Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110302803
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1825971 characters in sequence are not A, C, G, or T
File 258 of 343
Found at i:85123133 original size:26 final size:26
Alignment explanation
Indices: 85123111--85123198 Score: 131
Period size: 26 Copynumber: 3.4 Consensus size: 26
85123101 TTTTCTCTTC
*
85123111 TTCTTCTTCTTCTTTTTCTTCTCCTA
1 TTCTTCTTCTTCTTCTTCTTCTCCTA
*
85123137 TTCTTCTTCTTCTTCTCCTTCTCCTA
1 TTCTTCTTCTTCTTCTTCTTCTCCTA
* * *
85123163 TTCTTTTTCTTCTTCTTCTTTTCCTC
1 TTCTTCTTCTTCTTCTTCTTCTCCTA
85123189 TTCTTCTTCT
1 TTCTTCTTCT
85123199 ACTGCCCAGT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (26 bp):
TTCTTCTTCTTCTTCTTCTTCTCCTA
Found at i:85123142 original size:20 final size:20
Alignment explanation
Indices: 85123106--85123198 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
85123096 TTTTTTTTTC
*
85123106 TCTTCTTCTTCTTCTTCT-T
1 TCTTCTTCTTCTTCTCCTAT
* * *
85123125 T-TTCTTCTCCTAT-TCTTCT
1 TCTTCTTCTTCT-TCTCCTAT
*
85123144 TCTTCTTCTCCTTCTCCTAT
1 TCTTCTTCTTCTTCTCCTAT
* * *
85123164 TCTTTTTCTTCTTCTTCTTT
1 TCTTCTTCTTCTTCTCCTAT
*
85123184 TCCTCTTCTTCTTCT
1 TCTTCTTCTTCTTCT
85123199 ACTGCCCAGT
Statistics
Matches: 59, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
18 11 0.19
19 5 0.08
20 43 0.73
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (20 bp):
TCTTCTTCTTCTTCTCCTAT
Found at i:85131073 original size:104 final size:104
Alignment explanation
Indices: 85130951--85131174 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
85130941 AATGGATATC
85130951 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
85131016 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
85131055 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
85131120 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
85131159 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
85131175 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:85131536 original size:29 final size:29
Alignment explanation
Indices: 85131503--85131566 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
85131493 TAATCCACCA
85131503 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
85131532 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
85131562 CCCAA
1 CCCAA
85131567 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:85131540 original size:30 final size:30
Alignment explanation
Indices: 85131510--85131566 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
85131500 CCACCCAACT
85131510 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
85131539 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
85131567 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:85136063 original size:14 final size:14
Alignment explanation
Indices: 85136044--85136074 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
85136034 TTTGGATTAC
85136044 TTTATTATTATTTA
1 TTTATTATTATTTA
85136058 TTTATTATTATTTA
1 TTTATTATTATTTA
85136072 TTT
1 TTT
85136075 GTTTCAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATTATTATTTA
Found at i:85148765 original size:176 final size:176
Alignment explanation
Indices: 85148471--85148912 Score: 744
Period size: 176 Copynumber: 2.5 Consensus size: 176
85148461 TAGCGACATC
* * *
85148471 GTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTACAGATCTTATC
1 GTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAGTTACAGATCTTATC
*
85148536 TCCATGTATCGGCTATGGAGCAAATCAGAAATGGCGAGTCTTATCTCCATGTATCAGCTATAGAG
66 TCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCAGCTATAGAG
*
85148601 CAGATTTTAGCCACTAACCTTATCTCTCTGAGTTTGCAGAGAGCAG
131 CAAATTTTAGCCACTAACCTTATCTCTCTGAGTTTGCAGAGAGCAG
*
85148647 GTTGAAGATACAGGTCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAGTTACAGATCTTATC
1 GTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAGTTACAGATCTTATC
* * *
85148712 TCCATGTATCGGTTATGGAGCAGATCA-AAGATGGCGAGTCTTATCTCCATGTATCGGCTATGGA
66 TCCATGTATCGGCTATGGAGCAGATCAGAA-ATGGCGAGTCTTATCTCCATGTATCAGCTATAGA
*
85148776 GCAAATTTTAGCCACTAACCTTATCTCTTTGAGTTTGCAGAGAGCAG
130 GCAAATTTTAGCCACTAACCTTATCTCTCTGAGTTTGCAGAGAGCAG
*
85148823 GTTGAAGATACAGGTCTTATCTTCTTGAAGTTGCAGGAAGCAGACT-AGAAGTTACAGATCTTAT
1 GTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGA-AAGTTACAGATCTTAT
*
85148887 CTCCATGTATCGGCTATGGAGTAGAT
65 CTCCATGTATCGGCTATGGAGCAGAT
85148913 TTTAGCCACC
Statistics
Matches: 250, Mismatches: 14, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
175 3 0.01
176 247 0.99
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (176 bp):
GTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAGTTACAGATCTTATC
TCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCAGCTATAGAG
CAAATTTTAGCCACTAACCTTATCTCTCTGAGTTTGCAGAGAGCAG
Found at i:85148893 original size:131 final size:132
Alignment explanation
Indices: 85148750--85149038 Score: 465
Period size: 132 Copynumber: 2.2 Consensus size: 132
85148740 AGATGGCGAG
* * *
85148750 TCTTATCTCCATGTATCGGCTATGGAGCAAATTTTAGCCACTAACCTTATCTCTTTGAGTTTGC-
1 TCTTATCTCCATGTATCGGCTATGGAGCAAATTTTAGCCACCAACCTTATCTCTTTGAGGTAGCA
*
85148814 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCTTGAAGTTGCAGGAAGCAGACTAG-AAGTTAC
66 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGA-TAGAAAGTTAC
85148878 AGA
130 AGA
* * *
85148881 TCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACCAGCCTTATCTCTTTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAAATTTTAGCCACCAACCTTATCTCTTTGAGGTAGCA
* *
85148946 AGAGAGCAGGTTGAAGATATAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGATTGAAAGTTACA
66 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGATAGAAAGTTACA
85149011 GA
131 GA
*
85149013 TCTTATCTCCATATATCGGCTATGGA
1 TCTTATCTCCATGTATCGGCTATGGA
85149039 ACAGATCGAA
Statistics
Matches: 146, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
131 60 0.41
132 86 0.59
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (132 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAAATTTTAGCCACCAACCTTATCTCTTTGAGGTAGCA
AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGATAGAAAGTTACA
GA
Found at i:85149754 original size:22 final size:20
Alignment explanation
Indices: 85149729--85149768 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
85149719 AAAGCCTCAT
85149729 TTTTCTTTCGATTTTATTTTCC
1 TTTTCTTT-GATTTT-TTTTCC
85149751 TTTTCTTTGATTTTTTTT
1 TTTTCTTTGATTTTTTTT
85149769 ATCTATTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 6 0.33
22 8 0.44
ACGTcount: A:0.07, C:0.12, G:0.05, T:0.75
Consensus pattern (20 bp):
TTTTCTTTGATTTTTTTTCC
Found at i:85150911 original size:45 final size:44
Alignment explanation
Indices: 85150822--85151058 Score: 115
Period size: 45 Copynumber: 5.3 Consensus size: 44
85150812 TGGTGGCTTA
* ** * **
85150822 AATCTGCTTCACTGTAACTTCAGGAAGGCAATATTCGCCTTCTTC
1 AATCTGCTCCACTACAACTTCAGGAAGGCAAGATT-GCAATCTTC
*
85150867 AATCTGCTCCACTACAACTTCAGGGAGGCAAGATCTGCAATCTTC
1 AATCTGCTCCACTACAACTTCAGGAAGGCAAGAT-TGCAATCTTC
** * ** ** * *
85150912 AGCCTACTCCACTACTGCTT-AGGAAGATATGA-TG--ATGGCTTA
1 AATCTGCTCCACTACAACTTCAGGAAGGCAAGATTGCAAT--CTTC
* * * * ** *
85150954 AATTTACTTCATTGTAACTTCAGGAAGGCAAGATT-CACCGTCTTC
1 AATCTGCTCCACTACAACTTCAGGAAGGCAAGATTGCA--ATCTTC
* * *
85150999 GATCTGCTCCACTACAATTTCAGGGAGGCAAGATCTGCAATCTTC
1 AATCTGCTCCACTACAACTTCAGGAAGGCAAGAT-TGCAATCTTC
** *
85151044 AGCCTACTCCACTAC
1 AATCTGCTCCACTAC
85151059 TGCTTAGGGA
Statistics
Matches: 136, Mismatches: 45, Indels: 22
0.67 0.22 0.11
Matches are distributed among these distances:
40 2 0.01
42 16 0.12
43 9 0.07
44 9 0.07
45 95 0.70
46 2 0.01
47 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (44 bp):
AATCTGCTCCACTACAACTTCAGGAAGGCAAGATTGCAATCTTC
Found at i:85150916 original size:132 final size:132
Alignment explanation
Indices: 85150753--85151199 Score: 653
Period size: 132 Copynumber: 3.4 Consensus size: 132
85150743 CTATTGCAAA
* * * *
85150753 TTCAGGGAGACAAGATCTGCAATCTTTAGCCTACTTCACTACTACTTAGGGAGATAGGATGGTGG
1 TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGG
* * *
85150818 CTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAATATTCGCCTTCTTCAATCTGCTCCACTACA
66 CTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGATCTGCTCCACTACA
85150883 AC
131 AC
* * *
85150885 TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGAAGATATGATGATGG
1 TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGG
* * * *
85150950 CTTAAATTTACTTCATTGTAACTTCAGGAAGGCAAGATTCACCGTCTTCGATCTGCTCCACTACA
66 CTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGATCTGCTCCACTACA
*
85151015 AT
131 AC
85151017 TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGG
1 TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGG
* * * **
85151082 CTAAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTTGCCGTCTTCGATCTGCTCTACTGTA
66 CTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGATCTGCTCCACTACA
85151147 AC
131 AC
* * * **
85151149 TTCAGGGAGGCAAGATCTGTAATTTTCAGTCTGTTACC-CTACTGCTTAGGG
1 TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACT-CCACTACTGCTTAGGG
85151200 GGTTAAAGCC
Statistics
Matches: 281, Mismatches: 33, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
