955700 original size:49 final size:49
Alignment explanation
Indices: 82955595--82955960 Score: 183
Period size: 47 Copynumber: 7.7 Consensus size: 49
82955585 AAGTTGTTGC
*
82955595 TGCCATGTCCCAGACATGGTCTTACACTAGCTTTCTCCATCGAGGCCAA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTCCATCGAGGCCAA
* * ** * *
82955644 TGCCATGTCCTAGACATGGTTTTACACTAGCTCTCGTGTATACG-TGCTAA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TCCAT-CGAGGCCAA
* **** * *
82955694 TG-CATGTCCCAGACAAT-GTCTTACACTAGCACGAAAC-T-TA-GCCGA
1 TGCCATGTCCCAGAC-ATGGTCTTACACTAGCTCTCTCCATCGAGGCCAA
* * * **
82955739 TG-CATGTCCTAGACA-CGTCTTACACTCGCTAACAT-CATCGAGGCCAA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TCCATCGAGGCCAA
* * * * * *
82955786 TG-CATGTCCCAGACAT-GTCTTACACTGGCACTCACC-TCTACGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTCCATCGAGGCCAA
* ** * * * **
82955832 TGCCATGTCCCATACATGGTCTTACACGGGCTATCAT-GAT-GCGGCTGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TCCATCGAGGCCAA
* * * * * *
82955880 TG-CATGTCCTAGACAT-GTCTTACAATAGCCCTCGT-C-TCAATGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TCCATCGAGGCCAA
* *
82955926 TGCCATGTCCCAGACATGGTCTTATACTGGCTCTC
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTC
82955961 ACATAACCCC
Statistics
Matches: 235, Mismatches: 64, Indels: 37
0.70 0.19 0.11
Matches are distributed among these distances:
44 14 0.06
45 18 0.08
46 29 0.12
47 71 0.30
48 33 0.14
49 57 0.24
50 11 0.05
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTCCATCGAGGCCAA
Found at i:82955839 original size:94 final size:93
Alignment explanation
Indices: 82955692--82955949 Score: 270
Period size: 94 Copynumber: 2.8 Consensus size: 93
82955682 TATACGTGCT
** *
82955692 AATGCATGTCCCAGACAATGTCTTACACTAGCACGAAACT-TAGCCGATG-CATGTCCTAGACA-
1 AATGCATGTCCCAGAC-ATGTCTTACACTAGCACTCAACTCTAGCCGATGCCATGTCCCAGACAT
*
82955754 CGTCTTACACTCGCTAACATCATCGAGGCC
65 CGTCTTACACGCGCTAACATCAT-GAGGCC
* * *
82955784 AATGCATGTCCCAGACATGTCTTACACTGGCACTCACCTCTACGCCGATGCCATGTCCCATACAT
1 AATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTA-GCCGATGCCATGTCCCAGACAT
* * * * * *
82955849 GGTCTTACACGGGCTATCATGATGCGGCT
65 CGTCTTACACGCGCTAACATCATGAGGCC
* * * * ** *
82955878 GATGCATGTCCTAGACATGTCTTACAATAGCCCTCGTCTCAATGCCGATGCCATGTCCCAGACAT
1 AATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTA-GCCGATGCCATGTCCCAGACAT
*
82955943 GGTCTTA
65 CGTCTTA
82955950 TACTGGCTCT
Statistics
Matches: 139, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
91 19 0.14
92 18 0.13
93 7 0.05
94 77 0.55
95 18 0.13
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (93 bp):
AATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTAGCCGATGCCATGTCCCAGACATC
GTCTTACACGCGCTAACATCATGAGGCC
Found at i:82959801 original size:27 final size:28
Alignment explanation
Indices: 82959770--82959823 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
82959760 CGTGGCTAAC
82959770 TATAA-ATAAATAACCTATGTGA-AAAAT
1 TATAACAT-AATAACCTATGTGACAAAAT
* *
82959797 TATAACATGATAACCTTTGTGACAAAA
1 TATAACATAATAACCTATGTGACAAAA
82959824 ACTAAAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.30
Consensus pattern (28 bp):
TATAACATAATAACCTATGTGACAAAAT
Found at i:82960260 original size:13 final size:13
Alignment explanation
Indices: 82960241--82960279 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
82960231 CAATACAAAA
82960241 TGGTTATATGAAT
1 TGGTTATATGAAT
*
82960254 TGTTTATATGGAA-
1 TGGTTATAT-GAAT
82960267 TGGTTATATGAAT
1 TGGTTATATGAAT
82960280 CAATTATACA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 3 0.14
13 16 0.73
14 3 0.14
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (13 bp):
TGGTTATATGAAT
Found at i:82962876 original size:15 final size:17
Alignment explanation
Indices: 82962856--82962888 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
82962846 CGAACCCTAG
82962856 CTTTCTT-TTTAT-TTT
1 CTTTCTTGTTTATGTTT
82962871 CTTTCTTGTTTATGTTT
1 CTTTCTTGTTTATGTTT
82962888 C
1 C
82962889 GGAAATAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.06, C:0.15, G:0.06, T:0.73
Consensus pattern (17 bp):
CTTTCTTGTTTATGTTT
Found at i:82967804 original size:35 final size:35
Alignment explanation
Indices: 82967758--82967828 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
82967748 GTTTATCAAC
82967758 ATTTCCTCAGATGGCATCTAGAGTTGGTGATGCAT
1 ATTTCCTCAGATGGCATCTAGAGTTGGTGATGCAT
82967793 ATTTCCTCAGATGGCATCTAGAGTTGGTGATGCAT
1 ATTTCCTCAGATGGCATCTAGAGTTGGTGATGCAT
82967828 A
1 A
82967829 GTCACTTAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (35 bp):
ATTTCCTCAGATGGCATCTAGAGTTGGTGATGCAT
