Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 254 of 343
Found at i:83974301 original size:46 final size:46
Alignment explanation
Indices: 83974246--83974339 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
83974236 CATTATGGTT
*
83974246 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
83974292 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
83974338 TA
1 TA
83974340 GTGTTTGAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.29, C:0.02, G:0.27, T:0.43
Consensus pattern (46 bp):
TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
Found at i:83974395 original size:7 final size:7
Alignment explanation
Indices: 83974366--83974494 Score: 66
Period size: 7 Copynumber: 18.1 Consensus size: 7
83974356 GATGAATTAT
83974366 GGGTTTA
1 GGGTTTA
*
83974373 GGGATTA
1 GGGTTTA
* *
83974380 TGATTTA
1 GGGTTTA
83974387 GGGTTTA
1 GGGTTTA
*
83974394 GGGGTTA
1 GGGTTTA
83974401 GGG-TT-
1 GGGTTTA
83974406 GGAGTTTA
1 GG-GTTTA
* *
83974414 AGGTGTAA
1 GGGT-TTA
*
83974422 GGGTTTG
1 GGGTTTA
*
83974429 GGGTTAA
1 GGGTTTA
*
83974436 GGGTTAA
1 GGGTTTA
83974443 GGGTTTA
1 GGGTTTA
*
83974450 GAGTTTA
1 GGGTTTA
*
83974457 GTGTTTA
1 GGGTTTA
*
83974464 TGGG-ATA
1 -GGGTTTA
*
83974471 GGGGTTAAA
1 -GGGTT-TA
*
83974480 AGGTTTA
1 GGGTTTA
83974487 GGGTTTA
1 GGGTTTA
83974494 G
1 G
83974495 ATTGATTAGT
Statistics
Matches: 90, Mismatches: 25, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
5 2 0.02
6 3 0.03
7 72 0.80
8 12 0.13
9 1 0.01
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.37
Consensus pattern (7 bp):
GGGTTTA
Found at i:83974700 original size:15 final size:15
Alignment explanation
Indices: 83974680--83974726 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
83974670 ATATTAAAAA
83974680 TAATTCAATTCCAAT
1 TAATTCAATTCCAAT
* *
83974695 TAATTC-ATCTACACT
1 TAATTCAAT-TCCAAT
83974710 TAATTCAATTCCAAT
1 TAATTCAATTCCAAT
83974725 TA
1 TA
83974727 GATCATTCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 2 0.08
15 22 0.85
16 2 0.08
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.40
Consensus pattern (15 bp):
TAATTCAATTCCAAT
Found at i:83980558 original size:13 final size:13
Alignment explanation
Indices: 83980542--83980587 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
83980532 ATGTTGTTGA
83980542 TGCATGTAAATTC
1 TGCATGTAAATTC
83980555 TGCATGTAAA---
1 TGCATGTAAATTC
*
83980565 TAC-TGTAAATTC
1 TGCATGTAAATTC
83980577 TGCATGTAAAT
1 TGCATGTAAAT
83980588 GGGCATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
9 6 0.22
10 2 0.07
12 2 0.07
13 17 0.63
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (13 bp):
TGCATGTAAATTC
Found at i:83980574 original size:22 final size:22
Alignment explanation
Indices: 83980546--83980587 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
83980536 TGTTGATGCA
83980546 TGTAAATTCTGCATGTAAATAC
1 TGTAAATTCTGCATGTAAATAC
83980568 TGTAAATTCTGCATGTAAAT
1 TGTAAATTCTGCATGTAAAT
83980588 GGGCATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (22 bp):
TGTAAATTCTGCATGTAAATAC
Found at i:83981190 original size:16 final size:16
Alignment explanation
Indices: 83981171--83981201 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83981161 ATTCTATCAT
*
83981171 TATTTTGTTCTATTTG
1 TATTTTGTTATATTTG
83981187 TATTTTGTTATATTT
1 TATTTTGTTATATTT
83981202 CTGGTGTAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.03, G:0.10, T:0.71
Consensus pattern (16 bp):
TATTTTGTTATATTTG
Found at i:83981330 original size:10 final size:10
Alignment explanation
Indices: 83981317--83981341 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
83981307 TTTTCAGGAC
83981317 TTTTACAATA
1 TTTTACAATA
83981327 TTTTACAATA
1 TTTTACAATA
83981337 TTTTA
1 TTTTA
83981342 TTTTTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTACAATA
Found at i:83981426 original size:43 final size:43
Alignment explanation
Indices: 83981358--83981454 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 43
83981348 TTAATTTTTA
* * *
83981358 TGACCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGGTCT
1 TGACCTTTAGCGGCGTTTCTGGGAAAAGCGCCGCTAAAGGTCC
*
83981401 TGACCTTTATCGGCGTTTACT-GGAAAAGCGCCGCTAAAGGTCC
1 TGACCTTTAGCGGCGTTT-CTGGGAAAAGCGCCGCTAAAGGTCC
*
83981444 CGACCTTTAGC
1 TGACCTTTAGC
83981455 AGCATTTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.27
Consensus pattern (43 bp):
TGACCTTTAGCGGCGTTTCTGGGAAAAGCGCCGCTAAAGGTCC
Found at i:83985819 original size:21 final size:20
Alignment explanation
Indices: 83985783--83985872 Score: 74
Period size: 20 Copynumber: 4.3 Consensus size: 20
83985773 TCTTCAATCC
* *
83985783 TCAATTTCTAATTTTAGATTT
1 TCAATTTC-AAATTTAAATTT
83985804 TCAATCTTCAAATTTAAAATTT
1 TCAAT-TTCAAATTT-AAATTT
** *
83985826 AAAATTTAAAATTTAAATTT
1 TCAATTTCAAATTTAAATTT
*
83985846 TCAATTTTC-AATTTCAATTT
1 TCAA-TTTCAAATTTAAATTT
*
83985866 TGAATTT
1 TCAATTT
83985873 TCAATCCTCA
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
19 3 0.05
20 21 0.38
21 21 0.38
22 11 0.20
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (20 bp):
TCAATTTCAAATTTAAATTT
Found at i:83985851 original size:7 final size:7
Alignment explanation
Indices: 83985769--83985887 Score: 64
Period size: 7 Copynumber: 17.1 Consensus size: 7
83985759 TTCTCAATCC
*
83985769 TCAATCT
1 TCAATTT
**
83985776 TCAATCC
1 TCAATTT
83985783 TCAA-TT
1 TCAATTT
83985789 TCTAATTT
1 TC-AATTT
83985797 T-AGATTT
1 TCA-ATTT
*
83985804 TCAATCT
1 TCAATTT
*
83985811 TCAAATT
1 TCAATTT
* *
83985818 TAAAATT
1 TCAATTT
* *
83985825 TAAAATT
1 TCAATTT
* *
83985832 TAAAATT
1 TCAATTT
*
83985839 TAAATTT
1 TCAATTT
83985846 TCAATTT
1 TCAATTT
83985853 TCAA-TT
1 TCAATTT
83985859 TCAATTT
1 TCAATTT
*
83985866 TGAATTT
1 TCAATTT
**
83985873 TCAATCC
1 TCAATTT
83985880 TCAATTT
1 TCAATTT
83985887 T
1 T
83985888 TTAACTTTTT
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
6 9 0.10
7 79 0.86
8 4 0.04
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.49
Consensus pattern (7 bp):
TCAATTT
Found at i:83985873 original size:20 final size:20
Alignment explanation
Indices: 83985835--83985887 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
83985825 TAAAATTTAA
*
83985835 AATTTAAATTTTCAATTTTC
1 AATTTCAATTTTCAATTTTC
*
83985855 AATTTCAATTTTGAATTTTC
1 AATTTCAATTTTCAATTTTC
*
83985875 AATCCTCAATTTT
1 AAT-TTCAATTTT
83985888 TTAACTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 21 0.72
21 8 0.28
ACGTcount: A:0.32, C:0.13, G:0.02, T:0.53
Consensus pattern (20 bp):
AATTTCAATTTTCAATTTTC
Found at i:83995363 original size:2 final size:2
Alignment explanation
Indices: 83995351--83995389 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
83995341 TTATCTTTCT
* *
83995351 TA TA TA AA TA TA TA TC TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
83995390 TCAATTTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:83998081 original size:13 final size:13
Alignment explanation
Indices: 83998024--83998088 Score: 71
Period size: 13 Copynumber: 5.0 Consensus size: 13
83998014 CTTAAACCAA
*
83998024 ACTTTTTAAAAGT
1 ACTTTTTAAAAGC
*
83998037 ACTTCTTAAAAGC
1 ACTTTTTAAAAGC
*
83998050 ACTTTTGTACAAG-
1 ACTTTT-TAAAAGC
83998063 ACTTTTTAAAAGC
1 ACTTTTTAAAAGC
83998076 A-TTTTTCAAAAGC
1 ACTTTTT-AAAAGC
83998089 GTTGCTAAAC
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
12 10 0.23
13 29 0.66
14 5 0.11
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.38
Consensus pattern (13 bp):
ACTTTTTAAAAGC
Found at i:84000316 original size:3 final size:3
Alignment explanation
Indices: 84000308--84000344 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
84000298 AAACTGTTAG
84000308 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
84000345 AGCAATAGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:84000374 original size:3 final size:3
Alignment explanation
Indices: 84000366--84000390 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
84000356 CTGTTAGATG
84000366 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
84000391 AGGACTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:84001931 original size:12 final size:12
Alignment explanation
Indices: 84001914--84001938 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
84001904 TGTATGTAAG
84001914 TATTGTTGTTGT
1 TATTGTTGTTGT
84001926 TATTGTTGTTGT
1 TATTGTTGTTGT
84001938 T
1 T
84001939 TTTTTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (12 bp):
TATTGTTGTTGT
Found at i:84011120 original size:3 final size:3
Alignment explanation
Indices: 84011112--84011136 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
84011102 TACATATTTG
84011112 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
84011137 GTTTAGCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:84012406 original size:20 final size:20
Alignment explanation
Indices: 84012353--84012409 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
84012343 AATCTTTTCA
*
84012353 ACAAAA-ATCACAAAAGAATT
1 ACAAAATATCATAAAA-AATT
*
84012373 -CAAAATATTGATAAAAAATT
1 ACAAAATA-TCATAAAAAATT
84012393 ACAAAATATCATAAAAA