132 279 0.99
133 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (132 bp):
TTCAGGGAGGCAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGG
CTTAAATCTGCTTCACTGTAACTTCAGGAAGGCAAGATTCGCCGTCTTCGATCTGCTCCACTACA
AC
Found at i:85151274 original size:87 final size:86
Alignment explanation
Indices: 85151160--85151980 Score: 776
Period size: 87 Copynumber: 9.5 Consensus size: 86
85151150 TCAGGGAGGC
* * * * *
85151160 AAGATCTGTAATTTTCAGTCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCT
1 AAGATCTGTAA-ATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCT
*
85151225 GTTTCCCTACTACTTAGGGGTTT
65 GTTTCCCTACTGCTTAGGGG-TT
* **
85151248 AAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGTCTTTGATCTG
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCTG
85151313 TTTCCCTACTGCTTAGGGGGTT
66 TTTCCCTACTGCTTA-GGGGTT
* * * **
85151335 AAGATCTAT-AATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCTCATCGCCTTTGATCTG
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCTG
* *
85151399 CTTCCCTACTGCTTAAGGGTT
66 TTTCCCTACTGCTTAGGGGTT
** ** * * * ** * *
85151420 AAGATCCATCACCTTC-GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGATC
1 AAGATCTGT-AAATTCAG-CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATC
*
85151484 TATTTCCCTACTGCTTAGGGGGTT
64 TGTTTCCCTACTGCTTA-GGGGTT
* * * * * *
85151508 AAGATCTGTAAATTTAGCCTGTTACCCTACTGCGTAGGGGTTTAAGGCTCTTAACCTTTGATCTG
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCTG
* **
85151573 -TTCCACCACTGCTTAGGGAGAC
66 TTTCC-CTACTGCTTAGGG-GTT
* * * * * * *
85151595 AAAATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCTTCGTTTTTGATTTG
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCTG
* **
85151660 -CTCCACTACTGCTTAGGGAGAC
66 TTTCC-CTACTGCTTAGGG-GTT
* * * * * * *
85151682 AAGATCTGTAAATTTAGCCTGTTATCGTACTACTTACGGGG-TTAAGGCCCTTCGTCTTCGATCT
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTA-GGGGTTTAAGGCCCATCATCTTTGATCT
* **
85151746 G-CTCCACTACTGCTTAGGGAGAC
65 GTTTCC-CTACTGCTTAGGG-GTT
* * * ** * *
85151769 AAGATCTGT-AATTCAGCCTGTTACCCTAATACTTAGGGGTTTAAGGTCTGTCACCTTCGATCTG
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCTG
* * **
85151833 TTTCCCTATTACTTAGGGAGAC
66 TTTCCCTACTGCTTAGGG-GTT
* * * *
85151855 AAGATCTGTAAATTTAGCCTGTTACCTTACTGCTTAGAGGG-TTAAGGACCTTCATCTTTGATCT
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG-GGGTTTAAGGCCCATCATCTTTGATCT
85151919 GTTTCCCTACTGCTTAAGGGGTT
65 GTTTCCCTACTGCTT-AGGGGTT
* *
85151942 AAGATTTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG
1 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
85151981 AGATAAGGCT
Statistics
Matches: 618, Mismatches: 101, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
85 17 0.03
86 139 0.22
87 424 0.69
88 38 0.06
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (86 bp):
AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTTGATCTG
TTTCCCTACTGCTTAGGGGTT
Found at i:85151510 original size:44 final size:44
Alignment explanation
Indices: 85151178--85151514 Score: 303
Period size: 44 Copynumber: 7.8 Consensus size: 44
85151168 TAATTTTCAG
* * *
85151178 TCTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTCGA
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGA-TCTATCATCTTCGA
* * * **
85151222 TCTGTTTCCCTACTACTTAGGGGTTTAAGATCTGT-AAATTC-A
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
* * * ** * ** *
85151264 GCTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGTCTTTGA
1 TC-TGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
*
85151309 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTAT-A-ATTC-A
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
* * * * * ** *
85151350 GCCTGTTACCCTACTGCTTAAGGGTTTAAG-GCTCATCGCCTTTGA
1 -TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-ATCATCTTCGA
* * * *
85151395 TCTGCTTCCCTACTGCTTA-AGGGTTAAGATCCATCACCTTCGA
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
85151438 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
*
85151482 TCTATTTCCCTACTGCTTAGGGGGTTAAGATCT
1 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
85151515 GTAAATTTAG
Statistics
Matches: 232, Mismatches: 50, Indels: 22
0.76 0.16 0.07
Matches are distributed among these distances:
41 3 0.01
42 31 0.13
43 65 0.28
44 129 0.56
45 4 0.02
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (44 bp):
TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGA
Found at i:85151553 original size:43 final size:43
Alignment explanation
Indices: 85151160--85151980 Score: 295
Period size: 44 Copynumber: 18.9 Consensus size: 43
85151150 TCAGGGAGGC
*
85151160 AAGATCTGTAATTTTCAG-TCTGTTACCCTACTGCTTAGGGGGTT
1 AAGATCTGTAA-TTT-AGATCTGTTACCCTACTGCTTAGGGGTTT
* ** * * * *
85151204 AA-AGCCCATCATCTTCGATCTGTTTCCCTACTACTTAGGGGTTT
1 AAGA-TCTGTAAT-TTAGATCTGTTACCCTACTGCTTAGGGGTTT
* *
85151248 AAGATCTGTAAATTCAGCT-TGTTACCCTACTGCTTAGGGGTTT
1 AAGATCTGT-AATTTAGATCTGTTACCCTACTGCTTAGGGGTTT
* * *
85151291 AAGGCCCAT-TGT-CTTT-GATCTGTTTCCCTACTGCTTAGGGGGTT
1 AA-G---ATCTGTAATTTAGATCTGTTACCCTACTGCTTAGGGGTTT
* * * *
85151335 AAGATCTATAATTCAG-CCTGTTACCCTACTGCTTAAGGGTTT
1 AAGATCTGTAATTTAGATCTGTTACCCTACTGCTTAGGGGTTT
* ** *
85151377 AAGGCTCATCG-CCTTT-GATCTGCTT-CCCTACTGCTTAAGGG-TT
1 AA-GATC-T-GTAATTTAGATCTG-TTACCCTACTGCTTAGGGGTTT
** ** * * *
85151420 AAGATCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
1 AAGATCTGT-AATTTAGATCTGTTACCCTACTGCTTAGGGGTTT
* * * * * *
85151464 AAGATCTATCATCTTCGATCTATTTCCCTACTGCTTAGGGGGTT
1 AAGATCTGTAAT-TTAGATCTGTTACCCTACTGCTTAGGGGTTT
* *
85151508 AAGATCTGTAAATTTAG-CCTGTTACCCTACTGCGTAGGGGTTT
1 AAGATCTGT-AATTTAGATCTGTTACCCTACTGCTTAGGGGTTT
* * **
85151551 AAGGCTCT-TAACCTTT-GATCTGTT-CCACCACTGCTTAGGGAG-AC
1 AA-GATCTGTAA--TTTAGATCTGTTACC-CTACTGCTTAGGG-GTTT
* * *
85151595 AAAATCTGTAAATTTAG-CCTGTTACCCTACTGCTTAGGAGTTT
1 AAGATCTGT-AATTTAGATCTGTTACCCTACTGCTTAGGGGTTT
** * * * **
85151638 AAGGCCCTTCGT--TTTTGATTTGCT-CCACTACTGCTTAGGGAG-AC
1 AA-GATC-T-GTAATTTAGATCTGTTACC-CTACTGCTTAGGG-GTTT
* * * *
85151682 AAGATCTGTAAATTTAG-CCTGTTATCGTACTACTTACGGGG-TT
1 AAGATCTGT-AATTTAGATCTGTTACCCTACTGCTTA-GGGGTTT
** ** * * **
85151725 AAGGCCCT-TCGTCTTCGATCTGCT-CCACTACTGCTTAGGGAG-AC
1 AA-GATCTGTAAT-TTAGATCTGTTACC-CTACTGCTTAGGG-GTTT
* * * *
85151769 AAGATCTGTAATTCAG-CCTGTTACCCTAATACTTAGGGGTTT
1 AAGATCTGTAATTTAGATCTGTTACCCTACTGCTTAGGGGTTT
* ** * * * * **
85151811 AAGGTCTGTCACCTTCGATCTGTTTCCCTATTACTTAGGGAG-AC
1 AAGATCTGT-AATTTAGATCTGTTACCCTACTGCTTAGGG-GTTT
* *
85151855 AAGATCTGTAAATTTAG-CCTGTTACCTTACTGCTTAGAGGG-TT
1 AAGATCTGT-AATTTAGATCTGTTACCCTACTGCTTAG-GGGTTT
* * * *
85151898 AAGGACCT-TCATCTTTGATCTGTTTCCCTACTGCTTAAGGGG-TT
1 AA-GATCTGTAAT-TTAGATCTGTTACCCTACTGCTT-AGGGGTTT
* *
85151942 AAGATTTGTAAATTTAG-CCTGTTACCCTACTGCTTAGGG
1 AAGATCTGT-AATTTAGATCTGTTACCCTACTGCTTAGGG
85151981 AGATAAGGCT
Statistics
Matches: 566, Mismatches: 146, Indels: 132
0.67 0.17 0.16
Matches are distributed among these distances:
40 2 0.00
41 5 0.01
42 68 0.12
43 192 0.34
44 275 0.49
45 17 0.03
46 5 0.01
47 2 0.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (43 bp):
AAGATCTGTAATTTAGATCTGTTACCCTACTGCTTAGGGGTTT
Found at i:85151806 original size:347 final size:344
Alignment explanation
Indices: 85151147--85151979 Score: 951
Period size: 347 Copynumber: 2.4 Consensus size: 344
85151137 CTCTACTGTA
* * * * *
85151147 ACTTCAGGGAGGCAAGATCTGTAATTTTCAGTCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCA
1 ACTT-AGGGAGACAAGATCTGTAAATTT-AGCCTGTTACCCTACTGCTTA-GGGGTT-AAGGCCT
* * * *
85151212 TCATCTTCGATCTGTTTCCCTACTACTTAGGGGTTTAAGATCTGTAAATTCAGCTTGTTACCCTA
62 TCATCTTTGATCTGTTTCCCTACTGCTTAGGGG-TTAAGATCTGTAAATTTAGCCTGTTACCCTA
* * * **
85151277 CTGCTTAGGGGTTTAAGGCCCATTGTCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
126 CTGCTTAGGAGTTTAAGGCCCATTGTCTTTGATCTGTCTCCCTACTGCTTAGGGAGACAAGATCT
* * * *
85151342 ATAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCTCATCGCCTTTGATCTGCTTCCCTA
191 ATAATTCAGCCTGTTACCCTACTACTTAAGGGGTTAAGGCCCATCGCCTTCGATCTGCTTCCCTA
** * * * * *
85151407 CTGCTTAAGGGTTAAGATCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTA
256 CTGCTTAAGGGACAAGATCCATCACATTCGACCTGTTACCCTAATACTTAGGGGGTTAAGATCTA
*
85151472 TCATCTTCGATCTATTTCCCTACT
321 TCACCTTCGATCTATTTCCCTACT
* * ** * *
85151496 GCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCGTAGGGGTTTAAGGCTCTTA
1 ACTTAGGGAGACAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGC-CTTC
* * ** *
85151561 ACCTTTGATCTG-TTCCACCACTGCTTAGGGAGACAAAATCTGTAAATTTAGCCTGTTACCCTAC
64 ATCTTTGATCTGTTTCC-CTACTGCTTAGGG-GTTAAGATCTGTAAATTTAGCCTGTTACCCTAC
* *
85151625 TGCTTAGGAGTTTAAGGCCC-TTCGTTTTTGATTTG-CTCCACTACTGCTTAGGGAGACAAGATC
127 TGCTTAGGAGTTTAAGGCCCATT-GTCTTTGATCTGTCTCC-CTACTGCTTAGGGAGACAAGATC
* * * * * * *
85151688 TGTAAATTTAGCCTGTTATCGTACTACTTACGGGGTTAAGGCCCTTCGTCTTCGATCTGC-TCCA
190 TAT-AATTCAGCCTGTTACCCTACTACTTAAGGGGTTAAGGCCCATCGCCTTCGATCTGCTTCC-
* ** *
85151752 CTACTGCTTAGGGAGACAAGATCTGT-A-ATTC-AGCCTGTTACCCTAATACTTAGGGGTTTAAG
253 CTACTGCTTAAGG-GACAAGATCCATCACATTCGA-CCTGTTACCCTAATACTTAGGGGGTTAAG
* * * *
85151814 GTCTGTCACCTTCGATCTGTTTCCCTATT
316 ATCTATCACCTTCGATCTATTTCCCTACT
*
85151843 ACTTAGGGAGACAAGATCTGTAAATTTAGCCTGTTACCTTACTGCTTAGAGGGTTAAGGACCTTC