Found at i:82969306 original size:41 final size:41
Alignment explanation
Indices: 82969224--82969306 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
82969214 AGCGGCTTGA
* *
82969224 GAAGTTTGTTTGATACTCGTCCCTTGATCTTACATCTATTG
1 GAAGTTTGTTTGATACTCGTCCCTTGATCCTACATCCATTG
*
82969265 GAAGTTTGTTTGATACTCGTCCCTTGATCCTACGTCCATTG
1 GAAGTTTGTTTGATACTCGTCCCTTGATCCTACATCCATTG
82969306 G
1 G
82969307 GCCTGAAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.18, C:0.22, G:0.19, T:0.41
Consensus pattern (41 bp):
GAAGTTTGTTTGATACTCGTCCCTTGATCCTACATCCATTG
Found at i:82971085 original size:42 final size:43
Alignment explanation
Indices: 82970981--82971087 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 43
82970971 CAATGCCAAC
* * *
82970981 GTCCCAGACGTGGTCTTACATGTAATCAAATATCAATGTCACT
1 GTCCCAGACATAGTCTTACATGAAATCAAATATCAATGTCACT
* *
82971024 GTCCCAAACA-AGGTCTTACATGAAATCAAATA-CGATGTCGA-T
1 GTCCCAGACATA-GTCTTACATGAAATCAAATATCAATGTC-ACT
*
82971066 GTCCCAGACATAGTTTTACATG
1 GTCCCAGACATAGTCTTACATG
82971088 TCAATCTCAA
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
42 25 0.46
43 29 0.54
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATAGTCTTACATGAAATCAAATATCAATGTCACT
Found at i:82974562 original size:28 final size:28
Alignment explanation
Indices: 82974529--82974584 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
82974519 CAATCAAATG
82974529 TGCAAAATGGCCAAGATGAAAAATGTTT
1 TGCAAAATGGCCAAGATGAAAAATGTTT
82974557 TGCAAAATGGCCAAGATGAAAAATGTTT
1 TGCAAAATGGCCAAGATGAAAAATGTTT
82974585 ACTTATTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.25
Consensus pattern (28 bp):
TGCAAAATGGCCAAGATGAAAAATGTTT
Found at i:82976432 original size:20 final size:19
Alignment explanation
Indices: 82976401--82976450 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
82976391 GAAACGATTA
* *
82976401 ATATATATAAACATACTAT
1 ATATATAAAAACATAATAT
*
82976420 ATGATATAAAAACTTAATAT
1 AT-ATATAAAAACATAATAT
*
82976440 ATTTATAAAAA
1 ATATATAAAAA
82976451 TAATAATATG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATATAAAAACATAATAT
Found at i:82976439 original size:18 final size:19
Alignment explanation
Indices: 82976398--82976441 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
82976388 TTAGAAACGA
82976398 TTAATATATATAAACATAC
1 TTAATATATATAAACATAC
82976417 -T-ATATGATATAAA-A-AC
1 TTAATAT-ATATAAACATAC
82976433 TTAATATAT
1 TTAATATAT
82976442 TTATAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 8
0.73 0.00 0.27
Matches are distributed among these distances:
16 2 0.09
17 8 0.36
18 12 0.55
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.39
Consensus pattern (19 bp):
TTAATATATATAAACATAC
Found at i:82976592 original size:7 final size:7
Alignment explanation
Indices: 82976580--82976614 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
82976570 TTATATGTAC
82976580 TAATAAA
1 TAATAAA
82976587 TAATAAA
1 TAATAAA
82976594 TAATAAA
1 TAATAAA
*
82976601 TAATATA
1 TAATAAA
82976608 TAATAAA
1 TAATAAA
82976615 ATGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:82976679 original size:13 final size:13
Alignment explanation
Indices: 82976655--82976688 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
82976645 AAAATATATA
82976655 ATATACAATAAAAT
1 ATATA-AATAAAAT
*
82976669 CTATAAATAAAAT
1 ATATAAATAAAAT
82976682 ATATAAA
1 ATATAAA
82976689 ATATAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (13 bp):
ATATAAATAAAAT
Found at i:82976707 original size:32 final size:32
Alignment explanation
Indices: 82976642--82976710 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
82976632 AATAATATAT
*
82976642 AATAAAATATATAATATACAATAAAATCTATA
1 AATAAAATATATAATATACAATAAAATCGATA
*
82976674 AATAAAATATATAAAATATA-AATAACAT-GATA
1 AATAAAATATAT--AATATACAATAAAATCGATA
82976706 AATAA
1 AATAA
82976711 TACATAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 20 0.61
33 7 0.21
34 6 0.18
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.29
Consensus pattern (32 bp):
AATAAAATATATAATATACAATAAAATCGATA
Found at i:82976722 original size:47 final size:50
Alignment explanation
Indices: 82976671--82976790 Score: 115
Period size: 47 Copynumber: 2.4 Consensus size: 50
82976661 AATAAAATCT
82976671 ATAAATAAAATATATAAAATATAAATAACATG-ATAAATAATA-CAT-AA
1 ATAAATAAAATATATAAAATATAAATAACATGTATAAATAATATCATAAA
* * ** * *
82976718 ATAAA-AATATTATATATAATA-ATTTTACATGTATAAATAATATTTATAAAA
1 ATAAATAA-AATATATAAAATATAAATAACATGTATAAATAATA-TCAT-AAA
*
82976769 ATAAATAATATATATAAAATAT
1 ATAAATAAAATATATAAAATAT
82976791 TTAAAATAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
46 9 0.16
