Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 251 of 343
Found at i:83029705 original size:47 final size:46
Alignment explanation
Indices: 83029626--83029740 Score: 131
Period size: 47 Copynumber: 2.5 Consensus size: 46
83029616 TAGCTCAGCC
* * * * * *
83029626 ATGGTCTTACACGTATCACATATCACATTGATGCTATATCCCATAT
1 ATGGTCTTACACGAAGCACATATAACACTGATGCCATATCCCATAA
* *
83029672 ATGGTCTTACACAGAAGCACATATAATACTGATGCCATGTCCCATAA
1 ATGGTCTTACAC-GAAGCACATATAACACTGATGCCATATCCCATAA
*
83029719 ATGGTCTTATACGAAAGCACAT
1 ATGGTCTTACACG-AAGCACAT
83029741 TATCACATCA
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
46 13 0.22
47 45 0.78
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.30
Consensus pattern (46 bp):
ATGGTCTTACACGAAGCACATATAACACTGATGCCATATCCCATAA
Found at i:83029798 original size:47 final size:47
Alignment explanation
Indices: 83029594--83029799 Score: 119
Period size: 47 Copynumber: 4.2 Consensus size: 47
83029584 TGTACATAGT
* * ** * *
83029594 CACATATCACACACCGAAGCCATAGCTCAGCCATGGTCTTACAC-GTAT
1 CACATAT--CACACCGATGCCATAGCCCAGATATGGTCTTACACGGAAG
** * * * *
83029642 CACATATCACATTGATGCTATATCCCATATATGGTCTTACACAGAAG
1 CACATATCACACCGATGCCATAGCCCAGATATGGTCTTACACGGAAG
* * * * * * *
83029689 CACATATAATACTGATGCCAT-GTCCCATAAATGGTCTTATACGAAAG
1 CACATATCACACCGATGCCATAG-CCCAGATATGGTCTTACACGGAAG
* * *
83029736 CACATTATCACATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAG
1 CAC---AT---ATCACACCGATGCCATAGCCCAGATATGGTCTTACACGGAAG
83029789 CACATATCACA
1 CACATATCACA
83029800 TCTTTTTTGT
Statistics
Matches: 121, Mismatches: 28, Indels: 19
0.72 0.17 0.11
Matches are distributed among these distances:
46 26 0.21
47 48 0.40
48 7 0.06
50 4 0.03
53 35 0.29
54 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.25
Consensus pattern (47 bp):
CACATATCACACCGATGCCATAGCCCAGATATGGTCTTACACGGAAG
Found at i:83048709 original size:47 final size:47
Alignment explanation
Indices: 83048633--83048869 Score: 307
Period size: 47 Copynumber: 5.0 Consensus size: 47
83048623 GATTTTATGA
** * * *
83048633 GATGAATGTGAATGTGTATATTTGAGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
83048680 GATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
83048727 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* **
83048774 GATGAATGCGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * ** *
83048821 GATGAACGTGGAAGA-GTATATATGTGGCGAA-GCCGAATGGCTAATGT
1 GATGAATGT-GAACATGCATATATGT-GATAAGGCCGAATGGCCAATGT
83048868 GA
1 GA
83048870 AACGTGTATG
Statistics
Matches: 169, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
47 162 0.96
48 7 0.04
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:83048729 original size:22 final size:22
Alignment explanation
Indices: 83048701--83048776 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
83048691 ACATGCATAT
83048701 ATGTGATAAGGCCAAATGGCCA
1 ATGTGATAAGGCCAAATGGCCA
* ** *
83048723 ATGTGATGAATGTGAACAT-GCATA
1 ATGTGAT-AAGGCCAA-ATGGC-CA
*
83048747 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCAAATGGCCA
83048770 ATGTGAT
1 ATGTGAT
83048777 GAATGCGAAC
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 14 0.35
23 10 0.25
24 9 0.22
25 7 0.17
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCAAATGGCCA
Found at i:83048798 original size:25 final size:25
Alignment explanation
Indices: 83048676--83048801 Score: 99
Period size: 25 Copynumber: 5.3 Consensus size: 25
83048666 CGAATGGCCA
*
83048676 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGCGAACATGCATAT
* * *
83048701 ATGTGAT-AAGGCCAA-ATGGC-CA-
1 ATGTGATGAATGCGAACAT-GCATAT
*
83048723 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGCGAACATGCATAT
* *
83048748 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-CGAACAT-GCATAT
83048770 ATGTGATGAATGCGAACATGCATAT
1 ATGTGATGAATGCGAACATGCATAT
83048795 ATGTGAT
1 ATGTGAT
83048802 AAGGTAGAAT
Statistics
Matches: 76, Mismatches: 13, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
22 16 0.21
23 19 0.25
24 19 0.25
25 22 0.29
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (25 bp):
ATGTGATGAATGCGAACATGCATAT
Found at i:83053227 original size:44 final size:44
Alignment explanation
Indices: 83053173--83053650 Score: 346
Period size: 44 Copynumber: 10.8 Consensus size: 44
83053163 AATCTAAGAT
* *
83053173 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAACA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * *
83053217 GATTTGGCGTCTCTGCAGTTGTCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTA-TTGTCAGAGAGCAGATCAAAGATAGCA
* * * * * *
83053262 GATTTGGCGTCCCTGTATTGTCAGGGAGTAGATCGGAGACATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATC--AAAGATAGCA
* * * * *
83053308 GATTTGGCTTTCACGTGT-TTACG-CTGA-AGCAAATCTAAGAT----
1 GATTTGGC-ATCTC-TGTATT--GTCAGAGAGCAGATCAAAGATAGCA
* * * * *
83053349 GATTTGGCATCTCTGTATTTGACAATACAGTAGATCAAAGATAGTA
1 GATTTGGCATCTCTGTA-TTGTC-AGAGAGCAGATCAAAGATAGCA
* * *
83053395 GATTTGGCATCTCTGTATTTGTCAGGGAGCAGATCGAGGATAGCA
1 GATTTGGCATCTCTGTA-TTGTCAGAGAGCAGATCAAAGATAGCA
* * * * *
83053440 GATTTGGCATCTCTGTATGGTTAGAGAGCAAATCAGAGATAGTA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * * * * *
83053484 GATTTGACATCTTTGTATTCGAC-GAGGAGAAAATCCAAGA-AGCA
1 GATTTGGCATCTCTGTATT-GTCAGA-GAGCAGATCAAAGATAGCA
* * *
83053528 GATTTGGCATCCCTGTATTGTCA-AGGAGCAGATCAAAGACATCA
1 GATTTGGCATCTCTGTATTGTCAGA-GAGCAGATCAAAGATAGCA
* * *
83053572 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAATATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * * * *
83053616 GATTTGGCGTCTTTGTGTTCGACGGAGAGCAGATC
1 GATTTGGCATCTCTGTATT-GTCAGAGAGCAGATC
83053651 GAAATATTAG
Statistics
Matches: 343, Mismatches: 69, Indels: 43
0.75 0.15 0.09
Matches are distributed among these distances:
39 4 0.01
40 4 0.01
41 11 0.03
42 11 0.03
43 15 0.04
44 143 0.42
45 101 0.29
46 37 0.11
47 11 0.03
48 5 0.01
49 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
Found at i:83053269 original size:176 final size:173
Alignment explanation
Indices: 83053086--83053634 Score: 531
Period size: 176 Copynumber: 3.1 Consensus size: 173
83053076 GATCCAAGAT
* *
83053086 GATTTGGCATCTTTATGTTTACAAGGAACAGATCGAATACATAGCAGATTTGGCTTTCTCGTGTT
1 GATTTGGCATCTTTATGTTTACAAGGAGCAGATCG-AGACATAGCAGATTTGGCTTTCTCGTGTT
* *
83053151 TATGCTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAAC
65 TACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA-AGAGCAGATCAAAGATAAC
*
83053216 AGATTTGGCGTCTCTGCAGTTGTCAGAGAGCAGATCGAAGATAGCA
129 AGATTTGGCGTCTCTGTA-TTGTCAGAGAGCAGATCGAAGATAGCA
* * * * * *
83053262 GATTTGGCGTCCCTGTAT-TGT-CAGGGAGTAGATCGGAGACATAGCAGATTTGGCTTTCACGTG
1 GATTTGGCAT--CTTTATGTTTACAAGGAGCAGATC-GAGACATAGCAGATTTGGCTTTCTCGTG
* * *
83053325 TTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTTGACAATACAGTAGATCAAAGA
63 TTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTA-TTGTC-A-AGAGCAGATCAAAGA
** * * *
83053390 TAGTAGATTTGGCATCTCTGTATTTGTCAGGGAGCAGATCGAGGATAGCA
125 TAACAGATTTGGCGTCTCTGTA-TTGTCAGAGAGCAGATCGAAGATAGCA
* * * * * * * *
83053440 GATTTGGCATCTCTGTATGGTTA-GA-GAGCAAATC-AGAGATAGTAGATTTGAC-ATCT-TTGT
1 GATTTGGCATCT-T-TATGTTTACAAGGAGCAGATCGAGACATAGCAGATTTGGCTTTCTCGTGT
* * * *
83053500 ATT-CGAC-GAGGAGAAAATCCAAGAAGCAGATTTGGCATCCCTGTATTGTCAAGGAGCAGATCA
64 -TTACG-CTGA--AGCAAATCTAAG-A--TGATTTGGCATCTCTGTATTGTCAA-GAGCAGATCA
* * *
83053563 AAGACATCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAATATAGCA
121 AAGATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
83053616 GATTTGGCGTCTTTGTGTT
1 GATTTGGCATCTTTATGTT
83053635 CGACGGAGAG
Statistics
Matches: 304, Mismatches: 52, Indels: 36
0.78 0.13 0.09
Matches are distributed among these distances:
174 11 0.04
175 6 0.02
176 146 0.48
177 39 0.13
178 85 0.28
179 17 0.06
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (173 bp):
GATTTGGCATCTTTATGTTTACAAGGAGCAGATCGAGACATAGCAGATTTGGCTTTCTCGTGTTT
ACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAAGAGCAGATCAAAGATAACAG
ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
Found at i:83061347 original size:16 final size:16
Alignment explanation
Indices: 83061328--83061416 Score: 63
Period size: 16 Copynumber: 5.1 Consensus size: 16
83061318 ATAATATAAC
83061328 AATAATAATATAAAAT
1 AATAATAATATAAAAT
*
83061344 AATAATAATTTGTGAAAAAT
1 AATAATAA--TAT--AAAAT
83061364 AATAAATAATAATACAAAT
1 AAT-AATAAT-ATA-AAAT
*
83061383 AATATATAATAGAATAAT
1 AATA-ATAATATAA-AAT
*
83061401 TAT-ATAATATAAAAT
1 AATAATAATATAAAAT
83061416 A
1 A
83061417 TAAAAAAAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
15 3 0.05
16 16 0.28
17 1 0.02
18 11 0.19
19 13 0.22
20 9 0.16
21 5 0.09
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (16 bp):
AATAATAATATAAAAT
Found at i:83063827 original size:206 final size:206
Alignment explanation
Indices: 83063177--83064067 Score: 1356
Period size: 206 Copynumber: 4.3 Consensus size: 206
83063167 CACGAAAACT
* *
83063177 AAATCAGCTATGTCTTCGATTTACTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCT
1 AAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCT
** * * * * *
83063242 TCAGTCTAATCATCTGAAGGTTAGATTTGCTATGTGTCTACCCTCCATCGAATATGGAGACGCCA
66 TCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGATGCCA
* * * * * * *
83063307 AACCTCAATTTGTTTTCTGACAATACAAAGATGCCAAATCATCTTACACTTGCTTCAACGTAAGC
131 GACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGC
83063372 ACGTGAAAGCC
196 ACGTGAAAGCC
* * ***
83063383 AAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAAGCATCTTGGATCTAAA
1 AAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCT
* *
83063448 ACAGT-ATAATCATCTGAAGGTTG-GATCTGCTATGTGTCTGCCCTCCGTCGAA-GTGGAGATGC
66 TCAGTGA-AATCATCTGAAGG-TGAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGATGC
*
83063510 CAGACTTCGATTTGTTCTGTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAA
129 CAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAA
83063575 GCACGTGAAAGCC
194 GCACGTGAAAGCC
* *
83063588 AAATCAGCTATGTCTTCGATTTGCTCTTTGTAAGCACAAGGATGCCAAACCATCTTAGATCTGCT
1 AAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCT
* * * *
83063653 TCAGTGAAATCATCTGAAGGTGAGATCTGCTAGGTGTCTGCTCTTCGTCAAATATGGAGATGCCA
66 TCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGATGCCA
** * *
83063718 GACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTATTTCATCGTAAAC
131 GACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGC
83063783 ACGTGAAAGCC
196 ACGTGAAAGCC
* * * * *
83063794 AAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCAGAAGGATGCCAAATCATCTTAGATCTGCT
1 AAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCT
*
83063859 TCAGTGAAATCATCTGAAGGTGAGATCTGCTACGTGTCTGCCCTCCGTCGAATATGGAGATGCCA
66 TCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGATGCCA
*
83063924 GACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGC
131 GACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGC
*
83063989 ACGTGAAATCC
196 ACGTGAAAGCC
*