1 ACTTAGGGAGACAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAG-GGGTTAAGG-CCTTC
*
85151908 ATCTTTGATCTGTTTCCCTACTGCTTAAGGGGTTAAGATTTGTAAATTTAGCCTGTTACCCTACT
64 ATCTTTGATCTGTTTCCCTACTGCTT-AGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACT
85151973 GCTTAGG
128 GCTTAGG
85151980 GAGATAAGGC
Statistics
Matches: 404, Mismatches: 66, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
346 18 0.04
347 284 0.70
348 91 0.23
349 11 0.03
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (344 bp):
ACTTAGGGAGACAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCTTCAT
CTTTGATCTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCT
TAGGAGTTTAAGGCCCATTGTCTTTGATCTGTCTCCCTACTGCTTAGGGAGACAAGATCTATAAT
TCAGCCTGTTACCCTACTACTTAAGGGGTTAAGGCCCATCGCCTTCGATCTGCTTCCCTACTGCT
TAAGGGACAAGATCCATCACATTCGACCTGTTACCCTAATACTTAGGGGGTTAAGATCTATCACC
TTCGATCTATTTCCCTACT
Found at i:85151891 original size:260 final size:255
Alignment explanation
Indices: 85151159--85151980 Score: 866
Period size: 260 Copynumber: 3.2 Consensus size: 255
85151149 TTCAGGGAGG
* * * *
85151159 CAAGATCTGTAATTTTCAGTCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATC
1 CAAGATCTGTAAATTT-AGCCTGTTATCCTACTGCTTAGGGGGTT-AAGCCCTTCATCTTCGATC
* *
85151224 TGTTTCCCTACTACTTAGGGGTTTAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGT
64 TG-TTCCCTACTGCTTAGGGG-TTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGT
* ** * ** * *
85151289 TTAAGGCCCATT-GTCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTAT-AATTCAGC
127 TTAAGG-TC-TTAACCTTTGATCTGTTTCCCTACTGCTTAGGGAGACAAGATCTGTAAATTTAGC
* * * *
85151352 CTGTTACCCTACTGCTTAAGG-GTTTAAGGCTCATCGCCTTTGATCTGCTTCCCTACTGCTTAAG
190 CTGTTACCCTACTGCTT-AGGAGTTTAAGGCCCTTCGTCTTTGATCTGC-TCCCTACTGCTTAGG
85151416 GGT
253 GGT
* ** * ** * * **
85151419 TAAGATCCATCACCTTCGATCTGTT-TCCCTACTGCTTAGGGGGTTAAGATCTATCATCTTCGAT
1 CAAGATCTGTAAATTTAG-CCTGTTAT-CCTACTGCTTAGGGGGTTAAGCCCT-TCATCTTCGAT
* * *
85151483 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCGTAGGGG
63 CT-GTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
* *
85151548 TTTAAGGCTCTTAACCTTTGATCTG-TTCCACCACTGCTTAGGGAGACAAAATCTGTAAATTTAG
126 TTTAAGG-TCTTAACCTTTGATCTGTTTCC-CTACTGCTTAGGGAGACAAGATCTGTAAATTTAG
* *
85151612 CCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCTTCGTTTTTGATTTGCTCCACTACTGCTTAGG
189 CCTGTTACCCTACTGCTTAGGAGTTTAAGGCCCTTCGTCTTTGATCTGCTCC-CTACTGCTTAGG
*
85151677 GAGA
253 G-GT
* * * *
85151681 CAAGATCTGTAAATTTAGCCTGTTATCGTACTACTTACGGGGTTAAGGCCCTTCGTCTTCGATCT
1 CAAGATCTGTAAATTTAGCCTGTTATCCTACTGCTTAGGGGGTTAA-GCCCTTCATCTTCGATCT
* ** * *
85151746 GCTCCACTACTGCTTAGGGAGACAAGATCTGT-AATTCAGCCTGTTACCCTAATACTTAGGGGTT
65 GTTCC-CTACTGCTTAGGG-GTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTT
* * * *
85151810 TAAGGTCTGTCACCTTCGATCTGTTTCCCTATTACTTAGGGAGACAAGATCTGTAAATTTAGCCT
128 TAAGGTCT-TAACCTTTGATCTGTTTCCCTACTGCTTAGGGAGACAAGATCTGTAAATTTAGCCT
* * * * *
85151875 GTTACCTTACTGCTTA-GAGGGTTAAGGACCTTCATCTTTGATCTGTTTCCCTACTGCTTAAGGG
192 GTTACCCTACTGCTTAGGA-GTTTAAGGCCCTTCGTCTTTGATCTG-CTCCCTACTGCTT-AGGG
85151939 GT
254 GT
* * *
85151941 TAAGATTTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG
1 CAAGATCTGTAAATTTAGCCTGTTATCCTACTGCTTAGGG
85151981 AGATAAGGCT
Statistics
Matches: 467, Mismatches: 75, Indels: 40
0.80 0.13 0.07
Matches are distributed among these distances:
259 16 0.03
260 308 0.66
261 127 0.27
262 16 0.03
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.36
Consensus pattern (255 bp):
CAAGATCTGTAAATTTAGCCTGTTATCCTACTGCTTAGGGGGTTAAGCCCTTCATCTTCGATCTG
TTCCCTACTGCTTAGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA
GGTCTTAACCTTTGATCTGTTTCCCTACTGCTTAGGGAGACAAGATCTGTAAATTTAGCCTGTTA
CCCTACTGCTTAGGAGTTTAAGGCCCTTCGTCTTTGATCTGCTCCCTACTGCTTAGGGGT
Found at i:85152168 original size:64 final size:64
Alignment explanation
Indices: 85152063--85152185 Score: 194
Period size: 64 Copynumber: 1.9 Consensus size: 64
85152053 GTATCTATGT
*
85152063 TTATGCCAAATAATGAGGATGCTATGATTGAAATGGATCAAATGCTCCTAACTAAATGTAATGC
1 TTATGCCAAATAATGAGGATGCTATGATCGAAATGGATCAAATGCTCCTAACTAAATGTAATGC
* * *
85152127 TTATGTCAAATAATTAGGATGCTATGATCGAAAT-GAGTCAAATGCTCCTAACTAGATGT
1 TTATGCCAAATAATGAGGATGCTATGATCGAAATGGA-TCAAATGCTCCTAACTAAATGT
85152186 GTAGAAATGC
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
63 2 0.04
64 52 0.96
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (64 bp):
TTATGCCAAATAATGAGGATGCTATGATCGAAATGGATCAAATGCTCCTAACTAAATGTAATGC
Found at i:85156665 original size:9 final size:10
Alignment explanation
Indices: 85156652--85156697 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 10
85156642 GGGAAAGTCT
85156652 AATGCAAAT-
1 AATGCAAATG
85156661 AATGC-AATG
1 AATGCAAATG
85156670 CAATGCAAATG
1 -AATGCAAATG
*
85156681 CATG-AAATG
1 AATGCAAATG
85156690 AATGCAAA
1 AATGCAAA
85156698 AGAAAGGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
8 3 0.10
9 13 0.42
10 11 0.35
11 4 0.13
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (10 bp):
AATGCAAATG
Found at i:85156676 original size:19 final size:19
Alignment explanation
Indices: 85156652--85156697 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
85156642 GGGAAAGTCT
*
85156652 AATGCAAAT-AATGCAATG
1 AATGCAAATGAATGAAATG
*
85156670 CAATGCAAATGCATGAAATG
1 -AATGCAAATGAATGAAATG
85156690 AATGCAAA
1 AATGCAAA
85156698 AGAAAGGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (19 bp):
AATGCAAATGAATGAAATG
Found at i:85158853 original size:15 final size:15
Alignment explanation
Indices: 85158835--85158865 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
85158825 AACGAGAATG
85158835 ATAATAATAATATAA
1 ATAATAATAATATAA
*
85158850 ATAATAATAGTATAA
1 ATAATAATAATATAA
85158865 A
1 A
85158866 ACGATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
ATAATAATAATATAA
Found at i:85159357 original size:23 final size:23
Alignment explanation
Indices: 85159326--85159369 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
85159316 ATTGAGTATT
*
85159326 AAAAGTATATACATAATATAGAC
1 AAAAATATATACATAATATAGAC
*
85159349 AAAAATATATGCATAATATAG
1 AAAAATATATACATAATATAG
85159370 TATTGAAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.57, C:0.07, G:0.09, T:0.27
Consensus pattern (23 bp):
AAAAATATATACATAATATAGAC
Found at i:85159379 original size:48 final size:48
Alignment explanation
Indices: 85159320--85159452 Score: 137
Period size: 49 Copynumber: 2.8 Consensus size: 48
85159310 ATTAGTATTG
* *
85159320 AGTATTAAAAGTATATACATAATATAGACAAAAATATATGCATAATAT
1 AGTATTAAAAGTATATACATAATATAGATAAAAATATATGAATAATAT
* * * * *
85159368 AGTATTGAAAGTATTTTCATGGAATA-ATATAAAAATATATGAATAATGT
1 AGTATTAAAAGTATATACAT--AATATAGATAAAAATATATGAATAATAT
*
85159417 -GATATTAAAAATATATACATAA-ATAAGATAAAAATA
1 AG-TATTAAAAGTATATACATAATAT-AGATAAAAATA
85159453 AGAAATCAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
46 1 0.01
47 2 0.03
48 28 0.41
49 33 0.49
50 4 0.06
ACGTcount: A:0.54, C:0.04, G:0.10, T:0.32
Consensus pattern (48 bp):
AGTATTAAAAGTATATACATAATATAGATAAAAATATATGAATAATAT
Found at i:85159798 original size:21 final size:22
Alignment explanation
Indices: 85159772--85159813 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
85159762 ATATATAATA
85159772 AAATAACTTAATATA-AATAAG
1 AAATAACTTAATATAGAATAAG
*
85159793 AAATAATTTAATATAGAATAA
1 AAATAACTTAATATAGAATAA
85159814 TAAAATAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (22 bp):
AAATAACTTAATATAGAATAAG
Found at i:85164287 original size:13 final size:12
Alignment explanation
Indices: 85164257--85164312 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
85164247 AATGTGAAAC
*
85164257 AAAAAGAAATTG
1 AAAAAGAAGTTG
85164269 AAAAAGAAGTTG
1 AAAAAGAAGTTG
*
85164281 AAGAAAGAAG-AG
1 AA-AAAGAAGTTG
*
85164293 AAAATG-AGTTAG
1 AAAAAGAAGTT-G
85164305 AAAAAGAA
1 AAAAAGAA
85164313 ACAAAAGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 22 0.63
13 8 0.23
ACGTcount: A:0.64, C:0.00, G:0.23, T:0.12
Consensus pattern (12 bp):
AAAAAGAAGTTG
Found at i:85168719 original size:23 final size:23
Alignment explanation
Indices: 85168689--85168738 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
85168679 TGGTATTTCT
85168689 ATAATCCGAATACTTCAAAGGAA
1 ATAATCCGAATACTTCAAAGGAA
*
85168712 ATAATCCGATTACTTCAAAGGAA
1 ATAATCCGAATACTTCAAAGGAA
85168735 ATAA
1 ATAA
85168739 CATTATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.24
Consensus pattern (23 bp):
ATAATCCGAATACTTCAAAGGAA
Found at i:85170157 original size:5 final size:5
Alignment explanation
Indices: 85170149--85170215 Score: 134
Period size: 5 Copynumber: 13.4 Consensus size: 5
85170139 CTTTATGTTT
85170149 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
85170199 TAATA TAATA TAATA TA
1 TAATA TAATA TAATA TA
85170216 TTAACATAAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 62 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:85176683 original size:27 final size:27
Alignment explanation
Indices: 85176652--85176802 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
85176642 TAAATTGTAC
*
85176652 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
85176679 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