47 26 0.46
49 2 0.04
51 17 0.30
52 2 0.04
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (50 bp):
ATAAATAAAATATATAAAATATAAATAACATGTATAAATAATATCATAAA
Found at i:82976785 original size:9 final size:9
Alignment explanation
Indices: 82976749--82976882 Score: 65
Period size: 9 Copynumber: 14.7 Consensus size: 9
82976739 ATTTTACATG
*
82976749 TATAAATAA
1 TATATATAA
*
82976758 TATTTATAAA
1 TATATAT-AA
* *
82976768 AATAAATAA
1 TATATATAA
82976777 TATATATAA
1 TATATATAA
* *
82976786 AATATTTAA
1 TATATATAA
* *
82976795 AATAAATAA
1 TATATATAA
82976804 TATATATAA
1 TATATATAA
* *
82976813 AATATTTAA
1 TATATATAA
* *
82976822 AATAAATAA
1 TATATATAA
82976831 TATATAT-A
1 TATATATAA
*
82976839 TAATATTTAA
1 T-ATATATAA
* *
82976849 AATAAATAAA
1 TATATAT-AA
82976859 TTATATATAA
1 -TATATATAA
* *
82976869 AATGTAT-A
1 TATATATAA
82976877 TATATA
1 TATATA
82976883 AAAGGATTAA
Statistics
Matches: 91, Mismatches: 29, Indels: 11
0.69 0.22 0.08
Matches are distributed among these distances:
8 7 0.08
9 68 0.75
10 11 0.12
11 5 0.05
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (9 bp):
TATATATAA
Found at i:82976789 original size:18 final size:18
Alignment explanation
Indices: 82976750--82976843 Score: 89
Period size: 18 Copynumber: 5.2 Consensus size: 18
82976740 TTTTACATGT
*
82976750 ATAAATAATATTTATAAAA
1 ATAAATAATATATAT-AAA
82976769 ATAAATAATATATATAAA
1 ATAAATAATATATATAAA
** * * *
82976787 ATATTTAAAATAAATAAT
1 ATAAATAATATATATAAA
* * *
82976805 ATATATAAAATATTTAAA
1 ATAAATAATATATATAAA
*
82976823 ATAAATAATATATATATA
1 ATAAATAATATATATAAA
82976841 ATA
1 ATA
82976844 TTTAAAATAA
Statistics
Matches: 61, Mismatches: 14, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
18 47 0.77
19 14 0.23
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAAATAATATATATAAA
Found at i:82976804 original size:27 final size:27
Alignment explanation
Indices: 82976766--82976871 Score: 185
Period size: 27 Copynumber: 3.9 Consensus size: 27
82976756 AATATTTATA
82976766 AAAATAAATAATATATATAAAATATTT
1 AAAATAAATAATATATATAAAATATTT
82976793 AAAATAAATAATATATATAAAATATTT
1 AAAATAAATAATATATATAAAATATTT
*
82976820 AAAATAAATAATATATATATAATATTT
1 AAAATAAATAATATATATAAAATATTT
82976847 AAAATAAATAAATTATATATAAAAT
1 AAAATAAAT-AA-TATATATAAAAT
82976872 GTATATATAT
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
27 62 0.83
28 2 0.03
29 11 0.15
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (27 bp):
AAAATAAATAATATATATAAAATATTT
Found at i:82978529 original size:45 final size:45
Alignment explanation
Indices: 82978307--82978656 Score: 169
Period size: 45 Copynumber: 7.8 Consensus size: 45
82978297 AATATTCTTA
** * *
82978307 ATCTGCTCCCTGTCAAATACAGAGATGCCAAATCTGTCATTTTCG
1 ATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGTCATCTTCG
* *** * * * * * *
82978352 ATCTACT-TTGATGCAAACACA-AGAATGTCAGATCTGTTATCTTTG
1 ATCTGCTCCCCAT-CTAATACAGAG-ATGCCAAATCTGTCATCTTCG
* ** * * *
82978397 ATTTGCTCCCTGTCTAATACAGAGACGCCAAACCTGTCATTTTCG
1 ATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGTCATCTTCG
* * * * * * *
82978442 ATCTGCT-TCGATGTAA-ACACACGAATGTCAGATCT-ACTATCTTCG
1 ATCTGCTCCCCATCTAATACAGA-G-ATGCCAAATCTGTC-ATCTTCG
* *
82978487 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTCATCTTTG
1 ATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGTCATCTTCG
* * * * ** *
82978532 ATCTGCT-TCGATGTAA-ACACACGAATTTCAGATCTG-CTATCTTCG
1 ATCTGCTCCCCATCTAATACAGA-G-ATGCCAAATCTGTC-ATCTTCG
* * *
82978577 ATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGTCATCTCCG
1 ATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGTCATCTTCG
* * ** *
82978622 ATTTGTTCCCTGTC-AATACAGAGATGGCAAATCTG
1 ATCTGCTCCCCATCTAATACAGAGATGCCAAATCTG
82978657 CTATCTACAT
Statistics
Matches: 219, Mismatches: 70, Indels: 33
0.68 0.22 0.10
Matches are distributed among these distances:
43 8 0.04
44 38 0.17
45 147 0.67
46 18 0.08
47 8 0.04
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGCTCCCCATCTAATACAGAGATGCCAAATCTGTCATCTTCG
Found at i:82978618 original size:90 final size:90
Alignment explanation
Indices: 82978307--82978616 Score: 453
Period size: 90 Copynumber: 3.4 Consensus size: 90
82978297 AATATTCTTA
* * * * *
82978307 ATCTGCTCCCTGTCAAATACAGAGATGCCAAATCTGTCATTTTCGATCTACTTTGATGCAAACAC
1 ATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCGATGTAAACAC
* * *
82978372 AAGAATGTCAGATCTGTTATCTTTG
66 ACGAATGTCAGATCTGCTATCTTCG
* *
82978397 ATTTGCTCCCTGTCTAATACAGAGACGCCAAACCTGTCATTTTCGATCTGCTTCGATGTAAACAC
1 ATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCGATGTAAACAC
*
82978462 ACGAATGTCAGATCTACTATCTTCG
66 ACGAATGTCAGATCTGCTATCTTCG