1 ACAAAATATCATAAAAA
84012410 GTTTTAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 5 0.16
20 13 0.42
21 13 0.42
ACGTcount: A:0.65, C:0.11, G:0.04, T:0.21
Consensus pattern (20 bp):
ACAAAATATCATAAAAAATT
Found at i:84014683 original size:24 final size:23
Alignment explanation
Indices: 84014636--84014685 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
84014626 TATGTACTTG
* **
84014636 TTTTATTTTTATTTTTTATGATA
1 TTTTATTTTTATTTCTTAAAATA
84014659 TTTTAATTTTTATTTCTTAAAATA
1 TTTT-ATTTTTATTTCTTAAAATA
84014683 TTT
1 TTT
84014686 CTCTAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTTATTTTTATTTCTTAAAATA
Found at i:84015977 original size:30 final size:30
Alignment explanation
Indices: 84015943--84016004 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
84015933 AGATAGAAGG
* * * *
84015943 GGAGTAAAAGTTTTGGGGGGAAAGTAGAAA
1 GGAGTAAAAATTTTGAGGGAAAAGTAAAAA
84015973 GGAGTAAAAATTTTGAGGGAAAAGTAAAAA
1 GGAGTAAAAATTTTGAGGGAAAAGTAAAAA
84016003 GG
1 GG
84016005 TTTAAGAGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.45, C:0.00, G:0.35, T:0.19
Consensus pattern (30 bp):
GGAGTAAAAATTTTGAGGGAAAAGTAAAAA
Found at i:84016060 original size:9 final size:9
Alignment explanation
Indices: 84016046--84016091 Score: 83
Period size: 9 Copynumber: 5.1 Consensus size: 9
84016036 TATAGTTTAA
84016046 TATTCGAAT
1 TATTCGAAT
84016055 TATTCGAAT
1 TATTCGAAT
84016064 TATTCGAAT
1 TATTCGAAT
*
84016073 TATTCGAGT
1 TATTCGAAT
84016082 TATTCGAAT
1 TATTCGAAT
84016091 T
1 T
84016092 CGAAAACTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:84017368 original size:2 final size:2
Alignment explanation
Indices: 84017356--84017386 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
84017346 TGCCCAAGTA
84017356 CT CT C- CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
84017387 TTTTAATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:84017796 original size:28 final size:28
Alignment explanation
Indices: 84017749--84017802 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
84017739 AGCCAATTCA
* * *
84017749 AAGTGAATGTTGGTATCATTTACAGACG
1 AAGTGAATGATGATACCATTTACAGACG
*
84017777 AAGTGAATGATGATACCATTTGCAGA
1 AAGTGAATGATGATACCATTTACAGA
84017803 AATAGTTAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (28 bp):
AAGTGAATGATGATACCATTTACAGACG
Found at i:84020128 original size:25 final size:25
Alignment explanation
Indices: 84020100--84020149 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
84020090 TTATACATCA
84020100 TTATA-TTAAATTATTTAAATTTTAT
1 TTATAGTT-AATTATTTAAATTTTAT
* *
84020125 TTATAGTTAATTTTTTTAATTTTAT
1 TTATAGTTAATTATTTAAATTTTAT
84020150 ATATCATTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (25 bp):
TTATAGTTAATTATTTAAATTTTAT
Found at i:84021091 original size:23 final size:23
Alignment explanation
Indices: 84021060--84021106 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
84021050 CTACCAATAG
* *
84021060 AAGTGCATAGAAGTATCAGTAGA
1 AAGTACATAAAAGTATCAGTAGA
84021083 AAGTACATAAAAGTATCAGTAGA
1 AAGTACATAAAAGTATCAGTAGA
84021106 A
1 A
84021107 CCAAGTCAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.09, G:0.21, T:0.21
Consensus pattern (23 bp):
AAGTACATAAAAGTATCAGTAGA
Found at i:84030183 original size:41 final size:41
Alignment explanation
Indices: 84030126--84030204 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 41
84030116 AATATAAATT
* *
84030126 TTTTATTTTTTCCTTTTTTGA-ATTATTTATATTTTATATAA
1 TTTTATTTTTTCCTTTTTT-ATATCATTTATATATTATATAA
84030167 TTTTATATTTTT-CTTTTTTATATCATTTATATATTATA
1 TTTTAT-TTTTTCCTTTTTTATATCATTTATATATTATA
84030205 AAAAAATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 1 0.03
41 28 0.82
42 5 0.15
ACGTcount: A:0.25, C:0.05, G:0.01, T:0.68
Consensus pattern (41 bp):
TTTTATTTTTTCCTTTTTTATATCATTTATATATTATATAA
Found at i:84034793 original size:26 final size:26
Alignment explanation
Indices: 84034762--84034869 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
84034752 TGAAATGCCC
*
84034762 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
84034788 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
84034814 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
84034840 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
84034866 ATCA
1 ATCA
84034870 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:84040222 original size:23 final size:25
Alignment explanation
Indices: 84040187--84040233 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
84040177 TCAAACATGC
84040187 ATTTAGGTCAATTTAAC-CCTAGGT
1 ATTTAGGTCAATTTAACTCCTAGGT
* *
84040211 ATTTCGGT-AATTTATCTCCTAGG
1 ATTTAGGTCAATTTAACTCCTAGG
84040234 GGTAAAACTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (25 bp):
ATTTAGGTCAATTTAACTCCTAGGT
Found at i:84041749 original size:26 final size:26
Alignment explanation
Indices: 84041718--84041825 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
84041708 TGAAATGCCC
*
84041718 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
84041744 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
84041770 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
84041796 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
84041822 ATCA
1 ATCA
84041826 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:84047220 original size:54 final size:54
Alignment explanation
Indices: 84047154--84047310 Score: 145
Period size: 54 Copynumber: 2.9 Consensus size: 54
84047144 ATCTTAACCT
* * * ** * * *
84047154 CTTATGATATTTTCAAAATCTCT-TGGTTTGTCGATTTTTTATCGCAACCTCCTA
1 CTTATGAGATTTTTAAAATCT-TACGGTTTACCGATTTATGATCACAACCTCCTA
* **
84047208 CTTATGAGATTTTTAGAATCTTACGGTTTACCGATTTATGATCACAACCTTTTA
1 CTTATGAGATTTTTAAAATCTTACGGTTTACCGATTTATGATCACAACCTCCTA
* * * * **
84047262 CTTATGAGATTTTTAAAATTTTATGGTTTGCCGGTTTACAATCACAACC
1 CTTATGAGATTTTTAAAATCTTACGGTTTACCGATTTATGATCACAACC
84047311 AATCACTTAA
Statistics
Matches: 84, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 1 0.01
54 83 0.99
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.43
Consensus pattern (54 bp):
CTTATGAGATTTTTAAAATCTTACGGTTTACCGATTTATGATCACAACCTCCTA
Found at i:84047319 original size:54 final size:53
Alignment explanation
Indices: 84047207--84047362 Score: 152
Period size: 54 Copynumber: 2.9 Consensus size: 53
84047197 GCAACCTCCT
* * * * ** *
84047207 ACTTATGAGATTTTTAGAATCTTACGGTTTACCGATTTATGATCACAACCTTTT
1 ACTTATGAGATTTTTAGAATTTTATGGTTTGCCGATTTA-AATCACAACCAATC
* *
84047261 ACTTATGAGATTTTTAAAATTTTATGGTTTGCCGGTTTACAATCACAACCAATC
1 ACTTATGAGATTTTTAGAATTTTATGGTTTGCCGATTTA-AATCACAACCAATC
** * * *
84047315 ACTTAAAAGATTTTCAGAATTTTGTAG-TTGCCGATTTAAGATCACAAC
1 ACTTATGAGATTTTTAGAATTTTATGGTTTGCCGATTTAA-ATCACAAC
84047363 TTTCTTGTAC
Statistics
Matches: 84, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
52 1 0.01
53 18 0.21
54 65 0.77
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.39
Consensus pattern (53 bp):
ACTTATGAGATTTTTAGAATTTTATGGTTTGCCGATTTAAATCACAACCAATC
Found at i:84047741 original size:24 final size:24
Alignment explanation
Indices: 84047692--84047746 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
84047682 ACAACCACCG
**
84047692 TAATTTTCTACTATACAGTTCACA
1 TAATTTTCTACTATACAACTCACA
*
84047716 TAATTTTCTACTTTACAACT-AGCA
1 TAATTTTCTACTATACAACTCA-CA
84047740 TAATTTT
1 TAATTTT
84047747 ACATTTTAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 1 0.04
24 26 0.96
ACGTcount: A:0.33, C:0.18, G:0.04, T:0.45
Consensus pattern (24 bp):
TAATTTTCTACTATACAACTCACA
Found at i:84049449 original size:9 final size:9
Alignment explanation
Indices: 84049435--84049466 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
84049425 AACTTGGTGC
84049435 ATTTTGTTT
1 ATTTTGTTT
84049444 ATTTTGTTT
1 ATTTTGTTT
84049453 ATTTTGTTT
1 ATTTTGTTT
84049462 ATTTT
1 ATTTT
84049467 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:84049547 original size:23 final size:23
Alignment explanation
Indices: 84049517--84049568 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
84049507 TGCAACTTGG
84049517 TTTCATAATAATAGCTA-ATATGC
1 TTTCATAATAATAGCTATA-ATGC
*
84049540 TTTCATAATGATAGCTATAATGC
1 TTTCATAATAATAGCTATAATGC
84049563 TTTCAT
1 TTTCAT
84049569 CTTTTGCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (23 bp):
TTTCATAATAATAGCTATAATGC
Found at i:84049580 original size:59 final size:59
Alignment explanation
Indices: 84049517--84049632 Score: 205
Period size: 59 Copynumber: 2.0 Consensus size: 59
84049507 TGCAACTTGG
*
84049517 TTTCATAATAATAGCTAATATGCTTTCATAATGATAGCTATAATGCTTTCATCTTTTGC
1 TTTCATAATAATAACTAATATGCTTTCATAATGATAGCTATAATGCTTTCATCTTTTGC
* *
84049576 TTTCATAATGATAACTAATATGCTTTCATAATGATAGTTATAATGCTTTCATCTTTT
1 TTTCATAATAATAACTAATATGCTTTCATAATGATAGCTATAATGCTTTCATCTTTT
84049633 TAATTATTAA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (59 bp):
TTTCATAATAATAACTAATATGCTTTCATAATGATAGCTATAATGCTTTCATCTTTTGC
Found at i:84054003 original size:23 final size:23
Alignment explanation
Indices: 84053973--84054024 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