83064000 AAATCAGTTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCT
1 AAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCT
83064065 TCA
66 TCA
83064068 ACCAGATCTG
Statistics
Matches: 620, Mismatches: 60, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
204 2 0.00
205 178 0.29
206 439 0.71
207 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (206 bp):
AAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCT
TCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGATGCCA
GACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGC
ACGTGAAAGCC
Found at i:83076028 original size:21 final size:22
Alignment explanation
Indices: 83075984--83076037 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
83075974 AAATATCAAG
* *
83075984 TATGTAAAAGAATTCATATTTA
1 TATGTAAAATAATTCATATATA
83076006 TA-GTAAAATAATT-ATATAATA
1 TATGTAAAATAATTCATAT-ATA
*
83076027 TATATAAAATA
1 TATGTAAAATA
83076038 TAAGTTTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 4 0.15
21 14 0.52
22 9 0.33
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.39
Consensus pattern (22 bp):
TATGTAAAATAATTCATATATA
Found at i:83076229 original size:14 final size:16
Alignment explanation
Indices: 83076207--83076239 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
83076197 AAATGATAAT
83076207 AATATATAG-ATAAAA
1 AATATATAGTATAAAA
83076222 AATA-ATAGTATAAAA
1 AATATATAGTATAAAA
83076237 AAT
1 AAT
83076240 GACATCATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (16 bp):
AATATATAGTATAAAA
Found at i:83076353 original size:11 final size:11
Alignment explanation
Indices: 83076333--83076419 Score: 55
Period size: 11 Copynumber: 8.3 Consensus size: 11
83076323 ATAATACGAG
83076333 TAAA-AATATA
1 TAAATAATATA
83076343 -ACAATAATATA
1 TA-AATAATATA
83076354 TAAATAATA-A
1 TAAATAATATA
83076364 TATAA-AATA-A
1 TA-AATAATATA
* *
83076374 T-AATAATTTG
1 TAAATAATATA
83076384 TGAAA-AATA-A
1 T-AAATAATATA
83076394 TAAATAATAATA
1 TAAATAAT-ATA
*
83076406 CAAATAATATA
1 TAAATAATATA
83076417 TAA
1 TAA
83076420 TAGAATAATT
Statistics
Matches: 60, Mismatches: 6, Indels: 21
0.69 0.07 0.24
Matches are distributed among these distances:
8 2 0.03
9 7 0.12
10 16 0.27
11 24 0.40
12 11 0.18
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (11 bp):
TAAATAATATA
Found at i:83076356 original size:13 final size:12
Alignment explanation
Indices: 83076338--83076379 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
83076328 ACGAGTAAAA
83076338 ATATAACAATAAT
1 ATATAA-AATAAT
83076351 ATAT-AAATAAT
1 ATATAAAATAAT
83076362 AATATAAAATAAT
1 -ATATAAAATAAT
83076375 A-ATAA
1 ATATAA
83076380 TTTGTGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 10 0.37
12 6 0.22
13 11 0.41
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (12 bp):
ATATAAAATAAT
Found at i:83076377 original size:16 final size:16
Alignment explanation
Indices: 83076356--83076444 Score: 63
Period size: 16 Copynumber: 5.1 Consensus size: 16
83076346 ATAATATATA
83076356 AATAATAATATAAAAT
1 AATAATAATATAAAAT
*
83076372 AATAATAATTTGTGAAAAAT
1 AATAATAA--TAT--AAAAT
83076392 AATAAATAATAATACAAAT
1 AAT-AATAAT-ATA-AAAT
*
83076411 AATATATAATAGAATAAT
1 AATA-ATAATATAA-AAT
*
83076429 TAT-ATAATATAAAAT
1 AATAATAATATAAAAT
83076444 A
1 A
83076445 TAAAAATAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
15 3 0.05
16 16 0.28
17 1 0.02
18 11 0.19
19 13 0.22
20 9 0.16
21 5 0.09
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (16 bp):
AATAATAATATAAAAT
Found at i:83076379 original size:30 final size:30
Alignment explanation
Indices: 83076340--83076453 Score: 83
Period size: 30 Copynumber: 3.7 Consensus size: 30
83076330 GAGTAAAAAT
*
83076340 ATAACAATAATATATAAATAATAATATAAA
1 ATAATAATAATATATAAATAATAATATAAA
* *
83076370 ATAATAATAATTTGTGAAA-AATAATA-AATA
1 ATAATAATAATATAT-AAATAATAATATAA-A
* *
83076400 ATAATACAAATAATATATAATAGAATAATTATATA
1 ATAAT---AATAATATATAA-ATAATAA-TATAAA
*
83076435 AT-ATAA-AATATAAAAATAA
1 ATAATAATAATATATAAATAA
83076454 GGTAAAAAGA
Statistics
Matches: 67, Mismatches: 8, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
29 5 0.07
30 33 0.49
31 5 0.07
32 2 0.03
33 9 0.13
34 7 0.10
35 5 0.07
36 1 0.01
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (30 bp):
ATAATAATAATATATAAATAATAATATAAA
Found at i:83077922 original size:12 final size:13
Alignment explanation
Indices: 83077903--83077933 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
83077893 AAATAAACAA
83077903 TCATTTATTTATT
1 TCATTTATTTATT
83077916 T-ATTTATTTATT
1 TCATTTATTTATT
83077928 TCATTT
1 TCATTT
83077934 GGTTTTAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (13 bp):
TCATTTATTTATT
Found at i:83080125 original size:22 final size:23
Alignment explanation
Indices: 83080073--83080125 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
83080063 AATTCTCTTA
*
83080073 AAATTT-ATTAAATTATAAATTT
1 AAATTTAATAAAATTATAAATTT
* * *
83080095 ATATATAATAAAATTAT-ACTTT
1 AAATTTAATAAAATTATAAATTT
83080117 AAATTTAAT
1 AAATTTAAT
83080126 TTTTTTAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
AAATTTAATAAAATTATAAATTT
Found at i:83080625 original size:28 final size:26
Alignment explanation
Indices: 83080594--83080653 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
83080584 GTATGTTATT
83080594 TAAATTATATAATAATATATAAAATAAA
1 TAAATTATATAATAATA-ATAAAA-AAA
* * *
83080622 TAAATAATATATTAATAATTAAAAAA
1 TAAATTATATAATAATAATAAAAAAA
83080648 TAAATT
1 TAAATT
83080654 GAACTTAGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.29
27 5 0.18
28 15 0.54
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (26 bp):
TAAATTATATAATAATAATAAAAAAA
Found at i:83086069 original size:48 final size:48
Alignment explanation
Indices: 83085946--83086069 Score: 167
Period size: 48 Copynumber: 2.6 Consensus size: 48
83085936 ACATTATGAG
* * * * *
83085946 AGCTAGTGTAACACATGTCTGGGACATACATCGGCCTCGAGATATATA
1 AGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACA
* *
83085994 AACCAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACA
1 AGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACA
* *
83086042 AGCTAGTGTAAGACCTATCTAGGACATG
1 AGCTAGTGTAAGACATGTCTAGGACATG
83086070 GCATTAGCTT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (48 bp):
AGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACA
Found at i:83088406 original size:203 final size:203
Alignment explanation
Indices: 83088040--83088441 Score: 608
Period size: 203 Copynumber: 2.0 Consensus size: 203
83088030 GAAGCTCTGC
* * * *
83088040 ATGTCGCAATCGTCATGAGAATTGAAGTCTGGTAGTAGAGAAGTTGAGGAACTGGTGAATTTCCT
1 ATGTCGCAACCATCATGAGAATTGAAGTCTGGTAGTAGAGAAGTTGAGGAACTGGTAAACTTCCT
* * *
83088105 TACCTCTCTGTACTTGTGGATTGAAGAGAGAAATAGAGTAAGAACACTTAAAAGCTTCTATATAA
66 TACCTCTCTGTACTTGCGAATTAAAGAGAGAAATAGAGTAAGAACACTTAAAAGCTTCTATATAA
* * * *
83088170 TTATGGATTCTGGATTTTTACGGTTTAAACACCTTTAGTTTAA-CTAATAAATGGTTGTCATGCT
131 TTACGGATTATGGATTTTTAAGGGTTAAACACCTTTAGTTTAATC-AATAAATGGTTGTCATGCT
83088234 TAGCTTTGT
195 TAGCTTTGT
*
83088243 ATGTCGCAACCATCATGAGAATTGAAGTCTGGTAGTAGAGAAGTTGAGGAATTGGTAAACTTCCT
1 ATGTCGCAACCATCATGAGAATTGAAGTCTGGTAGTAGAGAAGTTGAGGAACTGGTAAACTTCCT
* * * *
83088308 TACCTCTCTGTACTTGCGAATTAAAGAGAGAAGTAGAGTAGGAACTCTTAAAAGCTTCTGTATAA
66 TACCTCTCTGTACTTGCGAATTAAAGAGAGAAATAGAGTAAGAACACTTAAAAGCTTCTATATAA
* * * *
83088373 TTACGGATTATGGGTTTTTAAGGGTTGAACACCTTTATTTTAATCGATAAATGGTTGTCATGCTT
131 TTACGGATTATGGATTTTTAAGGGTTAAACACCTTTAGTTTAATCAATAAATGGTTGTCATGCTT
83088438 AGCT
196 AGCT
83088442 ATCAAGACAA
Statistics
Matches: 178, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
203 177 0.99
204 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (203 bp):
ATGTCGCAACCATCATGAGAATTGAAGTCTGGTAGTAGAGAAGTTGAGGAACTGGTAAACTTCCT
TACCTCTCTGTACTTGCGAATTAAAGAGAGAAATAGAGTAAGAACACTTAAAAGCTTCTATATAA
TTACGGATTATGGATTTTTAAGGGTTAAACACCTTTAGTTTAATCAATAAATGGTTGTCATGCTT
AGCTTTGT
Found at i:83108922 original size:55 final size:55
Alignment explanation
Indices: 83108801--83108928 Score: 136
Period size: 55 Copynumber: 2.3 Consensus size: 55
83108791 GCGACATGGT
** * *
83108801 CGTGGTCGAACCTGCCAAAACAACACGGACGTGCGACATGCCCGTGTGGAAGAAC
1 CGTGGTCGAACCTGTTAAAACAACACGGACGTGCGACACGCCCGTGTGCAAGAAC
* * * *
83108856 CGTGGGT-GAACCTGTTAAAACAACACAGG-TGTGTGACACGCCCGTGT-CTAGTAC
1 CGT-GGTCGAACCTGTTAAAACAACAC-GGACGTGCGACACGCCCGTGTGCAAGAAC
83108910 CGATGGTCGAACCTGTTAA
1 CG-TGGTCGAACCTGTTAA
83108929 CTTAACACGG
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
54 9 0.15
55 47 0.77
56 5 0.08
ACGTcount: A:0.27, C:0.26, G:0.28, T:0.19
Consensus pattern (55 bp):
CGTGGTCGAACCTGTTAAAACAACACGGACGTGCGACACGCCCGTGTGCAAGAAC
Found at i:83109989 original size:60 final size:60
Alignment explanation
Indices: 83109909--83110047 Score: 156
Period size: 60 Copynumber: 2.3 Consensus size: 60
83109899 ATCAGAGTTA
* * * *
83109909 ACTGGGCTTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATTAGAGTAT
1 ACTGGGC-CTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGT-TGAGA-TAT
* * *
83109970 ACTGGGCCTAGCCCATATCAGTATCAATCTTGGCCGTAGCCCTATTACAAGTTGAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTTGAGATAT
* *
83110030 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTAGCCCATAT
83110048 TAACACAGTT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
60 49 0.73
61 15 0.22
62 3 0.04
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (60 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTTGAGATAT
Found at i:83110065 original size:20 final size:20
Alignment explanation
Indices: 83110040--83110079 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
83110030 ATTGGGCCTT
83110040 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTTGG
*
83110060 GCCCATTTCAATACAGTTGG
1 GCCCATTTCAACACAGTTGG
83110080 CCTATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
GCCCATTTCAACACAGTTGG
Found at i:83112668 original size:22 final size:20
Alignment explanation
Indices: 83112623--83112681 Score: 82
Period size: 22 Copynumber: 2.9 Consensus size: 20
83112613 TTGTACAGGA
*
83112623 TTGCACTTCGGTGCCTCTAT
1 TTGCACTTTGGTGCCTCTAT
83112643 TTGCACTTTGGTGCCTCTATAT
1 TTGCACTTTGGTGCCTC--TAT
*
83112665 TTGCACTATGGTGCCTC
1 TTGCACTTTGGTGCCTC
83112682 AATTAGTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
20 16 0.46
22 19 0.54
ACGTcount: A:0.12, C:0.27, G:0.20, T:0.41
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTAT
Found at i:83114887 original size:48 final size:48
Alignment explanation
Indices: 83114835--83114963 Score: 195
Period size: 48 Copynumber: 2.6 Consensus size: 48
83114825 GATATGTGCA
* *
83114835 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATACAAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAAATATACAAG
* *
83114883 CTAGTGTAAGATATGCCTGGGACATGCATCAGCCTCAAAATATACAAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAAATATACAAG
*
83114931 CTAGTGTAAAGACCTGTCTGGGACATGGCATCA
1 CTAGTGT-AAGACATGTCTGGGACAT-GCATCA
83114964 ACTTCTTGTG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