**
82978487 ATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTCATCTTT-GATCTGCTTCGATGTAAACA
1 ATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTCAT-TTTCGATCTGCTTCGATGTAAACA
*
82978551 CACGAATTTCAGATCTGCTATCTTCG
65 CACGAATGTCAGATCTGCTATCTTCG
*
82978577 ATCTGCTTCCC-GTCTAATACAGAGATGCCAAATCTGTCAT
1 ATCTGC-TCCCTGTCTAATACAGAGACGCCAAATCTGTCAT
82978617 CTCCGATTTG
Statistics
Matches: 199, Mismatches: 19, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
90 192 0.96
91 7 0.04
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (90 bp):
ATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTCATTTTCGATCTGCTTCGATGTAAACAC
ACGAATGTCAGATCTGCTATCTTCG
Found at i:82989561 original size:71 final size:64
Alignment explanation
Indices: 82989413--82989562 Score: 167
Period size: 71 Copynumber: 2.2 Consensus size: 64
82989403 ACTTCAACAA
** * *
82989413 TTCATGCAAATATAATATAGAAAATGATAAATAACGACATAAATTACATAATATACATTATCAT
1 TTCATGCAAATATAATATAGAAAACAATAAATAACAACATAAATTACATAATATACATAATCAT
* *
82989477 TTCATGCAGATATAATCATAGAAAACAATGAATATAACAATATAAATTACATAATATATATACAA
1 TTCATGCAAATATAAT-ATAGAAAACAAT-AA-ATAACAACATAAATTAC---ATA-ATATAC-A
82989542 TAAT-AT
58 TAATCAT
82989548 TTCATGCAAATATAA
1 TTCATGCAAATATAA
82989563 CTTAAAATAA
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
64 15 0.21
65 10 0.14
66 2 0.03
67 15 0.21
70 3 0.04
71 22 0.31
72 4 0.06
ACGTcount: A:0.52, C:0.11, G:0.06, T:0.31
Consensus pattern (64 bp):
TTCATGCAAATATAATATAGAAAACAATAAATAACAACATAAATTACATAATATACATAATCAT
Found at i:82989877 original size:19 final size:18
Alignment explanation
Indices: 82989833--82989898 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
82989823 TTAGAAACGA
82989833 TTAATATATATATAAAAC
1 TTAATATATATATAAAAC
* *
82989851 ATACTATATGATATAAAAC
1 TTAATATAT-ATATAAAAC
*
82989870 TTAATATATTTATAAAA-
1 TTAATATATATATAAAAC
*
82989887 ATAATA-ATATAT
1 TTAATATATATAT
82989899 TAAATAGGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
16 5 0.12
17 5 0.12
18 14 0.35
19 16 0.40
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (18 bp):
TTAATATATATATAAAAC
Found at i:82990036 original size:8 final size:8
Alignment explanation
Indices: 82990023--82990056 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
82990013 TGTACTAATA
82990023 AATAAAAT
1 AATAAAAT
82990031 AAT-AAAT
1 AATAAAAT
82990038 AATAAAAT
1 AATAAAAT
82990046 AATATAAAT
1 AATA-AAAT
82990055 AA
1 AA
82990057 AATGAAGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 7 0.29
8 11 0.46
9 6 0.25
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
AATAAAAT
Found at i:82990067 original size:15 final size:14
Alignment explanation
Indices: 82990020--82990140 Score: 66
Period size: 15 Copynumber: 7.9 Consensus size: 14
82990010 ATATGTACTA
82990020 ATAAATAAAATAAT
1 ATAAATAAAATAAT
*
82990034 AAATAATAAAATAAT
1 ATA-AATAAAATAAT
*
82990049 ATAAATAAAATGAAG
1 ATAAATAAAAT-AAT
*
82990064 ATAATATAGGGAATAAT
1 ATAA-ATA--AAATAAT
82990081 ATATAATAAATATATAAT
1 ATA-AAT-AA-A-ATAAT
**
82990099 ATATAATAAAA-GCT
1 ATA-AATAAAATAAT
*
82990113 ATATATAAAAT-AT
1 ATAAATAAAATAAT
82990126 ATAAAATATAAATAA
1 AT-AAATA-AAATAA
82990141 CATGATAAAT
Statistics
Matches: 83, Mismatches: 11, Indels: 24
0.70 0.09 0.20
Matches are distributed among these distances:
13 9 0.11
14 18 0.22
15 24 0.29
16 5 0.06
17 10 0.12
18 17 0.20
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (14 bp):
ATAAATAAAATAAT
Found at i:82990099 original size:18 final size:18
Alignment explanation
Indices: 82990076--82990181 Score: 76
Period size: 18 Copynumber: 5.8 Consensus size: 18
82990066 AATATAGGGA
82990076 ATAATATATAATAAATAT
1 ATAATATATAATAAATAT
*
82990094 ATAATATATAATAAA-AG
1 ATAATATATAATAAATAT
*
82990111 CT-ATATAT-A-AAATAT
1 ATAATATATAATAAATAT
*
82990126 ATAAAATATAAATAACATGAT
1 ATAATATAT-AATAA-AT-AT
* *
82990147 AAATAATACATAAATAAAAAT
1 --ATAATATAT-AATAAATAT
*
82990168 ATTATATATAATAA
1 ATAATATATAATAA
82990182 TTTTACATGT
Statistics
Matches: 69, Mismatches: 10, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
14 3 0.04
15 3 0.04
16 11 0.16
17 2 0.03
18 21 0.30
19 9 0.13
20 2 0.03
21 4 0.06
22 1 0.01
23 13 0.19
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (18 bp):
ATAATATATAATAAATAT
Found at i:82990140 original size:11 final size:11
Alignment explanation
Indices: 82990020--82990165 Score: 57
Period size: 11 Copynumber: 13.9 Consensus size: 11
82990010 ATATGTACTA
82990020 ATAAATAAAAT
1 ATAAATAAAAT
82990031 AATAAAT--AAT
1 -ATAAATAAAAT
82990041 A-AAAT--AAT
1 ATAAATAAAAT
82990049 ATAAATAAAAT
1 ATAAATAAAAT
* *
82990060 GA-AGATAATAT