84053963 TGCAACTTGG
84053973 TTTCATAATAATAGCTA-ATATGC
1 TTTCATAATAATAGCTATA-ATGC
*
84053996 TTTCATAATGATAGCTATAATGC
1 TTTCATAATAATAGCTATAATGC
84054019 TTTCAT
1 TTTCAT
84054025 CTTTTGCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (23 bp):
TTTCATAATAATAGCTATAATGC
Found at i:84054036 original size:59 final size:59
Alignment explanation
Indices: 84053973--84054088 Score: 205
Period size: 59 Copynumber: 2.0 Consensus size: 59
84053963 TGCAACTTGG
*
84053973 TTTCATAATAATAGCTAATATGCTTTCATAATGATAGCTATAATGCTTTCATCTTTTGC
1 TTTCATAATAATAACTAATATGCTTTCATAATGATAGCTATAATGCTTTCATCTTTTGC
* *
84054032 TTTCATAATGATAACTAATATGCTTTCATAATGATAGTTATAATGCTTTCATCTTTT
1 TTTCATAATAATAACTAATATGCTTTCATAATGATAGCTATAATGCTTTCATCTTTT
84054089 TAATTATTAA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (59 bp):
TTTCATAATAATAACTAATATGCTTTCATAATGATAGCTATAATGCTTTCATCTTTTGC
Found at i:84061331 original size:20 final size:22
Alignment explanation
Indices: 84061297--84061340 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
84061287 GCGCAACTCT
84061297 TTTTTTTAATATTAA-AAAATA
1 TTTTTTTAATATTAATAAAATA
*
84061318 TTTTTTTCAT-TTAATAAAATA
1 TTTTTTTAATATTAATAAAATA
84061339 TT
1 TT
84061341 ATTAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTTTTAATATTAATAAAATA
Found at i:84062074 original size:17 final size:17
Alignment explanation
Indices: 84062038--84062080 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
84062028 TAGAACTTGT
*
84062038 AGACGATGAAGACATGG
1 AGACGATGAAGACATAG
*
84062055 AGACGATGAAGACGTAG
1 AGACGATGAAGACATAG
*
84062072 AGACAATGA
1 AGACGATGA
84062081 TAGCTCTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.33, T:0.12
Consensus pattern (17 bp):
AGACGATGAAGACATAG
Found at i:84063890 original size:30 final size:28
Alignment explanation
Indices: 84063856--84063933 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 28
84063846 ATGATGCTAG
*
84063856 AGATATTTTGATATTTA-TAATTATTTAATT
1 AGATATTTT-AT-TTTATTAA-TATTTAATA
*
84063886 AGATAAATATTATTTTATTAATATTTAATA
1 AGAT--ATTTTATTTTATTAATATTTAATA
84063916 AGATATTTTATTATTATT
1 AGATATTTTATT-TTATT
84063934 TTATTAGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
28 7 0.17
29 5 0.12
30 20 0.49
31 5 0.12
32 4 0.10
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (28 bp):
AGATATTTTATTTTATTAATATTTAATA
Found at i:84063910 original size:11 final size:11
Alignment explanation
Indices: 84063896--84063939 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
84063886 AGATAAATAT
84063896 TATTTTATTAA
1 TATTTTATTAA
* *
84063907 TATTTAATAAGA
1 TATTTTATTA-A
*
84063919 TATTTTATTAT
1 TATTTTATTAA
84063930 TATTTTATTA
1 TATTTTATTA
84063940 GTATATAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:84066136 original size:46 final size:46
Alignment explanation
Indices: 84066069--84066285 Score: 319
Period size: 46 Copynumber: 4.7 Consensus size: 46
84066059 TGGCAACCTG
84066069 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
84066115 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
84066161 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** *
84066207 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
84066253 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
84066286 TCACGTCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 155 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:84066260 original size:138 final size:130
Alignment explanation
Indices: 84066020--84066285 Score: 372
Period size: 138 Copynumber: 2.0 Consensus size: 130
84066010 AGTGTGCTCT
*
84066020 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
* * * *
84066085 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGATATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
* *
84066150 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---AG--TAAG
84066215 ACCATGGTTGAAAGATACCATGGCAACATGATA-GAAAATGAGTAAGACCATAGTTGAAAGACAC
58 ACCATGGTTGAAAGATACCATGGCAACATGATATG-AAATGAGTAAGACCATAGTTGAAAGACAC
*
84066279 TATGGCA
122 CATGGCA
84066286 TCACGTCAAA
Statistics
Matches: 119, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
130 47 0.39
133 2 0.02
136 1 0.01
137 1 0.01
138 68 0.57
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
TGAAAGATACCATGGCAACATGATATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:84071056 original size:60 final size:60
Alignment explanation
Indices: 84070983--84071101 Score: 193
Period size: 60 Copynumber: 2.0 Consensus size: 60
84070973 ATACTAAACT
* * * * *
84070983 AAACACAACAATTTATAGCTTAATCCTAAATTACTAATAAATTGATTTTAAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
84071043 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
84071102 TAAAAAACAA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.34
Consensus pattern (60 bp):
AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:84071291 original size:3 final size:3
Alignment explanation
Indices: 84071283--84071321 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
84071273 TATTTATTGT
*
84071283 TTC TTC TTC TTC TTC TTC TTC TTC TTC TGC -TC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
84071322 CCTTTCTCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 1 0.03
3 32 0.97
ACGTcount: A:0.00, C:0.33, G:0.03, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:84071336 original size:9 final size:10
Alignment explanation
Indices: 84071284--84071347 Score: 64
Period size: 9 Copynumber: 6.5 Consensus size: 10
84071274 ATTTATTGTT
84071284 TCTTCTTCT-
1 TCTTCTTCTC
84071293 TCTTCTTCT-
1 TCTTCTTCTC
84071302 TCTTCTTCTGC
1 TCTTCTTCT-C
84071313 TCTTCTTCTC
1 TCTTCTTCTC
84071323 -CTT-TCTCTC
1 TCTTCT-TCTC
*
84071332 TTTTCTTTCTC
1 TCTTC-TTCTC
84071343 TCTTC
1 TCTTC
84071348 GAGTGGGTGG
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
8 1 0.02
9 25 0.53
10 3 0.06
11 17 0.36
12 1 0.02
ACGTcount: A:0.00, C:0.36, G:0.02, T:0.62
Consensus pattern (10 bp):
TCTTCTTCTC
Found at i:84071686 original size:26 final size:25
Alignment explanation
Indices: 84071616--84071690 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 25
84071606 TAATAAATTT
*
84071616 AAATATTTTTAATA-AAAATAAAAAAT
1 AAATA-TTTTAATATAAAA-AAAAAAA
* *
84071642 TAATATTTTAAAATTTAAAAAAACAAAA
1 AAATATTTT--AATATAAAAAAA-AAAA
84071670 AAATATTTTAATATAAAAAAA
1 AAATATTTTAATATAAAAAAA
84071691 GGAGTTGCGC
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
25 4 0.10
26 15 0.38
27 6 0.15
28 15 0.38
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.33
Consensus pattern (25 bp):
AAATATTTTAATATAAAAAAAAAAA
Found at i:84071689 original size:28 final size:26
Alignment explanation
Indices: 84071616--84071690 Score: 69
Period size: 28 Copynumber: 2.8 Consensus size: 26
84071606 TAATAAATTT
* * *
84071616 AAATATTTTTAATAAAAATAAAAAAT
1 AAATATTTTAAATAAAAAAAAAAAAA
* * *
84071642 TAATATTTTAAAATTTAAAAAAACAAAA
1 AAATATTTT-AAA-TAAAAAAAAAAAAA
84071670 AAATATTTTAATATAAAAAAA
1 AAATATTTTAA-ATAAAAAAA
84071691 GGAGTTGCGC
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
26 8 0.21
27 11 0.29
28 19 0.50
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.33
Consensus pattern (26 bp):
AAATATTTTAAATAAAAAAAAAAAAA
Found at i:84074505 original size:16 final size:16
Alignment explanation
Indices: 84074486--84074524 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
84074476 AGAGAGCAGG
* *
84074486 GGAAAGAAAGAAGGAA
1 GGAAAAAAAGAAGAAA
84074502 GGAAAAAAAGAAGAAA
1 GGAAAAAAAGAAGAAA
84074518 GGAAAAA
1 GGAAAAA
84074525 GGGAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
GGAAAAAAAGAAGAAA
Found at i:84076651 original size:46 final size:46
Alignment explanation
Indices: 84076599--84076828 Score: 379
Period size: 46 Copynumber: 5.0 Consensus size: 46
84076589 AGTGTGCTCT
84076599 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
84076645 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
84076691 CTGATATGCAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
84076737 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
84076783 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
84076829 ATGGCAGAAA
Statistics
Matches: 177, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 177 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:84076875 original size:50 final size:49
Alignment explanation
Indices: 84076614--84076881 Score: 283
Period size: 46 Copynumber: 5.7 Consensus size: 49
84076604 ATGAAATGTG
* * *
84076614 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG--TG-
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATGA
* * * *
84076660 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGCAATG--TG-
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATGA
* * *
84076706 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATG-A--A
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATGA
*
84076752 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAG-A--A
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATGA
*