85176705 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* * *
85176733 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAAT-TGACTATGT
* * *
85176761 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
85176788 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85176803 GGCTCAATAT
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
27 80 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:85176769 original size:82 final size:81
Alignment explanation
Indices: 85176653--85176802 Score: 212
Period size: 82 Copynumber: 1.8 Consensus size: 81
85176643 AAATTGTACA
* * *
85176653 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATAT-ATAGCACTAAGTG
85176717 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** * *
85176734 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTG
1 GCACTAAGTGTGCGA-TCTAACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTG
85176799 TGCG
65 TGCG
85176803 GGCTCAATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 17 0.28
82 43 0.72
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85176813 original size:27 final size:26
Alignment explanation
Indices: 85176734--85176813 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 26
85176724 TGACCATGCG
*
85176734 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAGTC-AA-TATATA
* *
85176762 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAG-TCAATATATA
* *
85176789 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAG-TCAATATA
85176814 CATTCGTGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
27 25 0.58
28 17 0.40
29 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGAGTCAATATATA
Found at i:85183432 original size:40 final size:40
Alignment explanation
Indices: 85183371--85183450 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
85183361 CTTCAATTGC
*
85183371 ACGTACTTTACCCGGGAAACTTATGTGCATGGATTCTTGT
1 ACGTACTTTACCCGGGAAACTTATGTGCATGAATTCTTGT
85183411 ACGTACTTTACCC-GGACAACTTATGTGCATGAATTCTTGT
1 ACGTACTTTACCCGGGA-AACTTATGTGCATGAATTCTTGT
85183451 GTGCATGAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 3 0.08
40 35 0.92
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (40 bp):
ACGTACTTTACCCGGGAAACTTATGTGCATGAATTCTTGT
Found at i:85187859 original size:12 final size:12
Alignment explanation
Indices: 85187842--85187874 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
85187832 CAAATGTAGC
85187842 ATAAAAAATACA
1 ATAAAAAATACA
85187854 ATAAAAAATACA
1 ATAAAAAATACA
85187866 ATAAGAAAA
1 ATAA-AAAA
85187875 CATTAAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.76, C:0.06, G:0.03, T:0.15
Consensus pattern (12 bp):
ATAAAAAATACA
Found at i:85188599 original size:13 final size:14
Alignment explanation
Indices: 85188573--85188601 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
85188563 ACTAACGACG
85188573 AATTAAACCATTAT
1 AATTAAACCATTAT
85188587 AATTAAA-CATTAT
1 AATTAAACCATTAT
85188600 AA
1 AA
85188602 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:85193739 original size:9 final size:9
Alignment explanation
Indices: 85193718--85193876 Score: 73
Period size: 9 Copynumber: 18.1 Consensus size: 9
85193708 TATGTATTAC
*
85193718 GTAAGTTAA
1 GTAAGTTAT
85193727 GTAAGCTT-T
1 GTAAG-TTAT
85193736 GTAAGTTAT
1 GTAAGTTAT
85193745 GTAAGTTAT
1 GTAAGTTAT
* * *
85193754 ATTA-TGAT
1 GTAAGTTAT
* *
85193762 ATACATTTAT
1 GTA-AGTTAT
*
85193772 GTAAGGTAT
1 GTAAGTTAT
85193781 GTAAGTTAT
1 GTAAGTTAT
* *
85193790 GATATGATAT
1 G-TAAGTTAT
* *
85193800 AT-ATTTAT
1 GTAAGTTAT
85193808 GT-A-TTAT
1 GTAAGTTAT
*
85193815 GTAAGTTGT
1 GTAAGTTAT
85193824 GTAAGTTAT
1 GTAAGTTAT
*
85193833 GATAAGATAT
1 G-TAAGTTAT
* *
85193843 AT-ATTTAT
1 GTAAGTTAT
85193851 GT-A-TTAT
1 GTAAGTTAT
* *
85193858 GTTAGTTGT
1 GTAAGTTAT
85193867 GTAAGTTAT
1 GTAAGTTAT
85193876 G
1 G
85193877 ATACGATATA
Statistics
Matches: 113, Mismatches: 27, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
7 12 0.11
8 20 0.18
9 61 0.54
10 20 0.18
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:85193821 original size:34 final size:36
Alignment explanation
Indices: 85193735--85193821 Score: 126
Period size: 36 Copynumber: 2.5 Consensus size: 36
85193725 AAGTAAGCTT
85193735 TGTAAGTTATGTAAGTTATATTATGATATACATTTA
1 TGTAAGTTATGTAAGTTATATTATGATATACATTTA
* *
85193771 TGTAAGGTATGTAAGTTATGA-TATGATATATATTTA
1 TGTAAGTTATGTAAGTTAT-ATTATGATATACATTTA
85193807 TGT-A-TTATGTAAGTT
1 TGTAAGTTATGTAAGTT
85193822 GTGTAAGTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
34 10 0.21
35 1 0.02
36 35 0.74
37 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.47
Consensus pattern (36 bp):
TGTAAGTTATGTAAGTTATATTATGATATACATTTA
Found at i:85193827 original size:43 final size:43
Alignment explanation
Indices: 85193768--85193894 Score: 209
Period size: 43 Copynumber: 3.0 Consensus size: 43
85193758 TGATATACAT
* * *
85193768 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGTA
85193811 TTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGTA
1 TTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGTA
* *
85193854 TTATGTTAGTTGTGTAAGTTATGATACGATATATATTTATG
1 TTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATG
85193895 ATATATATTT
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 79 1.00
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (43 bp):
TTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGTA
Found at i:85193899 original size:13 final size:13
Alignment explanation
Indices: 85193881--85193907 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
85193871 GTTATGATAC
85193881 GATATATATTTAT
1 GATATATATTTAT
85193894 GATATATATTTAT
1 GATATATATTTAT
85193907 G
1 G
85193908 TATTGTGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (13 bp):
GATATATATTTAT
Found at i:85194379 original size:10 final size:9
Alignment explanation
Indices: 85194333--85194379 Score: 51
Period size: 10 Copynumber: 5.0 Consensus size: 9
85194323 AATTATATTA
85194333 ATTGATAAAT
1 ATTGA-AAAT
85194343 ATTG-AAAT
1 ATTGAAAAT
85194351 ATTGAAATAT
1 ATTGAAA-AT
*
85194361 ATTTAAAAT
1 ATTGAAAAT
85194370 ATTGATAAAT
1 ATTGA-AAAT
85194380 GAAATATAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
8 8 0.25
9 8 0.25
10 16 0.50
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (9 bp):
ATTGAAAAT
Found at i:85194393 original size:26 final size:27
Alignment explanation
Indices: 85194339--85194393 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
85194329 ATTAATTGAT
**
85194339 AAATATTGAAATATTGAAATATATTTA
1 AAATATTGAAATATTGAAATATAAGTA
85194366 AAATATTGATAA-A-TGAAATATAAGTA
1 AAATATTGA-AATATTGAAATATAAGTA
85194392 AA
1 AA
85194394 TCATTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 13 0.52
27 10 0.40
28 2 0.08
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (27 bp):
AAATATTGAAATATTGAAATATAAGTA
Found at i:85197715 original size:116 final size:114
Alignment explanation
Indices: 85197475--85197853 Score: 344
Period size: 116 Copynumber: 3.3 Consensus size: 114
85197465 CAAAATAAAT
* * *
85197475 TAACATTT-GCGGCG-TTTTCTCCTAGCGCCGCTAAAGGCAAACCAATTGCGGCGTTTTAACATA
1 TAACATTTAGTGGCGTTTTTCTCCTAGCGCCGCTAAAGGCAAACCAATTACGACGTTTTAACATA
* * * *
85197538 AACGCCACTAAAAATCAAACAAAACGACGCCGTTTTGATATAAATAGAA
66 AACGCCACTAAAAATCAAAAAAAACGAAGCCGTTTTCATATAAACAGAA
* ** *
85197587 TAA-ACTTTAGTGGCGTTTTTCCCCTAGCGCCGCTAAAGGCAAGTCAATTACGACG-TTTAAGCC
1 TAACA-TTTAGTGGCGTTTTTCTCCTAGCGCCGCTAAAGGCAAACCAATTACGACGTTTTAA-CA
* *
85197650 TAAAACGCCACTAAAAGTCCAAAAAAAACGAAGGCGTTTTCATATAAACAGAA
64 T-AAACGCCACTAAAAAT-CAAAAAAAACGAAGCCGTTTTCATATAAACAGAA
* * ** * * *
85197703 TAACATTTAGTGGCGTTTTATCTCCAAGCGCCGCTAAAGGCGAAA-CTATTGTGGCGTTTTACCC
1 TAACATTTAGTGGCGTTTT-TCTCCTAGCGCCGCTAAAGGC-AAACCAATTACGACGTTTTAACA
* * * * * *
85197767 TAAAATGCCACTAAGAAA-CCAATAAAACTACA-CCGTTTTGATATAAACAAAA
64 T-AAACGCCACTAA-AAATCAAAAAAAACGA-AGCCGTTTTCATATAAACAGAA
* *
85197819 TAACCA-TTAGTGGAGTTTATAC-CCTAGCGCCGCTA
1 TAA-CATTTAGTGGCGTTT-TTCTCCTAGCGCCGCTA
85197854 GCGTTTTAAC
Statistics
Matches: 221, Mismatches: 32, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
111 1 0.00
112 6 0.03
113 10 0.05
114 36 0.16
115 27 0.12
116 87 0.39
117 46 0.21
118 8 0.04
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (114 bp):
TAACATTTAGTGGCGTTTTTCTCCTAGCGCCGCTAAAGGCAAACCAATTACGACGTTTTAACATA
AACGCCACTAAAAATCAAAAAAAACGAAGCCGTTTTCATATAAACAGAA
Found at i:85197926 original size:98 final size:98
Alignment explanation
Indices: 85197756--85197951 Score: 299
Period size: 98 Copynumber: 2.0 Consensus size: 98
85197746 AACTATTGTG
* *
85197756 GCGTTTTACCCTAAAATGCCACTAAGAAACCAATAAAACTACACCGTTTTGATATAAACAAAATA
1 GCGTTTTAACCAAAAATGCCACTAAGAAACCAATAAAACTACACCGTTTTGATATAAACAAAATA
*
85197821 ACCATTAGTGG-AGTTTATACCCTAGCGCCGCTA
66 ACCATTAGTGGCA-TTTATAACCTAGCGCCGCTA
85197854 GCGTTTTAACCAAAAATGCCACTAA-AAATCC-ATAAAAACTACACCGTTTTGATATAAACAAAA
1 GCGTTTTAACCAAAAATGCCACTAAGAAA-CCAAT-AAAACTACACCGTTTTGATATAAACAAAA
* *
85197917 TAACTATTAGTGGCATTTATAACCTTGCGCCGCTA
64 TAACCATTAGTGGCATTTATAACCTAGCGCCGCTA
85197952 AATCAAACCT
Statistics
Matches: 90, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
97 5 0.06
98 84 0.93
99 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (98 bp):