48 51 0.71
49 15 0.21
50 6 0.08
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (48 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAAATATACAAG
Found at i:83115052 original size:49 final size:50
Alignment explanation
Indices: 83114991--83115104 Score: 153
Period size: 49 Copynumber: 2.3 Consensus size: 50
83114981 GTAAGATTTG
* *
83114991 TCTGGGACATGGCATCGA-CAC-CTATAAATGAGAGCCAGTGTAAGACCTA
1 TCTGGGACATGGCATCGAGC-CTCGATAAATGAAAGCCAGTGTAAGACCTA
* * *
83115040 TCTGGGACATGGCA-CTAGCCTCGATATATGAAAGTCAGTGTAAGACCTA
1 TCTGGGACATGGCATCGAGCCTCGATAAATGAAAGCCAGTGTAAGACCTA
83115089 TCTGGGACATGGCATC
1 TCTGGGACATGGCATC
83115105 AACTTTGATG
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
48 3 0.05
49 53 0.93
50 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (50 bp):
TCTGGGACATGGCATCGAGCCTCGATAAATGAAAGCCAGTGTAAGACCTA
Found at i:83131686 original size:46 final size:45
Alignment explanation
Indices: 83131619--83131790 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 45
83131609 TATTTGGGCA
83131619 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
83131665 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
83131712 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
83131758 CCCGAGCTCGTTGATTTGATTCCGAGTTCACTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
83131791 GGGCGGGTTA
Statistics
Matches: 103, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 62 0.60
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:83131785 original size:93 final size:93
Alignment explanation
Indices: 83131615--83131786 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
83131605 AGGATATTTG
* *
83131615 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
83131680 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
83131708 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
83131773 TTGATTCCGAGTTC
66 TTGAGTCCGAGTTC
83131787 ACTTGGGCGG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:83137663 original size:46 final size:45
Alignment explanation
Indices: 83137610--83137785 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
83137600 GATTTGGGCA
83137610 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
83137656 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
83137703 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
83137749 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83137786 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:83137716 original size:93 final size:93
Alignment explanation
Indices: 83137606--83137777 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
83137596 CTAGGATTTG
* *
83137606 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
83137671 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
83137699 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
83137764 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
83137778 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:83143156 original size:46 final size:45
Alignment explanation
Indices: 83143103--83143278 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
83143093 TATTTGGGCA
83143103 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
83143149 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
83143196 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
83143242 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83143279 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:83143258 original size:93 final size:93
Alignment explanation
Indices: 83143099--83143270 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
83143089 AGGATATTTG
* *
83143099 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
83143164 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
83143192 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
83143257 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
83143271 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:83147573 original size:13 final size:13
Alignment explanation
Indices: 83147537--83147574 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
83147527 TCCAAACGAT
83147537 AAAATTATCACAC
1 AAAATTATCACAC
83147550 AAAACTT-TCACAC
1 AAAA-TTATCACAC
83147563 AAAATTATCACA
1 AAAATTATCACA
83147575 TATTGTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.09
13 19 0.83
14 2 0.09
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAATTATCACAC
Found at i:83164207 original size:11 final size:11
Alignment explanation
Indices: 83164186--83164210 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
83164176 TTCATTTTCC
83164186 TTTAATTTTAG
1 TTTAATTTTAG
83164197 TTTAATTTTAG
1 TTTAATTTTAG
83164208 TTT
1 TTT
83164211 TTACAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTAATTTTAG
Found at i:83169157 original size:51 final size:49
Alignment explanation
Indices: 83169030--83169224 Score: 230
Period size: 49 Copynumber: 3.9 Consensus size: 49
83169020 TAGCCGAACC
* *
83169030 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * * * *
83169079 AATCTGGTAC-AAGTAGTAGCCTACACTTAGTACTACACACGTGATCACAGT
1 TATCAGGTACGCA-TAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAAT
* *
83169130 TTTCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
83169179 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
83169225 TCACAATAGT
Statistics
Matches: 122, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
48 1 0.01
49 80 0.66
50 2 0.02
51 38 0.31
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:83169208 original size:100 final size:100
Alignment explanation
Indices: 83169035--83169222 Score: 340
Period size: 100 Copynumber: 1.9 Consensus size: 100
83169025 GAACCTATCT
*
83169035 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACAAGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACAAGTAGTAGCC
83169100 TACACTTAGTACTACACACGTGATCACAGTTTTCA
66 TACACTTAGTACTACACACGTGATCACAGTTTTCA
* *
83169135 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACAAGTAGTAGCC
*
83169200 TGCACTTAGTACTACACACGTGA
66 TACACTTAGTACTACACACGTGA
83169223 CCTCACAATA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACAAGTAGTAGCC
TACACTTAGTACTACACACGTGATCACAGTTTTCA
Found at i:83178242 original size:7 final size:7
Alignment explanation
Indices: 83178230--83178261 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
83178220 ATGCCCGTGT
83178230 CACAATA
1 CACAATA
83178237 CACAATA
1 CACAATA
83178244 CACAATA
1 CACAATA
83178251 CACAATA
1 CACAATA
83178258 CACA
1 CACA
83178262 TAAATAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.56, C:0.31, G:0.00, T:0.12
Consensus pattern (7 bp):
CACAATA
Found at i:83179584 original size:40 final size:40
Alignment explanation
Indices: 83179490--83179714 Score: 242
Period size: 40 Copynumber: 5.6 Consensus size: 40
83179480 TATTCAAATG
*
83179490 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
83179531 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * * *
83179571 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
83179611 ATATCCGGGCTAA-AACAAGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCTAGTGACT
* *
83179651 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
83179691 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
83179715 CTTGTGCAAG
Statistics
Matches: 153, Mismatches: 24, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
39 3 0.02
40 119 0.78
41 30 0.20
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:83179674 original size:80 final size:80
Alignment explanation
Indices: 83179490--83179750 Score: 269
Period size: 80 Copynumber: 3.3 Consensus size: 80
83179480 TATTCAAATG
* * * * *
83179490 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGAACAGAAGGC
83179555 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTTGCT
* * * *
83179571 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCCGGGCTAA-AACAAGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAAC-AGAAGGC
* *
83179635 ATTTGTGCTAG-TGACT
65 ATTCGTGCGAGTTG-CT
* * * * * *
83179651 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAACAGAAGGCA
* * *
83179716 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTTGCT
* *
83179730 ATA-CCCGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
83179751 ATTACTTGAG
Statistics
Matches: 150, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
78 16 0.11
79 14 0.09
80 87 0.58
81 33 0.22
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAACAGAAGGCA
TTCGTGCGAGTTGCT
Found at i:83179704 original size:120 final size:121
Alignment explanation
Indices: 83179490--83179714 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 121
83179480 TATTCAAATG
** ** *
83179490 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACAAGAAGGCATTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
* * *
83179555 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
* *
83179611 ATATCCGGGCTAAAACAAGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACAAGAAGGCATTTGTGCTAGGTGACTATAACCGGACTAAGAT-CCGAAGG
* * *
83179674 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCAAAGGC
83179715 CTTGTGCAAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 3 0.03
120 57 0.64
121 29 0.33
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACAAGAAGGCATTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
Found at i:83194009 original size:13 final size:12
Alignment explanation
Indices: 83193980--83194009 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
83193970 TCCTGAGTTG
83193980 ATTTTTGTAGGA
1 ATTTTTGTAGGA
*
83193992 ATTTTTGTAGGC
1 ATTTTTGTAGGA
83194004 ATTTTT
1 ATTTTT
83194010 AACATAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.03, G:0.20, T:0.57
Consensus pattern (12 bp):
ATTTTTGTAGGA
Found at i:83194593 original size:19 final size:20
Alignment explanation
Indices: 83194569--83194614 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
83194559 CATCCAAACA
83194569 CCAGAAAAGTAAATCA-TTT
1 CCAGAAAAGTAAATCATTTT
83194588 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
83194608 CCAGAAA
1 CCAGAAA
83194615 TCATTTTCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:83194635 original size:14 final size:14
Alignment explanation
Indices: 83194598--83194628 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
83194588 CCAGAAAAGT
83194598 AAATCATTTTCCAG
1 AAATCATTTTCCAG
83194612 AAATCATTTTCCAG
1 AAATCATTTTCCAG
83194626 AAA
1 AAA
83194629 ATATTTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.32
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:83197661 original size:16 final size:16
Alignment explanation
Indices: 83197619--83197661 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 16
83197609 TAATAAGAGT
83197619 TATTTTGTAGGAATTA
1 TATTTTGTAGGAATTA
83197635 TAATTTTGTAGGAATTA
1 T-ATTTTGTAGGAATTA
*
83197652 TATTTGGTAG
1 TATTTTGTAG
83197662 TTTCGACGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.36