84076798 TAAGACCATGGTTGAAAGATACCATGGCAACATGGCA-GAAAATGAATGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA-GAATGA
* * * *
84076847 GTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 -TAAGACCATGGTTGAAAGATACCATGGCAACATG
84076882 TCAAAGATAA
Statistics
Matches: 204, Mismatches: 11, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
45 5 0.02
46 167 0.82
47 1 0.00
49 1 0.00
50 30 0.15
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (49 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATGA
Found at i:84087279 original size:34 final size:32
Alignment explanation
Indices: 84087202--84087284 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 32
84087192 ATATTTGTCT
*
84087202 TTTGCATCAAGTTTATTATGATTAGTGTTTTC
1 TTTGCATCAAGTTTATTATGATTAATGTTTTC
* *
84087234 -AT--ATCAAGTTTATTATGATTAATTTTTATC
1 TTTGCATCAAGTTTATTATGATTAATGTTT-TC
84087264 TTTCGCATCAAGTTTATTATG
1 TTT-GCATCAAGTTTATTATG
84087285 TTTTTGAGAT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
29 23 0.55
30 2 0.05
31 2 0.05
34 15 0.36
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.52
Consensus pattern (32 bp):
TTTGCATCAAGTTTATTATGATTAATGTTTTC
Found at i:84089464 original size:28 final size:28
Alignment explanation
Indices: 84089360--84089464 Score: 111
Period size: 28 Copynumber: 3.7 Consensus size: 28
84089350 ATCCACCACT
**
84089360 GGTACATAGTACCTGGAACTGTAATCACC
1 GGTACATAGTACCTGGAACTG-AAAAACC
* * * *
84089389 GGCACAGAGTGCCTAGAACTGAAAAACC
1 GGTACATAGTACCTGGAACTGAAAAACC
* * * *
84089417 GGTACATAGTACTTGAAACTGAAAGACT
1 GGTACATAGTACCTGGAACTGAAAAACC
84089445 GGTACATAGTACCTGGAACT
1 GGTACATAGTACCTGGAACT
84089465 TTAATCACCA
Statistics
Matches: 60, Mismatches: 16, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
28 43 0.72
29 17 0.28
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (28 bp):
GGTACATAGTACCTGGAACTGAAAAACC
Found at i:84091714 original size:27 final size:27
Alignment explanation
Indices: 84091684--84091741 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
84091674 CTACCCCGTC
*
84091684 TTTACCATC-TCGGTAGACTA-CTCTGTG
1 TTTACCATCAT-GGCAGACTACCT-TGTG
*
84091711 TTTACTATCATGGCAGACTACCTTGTG
1 TTTACCATCATGGCAGACTACCTTGTG
84091738 TTTA
1 TTTA
84091742 TTATCCCAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 24 0.89
28 3 0.11
ACGTcount: A:0.21, C:0.22, G:0.17, T:0.40
Consensus pattern (27 bp):
TTTACCATCATGGCAGACTACCTTGTG
Found at i:84102549 original size:22 final size:22
Alignment explanation
Indices: 84102524--84102581 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
84102514 CATGAAGCAA
84102524 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
84102546 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
** *
84102568 TACCATACCTCCAC
1 CCCCATACCCCCAC
84102582 AGTCCTCGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.31, C:0.53, G:0.03, T:0.12
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:84103976 original size:16 final size:16
Alignment explanation
Indices: 84103955--84103985 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
84103945 GGTTATGTGT
84103955 TATATATATTAGTATA
1 TATATATATTAGTATA
84103971 TATATATATTAGTAT
1 TATATATATTAGTAT
84103986 TATCAGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
TATATATATTAGTATA
Found at i:84105725 original size:10 final size:11
Alignment explanation
Indices: 84105710--84105739 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
84105700 TAAACCAAGT
84105710 TTGTTTTTA-A
1 TTGTTTTTATA
84105720 TTGTTTTTATA
1 TTGTTTTTATA
84105731 TTGTTTTTA
1 TTGTTTTTA
84105740 CTTTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.73
Consensus pattern (11 bp):
TTGTTTTTATA
Found at i:84115487 original size:13 final size:13
Alignment explanation
Indices: 84115469--84115496 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
84115459 CAAGGCGTTT
84115469 AAACTGTACGACA
1 AAACTGTACGACA
84115482 AAACTGTACGACA
1 AAACTGTACGACA
84115495 AA
1 AA
84115497 TAGTGAGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.21, G:0.14, T:0.14
Consensus pattern (13 bp):
AAACTGTACGACA
Found at i:84116347 original size:79 final size:78
Alignment explanation
Indices: 84116231--84116375 Score: 211
Period size: 79 Copynumber: 1.8 Consensus size: 78
84116221 TATGTTTTTC
* *
84116231 AAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATAATGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
84116296 TATGCTTTTCAAA
66 TATGCTTTTCAAA
** * *
84116309 AAAAAAAGTCAACTCAT-ATGGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA
1 AAAAAAA-TCAACTCATAAT-GCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
84116373 TTT
64 TTT
84116376 TTGTGTTTTA
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
78 9 0.15
79 50 0.85
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (78 bp):
AAAAAAATCAACTCATAATGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
TATGCTTTTCAAA
Found at i:84116881 original size:72 final size:71
Alignment explanation
Indices: 84116743--84116881 Score: 181
Period size: 72 Copynumber: 1.9 Consensus size: 71
84116733 TTTTTCAAAA
* * ** *
84116743 TCAACTCATATCGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
1 TCAACTCATATCGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAA-TAATCTGT
84116808 TTTAATT
65 TTTAATT
* *
84116815 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAA-AATCTG
1 TCAACTCATATCGCGAGAGGTGAGTTGAGCCTCGGGGCAC--GCCGAGGTATTTTCAATAATCTG
84116879 TTT
64 TTT
84116882 GGCAAATTCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
72 43 0.74
74 15 0.26
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (71 bp):
TCAACTCATATCGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAATAATCTGTT
TTAATT
Found at i:84116969 original size:88 final size:88
Alignment explanation
Indices: 84116815--84117017 Score: 230
Period size: 88 Copynumber: 2.3 Consensus size: 88
84116805 TGTTTTAATT
* *
84116815 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAAATCTGT
1 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATGCCGAGATATTTTCAAAATCTGT
84116880 TTGGCAAAT-TCTATTTTCAAA-AA
66 TT--CAAATGTCTATTTTCAAAGAA
** * * *** *
84116903 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTGTTCACATGCTGAGATATTTTCAGTTTTTGT
1 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATGCCGAGATATTTTCAAAATCTGT
** * *
84116968 TTTTAATGTCTATTTTTAAAGAG
66 TTCAAATGTCTATTTTCAAAGAA
* *
84116991 TCAATTCATATTGCGAGAAATGAGTTG
1 TCAACTCATATTGCGAGAAGTGAGTTG
84117018 GGCTCAAGAT
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
86 3 0.03
87 11 0.11
88 83 0.86
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.37
Consensus pattern (88 bp):
TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATGCCGAGATATTTTCAAAATCTGT
TTCAAATGTCTATTTTCAAAGAA
Found at i:84117733 original size:22 final size:22
Alignment explanation
Indices: 84117708--84117765 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
84117698 CATGAAGCAA
84117708 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
84117730 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
* *
84117752 TCCCATACCTCCAC
1 CCCCATACCCCCAC
84117766 AGTCCTCGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.29, C:0.55, G:0.03, T:0.12
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:84119238 original size:14 final size:14
Alignment explanation
Indices: 84119219--84119247 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
84119209 GGTTATGTGT
84119219 TATATATATTAGTA
1 TATATATATTAGTA
84119233 TATATATATTAGTA
1 TATATATATTAGTA
84119247 T
1 T
84119248 TATCAGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TATATATATTAGTA
Found at i:84123311 original size:13 final size:13
Alignment explanation
Indices: 84123289--84123319 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
84123279 TTTGGGGCTG
*
84123289 TTTTTGTTTTGGA
1 TTTTTATTTTGGA
84123302 TTTTTATTTTGGA
1 TTTTTATTTTGGA
84123315 TTTTT
1 TTTTT
84123320 GGCATGACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.00, G:0.16, T:0.74
Consensus pattern (13 bp):
TTTTTATTTTGGA
Found at i:84126237 original size:16 final size:18
Alignment explanation
Indices: 84126210--84126242 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
84126200 TGGAATTGGG
84126210 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
84126227 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
84126243 TATAAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:84128343 original size:19 final size:21
Alignment explanation
Indices: 84128303--84128343 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
84128293 CACCCCTTGT
*
84128303 GTTGCAACACTGCAGGCCTGC
1 GTTGCAACACTGCAGCCCTGC
84128324 GTTGCAACACTG-A-CCCTGC
1 GTTGCAACACTGCAGCCCTGC
84128343 G
1 G
84128344 CAGCCCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 1 0.05
21 12 0.63
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.20
Consensus pattern (21 bp):
GTTGCAACACTGCAGCCCTGC
Found at i:84135746 original size:45 final size:45
Alignment explanation
Indices: 84135695--84135781 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