1 -ATAAATAAAAT
** *
82990071 AGGGAATAATAT
1 A-TAAATAAAAT
82990083 AT-AAT-AAAT
1 ATAAATAAAAT
*
82990092 AT--ATAATAT
1 ATAAATAAAAT
82990101 AT-AATAAAAGCT
1 ATAAATAAAA--T
*
82990113 ATATATAAAAT
1 ATAAATAAAAT
82990124 AT--ATAAAAT
1 ATAAATAAAAT
*
82990133 ATAAATAACAT
1 ATAAATAAAAT
* *
82990144 GATAAATAATAC
1 -ATAAATAAAAT
82990156 ATAAATAAAA
1 ATAAATAAAA
82990166 ATATTATATA
Statistics
Matches: 107, Mismatches: 13, Indels: 29
0.72 0.09 0.19
Matches are distributed among these distances:
8 10 0.09
9 24 0.22
10 12 0.11
11 28 0.26
12 27 0.25
13 6 0.06
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (11 bp):
ATAAATAAAAT
Found at i:82990178 original size:15 final size:15
Alignment explanation
Indices: 82990160--82990272 Score: 61
Period size: 15 Copynumber: 7.4 Consensus size: 15
82990150 TAATACATAA
82990160 ATAAAAATATTATAT
1 ATAAAAATATTATAT
* * *
82990175 ATAATAATTTTACAT
1 ATAAAAATATTATAT
* * * *
82990190 GTATAAATAATATTT
1 ATAAAAATATTATAT
*
82990205 ATAAAAATAAATAATAT
1 ATAAAAAT--ATTATAT
* *
82990222 ATATAAAATTTTA-AA
1 ATA-AAAATATTATAT
82990237 ATAAATAA-ATTATAT
1 ATAAA-AATATTATAT
*
82990252 AT-AAAATGTATATAT
1 ATAAAAATAT-TATAT
82990267 ATAAAA
1 ATAAAA
82990273 GGATTAAAAT
Statistics
Matches: 69, Mismatches: 21, Indels: 15
0.66 0.20 0.14
Matches are distributed among these distances:
13 2 0.03
14 8 0.12
15 42 0.61
16 5 0.07
17 7 0.10
18 5 0.07
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (15 bp):
ATAAAAATATTATAT
Found at i:82990180 original size:29 final size:30
Alignment explanation
Indices: 82990112--82990182 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 30
82990102 TAATAAAAGC
* *
82990112 TATATATAA-AATATATAAAATATAAATAA
1 TATATATAATAATACATAAAATAAAAATAA
* *
82990141 CATGATA-AATAATACAT-AAATAAAAATAT
1 TAT-ATATAATAATACATAAAATAAAAATAA
82990170 TATATATAATAAT
1 TATATATAATAAT
82990183 TTTACATGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
28 3 0.09
29 22 0.65
30 9 0.26
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (30 bp):
TATATATAATAATACATAAAATAAAAATAA
Found at i:82990196 original size:47 final size:46
Alignment explanation
Indices: 82990140--82990234 Score: 122
Period size: 49 Copynumber: 2.0 Consensus size: 46
82990130 AATATAAATA
*
82990140 ACATGATAAATAATA-CATAAATAA-AAATATTATATATAATAATTTT
1 ACATGATAAATAATATCATAAA-AATAAATAATATATATAA-AATTTT
*
82990186 ACATGTATAAATAATATTTATAAAAATAAATAATATATATAAAATTTT
1 ACATG-ATAAATAATA-TCATAAAAATAAATAATATATATAAAATTTT
82990234 A
1 A
82990235 AAATAAATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
46 5 0.12
47 10 0.23
48 9 0.21
49 19 0.44
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (46 bp):
ACATGATAAATAATATCATAAAAATAAATAATATATATAAAATTTT
Found at i:82990214 original size:19 final size:19
Alignment explanation
Indices: 82990192--82990229 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
82990182 TTTTACATGT
*
82990192 ATAAATAATATTTATAAAA
1 ATAAATAATATATATAAAA
82990211 ATAAATAATATATATAAAA
1 ATAAATAATATATATAAAA
82990230 TTTTAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
ATAAATAATATATATAAAA
Found at i:82990256 original size:47 final size:49
Alignment explanation
Indices: 82990145--82990257 Score: 119
Period size: 49 Copynumber: 2.3 Consensus size: 49
82990135 AAATAACATG
* * * *
82990145 ATAAATAATACATAAATAAAAATATTATATATAATAATTTTACATGTATAA
1 ATAAATTATATATAAA-AAAAATAATATATATAATAATTTTACA-GAATAA
*
82990196 ATAATATT-TATA-AAAATAAATAATATATATAA-AATTTTA-A-AATAA
1 ATAA-ATTATATATAAAAAAAATAATATATATAATAATTTTACAGAATAA
82990241 ATAAATTATATATAAAA
1 ATAAATTATATATAAAA
82990258 TGTATATATA
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
44 3 0.06
45 12 0.22
46 4 0.07
47 1 0.02
48 7 0.13
49 15 0.28
50 3 0.06
51 7 0.13
52 2 0.04
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.37
Consensus pattern (49 bp):
ATAAATTATATATAAAAAAAATAATATATATAATAATTTTACAGAATAA
Found at i:82990271 original size:30 final size:30
Alignment explanation
Indices: 82990079--82990271 Score: 80
Period size: 32 Copynumber: 6.4 Consensus size: 30
82990069 ATAGGGAATA
* *
82990079 ATATATAATAAATATATAATATATAATAAAAGCT
1 ATATAT-ATAAATAAAT-ATATAT-ATAAAA-TT
* *
82990113 ATATATA-AAATATATA-AAATAT-AAA-T
1 ATATATATAAATAAATATATATATAAAATT
* * * *
82990139 A-ACATGATAAAT-AATACATAAATAAAAAT
1 ATATAT-ATAAATAAATATATATATAAAATT
* * * *
82990168 AT-TATATATAATAATTTTACATGTATAAATAAT
1 ATATATATA-AATAA--ATATATATATAAA-ATT
* *
82990201 ATTTATAAAAATAAATAATATATATAAAATT
1 ATATATATAAATAAAT-ATATATATAAAATT
* *
82990232 TTA-AAATAAATAAAT-TATATATAAAATGT
1 ATATATATAAATAAATATATATATAAAAT-T
82990261 ATATATATAAA
1 ATATATATAAA
82990272 AGGATTAAAA