17 16 0.64
ACGTcount: A:0.30, C:0.00, G:0.21, T:0.49
Consensus pattern (16 bp):
TATTTTGTAGGAATTA
Found at i:83206235 original size:6 final size:6
Alignment explanation
Indices: 83206224--83206286 Score: 83
Period size: 6 Copynumber: 10.2 Consensus size: 6
83206214 TAAGAAGATA
83206224 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT ATT-TTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT -TTATTT TTATTT
*
83206272 ATTTTATT TTATTT T
1 -TTAT-TT TTATTT T
83206287 ATTAAATTAG
Statistics
Matches: 51, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
5 2 0.04
6 39 0.76
7 8 0.16
8 2 0.04
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTATTT
Found at i:83206242 original size:5 final size:5
Alignment explanation
Indices: 83206228--83206289 Score: 60
Period size: 5 Copynumber: 12.4 Consensus size: 5
83206218 AAGATATTAT
83206228 TTTTA TTTTTA TTTTTA TTTTTA TTTT- TATTTA -TTT- TTTTA -TTTA
1 TTTTA -TTTTA -TTTTA -TTTTA TTTTA T-TTTA TTTTA TTTTA TTTTA
83206273 TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TT
83206290 AAATTAGTTA
Statistics
Matches: 51, Mismatches: 0, Indels: 11
0.82 0.00 0.18
Matches are distributed among these distances:
4 11 0.22
5 23 0.45
6 17 0.33
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:83213104 original size:41 final size:41
Alignment explanation
Indices: 83213047--83213131 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
83213037 AATGCCCAAA
83213047 CCACAAAATAGAAAAGTGAGTACTCACAATCCTATGACATG
1 CCACAAAATAGAAAAGTGAGTACTCACAATCCTATGACATG
*
83213088 CCACAAAATAGAAAAGTGAGTACTCACAGTCCTATGACATG
1 CCACAAAATAGAAAAGTGAGTACTCACAATCCTATGACATG
83213129 CCA
1 CCA
83213132 ACTATATCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.42, C:0.24, G:0.15, T:0.19
Consensus pattern (41 bp):
CCACAAAATAGAAAAGTGAGTACTCACAATCCTATGACATG
Found at i:83214636 original size:37 final size:37
Alignment explanation
Indices: 83214577--83214685 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
83214567 AGCTCAGACG
* * * *
83214577 AAATCTCCACATGAAGTTATCGGGTCTTACTCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
83214614 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
83214651 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
83214686 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:83214954 original size:47 final size:47
Alignment explanation
Indices: 83214892--83215331 Score: 538
Period size: 47 Copynumber: 9.1 Consensus size: 47
83214882 ACACGTTTCG
* * *
83214892 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
83214939 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
83214986 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * *
83215033 CATTGTCCATTCGGCATTATCACACATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC----ATATATGCATGTTCACATTCATCA
** *
83215086 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* **
83215133 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
** *
83215184 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* **
83215231 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
* * *
83215282 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
83215329 CAT
1 CAT
83215332 AAAATCCTAA
Statistics
Matches: 337, Mismatches: 42, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
47 205 0.61
49 15 0.04
51 79 0.23
53 38 0.11
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:83214961 original size:22 final size:22
Alignment explanation
Indices: 83214935--83215009 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
83214925 GTTCACATTC
83214935 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
83214957 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
83214981 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
83215004 ATCACA
1 ATCACA
83215010 CATACGCATG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.40
23 7 0.17
24 7 0.17
25 10 0.25
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:83215213 original size:98 final size:98
Alignment explanation
Indices: 83214892--83215331 Score: 708
Period size: 98 Copynumber: 4.5 Consensus size: 98
83214882 ACACGTTTCG
* * * **
83214892 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
83214957 AT--CAC--ATATATGCATGTTCACATTCATCA
66 ATCACACATATATATACAGGTTCACATTCATCA
* *
83214986 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGTCCATTCGGCATT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
83215051 ATCACACATATATATATACAGGTTCACATTCATCA
66 ATCACAC--ATATATATACAGGTTCACATTCATCA
*
83215086 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
83215151 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACAGGTTCACATTCATCA
*
83215184 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
83215249 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACAGGTTCACATTCATCA
*
83215282 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
83215332 AAAATCCTAA
Statistics
Matches: 325, Mismatches: 15, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
94 60 0.18
96 3 0.01
98 171 0.53
100 91 0.28
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATATATACAGGTTCACATTCATCA
Found at i:83217403 original size:85 final size:85
Alignment explanation
Indices: 83217274--83217452 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
83217264 TATTTTATTG
* *
83217274 CCCATGCCCTTTATTTTATTAATCCTTACATAATTCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
83217339 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
83217359 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
83217424 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
83217444 CCCATGCTC
1 CCCATGCTC
83217453 ATGGCAGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:83222919 original size:16 final size:15
Alignment explanation
Indices: 83222898--83222928 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
83222888 AGAAATGTGT
83222898 ATTAATTTATAATTTA
1 ATTAATTT-TAATTTA
83222914 ATTAATTTTAATTTA
1 ATTAATTTTAATTTA
83222929 TTCCCTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTAATTTTAATTTA
Found at i:83225799 original size:50 final size:50
Alignment explanation
Indices: 83225724--83225825 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
83225714 AACATAAAGA
83225724 TTGTTCATCATTCAAACCTTTTTGGACTTATTCAATATCTATATATATCC
1 TTGTTCATCATTCAAACCTTTTTGGACTTATTCAATATCTATATATATCC
83225774 TTGTTCATCATTCAAACCTTTTTGGACTTATTCAATATCTATATATATCC
1 TTGTTCATCATTCAAACCTTTTTGGACTTATTCAATATCTATATATATCC
83225824 TT
1 TT
83225826 ATCACGAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.27, C:0.20, G:0.06, T:0.47
Consensus pattern (50 bp):
TTGTTCATCATTCAAACCTTTTTGGACTTATTCAATATCTATATATATCC
Found at i:83228111 original size:18 final size:18
Alignment explanation
Indices: 83228088--83228124 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
83228078 TTTAAATTGT
83228088 TTTTTATTATTATATGTG
1 TTTTTATTATTATATGTG
83228106 TTTTTATTATTATATGTG
1 TTTTTATTATTATATGTG
83228124 T
1 T
83228125 ATGGAAAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.68
Consensus pattern (18 bp):
TTTTTATTATTATATGTG
Found at i:83231211 original size:30 final size:30
Alignment explanation
Indices: 83231175--83231234 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
83231165 TCATGAATGG
83231175 AGCTTAACTCGACATTCCCTTATCTCCTCA
1 AGCTTAACTCGACATTCCCTTATCTCCTCA
83231205 AGCTTAACTCGACATTCCCTTATCTCCTCA
1 AGCTTAACTCGACATTCCCTTATCTCCTCA
83231235 TTCTGTCCCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.37, G:0.07, T:0.33
Consensus pattern (30 bp):
AGCTTAACTCGACATTCCCTTATCTCCTCA
Found at i:83232806 original size:43 final size:42
Alignment explanation
Indices: 83232736--83232849 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 42
83232726 AGCTCGTACA
* * * * * *
83232736 ATGCTAATGTCCCAGACGTGATTTTACATGTAATCAAATACCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATA-CG
*
83232779 ATGCCACTGTCCCAGACA-GAGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCCAGACATG-GTCTTACACGAAATCAAATACG
83232821 ATGCCAATGTCCCAGACATGGTCTTACAC
1 ATGCCAATGTCCCAGACATGGTCTTACAC
83232850 ATAAATCATA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 29 0.48
43 32 0.52
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:83233059 original size:29 final size:29
Alignment explanation
Indices: 83233008--83233082 Score: 120
Period size: 29 Copynumber: 2.7 Consensus size: 29
83232998 TATCTCATAC
83233008 TCAA-ATCATATA-ATC-ATTCATCATTGT
1 TCAAGATCATATAGA-CAATTCATCATTGT
83233035 TCAAGATCATATAGACAATTCATCATTGT
1 TCAAGATCATATAGACAATTCATCATTGT
83233064 TCAAGATCATATAGACAAT
1 TCAAGATCATATAGACAAT
83233083 AATAATTCAA
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
27 4 0.09
28 9 0.20
29 32 0.71
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (29 bp):
TCAAGATCATATAGACAATTCATCATTGT
Found at i:83233073 original size:16 final size:16
Alignment explanation
Indices: 83233025--83233073 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
83233015 ATATAATCAT
83233025 TCATCATTGTTCAAGA
1 TCATCATTGTTCAAGA
* * *
83233041 TCAT-ATAG-ACAA-T
1 TCATCATTGTTCAAGA
83233054 TCATCATTGTTCAAGA
1 TCATCATTGTTCAAGA
83233070 TCAT
1 TCAT
83233074 ATAGACAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 6
0.67 0.17 0.17
Matches are distributed among these distances:
13 4 0.17
14 6 0.25
15 6 0.25
16 8 0.33
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (16 bp):
TCATCATTGTTCAAGA
Found at i:83237167 original size:21 final size:22
Alignment explanation
Indices: 83237123--83237168 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
83237113 GTTCTCAGTG
* *
83237123 TTCACTTTGGTACATGAGTTTT
1 TTCAATTTGATACATGAGTTTT
* *
83237145 TTCAATTTGATACTTGATTTTT
1 TTCAATTTGATACATGAGTTTT
83237167 TT
1 TT
83237169 TGTCATGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.11, G:0.13, T:0.57
Consensus pattern (22 bp):
TTCAATTTGATACATGAGTTTT
Found at i:83238535 original size:2 final size:2
Alignment explanation
Indices: 83238528--83238566 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
83238518 GAAAGCCTTA
*
83238528 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83238567 ATTGACCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:83246756 original size:10 final size:10
Alignment explanation
Indices: 83246729--83246764 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
83246719 AATGATAACA
83246729 AAACAACAAC
1 AAACAACAAC
*
83246739 ATAACAACAAT
1 A-AACAACAAC
83246750 AAACAACAAC
1 AAACAACAAC
83246760 AAACA
1 AAACA
83246765 GTAGTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.69, C:0.25, G:0.00, T:0.06
Consensus pattern (10 bp):
AAACAACAAC
Found at i:83248309 original size:41 final size:41
Alignment explanation
Indices: 83248252--83248334 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
83248242 ATCCCGTCAA
83248252 CCTTCCAAGGTTAATCCCAAACAATCGTATGTGGAAGTGTT
1 CCTTCCAAGGTTAATCCCAAACAATCGTATGTGGAAGTGTT
83248293 CCTTCCAAGGTTAATCCCAAACAATCGTATGTGGAAGTGTT