84135685 TATGTAATCT
* *
84135695 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTAGTCTGAGTTCATGATATATGCGACATCC
*
84135740 GAACTCATTGAGTTGTAGTCTGAGTTCGTGATATATGCGACA
1 GAACTCATTGAGTTGTAGTCTGAGTTCATGATATATGCGACA
84135782 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.34
Consensus pattern (45 bp):
GAACTCATTGAGTTGTAGTCTGAGTTCATGATATATGCGACATCC
Found at i:84141005 original size:41 final size:42
Alignment explanation
Indices: 84140944--84141023 Score: 119
Period size: 41 Copynumber: 1.9 Consensus size: 42
84140934 GTGATAAAAT
* *
84140944 GTGTAAGACCATTTCTGGGACATTGGCATCG-TATATGACTC
1 GTGTAAGACCATTTCCGGGACAGTGGCATCGATATATGACTC
84140985 GTGTAAGACC-TTATCCGGGACAGTGGCATCGATATATGA
1 GTGTAAGACCATT-TCCGGGACAGTGGCATCGATATATGA
84141024 TAACATGTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
40 2 0.06
41 26 0.74
42 7 0.20
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATTTCCGGGACAGTGGCATCGATATATGACTC
Found at i:84158487 original size:16 final size:16
Alignment explanation
Indices: 84158466--84158502 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
84158456 ATAATTATTC
84158466 AATCATGATTACAATT
1 AATCATGATTACAATT
84158482 AATCATGATTACAATT
1 AATCATGATTACAATT
84158498 AATCA
1 AATCA
84158503 ATCTTATTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.35
Consensus pattern (16 bp):
AATCATGATTACAATT
Found at i:84160804 original size:9 final size:9
Alignment explanation
Indices: 84160790--84160839 Score: 82
Period size: 9 Copynumber: 5.6 Consensus size: 9
84160780 ATAAATATAA
84160790 AATTAACCG
1 AATTAACCG
84160799 AATTAACCG
1 AATTAACCG
*
84160808 AATTAATCG
1 AATTAACCG
84160817 AATTAACCG
1 AATTAACCG
*
84160826 AATTAACCA
1 AATTAACCG
84160835 AATTA
1 AATTA
84160840 TTTGTATAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.48, C:0.18, G:0.08, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:84160870 original size:6 final size:6
Alignment explanation
Indices: 84160859--84160923 Score: 103
Period size: 6 Copynumber: 10.5 Consensus size: 6
84160849 AATTATATGT
*
84160859 TTTTTA TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTTTTA
84160909 TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTT
84160924 ATTAAATTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
6 46 0.84
7 8 0.15
8 1 0.02
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:84160896 original size:32 final size:32
Alignment explanation
Indices: 84160859--84160920 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
84160849 AATTATATGT
84160859 TTTTTATTTTTATTTTTATTTTTAGTTTTAGA
1 TTTTTATTTTTATTTTTATTTTTAGTTTTAGA
*
84160891 TTTTTATTTTTATTTTTATTTTTATTTTTA
1 TTTTTATTTTTATTTTTATTTTTAGTTTTA
84160921 TTTATTAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (32 bp):
TTTTTATTTTTATTTTTATTTTTAGTTTTAGA
Found at i:84160933 original size:18 final size:18
Alignment explanation
Indices: 84160859--84160946 Score: 61
Period size: 18 Copynumber: 4.7 Consensus size: 18
84160849 AATTATATGT
**
84160859 TTTTTATTTTTATTTTTA
1 TTTTTATTTTTATAATTA
* **
84160877 TTTTTAGTTTTAGATTTTTA
1 TTTTTA-TTTT-TATAATTA
**
84160897 TTTTTATTTTTATTTTTA
1 TTTTTATTTTTATAATTA
84160915 TTTTTATTTATTA-AATTA
1 TTTTTATTT-TTATAATTA
*
84160933 TTTGTAATTTTTAT
1 TTT-TTATTTTTAT
84160947 GATTGGGTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
18 31 0.52
19 16 0.27
20 13 0.22
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTTTATTTTTATAATTA
Found at i:84160982 original size:18 final size:19
Alignment explanation
Indices: 84160949--84160986 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
84160939 ATTTTTATGA
84160949 TTGGGTTTGAGTAATTGGG
1 TTGGGTTTGAGTAATTGGG
*
84160968 TTGGG-TTGGGTAATTGGG
1 TTGGGTTTGAGTAATTGGG
84160986 T
1 T
84160987 CAATATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.13, C:0.00, G:0.45, T:0.42
Consensus pattern (19 bp):
TTGGGTTTGAGTAATTGGG
Found at i:84163460 original size:47 final size:47
Alignment explanation
Indices: 84163394--84163487 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
84163384 CCTATTTTAC
84163394 ACAATGGGCTATCTGTAAATGAATATTTTGAGAATTTAGTAATGTTT
1 ACAATGGGCTATCTGTAAATGAATATTTTGAGAATTTAGTAATGTTT
84163441 ACAATGGGCTATCTGTAAATGAATATTTTGAGAATTTAGTAATGTTT
1 ACAATGGGCTATCTGTAAATGAATATTTTGAGAATTTAGTAATGTTT
84163488 TCTTCATGTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.34, C:0.06, G:0.19, T:0.40
Consensus pattern (47 bp):
ACAATGGGCTATCTGTAAATGAATATTTTGAGAATTTAGTAATGTTT
Found at i:84166700 original size:227 final size:229
Alignment explanation
Indices: 84166409--84166866 Score: 785
Period size: 231 Copynumber: 2.0 Consensus size: 229
84166399 GTTTTAGTAA
* * **
84166409 TATACTAAACAATGTTGATAATTTAAATTCAGTGCTTATATATTTAGTATCTAGTTTTCAGCA-T
1 TATACTAAACAATGTTGATAATTCAAATTCAGTGCTTATATATGTAGTAGATAGTTTTCAGCATT
84166473 -TTTTTAAGATTATAAAACAACACATAAGTTAAAGATAGTCATGGTAATCCAAAATAAAATAAAG
66 ATTTTTAAGATTATAAAACAACACATAAGTTAAAGATAGTCATGGTAATCCAAAATAAAATAAAG
*
84166537 AAAATAGCCCCCAAAAGCATAAACCCCTTTTAACAAAAATATGGTATATGGTGAAGTGTCATGTT
131 AAAATAGCCCCCAAAAGCATAAACCCCTTTTAACAAAAATATGGTATATGGTGAAGTGTCATGCT
*
84166602 GTGTATTTTCGATGCTATCACATTGGCTCAACCC
196 GTGTACTTTCGATGCTATCACATTGGCTCAACCC
* *
84166636 TATACTAAACAATGTTGATAATTCAAATTCAGTGCTTATCTCTGTAGTAGATAGTTTTCAGCATT
1 TATACTAAACAATGTTGATAATTCAAATTCAGTGCTTATATATGTAGTAGATAGTTTTCAGCA-T
*
84166701 TAATTTTTAAGATTATAGAACAACACATAAGTTAAAGATAGTCATGGTAATCCAAAATAAAATAA
65 T-ATTTTTAAGATTATAAAACAACACATAAGTTAAAGATAGTCATGGTAATCCAAAATAAAATAA
*
84166766 AGAAAATAGCCCCCAAAATCATAAACCCCTTTTAACAAAAATATGGTATATGGTGAAGTGTCATG
129 AGAAAATAGCCCCCAAAAGCATAAACCCCTTTTAACAAAAATATGGTATATGGTGAAGTGTCATG
*
84166831 CTGTGTACTTTCGGTGCTATCACATTGGCTCAACCC
194 CTGTGTACTTTCGATGCTATCACATTGGCTCAACCC
84166867 CTACCCCCTG
Statistics
Matches: 216, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
227 57 0.26
229 1 0.00
231 158 0.73
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (229 bp):
TATACTAAACAATGTTGATAATTCAAATTCAGTGCTTATATATGTAGTAGATAGTTTTCAGCATT
ATTTTTAAGATTATAAAACAACACATAAGTTAAAGATAGTCATGGTAATCCAAAATAAAATAAAG
AAAATAGCCCCCAAAAGCATAAACCCCTTTTAACAAAAATATGGTATATGGTGAAGTGTCATGCT
GTGTACTTTCGATGCTATCACATTGGCTCAACCC
Found at i:84183581 original size:26 final size:26
Alignment explanation
Indices: 84183552--84183602 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
84183542 TAATTTTTTT
* *
84183552 TTGAAAATTTTACCTTTGGTAAAATG
1 TTGAAAATTTTACCCTTAGTAAAATG
**
84183578 TTGACCATTTTACCCTTAGTAAAAT
1 TTGAAAATTTTACCCTTAGTAAAAT
84183603 TTCGAGAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (26 bp):
TTGAAAATTTTACCCTTAGTAAAATG
Found at i:84192026 original size:28 final size:29
Alignment explanation
Indices: 84191975--84192029 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
84191965 ACAGGGGTTT
*
84191975 TCACACGGCCTAAAACACGTCCGTGTCCC
1 TCACACGGCCTAAAACACGCCCGTGTCCC
**
84192004 TCACACGG-CTATGACACGCCCGTGTC
1 TCACACGGCCTAAAACACGCCCGTGTC
84192030 TATGTCCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.22, C:0.40, G:0.20, T:0.18
Consensus pattern (29 bp):
TCACACGGCCTAAAACACGCCCGTGTCCC
Found at i:84192037 original size:40 final size:40
Alignment explanation
Indices: 84191993--84192104 Score: 170
Period size: 40 Copynumber: 2.8 Consensus size: 40
84191983 CCTAAAACAC
84191993 GTCCGTGTCCCTCACACGGCTATGACACGCCCGTGTCTAT
1 GTCCGTGTCCCTCACACGGCTATGACACGCCCGTGTCTAT
* * *
84192033 GTCCGTGTTCCTCACACGACCATGACACGCCCGTGTCTAT
1 GTCCGTGTCCCTCACACGGCTATGACACGCCCGTGTCTAT
* *
84192073 GTCCCATGTCCCTCACATGGCTATGACACGCC
1 GT-CCGTGTCCCTCACACGGCTATGACACGCC
84192105 TTTGTCCAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 39 0.62
41 24 0.38
ACGTcount: A:0.17, C:0.38, G:0.21, T:0.24
Consensus pattern (40 bp):
GTCCGTGTCCCTCACACGGCTATGACACGCCCGTGTCTAT
Found at i:84202231 original size:23 final size:22
Alignment explanation
Indices: 84202205--84202250 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
84202195 TGTGATGACG
84202205 TTATCTT-ATAAATATGTATGAAT
1 TTATCTTGA-AAATATGT-TGAAT
84202228 TTATCTTGAAAATATGTTGAAT
1 TTATCTTGAAAATATGTTGAAT
84202250 T
1 T
84202251 GATTTGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 15 0.68
24 1 0.05
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.48
Consensus pattern (22 bp):
TTATCTTGAAAATATGTTGAAT
Found at i:84208687 original size:28 final size:28
Alignment explanation
Indices: 84208654--84208836 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
84208644 ATATTAAGTC
*
84208654 CGCACACTCAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
84208682 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
84208710 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
84208738 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
84208766 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
84208794 CGCACACTTGGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
84208823 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84208837 CAATCTCATG
Statistics
Matches: 143, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 125 0.87