Statistics
Matches: 124, Mismatches: 20, Indels: 34
0.70 0.11 0.19
Matches are distributed among these distances:
25 3 0.02
26 6 0.05
27 8 0.06
28 21 0.17
29 12 0.10
30 20 0.16
31 5 0.04
32 27 0.22
33 11 0.09
34 11 0.09
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (30 bp):
ATATATATAAATAAATATATATATAAAATT
Found at i:82993644 original size:20 final size:18
Alignment explanation
Indices: 82993602--82993644 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
82993592 TTCTTTATCA
*
82993602 TCAATTATATAAATGCAT
1 TCAATTATATAAATCCAT
*
82993620 CCAATTATAATCAAATCCAT
1 TCAATTAT-AT-AAATCCAT
82993640 TCAAT
1 TCAAT
82993645 AACAATTCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 7 0.35
19 2 0.10
20 11 0.55
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (18 bp):
TCAATTATATAAATCCAT
Found at i:82995560 original size:70 final size:70
Alignment explanation
Indices: 82995431--82995568 Score: 195
Period size: 70 Copynumber: 2.0 Consensus size: 70
82995421 TTAATATTAA
* * *
82995431 TTTTTAATGAAAATAGTAAAGAAGCGAGTTGTGAAAGTATTCTCTAGTTAATATAGGATTAAAAT
1 TTTTTAATGAAAATAGTAAAGAAACGAGTTATGAAAGTATTCTCTAGTCAATATAGGATTAAAAT
82995496 TAACT
66 TAACT
* * * * * *
82995501 TTTTTAATGAAAATAGTGAAGAAATGAGTTATGAGAGTATTCTTTAGTCAATGTGGGATTAAAAT
1 TTTTTAATGAAAATAGTAAAGAAACGAGTTATGAAAGTATTCTCTAGTCAATATAGGATTAAAAT
82995566 TAA
66 TAA
82995569 AATGTAATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 59 1.00
ACGTcount: A:0.41, C:0.04, G:0.19, T:0.36
Consensus pattern (70 bp):
TTTTTAATGAAAATAGTAAAGAAACGAGTTATGAAAGTATTCTCTAGTCAATATAGGATTAAAAT
TAACT
Found at i:82997059 original size:19 final size:19
Alignment explanation
Indices: 82997035--82997073 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
82997025 ATGGCTAAGG
82997035 TATGTGATTTATTCAGGTA
1 TATGTGATTTATTCAGGTA
82997054 TATGTGATTTATTCAGGTA
1 TATGTGATTTATTCAGGTA
82997073 T
1 T
82997074 GGTCCATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.05, G:0.21, T:0.49
Consensus pattern (19 bp):
TATGTGATTTATTCAGGTA
Found at i:82999178 original size:12 final size:13
Alignment explanation
Indices: 82999161--82999192 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
82999151 TTTGATATTT
82999161 TGTGATGAG-TTG
1 TGTGATGAGTTTG
82999173 TGTGAT-AGTTTG
1 TGTGATGAGTTTG
82999185 TGTGATGA
1 TGTGATGA
82999193 ATGGAAGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 15 0.83
13 1 0.06
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.44
Consensus pattern (13 bp):
TGTGATGAGTTTG
Found at i:83001993 original size:93 final size:92
Alignment explanation
Indices: 83001794--83002082 Score: 292
Period size: 95 Copynumber: 3.1 Consensus size: 92
83001784 TTACATAAAA
* * * * * * *
83001794 TTTTTAATGAAATTAGTGAAGAAATTTATCACTTATTTATAAGCTCAATGTGAGATATAAGAGTG
1 TTTTTAATGAAAATAGTGAAGAAACTAAT-ACTTATTTATAAGC-AAATGCGAG-CATGAGAGTG
* * * *
83001859 TTCTCTAGTCAATATTGGATTAAAATAAAC
63 TTCTCTAGCCAATGTAGGATTAAAATTAAC
* *
83001889 -TTTTAATGAAAATAGTGAAGAAACTAATACTTATTTATTGAGCAAATGCGAGCATGAGAGAGTT
1 TTTTTAATGAAAATAGTGAAGAAACTAATACTTATTTA-TAAGCAAATGCGAGCATGAGAGTGTT
* *
83001953 TTCTAGCCAATGTAAGATTAAAATTAAC
65 CTCTAGCCAATGTAGGATTAAAATTAAC
* * * * * * * * *
83001981 TTTTTAATGAAAATAGTAAAAAAAAGCTAACACTTATTTAAAAAGCAAGTGCAAACGTGGGAGTG
1 TTTTTAATGAAAATAGT-GAAGAAA-CTAATACTTATTT-ATAAGCAAATGCGAGCATGAGAGTG
83002046 TTCTCTAGCCAATGTAGGATTAAAATTAAC
63 TTCTCTAGCCAATGTAGGATTAAAATTAAC
83002076 TTTTTAA
1 TTTTTAA
83002083 GGGAGCAAAT
Statistics
Matches: 161, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
92 31 0.19
93 32 0.20
94 34 0.21
95 63 0.39
96 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.34
Consensus pattern (92 bp):
TTTTTAATGAAAATAGTGAAGAAACTAATACTTATTTATAAGCAAATGCGAGCATGAGAGTGTTC
TCTAGCCAATGTAGGATTAAAATTAAC
Found at i:83002966 original size:18 final size:19
Alignment explanation
Indices: 83002931--83002967 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
83002921 TGAGCAAAAC
*
83002931 TCAATTTGATTCAAGTTAA
1 TCAATTTGAGTCAAGTTAA
83002950 TCAATTTGAGT-AAGTTAA
1 TCAATTTGAGTCAAGTTAA
83002968 GTTATTTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.41
Consensus pattern (19 bp):
TCAATTTGAGTCAAGTTAA
Found at i:83004700 original size:22 final size:24
Alignment explanation
Indices: 83004659--83004705 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
83004649 TAGTAATATA
83004659 AAAACATTAAAATTAATATTAAAT
1 AAAACATTAAAATTAATATTAAAT
* *
83004683 AAAA-ATT-AAATTATTATTTAAT
1 AAAACATTAAAATTAATATTAAAT
83004705 A
1 A
83004706 TAATATTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 14 0.67
23 3 0.14
24 4 0.19