1 CCTTCCAAGGTTAATCCCAAACAATCGTATGTGGAAGTGTT
83248334 C
1 C
83248335 GCAACAAAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (41 bp):
CCTTCCAAGGTTAATCCCAAACAATCGTATGTGGAAGTGTT
Found at i:83253037 original size:31 final size:31
Alignment explanation
Indices: 83253002--83253060 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
83252992 ATTTATTTAT
*
83253002 TGAATTATTTAAAAAATTTTATTTAAGTCAC
1 TGAATTACTTAAAAAATTTTATTTAAGTCAC
**
83253033 TGAATTACTTAAAAGTTTTTATTTAAGT
1 TGAATTACTTAAAAAATTTTATTTAAGT
83253061 GCTTAGTCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.47
Consensus pattern (31 bp):
TGAATTACTTAAAAAATTTTATTTAAGTCAC
Found at i:83254593 original size:16 final size:17
Alignment explanation
Indices: 83254567--83254603 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
83254557 GTTTTTTATT
83254567 TTTTGGATTTAAGGTTA
1 TTTTGGATTTAAGGTTA
*
83254584 TTTT-GATTTAGGGTTA
1 TTTTGGATTTAAGGTTA
83254600 TTTT
1 TTTT
83254604 AGGTTATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.19, C:0.00, G:0.22, T:0.59
Consensus pattern (17 bp):
TTTTGGATTTAAGGTTA
Found at i:83254954 original size:62 final size:61
Alignment explanation
Indices: 83254854--83254986 Score: 203
Period size: 62 Copynumber: 2.2 Consensus size: 61
83254844 TTATTGTCTA
* * *
83254854 TTATTGTCTACCATGTGCATGAAAAAAATGGTTGTGTTTGTATTAAATTATTTTTGTATTGG
1 TTATTGTCTGCCATGTGCATGAAAAAAATGGTTATGTTTGTATTAAATTA-TTTTCTATTGG
* *
83254916 TTATTGTCTGCCATGTGCATGACAAAAATGGTTATGTTTGTATTAATTTATTTTCTATTGG
1 TTATTGTCTGCCATGTGCATGAAAAAAATGGTTATGTTTGTATTAAATTATTTTCTATTGG
*
83254977 TTATTATCTG
1 TTATTGTCTG
83254987 ACAGAAATGG
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
61 19 0.29
62 46 0.71
ACGTcount: A:0.26, C:0.08, G:0.18, T:0.48
Consensus pattern (61 bp):
TTATTGTCTGCCATGTGCATGAAAAAAATGGTTATGTTTGTATTAAATTATTTTCTATTGG
Found at i:83256825 original size:17 final size:17
Alignment explanation
Indices: 83256793--83256824 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
83256783 TTTAATTGCA
83256793 TGTAGTGACTATTTTTG
1 TGTAGTGACTATTTTTG
83256810 TGTA-TGACTATTTTT
1 TGTAGTGACTATTTTT
83256825 TAATATACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.56
Consensus pattern (17 bp):
TGTAGTGACTATTTTTG
Found at i:83257023 original size:72 final size:67
Alignment explanation
Indices: 83256780--83257070 Score: 422
Period size: 67 Copynumber: 4.3 Consensus size: 67
83256770 TTAGTGAGTG
* * * ** * *
83256780 TTTTTTAAT-TGCATGTAGTGACTATTTTTGTGTATGACTATTTTTTAATATACATGTTGTTGAC
1 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTTAATATACATGTTGTTGAC
83256844 TA
66 TA
* * *
83256846 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATGACTGTTTTTTAATATACATGCTATTGAC
1 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTTAATATACATGTTGTTGAC
83256911 TA
66 TA
83256913 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTTAAATATACATGTTGTTGA
1 TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTT-AATATACATGTTGTTGA
83256978 CTA
65 CTA
*
83256981 TTTTTTTAATAATATGCATGTAGTGATTGTTGGTGTGTATAACTGTTTATTTAATATACATGTTG
1 --TTTTT--TAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTT-TTTAATATACATGTTG
83257046 TTGACTA
61 TTGACTA
83257053 TTTTTTAATATGCATGCA
1 TTTTTTAATATGCATGCA
83257071 ATGAGTATTT
Statistics
Matches: 205, Mismatches: 13, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
66 9 0.04
67 95 0.46
68 30 0.15
70 10 0.05
72 58 0.28
73 3 0.01
ACGTcount: A:0.25, C:0.08, G:0.18, T:0.50
Consensus pattern (67 bp):
TTTTTTAATATGCATGCAGTGATTGTTGGTGTGTATAACTGTTTTTTAATATACATGTTGTTGAC
TA
Found at i:83261061 original size:127 final size:126
Alignment explanation
Indices: 83260887--83261119 Score: 306
Period size: 127 Copynumber: 1.8 Consensus size: 126
83260877 AAAACTTCCC
* * * * * *
83260887 AAAATAAGGTAATATTTCGTATTTGGAAATTCAAGAAATCGTGCCCTAATGTGCTGGGTTTCGAT
1 AAAATAAGGCAATATTTCATATTTAGAAATTCAAGAAATCCTACCCTAACGTGCTGGGTTTCGAT
* * *
83260952 TTTCCAT-TTAACCGAATAACTAAATATCCTTTCGAAATTTCATCCATGTTTTCTTAAATTAA
66 TTT-C-TGTTAACCAAATAACCAAATATCCTTTCAAAATTTCATCCATGTTTTCTTAAATTAA
* * **
83261014 AAAATAAGGCAATGTTTCATGTTTAGAAATTTGAGAAATCCTACCCTAACGTGCTGGGTTTCGAT
1 AAAATAAGGCAATATTTCATATTTAGAAATTCAAGAAATCCTACCCTAACGTGCTGGGTTTCGAT
* *
83261079 TTTCTGTTGACCAAATAACCAAATATCCTTTTAAAATTTCA
66 TTTCTGTTAACCAAATAACCAAATATCCTTTCAAAATTTCA
83261120 ATGCATGAAT
Statistics
Matches: 90, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
125 1 0.01
126 31 0.34
127 58 0.64
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (126 bp):
AAAATAAGGCAATATTTCATATTTAGAAATTCAAGAAATCCTACCCTAACGTGCTGGGTTTCGAT
TTTCTGTTAACCAAATAACCAAATATCCTTTCAAAATTTCATCCATGTTTTCTTAAATTAA
Found at i:83264485 original size:12 final size:12
Alignment explanation
Indices: 83264470--83264501 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
83264460 GCAAAAGGAG
83264470 ATGCAAGAACAA
1 ATGCAAGAACAA
*
83264482 ATGCAAGAACAG
1 ATGCAAGAACAA
83264494 ATGCAAGA
1 ATGCAAGA
83264502 GATAATGGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.53, C:0.16, G:0.22, T:0.09
Consensus pattern (12 bp):
ATGCAAGAACAA
Found at i:83264485 original size:24 final size:24
Alignment explanation
Indices: 83264453--83264501 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
83264443 GAAAGGTTGA
*
83264453 AACAAATGCAA-AAGGAGATGCAAG
1 AACAAATGCAAGAA-CAGATGCAAG
83264477 AACAAATGCAAGAACAGATGCAAG
1 AACAAATGCAAGAACAGATGCAAG
83264501 A
1 A
83264502 GATAATGGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.55, C:0.14, G:0.22, T:0.08
Consensus pattern (24 bp):
AACAAATGCAAGAACAGATGCAAG
Found at i:83273213 original size:134 final size:135
Alignment explanation
Indices: 83272817--83273233 Score: 493
Period size: 134 Copynumber: 3.1 Consensus size: 135
83272807 CTCCATGAGG
* * * * * *
83272817 TAGCAATGGAGCAGATCGAAGATGGTGAATCTTATCTTCTAGAGGTAGTAGGGGAGCAGATTTTA
1 TAGCAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCTCGAGGTAGCAAGGGAGCAGATTTTA
* * *
83272882 GCCACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGTAGACTGAAGATTGTAGATTTTGTC-TCCT
66 GCCACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGATTGAAGATTGTAGATTTTGTCTTCTT
83272946 CGAGA
131 CGAGA
* ** * * ** *
83272951 AAATAGTGGAGTAAATCGAAAGCGGCGAATCTTATCTTCTCGAGGTATCAAGGGAGCAGATTTTA
1 TAGCAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCTCGAGGTAGCAAGGGAGCAGATTTTA
** *
83273016 GCCACTAGCCTTATCTCCCCAAAGTAGCAAGGGAGCAGATTGAAGATTGTAGATTTTGT-TTCTT
66 GCCACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGATTGAAGATTGTAGATTTTGTCTTCTT
83273080 CGAGA
131 CGAGA
* * * *
83273085 TAGCAGTGGGGCAGATAGAAAATGGCGAATCTTATCTTCTCGGGGCAGCAAGGGAGCAGATTTTA
1 TAGCAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCTCGAGGTAGCAAGGGAGCAGATTTTA
* * * * * * * *
83273150 GCCACCAGCCTTATCTCTCTGAGGTAGCAAAGGAGCAGGTTAAAGATCGTAG-TCTTATCTTCTT
66 GCCACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGATTGAAGATTGTAGATTTTGTCTTCTT
*
83273214 -GAGG
131 CGAGA
83273218 TAGCAAG-GGAGCAGAT
1 TAGC-AGTGGAGCAGAT
83273234 TGAAGATTGG
Statistics
Matches: 235, Mismatches: 45, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
133 19 0.08
134 216 0.92
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (135 bp):
TAGCAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCTCGAGGTAGCAAGGGAGCAGATTTTA
GCCACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGATTGAAGATTGTAGATTTTGTCTTCTT
CGAGA
Found at i:83273263 original size:44 final size:44
Alignment explanation
Indices: 83273159--83273263 Score: 113
Period size: 44 Copynumber: 2.4 Consensus size: 44
83273149 AGCCACCAGC
* * *
83273159 CTTATCTCTCTGAGGTAGCAAAGGAGCAGGTTAAAGATCGTAGT
1 CTTATCTCCCTGAGGTAGCAAAGGAGCAGATTAAAGATCGGAGT
* * * * *
83273203 CTTATCTTCTTGAGGTAGCAAGGGAGCAGATTGAAGATTGGAGAT
1 CTTATCTCCCTGAGGTAGCAAAGGAGCAGATTAAAGATCGGAG-T
*
83273248 TTTATCTCCCT-AGGTA
1 CTTATCTCCCTGAGGTA
83273264 ATAGGGAACA
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
44 40 0.82
45 9 0.18
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (44 bp):
CTTATCTCCCTGAGGTAGCAAAGGAGCAGATTAAAGATCGGAGT
Found at i:83273276 original size:43 final size:44
Alignment explanation
Indices: 83273223--83273322 Score: 105
Period size: 43 Copynumber: 2.3 Consensus size: 44
83273213 TGAGGTAGCA
* * * *
83273223 AGGGAGCAGATTGAAGATTGGAG-ATTTTATC-TCCCTAGGTAAT
1 AGGGAACAGATTGAAGA-CGGAGAATCTTATCTTCCCGAGGTAAT
* * *
83273266 AGGGAACAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAGT
1 AGGGAACAGATTGAAGACGGAGAATCTTATCTTCCCGAGGTAAT
83273310 AGGGAAGCAGATT
1 AGGGAA-CAGATT
83273323 TAAGTCATCA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
42 3 0.07
43 22 0.48
44 16 0.35
45 5 0.11
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.25
Consensus pattern (44 bp):
AGGGAACAGATTGAAGACGGAGAATCTTATCTTCCCGAGGTAAT
Found at i:83281993 original size:40 final size:40
Alignment explanation
Indices: 83281922--83282107 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
83281912 GCTACTTGCT
83281922 CAAATGCCTTC-GGACTTAG-CCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
83281960 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
83282000 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
83282040 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
83282079 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
83282108 CATCCGAATA
Statistics
Matches: 138, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
38 12 0.09
39 42 0.30
40 83 0.60
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:83282080 original size:39 final size:40
Alignment explanation
Indices: 83281889--83282103 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
83281879 AAACCAAGTA
* * * *
83281889 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
83281928 CCTTC-GGACTTAG-CCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
83281966 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
83282006 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
83282046 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
83282085 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
83282104 TTATCATCCG
Statistics
Matches: 163, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
37 1 0.01
38 32 0.20
39 48 0.29
40 82 0.50
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:83282083 original size:79 final size:80
Alignment explanation
Indices: 83281889--83282103 Score: 298
Period size: 79 Copynumber: 2.7 Consensus size: 80
83281879 AAACCAAGTA
* * * * *
83281889 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTC-GGACTTAG-CCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
83281950 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
* *
83281966 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
83282031 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
83282046 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
83282104 TTATCATCCG
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