29 18 0.13
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84215373 original size:6 final size:6
Alignment explanation
Indices: 84215359--84215397 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
84215349 GGATTGTAAG
* * *
84215359 TTTCCA TTTCTA TTTCTA TTTCTA TTTCCA TTTCCA TTT
1 TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTT
84215398 TTGGAAGCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (6 bp):
TTTCCA
Found at i:84215379 original size:12 final size:12
Alignment explanation
Indices: 84215359--84215397 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
84215349 GGATTGTAAG
84215359 TTTCCATTTCTA
1 TTTCCATTTCTA
*
84215371 TTTCTATTTCTA
1 TTTCCATTTCTA
*
84215383 TTTCCATTTCCA
1 TTTCCATTTCTA
84215395 TTT
1 TTT
84215398 TTGGAAGCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTCCATTTCTA
Found at i:84221950 original size:44 final size:44
Alignment explanation
Indices: 84221900--84221987 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
84221890 TAAACTCATA
84221900 CCTTAATTAAGCTCCAAATTGGCTGAACCCTAGCTTTGTGTTCT
1 CCTTAATTAAGCTCCAAATTGGCTGAACCCTAGCTTTGTGTTCT
84221944 CCTTAATTAAGCTCCAAATTGGCTGAACCCTAGCTTTGTGTTCT
1 CCTTAATTAAGCTCCAAATTGGCTGAACCCTAGCTTTGTGTTCT
84221988 TTCTTTTTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (44 bp):
CCTTAATTAAGCTCCAAATTGGCTGAACCCTAGCTTTGTGTTCT
Found at i:84229850 original size:37 final size:37
Alignment explanation
Indices: 84229791--84229899 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
84229781 AGCTCAGACG
* *
84229791 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
84229828 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
84229865 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
84229900 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:84230104 original size:50 final size:50
Alignment explanation
Indices: 84230050--84230146 Score: 142
Period size: 50 Copynumber: 1.9 Consensus size: 50
84230040 ATCGCCTACG
*
84230050 TATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGACTTTACCACATATACATATCTCATATATA
* * *
84230100 TATTTCACATTGACCATTCGACTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGACTTTACCACATATACATATCTCATAT
84230147 TCATCACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 2 0.05
50 40 0.95
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.37
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGACTTTACCACATATACATATCTCATATATA
Found at i:84230203 original size:47 final size:47
Alignment explanation
Indices: 84230104--84230296 Score: 246
Period size: 47 Copynumber: 4.1 Consensus size: 47
84230094 TATATATATT
* * * * * *
84230104 TCACATTGACCATTCGACTTTA-C-CACGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACATTCA
84230150 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
84230197 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * * **
84230244 TCACATTGGCCATTCGGCCTTATCTCATATATACATATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
84230291 TCACAT
1 TCACAT
84230297 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
46 19 0.14
47 105 0.78
48 10 0.07
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:84230224 original size:22 final size:22
Alignment explanation
Indices: 84230149--84230267 Score: 59
Period size: 23 Copynumber: 5.1 Consensus size: 22
84230139 TCTCATATTC
84230149 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
84230171 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
84230195 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
84230218 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
84230242 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
84230265 ATC
1 ATC
84230268 TCATATATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 18 0.25
23 19 0.27
24 19 0.27
25 15 0.21
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:84233741 original size:56 final size:56
Alignment explanation
Indices: 84233655--84233774 Score: 213
Period size: 56 Copynumber: 2.1 Consensus size: 56
84233645 ACAAGGGATG
* *
84233655 ATGGGCAAAACATGTTATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATAGAAAAATAAAATAAGAAGC
*
84233711 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATAGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATAGAAAAATAAAATAAGAAGC
84233767 ATGGGCAA
1 ATGGGCAA
84233775 TAAACTAATA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.46, C:0.08, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATAGAAAAATAAAATAAGAAGC
Found at i:84235245 original size:47 final size:47
Alignment explanation
Indices: 84235153--84235805 Score: 949
Period size: 47 Copynumber: 13.8 Consensus size: 47
84235143 TATTCATTGG
*
84235153 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 AATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCC
* *
84235202 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
* *
84235249 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
* *
84235296 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 AATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCC
*
84235345 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
84235392 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCC
* *
84235441 AATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCC
* *
84235488 AATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCC
* *
84235535 AATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCC
* *
84235582 AATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCC
* *
84235629 AATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCC
* *
84235676 AATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCC
84235723 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
* * *
84235770 AATGTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAG
84235806 TCCCGAAGGG
Statistics
Matches: 576, Mismatches: 22, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 462 0.80
49 112 0.19
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
Found at i:84235683 original size:22 final size:22
Alignment explanation
Indices: 84235656--84235777 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
84235646 CATGTGTATG
84235656 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
84235678 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
84235703 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
84235725 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
84235750 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
84235772 TGTGAT
1 TGTGAT
84235778 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:84237716 original size:40 final size:40
Alignment explanation
Indices: 84237682--84237957 Score: 372
Period size: 40 Copynumber: 6.8 Consensus size: 40
84237672 CCAGCATGAT
* * *
84237682 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
84237722 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
84237762 TGCTCTTCGGAACTTAGCCCGGATACATTACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*** *
84237802 TGCTCTTCGGGACTTAGTTTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
84237842 TGCTCTTCGGGACTTAGCCCGGATATATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGG----ATATATCACTAGCACGAA
* *
84237886 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
84237926 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
84237958 CTCAATTCTC
Statistics
Matches: 205, Mismatches: 27, Indels: 8
0.85 0.11 0.03
Matches are distributed among these distances:
40 167 0.81
44 38 0.19
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:84239288 original size:37 final size:37
Alignment explanation
Indices: 84239226--84239371 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
84239216 AGCTCAGACG
* * *
84239226 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGACA
*
84239263 AAATCTCCACACGTAGTCATTGGGTCTCACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGACA
84239300 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGACA
*
84239337 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGA
84239372 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.21
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTCACCCGGACA
Found at i:84239580 original size:50 final size:50
Alignment explanation
Indices: 84239522--84239618 Score: 124
Period size: 50 Copynumber: 1.9 Consensus size: 50
84239512 ATCGCTTACG
*
84239522 TATTTCACACTAG-CCATTCGGCTTTACCACAAATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGACTTTACCACAAATACATATCTCATATATA
* * ** *
84239572 TATTTCACATTGACGATTCGACTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGACTTTACCACAAATACATATCTCATAT
84239619 TCATCACATT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
49 2 0.05
50 38 0.95
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGACTTTACCACAAATACATATCTCATATATA
Found at i:84239675 original size:47 final size:47
Alignment explanation
Indices: 84239603--84239768 Score: 251
Period size: 47 Copynumber: 3.5 Consensus size: 47
84239593 CTTTACCACG
* * *