GCGTTTTAACCAAAAATGCCACTAAGAAACCAATAAAACTACACCGTTTTGATATAAACAAAATA
ACCATTAGTGGCATTTATAACCTAGCGCCGCTA
Found at i:85198222 original size:16 final size:16
Alignment explanation
Indices: 85198203--85198254 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
85198193 ATCCTAAACC
85198203 ATTTAATATATATAAA
1 ATTTAATATATATAAA
* **
85198219 ATTT-ATCTATTATACC
1 ATTTAATATA-TATAAA
85198235 ATTTAATATATATAAA
1 ATTTAATATATATAAA
85198251 ATTT
1 ATTT
85198255 TTCTATTATC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
15 4 0.14
16 20 0.71
17 4 0.14
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (16 bp):
ATTTAATATATATAAA
Found at i:85198241 original size:32 final size:32
Alignment explanation
Indices: 85198200--85198263 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
85198190 TAAATCCTAA
85198200 ACCATTTAATATATATAAAATTTATCTATTAT
1 ACCATTTAATATATATAAAATTTATCTATTAT
*
85198232 ACCATTTAATATATATAAAATTTTTCTATTAT
1 ACCATTTAATATATATAAAATTTATCTATTAT
85198264 CTCTTACATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (32 bp):
ACCATTTAATATATATAAAATTTATCTATTAT
Found at i:85198512 original size:14 final size:14
Alignment explanation
Indices: 85198495--85198553 Score: 55
Period size: 14 Copynumber: 4.2 Consensus size: 14
85198485 CTCCAACCCT
*
85198495 TAAACCATACACCA
1 TAAACCATAAACCA
*
85198509 TAAACCCTAAACCA
1 TAAACCATAAACCA
* * *
85198523 CATACCTTAAACCA
1 TAAACCATAAACCA
* *
85198537 TAAACCCTAAACTA
1 TAAACCATAAACCA
85198551 TAA
1 TAA
85198554 TGATAATTAA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 36 1.00
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (14 bp):
TAAACCATAAACCA
Found at i:85198519 original size:21 final size:21
Alignment explanation
Indices: 85198489--85198542 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
85198479 CTTAATCTCC
*
85198489 AACCCTTAAACCATACACCATA
1 AACCC-TAAACCACACACCATA
* *
85198511 AACCCTAAACCACATACCTTA
1 AACCCTAAACCACACACCATA
*
85198532 AACCATAAACC
1 AACCCTAAACC
85198543 CTAAACTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 23 0.82
22 5 0.18
ACGTcount: A:0.46, C:0.37, G:0.00, T:0.17
Consensus pattern (21 bp):
AACCCTAAACCACACACCATA
Found at i:85199555 original size:41 final size:41
Alignment explanation
Indices: 85199498--85199592 Score: 145
Period size: 41 Copynumber: 2.3 Consensus size: 41
85199488 GTTATATGAC
* *
85199498 TTTTAGCGACGTTTTACAGAAAGCGCCGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
* **
85199539 TTTTAACGGCGTTTTACCTAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
85199580 TTTTAGCGGCGTT
1 TTTTAGCGGCGTT
85199593 AAAACGCCGC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
Found at i:85202010 original size:33 final size:33
Alignment explanation
Indices: 85201938--85202011 Score: 121
Period size: 33 Copynumber: 2.2 Consensus size: 33
85201928 GCCATATGAT
* * *
85201938 CCACACAGCCAAGGCCAGTATAGGCCGTTTGGG
1 CCACACGGCCAAGGCCAATATAGGCCGTGTGGG
85201971 CCACACGGCCAAGGCCAATATAGGCCGTGTGGG
1 CCACACGGCCAAGGCCAATATAGGCCGTGTGGG
85202004 CCACACGG
1 CCACACGG
85202012 GCATACCAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.24, C:0.32, G:0.31, T:0.12
Consensus pattern (33 bp):
CCACACGGCCAAGGCCAATATAGGCCGTGTGGG
Found at i:85205071 original size:29 final size:29
Alignment explanation
Indices: 85204989--85205087 Score: 155
Period size: 29 Copynumber: 3.4 Consensus size: 29
85204979 TGTGTGTACC
85204989 ATGTGAAAAGGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
*
85205018 ATGT-AAAAGGGGGATAGCTTCGGCTATCAA
1 ATGTGAAAA--GGGATAGCTTCGGCTATCGA
*
85205048 ATGTGAAAAGGGATAGCTTTGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
85205077 ATGTGAAAAGG
1 ATGTGAAAAGG
85205088 TTAGGTATAC
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
28 4 0.06
29 33 0.52
30 23 0.36
31 4 0.06
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.24
Consensus pattern (29 bp):
ATGTGAAAAGGGATAGCTTCGGCTATCGA
Found at i:85205127 original size:33 final size:33
Alignment explanation
Indices: 85205080--85205209 Score: 188
Period size: 33 Copynumber: 3.9 Consensus size: 33
85205070 CTATCGAATG
** *
85205080 TGAAAAGGTTAGGTATACTTTTTGTATACCATA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCATA
* *
85205113 TAAAAAGAAAAGGTATACTTTGTGTATACCATA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCATA
*
85205146 TGAAAAGGAAAGGTATACTTTGTGTGTACCATA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCATA
* *
85205179 TGAAAAGGAAATGTATACTTTGTGTGTACCA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCA
85205210 CTCAGAAAGA
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 88 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (33 bp):
TGAAAAGGAAAGGTATACTTTGTGTATACCATA
Found at i:85209194 original size:17 final size:17
Alignment explanation
Indices: 85209174--85209222 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 17
85209164 AATCTTAATT
85209174 AATAAATTAATTACGAA
1 AATAAATTAATTACGAA
*
85209191 AAT-AATTCA--A-GAA
1 AATAAATTAATTACGAA
85209204 AA-AAATTAATTACGAA
1 AATAAATTAATTACGAA
85209220 AAT
1 AAT
85209223 GATCTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
13 10 0.40
14 1 0.04
15 1 0.04
16 10 0.40
17 3 0.12
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (17 bp):
AATAAATTAATTACGAA
Found at i:85212817 original size:38 final size:38
Alignment explanation
Indices: 85212775--85212850 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
85212765 TTCAGCAAAG
*
85212775 TTACTTTTCCCAGTTACCTTTGATTATTCCAAAAAAAA
1 TTACTTTTCCCAGTTAACTTTGATTATTCCAAAAAAAA
85212813 TTACTTTTCCCAGTTAACTTTGATTATTCCAAAAAAAA
1 TTACTTTTCCCAGTTAACTTTGATTATTCCAAAAAAAA
85212851 AAATTAGCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.39
Consensus pattern (38 bp):
TTACTTTTCCCAGTTAACTTTGATTATTCCAAAAAAAA
Found at i:85229769 original size:18 final size:18
Alignment explanation
Indices: 85229725--85229769 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
85229715 TAAAAAAAAT
85229725 TTAAAAATA--AAAATTA
1 TTAAAAATATTAAAATTA
*
85229741 TTAAAATTATTAAAATGTA
1 TTAAAAATATTAAAAT-TA
85229760 -TAAAAATATT
1 TTAAAAATATT
85229770 TTTAATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 8 0.33
18 14 0.58
19 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
TTAAAAATATTAAAATTA
Found at i:85230888 original size:30 final size:30
Alignment explanation
Indices: 85230848--85230904 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
85230838 TTTTATAAAT
85230848 AATTCATA-TTTAT-TACTTAAAAATATTTAA
1 AATTCATATTTTATATA-TT-AAAATATTTAA
*
85230878 AATTTATATTTTATATATTAAAATATT
1 AATTCATATTTTATATATTAAAATATT
85230905 AACAAGAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 15 0.62
31 7 0.29
32 2 0.08
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (30 bp):
AATTCATATTTTATATATTAAAATATTTAA
Found at i:85235905 original size:50 final size:50
Alignment explanation
Indices: 85235827--85235930 Score: 163
Period size: 50 Copynumber: 2.1 Consensus size: 50
85235817 GAAGAAGAGG
* *
85235827 GAGTCGTTCTAGAATCTGAAGGACCGGATAAAGAAGAAAATTGACAATTA
1 GAGTCGTTCCAGAATCTAAAGGACCGGATAAAGAAGAAAATTGACAATTA
* * *
85235877 GAGTCGTTCCAGAATCTAAAGGATCGGATAAATAAGAAAATTGACAATTG
1 GAGTCGTTCCAGAATCTAAAGGACCGGATAAAGAAGAAAATTGACAATTA
85235927 GAGT
1 GAGT
85235931 ACTAGGCACC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.23
Consensus pattern (50 bp):
GAGTCGTTCCAGAATCTAAAGGACCGGATAAAGAAGAAAATTGACAATTA
Found at i:85241554 original size:17 final size:17
Alignment explanation
Indices: 85241532--85241567 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
85241522 TACACAATAT
85241532 CCCTTTGGTTGAAAGAG
1 CCCTTTGGTTGAAAGAG
85241549 CCCTTTGGTTGAAAGAG
1 CCCTTTGGTTGAAAGAG
85241566 CC
1 CC
85241568 GAAACTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (17 bp):
CCCTTTGGTTGAAAGAG
Found at i:85249662 original size:46 final size:47
Alignment explanation
Indices: 85249562--85249732 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 47
85249552 ATTGTGAGCT
* * * * * *
85249562 AGTGTAAGACCATGTCTGGAACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA-AGCC
85249610 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG-AAGCC
* *
85249656 AGTGTAAGA-CATGTCTAGGACAT-GCATCGG-CTACGAGATG-GGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGAAGCC
85249700 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
85249733 ATCCTACCCC
Statistics
Matches: 109, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
44 12 0.11
45 15 0.14
46 59 0.54
47 14 0.13
48 9 0.08
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.21
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGAAGCC
Found at i:85257620 original size:57 final size:57
Alignment explanation
Indices: 85257518--85257649 Score: 178
Period size: 57 Copynumber: 2.3 Consensus size: 57
85257508 TTAATTCATA
* *
85257518 TAATAATAATTATATTAAGAATTTTATTAAATTATATATTATTTTATTAAATTATATT
1 TAATAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATTAAATTAT-TT
* * *
85257576 TAATAATAATTA-AGTTAA-AATATGGTTAAATTATTTATTTTTTTATTAAATTATTT
1 TAATAATAATTATA-TTAAGAATATGATTAAATTATATATTATTTTATTAAATTATTT
*
85257632 TAATAATAATTTTATTAA
1 TAATAATAATTATATTAA
85257650 AATTTAATAA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