77 13 0.10
78 26 0.21
79 53 0.43
80 32 0.26
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:83283861 original size:12 final size:12
Alignment explanation
Indices: 83283844--83283869 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
83283834 ATTTTCGCCC
83283844 CCGAAAATCTTA
1 CCGAAAATCTTA
83283856 CCGAAAATCTTA
1 CCGAAAATCTTA
83283868 CC
1 CC
83283870 AAGTAGCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.31, G:0.08, T:0.23
Consensus pattern (12 bp):
CCGAAAATCTTA
Found at i:83289994 original size:39 final size:40
Alignment explanation
Indices: 83289932--83290146 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
83289922 AAACCAAGTA
* * * *
83289932 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
83289971 CCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
83290010 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
83290050 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
83290090 CCTTCGGG-CTTAGCCCGAAT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
83290128 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
83290147 TTATCATCCG
Statistics
Matches: 162, Mismatches: 10, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 31 0.19
39 50 0.31
40 81 0.50
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:83290031 original size:40 final size:40
Alignment explanation
Indices: 83289965--83290150 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
83289955 GCTACTTGCT
83289965 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
83290004 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
83290044 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
83290084 CAAATGCCTTCGGG-CTTAGCCCGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
83290122 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
83290151 CATCCGAATA
Statistics
Matches: 138, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
38 24 0.17
39 32 0.23
40 82 0.59
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:83290140 original size:118 final size:118
Alignment explanation
Indices: 83289932--83290150 Score: 325
Period size: 118 Copynumber: 1.9 Consensus size: 118
83289922 AAACCAAGTA
* * * **
83289932 CCTTCGGAATTTAGCCGGATATAGCTACTTGCTCAAATGCCTTCGGACTTAGCCCGGTTATAGTA
1 CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGACTTAGCCCGAATATAGTA
*
83289997 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
66 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
83290050 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGCTTAGCCCGAAT-TAG
1 CCTTCGGAACTTAG-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGACTTAGCCCGAATATAG
*
83290113 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
64 TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
83290151 CATCCGAATA
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
118 52 0.58
119 38 0.42
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (118 bp):
CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGACTTAGCCCGAATATAGTA
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:83311300 original size:43 final size:42
Alignment explanation
Indices: 83311242--83311389 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 42
83311232 CAATGCCGAC
*
83311242 GTCCCAGAC-GTGGTCTTACATGTAACTCAATATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACATGTAACTC-ATATCGATGCCTAT
* *
83311285 GTCCCAGACAGGGTCTTACATG-AAATCATATACGATGCCGAT
1 GTCCCAGACAGGGTCTTACATGTAACTCATAT-CGATGCCTAT
* * *
83311327 GTCCCAGACATGGTCTTATATGTTAATCTCA-ATCGA-GCTCTGT
1 GTCCCAGACAGGGTCTTACATG-TAA-CTCATATCGATGC-CTAT
*
83311370 GTCCCAGACACGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
83311390 CGATGTCTTA
Statistics
Matches: 89, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
41 4 0.04
42 34 0.38
43 43 0.48
44 5 0.06
45 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACATGTAACTCATATCGATGCCTAT
Found at i:83311377 original size:85 final size:85
Alignment explanation
Indices: 83311234--83311389 Score: 219
Period size: 85 Copynumber: 1.8 Consensus size: 85
83311224 AACAAGTACA
* *
83311234 ATGCCGACGTCCCAGACGTGGTCTTACATGTAACTCAATATCGATGCCTCTGTCCCAGACAGGGT
1 ATGCCGACGTCCCAGACATGGTCTTACATGTAACTCAATATCGATGCCTCTGTCCCAGACACGGT
83311299 CTTACATGAAATCATATACG
66 CTTACATGAAATCATATACG
* * *
83311319 ATGCCGATGTCCCAGACATGGTCTTATATGTTAATCTC-A-ATCGA-GCTCTGTGTCCCAGACAC
1 ATGCCGACGTCCCAGACATGGTCTTACATG-TAA-CTCAATATCGATGC-CTCTGTCCCAGACAC
83311381 GGTCTTACA
63 GGTCTTACA
83311390 CGATGTCTTA
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
84 2 0.03
85 54 0.86
86 4 0.06
87 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.28
Consensus pattern (85 bp):
ATGCCGACGTCCCAGACATGGTCTTACATGTAACTCAATATCGATGCCTCTGTCCCAGACACGGT
CTTACATGAAATCATATACG
Found at i:83313397 original size:44 final size:45
Alignment explanation
Indices: 83313323--83313446 Score: 126
Period size: 46 Copynumber: 2.7 Consensus size: 45
83313313 GCATATTTGT
* * * *
83313323 GTCGATGCCATGCCCTAAAGATGGTCTTACACTAAC-ACATCTCGTA-
1 GTCGATG-CATGTCCTAGACAT-GTCTTACACTAACTACATCT-GGAG
* *
83313369 GTCGATGCATGTCCTAGACATGTCTTACACTGACTTACCTCTGGAG
1 GTCGATGCATGTCCTAGACATGTCTTACACTAAC-TACATCTGGAG
* *
83313415 GCCGATACATGTCCTAGACATGTCTTACACTA
1 GTCGATGCATGTCCTAGACATGTCTTACACTA
83313447 GCACTCGTCT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
44 12 0.18
45 13 0.20
46 41 0.62
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (45 bp):
GTCGATGCATGTCCTAGACATGTCTTACACTAACTACATCTGGAG
Found at i:83317214 original size:40 final size:40
Alignment explanation
Indices: 83317143--83317236 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
83317133 CTATCTTGGT
*
83317143 ATCACACACTTAGTGCCTCATATAGCTGAAGCTATTCCAA
1 ATCACACACTTAGTGCCTCATATAGCCGAAGCTATTCCAA
* * **
83317183 TTCACACACTTAGTG-CT-ATTTATGGCCGAAGCTATTTTAA
1 ATCACACACTTAGTGCCTCA--TATAGCCGAAGCTATTCCAA
*
83317223 ATCGCACACTTAGT
1 ATCACACACTTAGT
83317237 ACCGAACATA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 42 0.93
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (40 bp):
ATCACACACTTAGTGCCTCATATAGCCGAAGCTATTCCAA
Found at i:83324937 original size:5 final size:5
Alignment explanation
Indices: 83324927--83324952 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
83324917 TGCATTGATT
83324927 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
83324953 GTCAATCAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:83328307 original size:33 final size:33
Alignment explanation
Indices: 83328268--83328332 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
83328258 TATCAGTGGG
*
83328268 GTATGGTTCAGATTGTATTCCATTGTAGGCTAT
1 GTATGGTTCAGATTGTATTCCATCGTAGGCTAT
*
83328301 GTATGGTTTAGATTGTATTCCATCGTAGGCTA
1 GTATGGTTCAGATTGTATTCCATCGTAGGCTA
83328333 GACTCTTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.22, C:0.12, G:0.25, T:0.42
Consensus pattern (33 bp):
GTATGGTTCAGATTGTATTCCATCGTAGGCTAT
Found at i:83331365 original size:45 final size:45
Alignment explanation
Indices: 83331301--83331390 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
83331291 TTTTTAACAT
* *
83331301 AGTCCTTTATGTTAAACCCACTCTATGTAGTTGGTGCCTGTGGGC
1 AGTCCTGTATGTTAAACCCACCCTATGTAGTTGGTGCCTGTGGGC
83331346 AGTCCTGTATGTTAAACCCACCCTATGTAGTTGGTGCCTGTGGGC
1 AGTCCTGTATGTTAAACCCACCCTATGTAGTTGGTGCCTGTGGGC
83331391 TACTTATATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.18, C:0.23, G:0.26, T:0.33
Consensus pattern (45 bp):
AGTCCTGTATGTTAAACCCACCCTATGTAGTTGGTGCCTGTGGGC
Found at i:83331878 original size:20 final size:18
Alignment explanation
Indices: 83331842--83331893 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
83331832 CAAAATTGTT
*
83331842 TTATAAAAAAAATAAAAA
1 TTATAAAAAAAAGAAAAA
83331860 TTATAGAAAAGAAAGAAAAA
1 TTATA-AAAA-AAAGAAAAA
** *
83331880 AAAGAAAAAAAAGA
1 TTATAAAAAAAAGA
83331894 CATTTTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 10 0.36
19 8 0.29
20 10 0.36
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (18 bp):
TTATAAAAAAAAGAAAAA
Found at i:83331892 original size:9 final size:9
Alignment explanation
Indices: 83331864--83331893 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
83331854 TAAAAATTAT
*
83331864 AGAAAAGAA
1 AGAAAAAAA
83331873 AGAAAAAAA
1 AGAAAAAAA
83331882 AGAAAAAAA
1 AGAAAAAAA
83331891 AGA
1 AGA
83331894 CATTTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (9 bp):
AGAAAAAAA
Found at i:83334781 original size:23 final size:23
Alignment explanation
Indices: 83334751--83334799 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
83334741 AAAACAGTTC
83334751 ATACTCATTGATGGTAGAAAGCA
1 ATACTCATTGATGGTAGAAAGCA
83334774 ATACTCATTGATGGTAGAAAGCA
1 ATACTCATTGATGGTAGAAAGCA
83334797 ATA
1 ATA
83334800 TCTACATATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (23 bp):
ATACTCATTGATGGTAGAAAGCA
Found at i:83334937 original size:29 final size:31
Alignment explanation
Indices: 83334896--83334959 Score: 96
Period size: 29 Copynumber: 2.1 Consensus size: 31
83334886 ATAATCTATA
* *
83334896 TTTTATAATTTTTAAAGAATTAAATTA-AAT
1 TTTTATAATTTTTAAAAAATTAAAATATAAT
83334926 TTTTATAA-TTTTAAAAAATTAAAATATAAT
1 TTTTATAATTTTTAAAAAATTAAAATATAAT
83334956 TTTT
1 TTTT
83334960 TATTTATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 16 0.52
30 15 0.48
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (31 bp):
TTTTATAATTTTTAAAAAATTAAAATATAAT
Found at i:83336928 original size:29 final size:29
Alignment explanation
Indices: 83336878--83336933 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
83336868 AGGAGAATAA
83336878 GTTGTGTTAGGATTTGAGAAAAAATTAGG
1 GTTGTGTTAGGATTTGAGAAAAAATTAGG
*
83336907 GTTGTGTTTAGGGTTTGA-AAAAAATTA
1 GTTGTG-TTAGGATTTGAGAAAAAATTA
83336934 ATTAAGAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.38
Consensus pattern (29 bp):
GTTGTGTTAGGATTTGAGAAAAAATTAGG
Found at i:83337310 original size:22 final size:20
Alignment explanation
Indices: 83337282--83337321 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
83337272 TGACATGTTA
83337282 TTTTTATTATTTTAATATAAAT
1 TTTTTATT-TTTT-ATATAAAT
83337304 TTTTTATTTTTTATATAA
1 TTTTTATTTTTTATATAA
83337322 GTAAAAGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 4 0.22
22 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTTATTTTTTATATAAAT
Found at i:83339993 original size:49 final size:49
Alignment explanation
Indices: 83339873--83340045 Score: 138
Period size: 49 Copynumber: 3.6 Consensus size: 49
83339863 CTTATTGTGT
* *
83339873 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATGAGA
1 GTCAGTGTAAGACCTGTTTGGGACATGACATCGACACCGATAGATGAAA
* * * * *
83339922 GTCAGTGTAACACCTATTTGGGACATGACATTGGC-CTCGATATA-GCAAA
1 GTCAGTGTAAGACCTGTTTGGGACATGACATCGACAC-CGATAGATG-AAA
* * * * *** **
83339971 GTCAGTGTAAGACATGTCTGGGACATGGCATCAACTTTGAT-G-TGCTA
1 GTCAGTGTAAGACCTGTTTGGGACATGACATCGACACCGATAGATGAAA
*
83340018 GCCAGTGTAAGACCATGTTTGGGACATG
1 GTCAGTGTAAGACC-TGTTTGGGACATG