84239603 TATGCATATCTCATATTCATCACATTGGCCATTCGGCCTTATCACACA
1 TATGCAT-GCTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
84239651 TATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 TATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
* *
84239698 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATA
1 TATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
* **
84239745 TATACATATTCACATTCATCACAT
1 TATGCATGCTCACATTCATCACAT
84239769 AAAATCCTAA
Statistics
Matches: 111, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
47 104 0.94
48 7 0.06
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.34
Consensus pattern (47 bp):
TATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
Found at i:84239696 original size:22 final size:22
Alignment explanation
Indices: 84239621--84239739 Score: 59
Period size: 23 Copynumber: 5.1 Consensus size: 22
84239611 TCTCATATTC
84239621 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
84239643 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
84239667 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
84239690 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
84239714 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
84239737 ATC
1 ATC
84239740 TCATATATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 18 0.25
23 19 0.27
24 19 0.27
25 15 0.21
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:84242855 original size:47 final size:48
Alignment explanation
Indices: 84242786--84243010 Score: 184
Period size: 47 Copynumber: 4.8 Consensus size: 48
84242776 TAAGGTATCA
* *
84242786 ATGCCATGTCCTAGACATGGTCTTACAATGGCTCAT-ATCTCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCG
* *
84242833 ATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAG-CTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGTC-G
* * * * * * * *
84242881 ATG-CATGTCCCCGGCAT-CTCTTACACTGGCTTA-CGTCTTGAGGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATC-TCAAGTCG
* * *
84242927 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA-GTCG
*
84242973 ATGCCATGTCCCA-AGCATGGTCTTACACTAGCTC-TCAT
1 ATGCCATGTCCCAGA-CATGGTCTTACACTGGCTCATCAT
84243011 AAGGTTTCTG
Statistics
Matches: 144, Mismatches: 23, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
45 2 0.01
46 56 0.39
47 62 0.43
48 24 0.17
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCG
Found at i:84242964 original size:46 final size:46
Alignment explanation
Indices: 84242790--84243052 Score: 175
Period size: 46 Copynumber: 5.6 Consensus size: 46
84242780 GTATCAATGC
* * * * *
84242790 CATGTCCTAGACATGGTCTTACAATGGCTCAT-ATCTCAAGTC-GATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAAGGCTGATG
* * *
84242836 CCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTA-GCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAG-CTCTCGTCTC-AAGGCTGATG
* * * * ** *
84242884 CATGTCCCCGGCATCTCTTACACTGGCT-TACGTCTTGAGGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAAGGCTGATG
* *
84242930 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAGGCTGATG
*
84242976 CCATGTCCCA-AGCATGGTCTTACACTAGCTCTC--AT-AAGGTTTCTGATG
1 -CATGTCCCAGA-CAT-GTCTTACACTAGCTCTCGTCTCAAGG---CTGATG
*
84243024 CATGTCCTAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
84243053 ACACACAAAT
Statistics
Matches: 176, Mismatches: 25, Indels: 31
0.76 0.11 0.13
Matches are distributed among these distances:
45 5 0.03
46 75 0.43
47 68 0.39
48 28 0.16
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAGGCTGATG
Found at i:84243043 original size:140 final size:140
Alignment explanation
Indices: 84242790--84243047 Score: 317
Period size: 140 Copynumber: 1.8 Consensus size: 140
84242780 GTATCAATGC
* * *
84242790 CATGTCCTAGACATGGTCTTACAATGGCTCATATCTCAAGTCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGGTCTTACAATAGCTCATATCTCAAGCCGATGCCATGTCCCAGACATGGTC
** * *
84242855 TTACACTGACTATCATCTCGTAGCTGATGCATGTCCCCGGCATCTCTTACACTGGCTTACGTCTT
66 TTACACTGACTATCATAACGTAGCTGATGCATGTCCCAGACATCTCTTACACTGGCTTACGTCTT
84242920 GAGGTTGATG
131 GAGGTTGATG
* *
84242930 CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGCCGATGCCATGTCCCA-AGCATG
1 CATGTCCCAGACATGGTCTTACAATAGCTCAT-ATCTCAA-GCCGATGCCATGTCCCAGA-CATG
* * ** * *
84242992 GTCTTACACT-AGCTCTCATAAGGTTTCTGATGCATGTCCTAGACATGTCTTACACT
63 GTCTTACACTGA-CTATCATAACGTAGCTGATGCATGTCCCAGACATCTCTTACACT
84243048 AGCTCACACA
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
138 1 0.01
139 21 0.21
140 77 0.78
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACAATAGCTCATATCTCAAGCCGATGCCATGTCCCAGACATGGTC
TTACACTGACTATCATAACGTAGCTGATGCATGTCCCAGACATCTCTTACACTGGCTTACGTCTT
GAGGTTGATG
Found at i:84248007 original size:27 final size:27
Alignment explanation
Indices: 84247967--84248024 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
84247957 ACTCTCTAAT
** *
84247967 TGATAAAATGACTGTTATGCCCCTGTG
1 TGATAAAACAACTGTTATGCCCCTATG
84247994 TGATAAAACAACTGTTATGCCCCTATG
1 TGATAAAACAACTGTTATGCCCCTATG
84248021 TGAT
1 TGAT
84248025 GTATGATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (27 bp):
TGATAAAACAACTGTTATGCCCCTATG
Found at i:84249037 original size:29 final size:29
Alignment explanation
Indices: 84249004--84249068 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
84248994 AAGGCGTATT
84249004 TAACAGAA-CCAGCCACAAAGGCTCTCATA
1 TAACA-AATCCAGCCACAAAGGCTCTCATA
** *
84249033 TAACAAATTTAGCCACAAGGGCTCTCATA
1 TAACAAATCCAGCCACAAAGGCTCTCATA
*
84249062 TGACAAA
1 TAACAAA
84249069 ATTATCCAGC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 2 0.06
29 29 0.94
ACGTcount: A:0.42, C:0.26, G:0.14, T:0.18
Consensus pattern (29 bp):
TAACAAATCCAGCCACAAAGGCTCTCATA
Found at i:84249082 original size:30 final size:29
Alignment explanation
Indices: 84249014--84249082 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
84249004 TAACAGAACC
* *
84249014 AGCCACAAAGGCTCTCATATAACAAATTT
1 AGCCACAAGGGCTCTCATATAACAAAATT
*
84249043 AGCCACAAGGGCTCTCATATGACAAAATT
1 AGCCACAAGGGCTCTCATATAACAAAATT
*
84249072 ATCCAGCAAGG
1 AGCCA-CAAGG
84249083 CATCCACTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
29 30 0.86
30 5 0.14
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (29 bp):
AGCCACAAGGGCTCTCATATAACAAAATT
Found at i:84266954 original size:30 final size:30
Alignment explanation
Indices: 84266918--84266977 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
84266908 ATTAGAATTT
*
84266918 CATCGATAAATACAAAAAAAAATCTGTCTA
1 CATCGATAAATACAAAAAAAAATCTATCTA
*
84266948 CATCGATAAATACAAAAACAAATCTATCTA
1 CATCGATAAATACAAAAAAAAATCTATCTA
84266978 AGTACGGTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.53, C:0.18, G:0.05, T:0.23
Consensus pattern (30 bp):
CATCGATAAATACAAAAAAAAATCTATCTA
Found at i:84278184 original size:40 final size:40
Alignment explanation
Indices: 84278147--84278331 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
84278137 GCTACTCGTT
*
84278147 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
84278187 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
84278227 CAAATGCCTTCGGG-CTTAGCCCAGAATTATTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
84278266 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
84278307 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84278332 CATCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 75 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:84278265 original size:79 final size:80
Alignment explanation
Indices: 84278147--84278329 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 80
84278137 GCTACTCGTT
* * *
84278147 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGATTATA-TAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
84278211 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* **
84278227 CAAATGCCTTCGGG-CTTAGCCCAGAATTAT-TATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCC-G-ATTATATAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
84278290 GATATGGTCACTTAGCA
64 GATATAGTAACTTAGCA
84278307 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
84278330 GACATCATTC
Statistics
Matches: 88, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
78 3 0.03
79 50 0.57
80 31 0.35
81 4 0.05
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGATTATATAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:84285660 original size:79 final size:82
Alignment explanation
Indices: 84285549--84285733 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
84285539 GCTACTCGTT
* * *
84285549 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
84285612 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
84285629 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
84285692 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
84285709 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84285734 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:84285733 original size:40 final size:40
Alignment explanation
Indices: 84285530--84285733 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