56 17 0.26
57 33 0.50
58 16 0.24
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (57 bp):
TAATAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATTAAATTATTT
Found at i:85257839 original size:16 final size:16
Alignment explanation
Indices: 85257818--85257870 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
85257808 TTGAATTACT
85257818 AATTATAGCTCTATTC
1 AATTATAGCTCTATTC
*
85257834 AATTATAGCTTTATTC
1 AATTATAGCTCTATTC
* *
85257850 AATTACAGCCCTATTC
1 AATTATAGCTCTATTC
*
85257866 CATTA
1 AATTA
85257871 CAGTGAACCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.42
Consensus pattern (16 bp):
AATTATAGCTCTATTC
Found at i:85261452 original size:19 final size:19
Alignment explanation
Indices: 85261416--85261453 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
85261406 TCATCCTCCA
*
85261416 TTAAATAAATAAATAAAAT
1 TTAAATAAATAAAAAAAAT
85261435 TTAAA-AAATATAAAAAAAT
1 TTAAATAAATA-AAAAAAAT
85261454 ATTTTTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
TTAAATAAATAAAAAAAAT
Found at i:85261899 original size:21 final size:22
Alignment explanation
Indices: 85261873--85261913 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
85261863 AAAATAAGTT
*
85261873 TTATTTTAT-AATTTTTTAATA
1 TTATTTGATAAATTTTTTAATA
85261894 TTATTTGATAAATTTTTTAA
1 TTATTTGATAAATTTTTTAA
85261914 GGTTTTCTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TTATTTGATAAATTTTTTAATA
Found at i:85262021 original size:27 final size:26
Alignment explanation
Indices: 85261955--85262047 Score: 82
Period size: 27 Copynumber: 3.5 Consensus size: 26
85261945 ATTTTTCAAA
*
85261955 AAAATTTAAATTATTTTACTATT-T-T
1 AAAATTAAAATTATTTTA-TATTATAT
*
85261980 AAATATAAAATATTATCTTTATATTATAT
1 AAA-ATTAAA-ATTAT-TTTATATTATAT
* *
85262009 AAAATTAAAATTAATTATATATTAAAT
1 AAAATTAAAATT-ATTTTATATTATAT
*
85262036 AAAAATAAAATT
1 AAAATTAAAATT
85262048 CAGTTCAATT
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
25 3 0.05
26 4 0.07
27 33 0.59
28 12 0.21
29 4 0.07
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (26 bp):
AAAATTAAAATTATTTTATATTATAT
Found at i:85274523 original size:12 final size:12
Alignment explanation
Indices: 85274506--85274530 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85274496 AGGGAAGGTT
85274506 AGATATTTATAA
1 AGATATTTATAA
85274518 AGATATTTATAA
1 AGATATTTATAA
85274530 A
1 A
85274531 AGGGCTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (12 bp):
AGATATTTATAA
Found at i:85277585 original size:25 final size:23
Alignment explanation
Indices: 85277541--85277586 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
85277531 TATTAAAATG
*
85277541 AAAAAAAAAATTAAATTGTAAGT
1 AAAAAAAAAATTAAAATGTAAGT
*
85277564 AAAATAAAAATTTAAACATGTAA
1 AAAA-AAAAAATTAAA-ATGTAA
85277587 ATACATCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 10 0.53
25 5 0.26
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (23 bp):
AAAAAAAAAATTAAAATGTAAGT
Found at i:85280970 original size:31 final size:30
Alignment explanation
Indices: 85280933--85281002 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 30
85280923 TGGGTCCAAT
85280933 TTGGTACTCAAACTTGACACTTTTTCTTAA
1 TTGGTACTCAAACTTGACACTTTTTCTTAA
*
85280963 TTGGGTACTCAAACTTGACATTTTTTCTTAA
1 TT-GGTACTCAAACTTGACACTTTTTCTTAA
85280994 GTTGGTACT
1 -TTGGTACT
85281003 TAATCTTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
30 2 0.05
31 33 0.89
32 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.44
Consensus pattern (30 bp):
TTGGTACTCAAACTTGACACTTTTTCTTAA
Found at i:85281265 original size:32 final size:32
Alignment explanation
Indices: 85281210--85281279 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
85281200 TTAATATAAC
* * * *
85281210 ATTTGGTACCTGAATTTGACACTTTTTTCTTA
1 ATTTGGAACCTAAACTTGACACTTTTTTCCTA
*
85281242 ATTTGGAACCTAAACTTGGCACTTTTTTCCTA
1 ATTTGGAACCTAAACTTGACACTTTTTTCCTA
85281274 ATTTGG
1 ATTTGG
85281280 TAGCTAAGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (32 bp):
ATTTGGAACCTAAACTTGACACTTTTTTCCTA
Found at i:85281699 original size:29 final size:30
Alignment explanation
Indices: 85281653--85281748 Score: 81
Period size: 29 Copynumber: 3.2 Consensus size: 30
85281643 GCAAGGTCAA
* *
85281653 GTACCAAA-TCGAATAAAAAAAAAGATTAG
1 GTACCAAATTAGAACAAAAAAAAAGATTAG
** *
85281682 GTACCAAATTAGAA-AAAAGAGTCAAGTTTAG
1 GTACCAAATTAGAACAAAA-A-AAAAGATTAG
* * *
85281713 GTACCAAATTA-AACATAAAAAATGATTAA
1 GTACCAAATTAGAACAAAAAAAAAGATTAG
85281742 GTACCAA
1 GTACCAA
85281749 CTTAAAGAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
29 24 0.45
30 8 0.15
31 21 0.40
ACGTcount: A:0.54, C:0.11, G:0.14, T:0.21
Consensus pattern (30 bp):
GTACCAAATTAGAACAAAAAAAAAGATTAG
Found at i:85281718 original size:60 final size:61
Alignment explanation
Indices: 85281652--85281782 Score: 149
Period size: 60 Copynumber: 2.2 Consensus size: 61
85281642 GGCAAGGTCA
* * * *
85281652 AGTACCAAATCGAATAAAAAAAAAGATTAGGTACCAAATTAGA-AAAAAGAGTCAAGTTT-
1 AGTACCAAATCAAACAAAAAAAAAGATTAAGTACCAAATTAAAGAAAAAGAGTCAAGTTTG
* * * * **
85281711 AGGTACCAAATTAAACATAAAAAATGATTAAGTACCAACTTAAAGAAAAATTGTCAAGTTTG
1 A-GTACCAAATCAAACAAAAAAAAAGATTAAGTACCAAATTAAAGAAAAAGAGTCAAGTTTG
85281773 AGTACCAAAT
1 AGTACCAAAT
85281783 TGTGTCATTC
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
59 1 0.02
60 34 0.58
61 23 0.39
62 1 0.02
ACGTcount: A:0.52, C:0.11, G:0.14, T:0.23
Consensus pattern (61 bp):
AGTACCAAATCAAACAAAAAAAAAGATTAAGTACCAAATTAAAGAAAAAGAGTCAAGTTTG
Found at i:85281771 original size:61 final size:60
Alignment explanation
Indices: 85281669--85281783 Score: 151
Period size: 61 Copynumber: 1.9 Consensus size: 60
85281659 AATCGAATAA
* *
85281669 AAAAAAAGATTAGGTACCAAATTAGAAAAAAGAGTCAAGTTT-AGGTACCAAATTAAACAT
1 AAAAAAAGATTAAGTACCAAATTAAAAAAAAGAGTCAAGTTTGA-GTACCAAATTAAACAT
* * **
85281729 AAAAAATGATTAAGTACCAACTTAAAGAAAAATTGTCAAGTTTGAGTACCAAATT
1 AAAAAAAGATTAAGTACCAAATTAAA-AAAAAGAGTCAAGTTTGAGTACCAAATT
85281784 GTGTCATTCC
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 22 0.47
61 24 0.51
62 1 0.02
ACGTcount: A:0.51, C:0.10, G:0.14, T:0.24
Consensus pattern (60 bp):
AAAAAAAGATTAAGTACCAAATTAAAAAAAAGAGTCAAGTTTGAGTACCAAATTAAACAT
Found at i:85284320 original size:25 final size:25
Alignment explanation
Indices: 85284291--85284341 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
85284281 GTTACCATGA
85284291 TCCTCCTGCTGGTGTTACGGTAAAT
1 TCCTCCTGCTGGTGTTACGGTAAAT
85284316 TCCTCCTGCTGGTGTTACGGTAAAT
1 TCCTCCTGCTGGTGTTACGGTAAAT
85284341 T
1 T
85284342 TTGTCTTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.37
Consensus pattern (25 bp):
TCCTCCTGCTGGTGTTACGGTAAAT
Found at i:85287478 original size:17 final size:17
Alignment explanation
Indices: 85287451--85287505 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
85287441 TAACATGAAT
*
85287451 TTTTAATTAAAATAATAA
1 TTTT-ATTAAAAAAATAA
85287469 TTTTATTAAAAAAATAA
1 TTTTATTAAAAAAATAA
*
85287486 TATTA-TAAATAAAATAA
1 TTTTATTAAA-AAAATAA
85287503 TTT
1 TTT
85287506 AAGGGAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
16 4 0.12
17 25 0.76
18 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTTTATTAAAAAAATAA
Found at i:85289752 original size:16 final size:16
Alignment explanation
Indices: 85289731--85289799 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
85289721 TTTGGTTCGC
85289731 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
85289747 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
85289763 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
85289780 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
85289796 TGTA
1 TGTA
85289800 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:85289777 original size:33 final size:32
Alignment explanation
Indices: 85289731--85289799 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
85289721 TTTGGTTCGC
85289731 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
85289763 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
85289796 TGTA
1 TGTA
85289800 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:85290064 original size:18 final size:18
Alignment explanation
Indices: 85290019--85290069 Score: 56
Period size: 16 Copynumber: 3.0 Consensus size: 18
85290009 TCATATTTAA
85290019 ACATAATTATAATT-AAAT
1 ACATAATT-TAATTAAAAT
85290037 ACAT--TTTAATTAAAAT
1 ACATAATTTAATTAAAAT
*
85290053 ATATAATTTAA-TAAAAT
1 ACATAATTTAATTAAAAT
85290070 TCTTATAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 5 0.17
16 9 0.31
17 6 0.21
18 9 0.31
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (18 bp):
ACATAATTTAATTAAAAT
Found at i:85290188 original size:67 final size:67
Alignment explanation
Indices: 85290117--85290329 Score: 168
Period size: 67 Copynumber: 3.1 Consensus size: 67
85290107 ATTGTTAATG
*
85290117 TTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAAT
85290182 TA
66 TA
* * * * * * ***
85290184 TTATTAAATATATTTTAATTAAAATATATAATT-T-AATAA-AATTCTTATAAT--TAGCAGAAA
1 TTATT---TAAATTTTAA-TAAGAT-TATTATTATCAATAATAAATATTTTAATCATA-TTTAAA
** * *
85290244 TTTGTTATTG
60 --CATAATTA
* *
85290254 TTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAAT
85290319 TA
66 TA
85290321 TTA-TTAAAT
1 TTATTTAAAT