83340046 GCGTTGGTAT
Statistics
Matches: 96, Mismatches: 23, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
47 13 0.14
48 15 0.16
49 68 0.71
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTTTGGGACATGACATCGACACCGATAGATGAAA
Found at i:83341629 original size:37 final size:37
Alignment explanation
Indices: 83341579--83341657 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
83341569 TTATTACGAA
* * *
83341579 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
83341616 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
83341653 GTCTT
1 GTCTT
83341658 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:83341854 original size:47 final size:47
Alignment explanation
Indices: 83341776--83342276 Score: 813
Period size: 47 Copynumber: 10.6 Consensus size: 47
83341766 CCCTTCGGGA
* * * * * * *
83341776 CTTATCACATTTATATACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83341823 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83341870 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83341917 CTTATCACATATATATACACTTTCATATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83341966 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83342013 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83342060 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83342107 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83342154 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83342201 CTTATCATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83342248 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
83342277 TATTCAAATA
Statistics
Matches: 424, Mismatches: 26, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
47 360 0.85
49 64 0.15
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83346283 original size:48 final size:48
Alignment explanation
Indices: 83346231--83346802 Score: 462
Period size: 48 Copynumber: 11.9 Consensus size: 48
83346221 TGGACTATAG
*
83346231 CGATATAAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * *
83346279 CGATAT--GTGTCAATGTAAGACCATGTCTGGGACATGGCATCGGCCT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * *
83346325 CGATAT--GTGTCAGTGTAAGACCATGTATGGGACATGGCATCGGCCT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * **
83346371 CGATAT--GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGTAC-
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCCT
* * * * *
83346417 CGATTTATGAGAGTCAGTGTAAGATCATGTTTGGAACATGGCATCGGCAT
1 CGA--TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * * * *
83346467 TGTTATGTGAACCAATATAAGACCATGTCTGGGACATGGCATCGGCCT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * * *
83346515 CAATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACAT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * * * **
83346563 TGTTAT-ATGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCAACACT
1 CGATATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CT
* * * **
83346612 -GATGTATGAGAGCTAGTGTAAAACCATGTCCGGGACATGGCATCAACCT
1 CGA--TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * * * * *
83346661 CAATATGCGATCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
1 CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * * * * *
83346709 TGTTAT-ATGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACAT
1 CGATATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * ** *
83346757 TGATGTATGAGAGCCAGTGGAAGACCATGTCCAGAACATGGCATCG
1 CGA--TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
83346803 ACATTTTACC
Statistics
Matches: 426, Mismatches: 82, Indels: 30
0.79 0.15 0.06
Matches are distributed among these distances:
46 124 0.29
47 3 0.01
48 191 0.45
49 4 0.01
50 102 0.24
51 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
CGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
Found at i:83346662 original size:146 final size:145
Alignment explanation
Indices: 83346233--83346802 Score: 599
Period size: 146 Copynumber: 4.0 Consensus size: 145
83346223 GACTATAGCG
* * * * * *
83346233 ATATAAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG--ATATGTGTCAATGTA
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGTTATATGTGTCAGTGTA
* * * * **
83346296 AGACCATGTCTGGGACATGGCATCGGC-CTCGA-TAT--GTGTCAGTGTAAGACCATGTATGGGA
66 AGACCATGTCTAGGACATGGCATCGACACT-GATTATGAGAGCCAGTGTAAGACCATGTCCGGGA
*
83346357 CATGGCATCGGCCTCG
130 CATGGCATCGGCCTCA
* * * *
83346373 ATAT--GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGTACCGA-T-TTATGA-GAGTCA
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATC-G-A-C-ATTGTTAT-ATGTGTCA
* * * * * * * *
83346433 GTGTAAGATCATGT-TTGGAACATGGCATCGGCATTG-TTATGTGAACCAATATAAGACCATGTC
61 GTGTAAGACCATGTCTAGG-ACATGGCATCGACACTGATTATGAGAGCCAGTGTAAGACCATGTC
*
83346496 TGGGACATGGCATCGGCCTCA
125 CGGGACATGGCATCGGCCTCA
*
83346517 ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATATGTGTCAGTGTA
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGTTATATGTGTCAGTGTA
* * *
83346582 AGACCATGTCTAGGACATGGCATCAACACTGATGTATGAGAGCTAGTGTAAAACCATGTCCGGGA
66 AGACCATGTCTAGGACATGGCATCGACACTGAT-TATGAGAGCCAGTGTAAGACCATGTCCGGGA
**
83346647 CATGGCATCAACCTCA
130 CATGGCATCGGCCTCA
* * * * *
83346663 ATATGCGATCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATATGTGTCAGTGTA
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGTTATATGTGTCAGTGTA
* * * *
83346728 AGACCATGTCTAGGACATGGCATCGACATTGATGTATGAGAGCCAGTGGAAGACCATGTCCAGAA
66 AGACCATGTCTAGGACATGGCATCGACACTGAT-TATGAGAGCCAGTGTAAGACCATGTCCGGGA
83346793 CATGGCATCG
130 CATGGCATCG
83346803 ACATTTTACC
Statistics
Matches: 362, Mismatches: 48, Indels: 34
0.82 0.11 0.08
Matches are distributed among these distances:
138 33 0.09
139 1 0.00
140 4 0.01
141 4 0.01
142 37 0.10
143 5 0.01
144 76 0.21
145 5 0.01
146 197 0.54
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (145 bp):
ATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGTTATATGTGTCAGTGTA
AGACCATGTCTAGGACATGGCATCGACACTGATTATGAGAGCCAGTGTAAGACCATGTCCGGGAC
ATGGCATCGGCCTCA
Found at i:83347370 original size:21 final size:19
Alignment explanation
Indices: 83347338--83347376 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
83347328 CCCTTGTCTT
*
83347338 AAATTTAGAAAATCATTAA
1 AAATTTAGAAAATAATTAA
83347357 AAATTGTATGAAAATAATTA
1 AAATT-TA-GAAAATAATTA
83347377 TAGGTTAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 2 0.12
21 10 0.59
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (19 bp):
AAATTTAGAAAATAATTAA
Found at i:83350092 original size:46 final size:47
Alignment explanation
Indices: 83349868--83350120 Score: 323
Period size: 48 Copynumber: 5.3 Consensus size: 47
83349858 TGTATTTATT
* **
83349868 TAATTAGATTA-ATTGCAACATTAAAACTTGGAACAAACTTTGTGGTCA
1 TAATTAGA-TACATTACAACATTAAAACTTGGAACAAACTTTGTAAT-A
* *
83349916 TAAATTAGAAACATTACAACATTAAAACTTGGAACAAAATTTGTAATA
1 T-AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
*
83349964 TAAATTAAATACATTACAACATTAAAACTTGGAACAAA-TTTCGTAATA
1 T-AATTAGATACATTACAACATTAAAACTTGGAACAAACTTT-GTAATA
*
83350012 TAATTTAGGTACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
1 TAA-TTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
** *
83350060 T-ATTAGATACATTACAACATTAAAACGAGGAACAAACTTTGTAATT
1 TAATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
*
83350106 TAAGTTAGGTACATT
1 TAA-TTAGATACATT
83350121 GGATTACATA
Statistics
Matches: 184, Mismatches: 14, Indels: 14
0.87 0.07 0.07
Matches are distributed among these distances:
46 41 0.22
47 7 0.04
48 95 0.52
49 41 0.22
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (47 bp):
TAATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATA
Found at i:83351504 original size:43 final size:43
Alignment explanation
Indices: 83351410--83351564 Score: 152
Period size: 43 Copynumber: 3.6 Consensus size: 43
83351400 TGAGTTGTGC
* * * *
83351410 TTACATGTAAGACCATGTTTGGGACATTGGCATTGTTTTGAGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTGAGA
*
83351453 TTACGTGTAAGACCATGTCAGGGACATTGGCATCGTATT-ATGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTGA-GA
** * * * *
83351496 TTTTGTGTAAGACCCTGTCTGGAACAGTGGCATCG-ATATGTGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT-TGAGA
* * *
83351539 TAACATGTAAGACCATATCTGGGACA
1 TTACGTGTAAGACCATGTCTGGGACA
83351565 CGACATTGTA
Statistics
Matches: 90, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
42 3 0.03
43 87 0.97
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTGAGA
Found at i:83368926 original size:27 final size:26
Alignment explanation
Indices: 83368882--83368933 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
83368872 CTCGCTGCAA
*
83368882 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
83368909 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
83368934 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:83375183 original size:27 final size:27
Alignment explanation
Indices: 83375153--83375330 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
83375143 ATATTGAGTC
* *
83375153 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
83375180 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
83375207 CGCAAACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
83375235 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
83375262 CGCACACTTAGTGCATCACAT--TCATTT
1 CGCACACTTAGTGC-T-ACATAATCAACT
* * *
83375289 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
83375316 CGCATACTTAGTGCT
1 CGCACACTTAGTGCT
83375331 GTACAATTTA
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
25 4 0.03
27 96 0.77
28 22 0.18
29 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:83381060 original size:40 final size:40
Alignment explanation
Indices: 83381001--83381225 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
83380991 CGGATATAAC
* * *
83381001 CACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGG-ATATGGT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
* * *
83381040 CACTAGCATAAATGCCTTCGGGTCTTAGCCCGG-ATATAG-
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
83381079 CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 C-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
83381120 AACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
*
83381160 -ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAAT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
83381199 CACTAGCACAAATGTCTTCGGGACTTA
1 CACTCGCACAAATGCCTTCGGGACTTA
83381226 ACCCCGTTAG
Statistics
Matches: 168, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 45 0.27
40 121 0.72
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
Found at i:83381187 original size:119 final size:119
Alignment explanation
Indices: 83381002--83381225 Score: 303
Period size: 119 Copynumber: 1.9 Consensus size: 119
83380992 GGATATAACC
* * * *
83381002 ACTCGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGTCTTA
1 ACTCGCACAAGGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTA
*
83381067 GCCCGG-A-TATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
66 GCCCGGAATTA-AGC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
83381121 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGA-ATTAGT-ACTCGCACAAATGCCTTCGGGACT
1 ACTCGCA-CAAGGCCTTCGGGACTTAGCCCGGATA-TAGTCACTAGCACAAATGCCTTCGGGACT
* *
83381184 TAGCCCGGAATTAATCACTAGCACAAATGTCTTCGGGACTTA
64 TAGCCCGGAATTAAGCACTAGCACAAATGCCTTCGGGACTTA
83381226 ACCCCGTTAG
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
119 61 0.66
120 29 0.32
121 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (119 bp):
ACTCGCACAAGGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTA
GCCCGGAATTAAGCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:83381193 original size:79 final size:80
Alignment explanation
Indices: 83380977--83381225 Score: 310
Period size: 79 Copynumber: 3.1 Consensus size: 80
83380967 ACCCAAGTAT
* * * * * * *
83380977 CTTCGAGATTTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGG-ATATGG
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
*
83381039 TCACTAGCATAAATGC
65 TCACTAGCACAAATGC
*
83381055 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * *
83381120 AACTCGCACCAATGC
66 CACTAGCACAAATGC
* *
83381135 CTTCGGGACTTAGCCCGGA-ATTAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAA
1 CTTCGGGACTTAGCCCGGATA-TAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
83381198 TCACTAGCACAAATGT
65 TCACTAGCACAAATGC
83381214 CTTCGGGACTTA
1 CTTCGGGACTTA
83381226 ACCCCGTTAG
Statistics
Matches: 148, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
78 10 0.07
79 80 0.54
80 56 0.38
81 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
CACTAGCACAAATGC
Found at i:83388024 original size:27 final size:27
Alignment explanation
Indices: 83387981--83388152 Score: 100
Period size: 27 Copynumber: 6.2 Consensus size: 27
83387971 CGCACAATCA
*
83387981 AGTGCTAATATAATCAACTCGCACACTT
1 AGTGCT-ACATAATCAACTCGCACACTT
* * *
83388009 AGTGCTACGTAATCAAATCGCATGACATT
1 AGTGCTACATAATCAACTCGCA-CAC-TT
*
83388038 AGTGCTACATAGT-AACTCGCACACTT
1 AGTGCTACATAATCAACTCGCACACTT
** * *
83388064 AGTGCCGCAT-GTCAAATCGCACCACTT
1 AGTGCTACATAATCAACTCGCA-CACTT
* * *
83388091 A-TGCATCCAAACATTC-ATTCGCACCACTT
1 AGTGC-TACATA-A-TCAACTCGCA-CACTT
* * * *
83388120 AGTGCAACATAGTCAAATCGCATACTT
1 AGTGCTACATAATCAACTCGCACACTT
83388147 AGTGCT
1 AGTGCT
83388153 GTACAATTTA
Statistics
Matches: 111, Mismatches: 23, Indels: 21
0.72 0.15 0.14
Matches are distributed among these distances:
25 2 0.02
26 20 0.18
27 34 0.31
28 21 0.19
29 29 0.26
30 5 0.05
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
AGTGCTACATAATCAACTCGCACACTT
Found at i:83396291 original size:15 final size:15
Alignment explanation
Indices: 83396251--83396292 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
83396241 CTTATCTTAT
*
83396251 TTATTTTATTTTTGA
1 TTATTTTATTGTTGA
**
83396266 TCGTTTT-TTGTTGA
1 TTATTTTATTGTTGA
83396280 TTATTTTATTGTT
1 TTATTTTATTGTT
83396293 TTTTGAGTGT
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.14, C:0.02, G:0.12, T:0.71
Consensus pattern (15 bp):
TTATTTTATTGTTGA
Found at i:83396635 original size:38 final size:38
Alignment explanation
Indices: 83396558--83396683 Score: 159
Period size: 38 Copynumber: 3.3 Consensus size: 38
83396548 TCGGTGGTCT
* *
83396558 TTAGCCGCGGATATAGCAACTCGCACAATGCCTTCGGAC
1 TTAGCCCCGGAT-TAGTAACTCGCACAATGCCTTCGGAC
*
83396597 -TAGCCCCGGATTAGTAACTCGCACCATGCCTTCGGGAC
1 TTAGCCCCGGATTAGTAACTCGCACAATGCCTTC-GGAC
83396635 TTAG-CCCGGAATTAGTAACTCGCACAAATG-CTTCGGAC
1 TTAGCCCCGG-ATTAGTAACTCGCAC-AATGCCTTCGGAC
*
83396673 TTAGCACCGGA
1 TTAGCCCCGGA
83396684 ATTAATCACT
Statistics
Matches: 77, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
37 20 0.26
38 28 0.36
39 26 0.34
40 3 0.04
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.21
Consensus pattern (38 bp):
TTAGCCCCGGATTAGTAACTCGCACAATGCCTTCGGAC
Found at i:83396684 original size:39 final size:39
Alignment explanation
Indices: 83396558--83396714 Score: 157
Period size: 39 Copynumber: 4.1 Consensus size: 39
83396548 TCGGTGGTCT
*
83396558 TTAGCCGCGG-ATATAGCAACTCGCACAATGCCTTC-GGAC
1 TTAGCC-CGGAAT-TAGTAACTCGCACAATGCCTTCGGGAC
*
83396597 -TAGCCCCGG-ATTAGTAACTCGCACCATGCCTTCGGGAC
1 TTAG-CCCGGAATTAGTAACTCGCACAATGCCTTCGGGAC
83396635 TTAGCCCGGAATTAGTAACTCGCACAAATG-CTTC-GGAC
1 TTAGCCCGGAATTAGTAACTCGCAC-AATGCCTTCGGGAC
* * * * *
83396673 TTAGCACCGGAATTAATCACTAGCAAAAT-TCTTCGGGAC
1 TTAGC-CCGGAATTAGTAACTCGCACAATGCCTTCGGGAC
83396712 TTA
1 TTA
83396715 ACCCCGTTAG
Statistics
Matches: 103, Mismatches: 7, Indels: 16
0.82 0.06 0.13
Matches are distributed among these distances:
37 20 0.19
38 33 0.32
39 47 0.46
40 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGAATTAGTAACTCGCACAATGCCTTCGGGAC
Found at i:83396707 original size:77 final size:77
Alignment explanation
Indices: 83396558--83396714 Score: 178
Period size: 77 Copynumber: 2.0 Consensus size: 77
83396548 TCGGTGGTCT
* * * **
83396558 TTAGCCGCGGATATAGCAACTCGCACAATGCCTTCGGACTAGCCCCGGATTAGTAACTCGCACCA
1 TTAGCCGCGGATATAGCAACTCGCACAATGCCTTCGGACTAGCACCGGATTAATAACTAGCAAAA
83396623 TGCCTTCGGGAC
66 TGCCTTCGGGAC
* *
83396635 TTAGCC-CGGA-ATTAGTAACTCGCACAAATG-CTTCGGACTTAGCACCGGAATTAATCACTAGC
1 TTAGCCGCGGATA-TAGCAACTCGCAC-AATGCCTTCGGAC-TAGCACCGG-ATTAATAACTAGC
*
83396697 AAAAT-TCTTCGGGAC
62 AAAATGCCTTCGGGAC
83396712 TTA
1 TTA
83396715 ACCCCGTTAG
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
75 1 0.01
76 24 0.35
77 30 0.44
78 13 0.19
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (77 bp):
TTAGCCGCGGATATAGCAACTCGCACAATGCCTTCGGACTAGCACCGGATTAATAACTAGCAAAA
TGCCTTCGGGAC
Found at i:83403501 original size:39 final size:40
Alignment explanation
Indices: 83403443--83403571 Score: 102
Period size: 40 Copynumber: 3.3 Consensus size: 40
83403433 AATCAAGCAT
* * *
83403443 CTTCGGGT-TT-AGCCGGATATAACCACTCGCA-CAAGGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
*** *
83403480 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
* * ** * * *
83403520 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
*
83403560 CTTCGGATCTTA
1 CTTCGGGTCTTA
83403572 GTCCGGATGT
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
37 8 0.11
38 2 0.03
39 16 0.21
40 49 0.65
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
Found at i:83403525 original size:40 final size:40
Alignment explanation
Indices: 83403478--83403622 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
83403468 CTCGCACAAG
* * * * *
83403478 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
83403518 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
83403558 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
83403599 GCCTTCGGGACTTAGCCCTGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
83403623 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.65
41 26 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:83407759 original size:32 final size:32
Alignment explanation
Indices: 83407684--83407778 Score: 127
Period size: 32 Copynumber: 3.0 Consensus size: 32
83407674 CAATTGAATC
*
83407684 TCCGTACATACATGTACCATATTGTACCAATT
1 TCCGTACATACCTGTACCATATTGTACCAATT
83407716 TCCGTACATACCTGTACCATATTGTACCAATT
1 TCCGTACATACCTGTACCATATTGTACCAATT
** * * * *
83407748 TTTGTAGATACCTGTATCATCTCGTACCAAT
1 TCCGTACATACCTGTACCATATTGTACCAAT
83407779 CTCATACTCA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (32 bp):
TCCGTACATACCTGTACCATATTGTACCAATT
Found at i:83407911 original size:28 final size:28
Alignment explanation
Indices: 83407880--83407981 Score: 109
Period size: 28 Copynumber: 3.6 Consensus size: 28
83407870 TTCTGGATGT
83407880 TTCGCACACTAAGTGCCATCCTCGTTAC
1 TTCGCACACTAAGTGCCATCCTCGTTAC
* *
83407908 TTCGCACACTAAGTGCCATTCTGGATGTA-
1 TTCGCACACTAAGTGCCATCCTCG-T-TAC
* * *
83407937 -TCGCACACGAAGTGCCATCCTTGATAC
1 TTCGCACACTAAGTGCCATCCTCGTTAC
**
83407964 TTCGCACGTTAAGTGCCA
1 TTCGCACACTAAGTGCCA
83407982 CATAAAATTA
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.03
28 56 0.92
29 1 0.02
30 2 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGTTAC
Found at i:83407931 original size:56 final size:56
Alignment explanation
Indices: 83407847--83407981 Score: 191
Period size: 56 Copynumber: 2.4 Consensus size: 56
83407837 ATGCCATATC
* * * *
83407847 CGATACTT-GCACACTAAGTGTCGTTCTGGATGTTTCGCACACTAAGTGCCATCCT
1 CGATACTTCGCACACTAAGTGCCATTCTGGATGTATCGCACACGAAGTGCCATCCT
*
83407902 CGTTACTTCGCACACTAAGTGCCATTCTGGATGTATCGCACACGAAGTGCCATCCT
1 CGATACTTCGCACACTAAGTGCCATTCTGGATGTATCGCACACGAAGTGCCATCCT
* **
83407958 TGATACTTCGCACGTTAAGTGCCA
1 CGATACTTCGCACACTAAGTGCCA
83407982 CATAAAATTA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
55 7 0.10
56 63 0.90
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (56 bp):
CGATACTTCGCACACTAAGTGCCATTCTGGATGTATCGCACACGAAGTGCCATCCT
Found at i:83414000 original size:32 final size:32
Alignment explanation
Indices: 83413964--83414041 Score: 138
Period size: 32 Copynumber: 2.4 Consensus size: 32
83413954 ATTGAATCTC
*
83413964 CGTACATACATGTACCATATTGTACCAATTTT
1 CGTACATACCTGTACCATATTGTACCAATTTT
83413996 CGTACATACCTGTACCATATTGTACCAATTTT
1 CGTACATACCTGTACCATATTGTACCAATTTT
*
83414028 CGTAGATACCTGTA
1 CGTACATACCTGTA
83414042 TATCTCGTAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (32 bp):
CGTACATACCTGTACCATATTGTACCAATTTT
Found at i:83414164 original size:28 final size:28
Alignment explanation
Indices: 83414133--83414259 Score: 128
Period size: 28 Copynumber: 4.5 Consensus size: 28
83414123 CTGATACCTT
* *
83414133 GCACACTAAGTGTCGTTCTGGATGTTTC
1 GCACACTAAGTGCCATTCTGGATGTTTC
* * * **
83414161 GCACACTAAGTGCCATCCTCGTTACTTC
1 GCACACTAAGTGCCATTCTGGATGTTTC
*
83414189 GCACACTAAGTGCCATTCTGGATGTATC
1 GCACACTAAGTGCCATTCTGGATGTTTC
* * **
83414217 GCACACTAAGTGCCATCCTCGATACTTC
1 GCACACTAAGTGCCATTCTGGATGTTTC
**
83414245 GCACGTTAAGTGCCA
1 GCACACTAAGTGCCA
83414260 CATATAATTA
Statistics
Matches: 79, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 79 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTGGATGTTTC
Found at i:83414193 original size:56 final size:56
Alignment explanation
Indices: 83414098--83414259 Score: 204
Period size: 56 Copynumber: 2.9 Consensus size: 56
83414088 TGAATATTCA
* * * *
83414098 ATGTATCGCACA-TTAGATGCCAT-ATCTGATACCTT-GCACACTAAGTGTCGTTCTGG
1 ATGTATCGCACACTAAG-TGCCATCCTC-GATA-CTTCGCACACTAAGTGCCATTCTGG
* *
83414154 ATGTTTCGCACACTAAGTGCCATCCTCGTTACTTCGCACACTAAGTGCCATTCTGG
1 ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCATTCTGG
**
83414210 ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACGTTAAGTGCCA
1 ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCA
83414260 CATATAATTA
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
55 3 0.03
56 85 0.91
57 5 0.05
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (56 bp):
ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCATTCTGG
Done.