84285520 CGGAATTTAA
** *
84285530 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
84285570 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
84285610 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84285649 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
84285689 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
84285729 CCGGA
1 CCGGA
84285734 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84288441 original size:48 final size:48
Alignment explanation
Indices: 84288351--84288620 Score: 292
Period size: 48 Copynumber: 5.6 Consensus size: 48
84288341 CTCATAACAG
* * * * * * * *
84288351 TGCCGATGCCATGTCTCAGACATGGTCTTATACGAGACCTCATATCAA
1 TGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGA
* * *
84288399 TGCCAATGCCA-AGTCCCAGATATGGTCTTACATGGGATCTCATGTGGA
1 TGCCAATGCCATA-TCCCAGATATGGTCTTACACGGGATCTCATATCGA
* * *
84288447 TGCTAATGCCATATCCCCA-ATATGGTCTTACATGGGATTTCATATCGA
1 TGCCAATGCCATAT-CCCAGATATGGTCTTACACGGGATCTCATATCGA
* *
84288495 TGCCGATGCCATATCCCAGATATGGTCTTACACGGGATCTCATCTCGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGA
* * * *
84288543 TGCCAATGCTATATCCCAGATACGGTCTTACAAGGGATCTCATATTGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGA
** * *
84288591 TGCTGATTCCATATCTCAGATATGGTCTTA
1 TGCCAATGCCATATCCCAGATATGGTCTTA
84288621 TACAGGATTT
Statistics
Matches: 186, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
47 4 0.02
48 177 0.95
49 5 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (48 bp):
TGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGA
Found at i:84288537 original size:144 final size:144
Alignment explanation
Indices: 84288351--84288620 Score: 364
Period size: 144 Copynumber: 1.9 Consensus size: 144
84288341 CTCATAACAG
* * *
84288351 TGCCGATGCCATGTCTCAGACATGGTCTTATACGAGACCTCATATCAATGCCAATGCCA-AGTCC
1 TGCCGATGCCATATCCCAGACATGGTCTTACACGAGACCTCATATCAATGCCAATGCCATA-TCC
* * *
84288415 CAGATATGGTCTTACATGGGATCTCATGTGGATGCTAATGCCATATCCCCA-ATATGGTCTTACA
65 CAGATACGGTCTTACAAGGGATCTCATATGGATGCTAATGCCATAT-CCCAGATATGGTCTTACA
84288479 TGGGATTTCATATCGA
129 TGGGATTTCATATCGA
* * * * * *
84288495 TGCCGATGCCATATCCCAGATATGGTCTTACACGGGATCTCATCTCGATGCCAATGCTATATCCC
1 TGCCGATGCCATATCCCAGACATGGTCTTACACGAGACCTCATATCAATGCCAATGCCATATCCC
* * * *
84288560 AGATACGGTCTTACAAGGGATCTCATATTGATGCTGATTCCATATCTCAGATATGGTCTTA
66 AGATACGGTCTTACAAGGGATCTCATATGGATGCTAATGCCATATCCCAGATATGGTCTTA
84288621 TACAGGATTT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
143 3 0.03
144 104 0.96
145 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (144 bp):
TGCCGATGCCATATCCCAGACATGGTCTTACACGAGACCTCATATCAATGCCAATGCCATATCCC
AGATACGGTCTTACAAGGGATCTCATATGGATGCTAATGCCATATCCCAGATATGGTCTTACATG
GGATTTCATATCGA
Found at i:84293304 original size:53 final size:53
Alignment explanation
Indices: 84293241--84293345 Score: 129
Period size: 53 Copynumber: 2.0 Consensus size: 53
84293231 TTCCTTTTTA
* ** * *
84293241 AACTTACCATTTCCATTTCTTAACATGGTCTTACGTGGTATCCTTACCTTATG
1 AACTCACCATTTCCATGCCTTAACATGGTCTTACATGGGATCCTTACCTTATG
** * *
84293294 AACTCACCATTTCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTTCCATGCCTTAACATGGTCTTACATGGGATCCTTACCTTAT
84293346 AGTAGTTTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (53 bp):
AACTCACCATTTCCATGCCTTAACATGGTCTTACATGGGATCCTTACCTTATG
Found at i:84310764 original size:5 final size:5
Alignment explanation
Indices: 84310754--84310782 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
84310744 GCTCGTGATT
84310754 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
84310783 TACAGCACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:84332186 original size:30 final size:30
Alignment explanation
Indices: 84332112--84332186 Score: 114
Period size: 30 Copynumber: 2.5 Consensus size: 30
84332102 ACGACCATCC
* *
84332112 CACACGGGCGCGTGGCCTGCCCGTGTGTCT
1 CACACGGGCGTGTGGCCTACCCGTGTGTCT
*
84332142 CACACGGGCGTGTGGCCTACCGGTGTGTCT
1 CACACGGGCGTGTGGCCTACCCGTGTGTCT
*
84332172 CACACGGGCATGTGG
1 CACACGGGCGTGTGG
84332187 TTTACTCGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.11, C:0.32, G:0.37, T:0.20
Consensus pattern (30 bp):
CACACGGGCGTGTGGCCTACCCGTGTGTCT
Found at i:84335330 original size:8 final size:8
Alignment explanation
Indices: 84335288--84335312 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
84335278 ATATAGACTA
84335288 AATAAAAT
1 AATAAAAT
84335296 AATAAAAT
1 AATAAAAT
84335304 AATAAAAT
1 AATAAAAT
84335312 A
1 A
84335313 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:84335336 original size:29 final size:30
Alignment explanation
Indices: 84335285--84335352 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
84335275 TATATATAGA
*
84335285 CTAAATAAAATAATAAAATAATAA-AATAT
1 CTAATTAAAATAATAAAATAATAATAATAT
* *
84335314 CTTATTAAAAT-ATTAAATAAATAATAATAT
1 CTAATTAAAATAATAAAAT-AATAATAATAT
84335344 CTAATTAAA
1 CTAATTAAA
84335353 TAACTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 6 0.18
29 14 0.42
30 13 0.39
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (30 bp):
CTAATTAAAATAATAAAATAATAATAATAT
Found at i:84335354 original size:18 final size:17
Alignment explanation
Indices: 84335322--84335355 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
84335312 ATCTTATTAA
84335322 AATATTAAATAAATAAT
1 AATATTAAATAAATAAT
*
84335339 AATATCTAATTAAATAA
1 AATAT-TAAATAAATAA
84335356 CTATAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (17 bp):
AATATTAAATAAATAAT
Found at i:84335364 original size:29 final size:30
Alignment explanation
Indices: 84335285--84335365 Score: 71
Period size: 29 Copynumber: 2.7 Consensus size: 30
84335275 TATATATAGA
*
84335285 CTAAATAAAATA--ATAAAATAATAAAATAT
1 CTAATTAAAATACTATAAAATAAT-AAATAT
* * *
84335314 CTTATTAAAATATTAAATAAATAAT-AATAT
1 CTAATTAAAATACTATA-AAATAATAAATAT
84335344 CTAATT-AAATAACTATAAAATA
1 CTAATTAAAAT-ACTATAAAATA
84335366 TCACCAACAT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
29 19 0.45
30 14 0.33
31 2 0.05
32 7 0.17
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (30 bp):
CTAATTAAAATACTATAAAATAATAAATAT
Found at i:84335620 original size:29 final size:30
Alignment explanation
Indices: 84335563--84335630 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
84335553 CACCCTTAAG
* * * *
84335563 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTC
*
84335593 ATATTTACACT-TTAATCCCTCAAATTTTG
1 ATATTTACACTATTAATCCCTCAAATTTTC
84335622 AGTATTTAC
1 A-TATTTAC
84335631 TCTTGGGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.46
Consensus pattern (30 bp):
ATATTTACACTATTAATCCCTCAAATTTTC
Found at i:84337897 original size:25 final size:25
Alignment explanation
Indices: 84337850--84337897 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
84337840 TTCCTTGGAC
* ** *
84337850 TTATACTTATTTCATTTATCTATCT
1 TTATAATTATTTCATGCAACTATCT
84337875 TTATAATTATTTCATGCAACTAT
1 TTATAATTATTTCATGCAACTAT
84337898 TTTGTACATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.02, T:0.54
Consensus pattern (25 bp):
TTATAATTATTTCATGCAACTATCT
Found at i:84338129 original size:46 final size:47
Alignment explanation
Indices: 84338061--84338286 Score: 264
Period size: 46 Copynumber: 4.9 Consensus size: 47
84338051 TTATCTTCGA
* * * * *
84338061 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-GGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
* * * **
84338107 CAGGCTT-CCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCCGT
1 CATG-TTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
*
84338154 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
* *
84338200 C-TCGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CAT-GTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
* *
84338246 TATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTT
84338287 GAATCGCGAT
Statistics
Matches: 158, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
45 1 0.01
46 117 0.74
47 40 0.25
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
Found at i:84338225 original size:93 final size:92
Alignment explanation
Indices: 84338061--84338286 Score: 276
Period size: 93 Copynumber: 2.4 Consensus size: 92
84338051 TTATCTTCGA
* * * * *
84338061 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCGGTCAGGCTTCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCGGTCACGCTTCCATGGTATCTT
** * *
84338126 TCAACCATGGTCTTATTCATTTCCCCGT
66 TCAACCATGGTCTTACACATTT-CACAT
* * *
84338154 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGTCTCG-TTGCCATGGTATC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTC-GGTCACGCTT-CCATGGTATC
*
84338217 TTTCAACCATGGTCTTACACATTTCATAT
64 TTTCAACCATGGTCTTACACATTTCACAT
* *
84338246 TATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTT
84338287 GAATCGCGAT
Statistics
Matches: 114, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
92 43 0.38
93 71 0.62
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (92 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCGGTCACGCTTCCATGGTATCTT
TCAACCATGGTCTTACACATTTCACAT
Done.