85290330 ACATTATAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 27
0.65 0.18 0.17
Matches are distributed among these distances:
65 5 0.05
66 12 0.12
67 28 0.27
68 11 0.11
69 12 0.12
70 24 0.23
71 6 0.06
72 6 0.06
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (67 bp):
TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAAT
TA
Found at i:85290206 original size:156 final size:156
Alignment explanation
Indices: 85289922--85290243 Score: 590
Period size: 156 Copynumber: 2.1 Consensus size: 156
85289912 TAGAATACCC
* * *
85289922 TTAGCATAAAACTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAACTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
85289987 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATACATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATACATTTTAATTAAAA
85290052 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
*
85290078 TTAGCAGAAAATTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAACTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
* *
85290143 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATACATTTTAATTAAAA
85290208 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
85290234 TTAGCAGAAA
1 TTAGCAGAAA
85290244 TTTGTTATTG
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
156 160 1.00
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (156 bp):
TTAGCAGAAAACTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATACATTTTAATTAAAA
TATATAATTTAATAAAATTCTTATAA
Found at i:85290212 original size:18 final size:17
Alignment explanation
Indices: 85290191--85290225 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
85290181 TTATTATTAA
*
85290191 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
85290209 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
85290226 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:85290250 original size:137 final size:138
Alignment explanation
Indices: 85290108--85290373 Score: 435
Period size: 137 Copynumber: 1.9 Consensus size: 138
85290098 TAAATGATTA
* * *
85290108 TTGTTAATGTTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
* *
85290173 AAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTT-ATAATTA
66 AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
85290237 GCAGAAAT
131 GCAGAAAT
*
85290245 TTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
****
85290310 AAACATAATTATTATTAAATACATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT
66 AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
85290374 CATATTCTTA
Statistics
Matches: 118, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
137 112 0.95
138 6 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (138 bp):
TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
GCAGAAAT
Found at i:85290407 original size:137 final size:135
Alignment explanation
Indices: 85290129--85290407 Score: 330
Period size: 137 Copynumber: 2.0 Consensus size: 135
85290119 ATTTAAATTT
* * *
85290129 TAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATA
1 TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
* * * *
85290194 TATTTTAATTAAAATATATAATTTAATAAAATTCTTATAATTAGCAGAAATTTGTTATTGTTATT
66 CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTA-CA-AAATTTCTTATTGTTACT
* ***
85290259 TAAATTT
129 CAAAGCA
85290266 TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
1 TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
**** *
85290331 CATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT-C-ATA-TTCTTATATGAATTT
66 CATTATAATTAAAATATATAATTTAATAAAATTCTT-ATAATTACAAAATTTCTTAT-TG---TT
85290393 ACTCAAAGCA
126 ACTCAAAGCA
85290403 TAATA
1 TAATA
85290408 TATGATACTA
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
133 6 0.05
134 4 0.03
136 1 0.01
137 104 0.86
138 6 0.05
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (135 bp):
TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTACAAAATTTCTTATTGTTACTCA
AAGCA
Found at i:85293853 original size:8 final size:9
Alignment explanation
Indices: 85293833--85293867 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
85293823 ATATTACAAC
85293833 AAAAATTTA
1 AAAAATTTA
85293842 AAAAATTTA
1 AAAAATTTA
85293851 AAAAATTT-
1 AAAAATTTA
85293859 AAAAATTTA
1 AAAAATTTA
85293868 GAAGAGTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.32
9 17 0.68
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
AAAAATTTA
Found at i:85293856 original size:18 final size:17
Alignment explanation
Indices: 85293833--85293867 Score: 61
Period size: 17 Copynumber: 2.0 Consensus size: 17
85293823 ATATTACAAC
85293833 AAAAATTTAAAAAATTTA
1 AAAAATTT-AAAAATTTA
85293851 AAAAATTTAAAAATTTA
1 AAAAATTTAAAAATTTA
85293868 GAAGAGTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAAATTTAAAAATTTA
Found at i:85299231 original size:131 final size:132
Alignment explanation
Indices: 85298989--85299240 Score: 335
Period size: 131 Copynumber: 1.9 Consensus size: 132
85298979 ATTATTCATT
* ** *** *
85298989 TAAAAATTCTTTAAAACGAAGGTGGTGTTCGATATTTGGCAATTCGCGGGATCGTGCCCTAACGT
1 TAAAAATTCTTTAAAACGAAAGTAATACACGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
* *
85299054 GCTGGGTTGCAATTTCTCGTTTACTCAAAATAATCGAATGTCCCTTTAGAATTTCATTCATGTTT
66 GCTGGGTTGCAATTTCTCGTTTACTCAAAACAATCGAATATCCCTTTAGAATTTCATTCATGTTT
85299119 TC
131 TC
* * *
85299121 TAAAAATTCTTTAAAACGAAAGTAATACACGATGTTTGGCAATTCG-GGAATTGTGCCCTATCGT
1 TAAAAATTCTTTAAAACGAAAGTAATACACGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
** ** * *
85299185 GCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTGGAATTTCA
66 GCTGGGTTGCAATTTCTCGTTTACTCAAAACAATCGAATATCCCTTTAGAATTTCA
85299241 CCCTCGTCTT
Statistics
Matches: 102, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
131 63 0.62
132 39 0.38
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.36
Consensus pattern (132 bp):
TAAAAATTCTTTAAAACGAAAGTAATACACGATATTTGGCAATTCGCGGAATCGTGCCCTAACGT
GCTGGGTTGCAATTTCTCGTTTACTCAAAACAATCGAATATCCCTTTAGAATTTCATTCATGTTT
TC
Found at i:85300566 original size:18 final size:18
Alignment explanation
Indices: 85300543--85300581 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
85300533 AAGAAAAATG
* *
85300543 TAAAAAATATAATATTTA
1 TAAAAAATAAAAAATTTA
*
85300561 TAAAAATTAAAAAATTTA
1 TAAAAAATAAAAAATTTA
85300579 TAA
1 TAA
85300582 TTATTTCCGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
TAAAAAATAAAAAATTTA
Found at i:85301256 original size:6 final size:6
Alignment explanation
Indices: 85301245--85301272 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
85301235 GCAAAAAAGG
85301245 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
85301273 CGTGTAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:85304871 original size:10 final size:9
Alignment explanation
Indices: 85304852--85304880 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
85304842 ATCTCAATCC
85304852 TTTA-TTTT
1 TTTATTTTT
85304860 TTTATTTTT
1 TTTATTTTT
85304869 TTTATTTTT
1 TTTATTTTT
85304878 TTT
1 TTT
85304881 CCTCTCTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.20
9 16 0.80
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTATTTTT
Found at i:85316868 original size:15 final size:14
Alignment explanation
Indices: 85316835--85316870 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
85316825 TAATTTCTAT
85316835 ATATATATTCTAAA
1 ATATATATTCTAAA
85316849 A-ATATATTCATAAA
1 ATATATATTC-TAAA
85316863 ATATATAT
1 ATATATAT
85316871 AGTACTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 8 0.40
14 6 0.30
15 6 0.30
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATATATTCTAAA
Found at i:85319281 original size:41 final size:42
Alignment explanation
Indices: 85319214--85319294 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 42
85319204 AATTATGTTA
* *
85319214 ATATGTTTTGATCACTCAAAAATGATTCAATGATTAGTAAGT
1 ATATATTTTGATCACTCAAAAATGATTCAATGATCAGTAAGT
**
85319256 ATATATTTTGATCA-TTTAAAATGATTCAATGATCAGTAA
1 ATATATTTTGATCACTCAAAAATGATTCAATGATCAGTAA
85319295 AATAAATTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
41 22 0.63
42 13 0.37
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.40
Consensus pattern (42 bp):
ATATATTTTGATCACTCAAAAATGATTCAATGATCAGTAAGT
Found at i:85319520 original size:34 final size:33
Alignment explanation
Indices: 85319478--85319547 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 33
85319468 GAATGGCATG
85319478 AAAAACCCATATAATAACCTAATGACTAAATGTA
1 AAAAACCCATATAATAACCTAATGACTAAATG-A
*
85319512 AAAAACCCATGTAATAACCTAATGACTAAATGA
1 AAAAACCCATATAATAACCTAATGACTAAATGA
85319545 AAA
1 AAA
85319548 CTTGATTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
33 4 0.11
34 31 0.89
ACGTcount: A:0.54, C:0.17, G:0.07, T:0.21
Consensus pattern (33 bp):
AAAAACCCATATAATAACCTAATGACTAAATGA
Found at i:85322108 original size:19 final size:19
Alignment explanation
Indices: 85322084--85322122 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
85322074 AGCGAATCCT
85322084 AACAACAGCCTGAACATGA
1 AACAACAGCCTGAACATGA
85322103 AACAACAGCCTGAACATGA
1 AACAACAGCCTGAACATGA
85322122 A
1 A
85322123 CATATAAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.26, G:0.15, T:0.10
Consensus pattern (19 bp):
AACAACAGCCTGAACATGA