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
AAAACATTAAAATTAATATTAAAT
Found at i:83013869 original size:18 final size:18
Alignment explanation
Indices: 83013829--83013874 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
83013819 GCACCCTCCC
*
83013829 AAAAAAAACCTAACCCTA
1 AAAAAAAACCTAACCCCA
*
83013847 AAAAAAAACCTAACCCCC
1 AAAAAAAACCTAACCCCA
*
83013865 CAAAAAAACC
1 AAAAAAAACC
83013875 AAGAAACCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.61, C:0.33, G:0.00, T:0.07
Consensus pattern (18 bp):
AAAAAAAACCTAACCCCA
Found at i:83014687 original size:15 final size:15
Alignment explanation
Indices: 83014661--83014706 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
83014651 TCATTTCTAA
83014661 TATGTATATATATAT
1 TATGTATATATATAT
*
83014676 GTAT-TTTATATATAT
1 -TATGTATATATATAT
83014691 TATGTATATATATAT
1 TATGTATATATATAT
83014706 T
1 T
83014707 TTTAATGCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 3 0.11
15 21 0.78
16 3 0.11
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (15 bp):
TATGTATATATATAT
Found at i:83014698 original size:13 final size:15
Alignment explanation
Indices: 83014667--83014703 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
83014657 CTAATATGTA
*
83014667 TATATATATGTATTT
1 TATATATATGTATTG
83014682 TATATATAT-TA-TG
1 TATATATATGTATTG
83014695 TATATATAT
1 TATATATAT
83014704 ATTTTTAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (15 bp):
TATATATATGTATTG
Found at i:83016738 original size:12 final size:12
Alignment explanation
Indices: 83016721--83016756 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
83016711 ATTCATTTGA
83016721 CATTCATGCATT
1 CATTCATGCATT
*
83016733 CATTCATGCATC
1 CATTCATGCATT
*
83016745 CATTCATTCATT
1 CATTCATGCATT
83016757 GCATATGCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:83016750 original size:16 final size:17
Alignment explanation
Indices: 83016729--83016760 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
83016719 GACATTCATG
83016729 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
83016745 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
83016761 ATGCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:83021433 original size:55 final size:56
Alignment explanation
Indices: 83021373--83021494 Score: 167
Period size: 57 Copynumber: 2.2 Consensus size: 56
83021363 TGAGGTATTC
* * *
83021373 TTAATTTTTGTTGTTTC-AAAAA-TCAACTCATGTTGCGAGAGGTGAGTTAAGCCTT
1 TTAATTTCTGTT-TTTCAAAAAATTCAACTCATATTACGAGAGGTGAGTTAAGCCTT
* *
83021428 TTAATTTCTGTTTTTCAAAAAAATTCAACTCATATTACGAGAGGTGAGTTGAGCTTT
1 TTAATTTCTGTTTTTC-AAAAAATTCAACTCATATTACGAGAGGTGAGTTAAGCCTT
83021485 TTAATTTCTG
1 TTAATTTCTG
83021495 CGAGAGTTGA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
54 4 0.07
55 11 0.19
56 5 0.08
57 39 0.66
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (56 bp):
TTAATTTCTGTTTTTCAAAAAATTCAACTCATATTACGAGAGGTGAGTTAAGCCTT
Found at i:83021506 original size:30 final size:30
Alignment explanation
Indices: 83021465--83021524 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
83021455 ACTCATATTA
83021465 CGAGAGGTGAGTTGAG-CTTTTTAATTTCTG
1 CGAGAGGTGAGTTGAGTC-TTTTAATTTCTG
*
83021495 CGAGAGTTGAGTTGAGTCTTTTAATTTCTG
1 CGAGAGGTGAGTTGAGTCTTTTAATTTCTG
83021525 TTTTTCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.42
Consensus pattern (30 bp):
CGAGAGGTGAGTTGAGTCTTTTAATTTCTG
Found at i:83021587 original size:87 final size:86
Alignment explanation
Indices: 83021409--83021587 Score: 202
Period size: 87 Copynumber: 2.1 Consensus size: 86
83021399 CTCATGTTGC
83021409 GAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAAAAATTCAACTCATATTACGAGAGGTG
1 GAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTC-AAAAAATTCAACTCATATTACGAGAGGTG
* ** * * *
83021474 AGTTGAGCTTTTTAATTTCTGC
65 AGTTGACCTAGTCAATATCTGA
* * * *
83021496 GAGAGTTGAGTTGAGTCTTTTAATTTCTGTTTTTC-AAAAA-TCAACTCATATTGCGAGAGGTGA
1 GAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAAAATTCAACTCATATTACGAGAGGTGA
83021559 GTTGAACCTCCAGTCACATATC-GA
66 GTTG-ACCT--AGTCA-ATATCTGA
83021583 GAGAG
1 GAGAG
83021588 CCAATTCATA
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
84 26 0.33
85 8 0.10
87 40 0.51
88 4 0.05
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (86 bp):
GAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAAAATTCAACTCATATTACGAGAGGTGA
GTTGACCTAGTCAATATCTGA
Found at i:83023097 original size:15 final size:13
Alignment explanation
Indices: 83023077--83023166 Score: 62
Period size: 12 Copynumber: 6.9 Consensus size: 13
83023067 CTAATACGTA
*
83023077 TATATATATGTATTT
1 TATATATAT-TA-TG
83023092 TATATATATTATG
1 TATATATATTATG
83023105 TATATATATTAGTG
1 TATATATATTA-TG
83023119 TATAT-T-TTATG
1 TATATATATTATG
* * *
83023130 TACATAT-GTATA
1 TATATATATTATG
*
83023142 TATATAT-TTTTG
1 TATATATATTATG
*
83023154 TACATATCATTAT
1 TATATAT-ATTAT
83023167 TTTATATTAT
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
11 6 0.10
12 21 0.34
13 13 0.21
14 12 0.20
15 9 0.15
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.54
Consensus pattern (13 bp):
TATATATATTATG
Found at i:83023172 original size:25 final size:25
Alignment explanation
Indices: 83023080--83023174 Score: 86
Period size: 25 Copynumber: 3.7 Consensus size: 25
83023070 ATACGTATAT
*
83023080 ATATATGTATTTTATATATATTATGTAT
1 ATATAT-TATTTTATAT-T-TTATGTAC
* *
83023108 ATATATTAGTGTATATTTTATGTAC
1 ATATATTATTTTATATTTTATGTAC
* *
83023133 ATAT-GTATATATATATTTT-TGTAC
1 ATATATTAT-TTTATATTTTATGTAC
83023157 ATATCATTATTTTATATT
1 ATAT-ATTATTTTATATT
83023175 ATTGTTGTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
24 11 0.20
25 27 0.48
26 4 0.07
27 8 0.14
28 6 0.11
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.56
Consensus pattern (25 bp):
ATATATTATTTTATATTTTATGTAC
Found at i:83023204 original size:13 final size:13
Alignment explanation
Indices: 83023092--83023204 Score: 63
Period size: 13 Copynumber: 8.8 Consensus size: 13
83023082 ATATGTATTT
*
83023092 TATATATATTATG
1 TATATATTTTATG
*
83023105 TATATATATTA-G
1 TATATATTTTATG
*
83023117 TGTATATTTTATG
1 TATATATTTTATG
* * *
83023130 TACATA-TGTATA
1 TATATATTTTATG
83023142 TATATATTTT-TG
1 TATATATTTTATG
* *
83023154 TACATATCATTAT-
1 TATATAT-TTTATG
* *
83023167 TTTATATTATTGTTG
1 TATATATT-TT-ATG
* *
83023182 TAAATTTTTTATG
1 TATATATTTTATG
83023195 TATATATTTT
1 TATATATTTT
83023205 TTTTATGTAC
Statistics
Matches: 72, Mismatches: 21, Indels: 14
0.67 0.20 0.13
Matches are distributed among these distances:
12 26 0.36
13 37 0.51
14 4 0.06
15 5 0.07
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.58
Consensus pattern (13 bp):
TATATATTTTATG
Found at i:83026702 original size:127 final size:127
Alignment explanation
Indices: 83026469--83026754 Score: 446
Period size: 127 Copynumber: 2.3 Consensus size: 127
83026459 GTAATGATTG
* * * *
83026469 ATGTTTGGGAACTCGAGGAATTGTGCCCTACCGTGCTGGGTTTCGATTTCCCGTTTGTTCAAAAT
1 ATGTTTGGAAATTCGAGGAATCGTGCCCTACCGTGCTGGATTTCGATTTCCCGTTTGTTCAAAAT
*
83026534 AATCGAATATTCCTTTAGAATTTCACTCGTGTTTCCCAAATTTTAAAACAAGACAATGTTCA
66 AATCGAATATTCCTTTAGAATTTCACTCGTGTTTCCCAAATTCTAAAACAAGACAATGTTCA
* * *
83026596 ATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGGATTTTGATTTCCCGTTTGTTCAAAAT
1 ATGTTTGGAAATTCGAGGAATCGTGCCCTACCGTGCTGGATTTCGATTTCCCGTTTGTTCAAAAT
* * * * *
83026661 AATCGAATATTCCTTTTGAATTTCACTCGTGTTTTCTAAATTCTAAAGCAAGGCAATGTTCA
66 AATCGAATATTCCTTTAGAATTTCACTCGTGTTTCCCAAATTCTAAAACAAGACAATGTTCA
*
83026723 ATGTTTGGAAATTCAAGGAATCGTGCCCTACC
1 ATGTTTGGAAATTCGAGGAATCGTGCCCTACC
83026755 ATGATGGGTT
Statistics
Matches: 143, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
127 143 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (127 bp):
ATGTTTGGAAATTCGAGGAATCGTGCCCTACCGTGCTGGATTTCGATTTCCCGTTTGTTCAAAAT
AATCGAATATTCCTTTAGAATTTCACTCGTGTTTCCCAAATTCTAAAACAAGACAATGTTCA
Found at i:83026812 original size:127 final size:127
Alignment explanation
Indices: 83026469--83026789 Score: 365
Period size: 127 Copynumber: 2.5 Consensus size: 127
83026459 GTAATGATTG
* * * * * * * **
83026469 ATGTTTGGGAACTCGAGGAATTGTGCCCTACCGTGCTGGGTTTCGATTTCCCGTTTGTTCAAAAT
1 ATGTTTGGAAATTCAAGGAATCGTGCCCTACCATGATGGATTTCGATTTCCCGTTTGGACAAAAT
* * *
83026534 AATCGAATATTCCTTTAGAATTTCACTCGTGTTTCCCAAATTTTAAAACAAGACAATGTTCA
66 AATCGAACATTCCTTTTGAATTTCACTCGTGTTTCCCAAATTCTAAAACAAGACAATGTTCA
** * * * * **
83026596 ATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGGATTTTGATTTCCCGTTTGTTCAAAAT
1 ATGTTTGGAAATTCAAGGAATCGTGCCCTACCATGATGGATTTCGATTTCCCGTTTGGACAAAAT
* * * * *
83026661 AATCGAATATTCCTTTTGAATTTCACTCGTGTTTTCTAAATTCTAAAGCAAGGCAATGTTCA
66 AATCGAACATTCCTTTTGAATTTCACTCGTGTTTCCCAAATTCTAAAACAAGACAATGTTCA
* * ** *
83026723 ATGTTTGGAAATTCAAGGAATCGTGCCCTACCATGATGGGTTTCGGTTTTTCG-TTGGACTAAAT
1 ATGTTTGGAAATTCAAGGAATCGTGCCCTACCATGATGGATTTCGATTTCCCGTTTGGACAAAAT
83026787 AAT
66 AAT
83026790 TGGGCATCCT
Statistics
Matches: 168, Mismatches: 26, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
126 11 0.07
127 157 0.93
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.37
Consensus pattern (127 bp):
ATGTTTGGAAATTCAAGGAATCGTGCCCTACCATGATGGATTTCGATTTCCCGTTTGGACAAAAT
AATCGAACATTCCTTTTGAATTTCACTCGTGTTTCCCAAATTCTAAAACAAGACAATGTTCA
Done.