Found at i:85324468 original size:28 final size:27
Alignment explanation
Indices: 85324424--85324500 Score: 77
Period size: 28 Copynumber: 2.7 Consensus size: 27
85324414 AATTTATATT
*
85324424 TTATATTAAATTATTTAAATATAATTTA
1 TTATATTTAATT-TTTAAATATAATTTA
*
85324452 TTATATTTAAGTTTTTAAA-ATATTTTA
1 TTATATTTAA-TTTTTAAATATAATTTA
85324479 TGTAT-TATTAATTTTATAAATA
1 T-TATAT-TTAATTTT-TAAATA
85324501 ATTTATATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
27 13 0.31
28 26 0.62
29 3 0.07
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (27 bp):
TTATATTTAATTTTTAAATATAATTTA
Found at i:85324487 original size:29 final size:26
Alignment explanation
Indices: 85324437--85324516 Score: 65
Period size: 28 Copynumber: 2.8 Consensus size: 26
85324427 TATTAAATTA
*
85324437 TTTAAATATAATTTATTA-TATTTAAGTT
1 TTTAAA-ATATTTTATTATTATTTAA--T
85324465 TTTAAAATATTTTATGTATTA-TTAAT
1 TTTAAAATATTTTAT-TATTATTTAAT
85324491 TTTATAAATAATTTATATTTATTATT
1 TTTA-AAAT-ATTT-TA-TTATTATT
85324517 CAAAGTATAT
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
26 5 0.11
27 12 0.27
28 16 0.36
29 9 0.20
30 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.59
Consensus pattern (26 bp):
TTTAAAATATTTTATTATTATTTAAT
Found at i:85324493 original size:26 final size:29
Alignment explanation
Indices: 85324464--85324516 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
85324454 ATATTTAAGT
85324464 TTTTA-AAAT-ATTT-TATGTATTATTAA
1 TTTTATAAATAATTTATATGTATTATTAA
*
85324490 TTTTATAAATAATTTATATTTATTATT
1 TTTTATAAATAATTTATATGTATTATT
85324517 CAAAGTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.22
27 4 0.17
28 4 0.17
29 10 0.43
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (29 bp):
TTTTATAAATAATTTATATGTATTATTAA
Found at i:85329807 original size:2 final size:2
Alignment explanation
Indices: 85329746--85329789 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
85329736 GTGTGTGTGT
85329746 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
85329788 GA
1 GA
85329790 TGACAATGGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:85335101 original size:59 final size:56
Alignment explanation
Indices: 85335036--85335221 Score: 144
Period size: 59 Copynumber: 3.1 Consensus size: 56
85335026 ATGATAAATT
*
85335036 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTTATTAA--TATATTTAATAATAATTAT-TTAAATTATATTTTATAGTATC
* * * * * *
85335095 ATATATTATGATT-TTAAAAAATTCATATAAGAA-TATTTAATATTAAGAATTTTATTA-AATC
1 ATATATT-T--TTATTAATATATTTA-ATAATAATTATTTAA-ATT-A-TATTTTA-TAGTATC
* *
85335156 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTTATT--AATATATTTAATAATAATTATTT-AAATTATATTTTATAGTATC
85335215 ATATATT
1 ATATATT
85335222 ATGATTTGAG
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
58 7 0.07
59 36 0.37
60 15 0.15
61 34 0.35
62 6 0.06
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (56 bp):
ATATATTTTTATTAATATATTTAATAATAATTATTTAAATTATATTTTATAGTATC
Found at i:85335147 original size:61 final size:61
Alignment explanation
Indices: 85335082--85335269 Score: 165
Period size: 61 Copynumber: 3.1 Consensus size: 61
85335072 GTTAAATTAT
*
85335082 ATTTTATAGTATTATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGA
1 ATTTTATAGTATCATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGA
* * * * * *
85335143 ATTTTATTA-AATCATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTCAA-ATT-A-
1 ATTTTA-TAGTATCATATATTATGATTTTAAAA-A-A-TTCATATAAGAATATTT-AATATTAAG
*
85335201 T
61 A
* ** * *
85335202 ATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGA
1 ATTTTATAGTATCATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGA
85335263 ATTTTAT
1 ATTTTAT
85335270 TATAAATTAT
Statistics
Matches: 95, Mismatches: 20, Indels: 24
0.68 0.14 0.17
Matches are distributed among these distances:
58 10 0.11
59 31 0.33
60 8 0.08
61 35 0.37
62 11 0.12
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (61 bp):
ATTTTATAGTATCATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGA
Found at i:85335243 original size:120 final size:122
Alignment explanation
Indices: 85335029--85335319 Score: 453
Period size: 120 Copynumber: 2.4 Consensus size: 122
85335019 TAGTATGATG
* **
85335029 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
85335094 TATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAAAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
85335150 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
** *
85335213 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAAAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
85335271 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
85335320 ATATGATTAA
Statistics
Matches: 153, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
119 2 0.01
120 105 0.69
121 1 0.01
122 43 0.28
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAAAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:85335298 original size:18 final size:19
Alignment explanation
Indices: 85335263--85335299 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
85335253 ATTATTAAGA
85335263 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
85335282 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
85335300 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:85335529 original size:44 final size:45
Alignment explanation
Indices: 85335464--85335554 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
85335454 ACCTCTATTC
* * *
85335464 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
85335508 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
85335553 CA
1 CA
85335555 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:85335569 original size:17 final size:16
Alignment explanation
Indices: 85335535--85335587 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
85335525 GATTAGCTAT
85335535 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
85335551 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
85335568 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
85335584 TACA
1 TACA
85335588 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:85338781 original size:3 final size:3
Alignment explanation
Indices: 85338775--85338809 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
85338765 ATTTGCAGCC
85338775 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
85338810 AGACATCTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:85339330 original size:3 final size:3
Alignment explanation
Indices: 85339322--85339379 Score: 57
Period size: 3 Copynumber: 19.7 Consensus size: 3
85339312 CTGCCAAATG
* * *
85339322 TAT TAT TAT TAT TAT T-T T-T TGAC AAT TAT TAT TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
*
85339366 CAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA
85339380 AGAAGAGGGT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
2 4 0.09
3 41 0.91
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:85343201 original size:43 final size:43
Alignment explanation
Indices: 85343153--85343239 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
85343143 TCTCAAATCT
*
85343153 TTCATCTCAAATTCTTCACTTAGTTGGGCTTTAATCTTTTTTA
1 TTCATCTCAAATTCTTCACTTAGTTGGGCTTTAACCTTTTTTA
*
85343196 TTCATCTCAAATTCTTCACTTAGTTGGGCTTTGACCTTTTTTA
1 TTCATCTCAAATTCTTCACTTAGTTGGGCTTTAACCTTTTTTA
85343239 T
1 T
85343240 CTCTCCTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.51
Consensus pattern (43 bp):
TTCATCTCAAATTCTTCACTTAGTTGGGCTTTAACCTTTTTTA
Found at i:85344032 original size:26 final size:26
Alignment explanation
Indices: 85343996--85344105 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
85343986 TGACACAAAT
85343996 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
85344022 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
85344048 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
85344074 TGATAGTGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
85344100 TGATAA
1 TGATAA
85344106 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:85345826 original size:27 final size:27
Alignment explanation
Indices: 85345724--85345831 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 27
85345714 GAGGAAGCGT
* *
85345724 TCTGGTGGCTATGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-ATTATCTGTA
*
85345751 TCTAGTGGCTCTGCCACATATATCTGT-
1 TCTGGTGGCTCTGCCACAT-TATCTGTA
85345778 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCAC-ATTATCTGTA
* * *
85345806 TCTGGTGACTCTGTCATATTATCTGT
1 TCTGGTGGCTCTGCCACATTATCTGT
85345832 TCTAGTAGCC
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
26 1 0.01
27 53 0.76
28 16 0.23
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACATTATCTGTA
Found at i:85345829 original size:54 final size:54
Alignment explanation
Indices: 85345722--85345834 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
85345712 TGGAGGAAGC
*
85345722 GTTCTGGTGGCTATGCCACAAATATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTAGTGACTCTGCCACATATATCT
* * * * * *
85345776 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCATAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTAGTGACTCTGCCACATATATCT
85345830 GTTCT
1 GTTCT
85345835 AGTAGCCATG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 35 0.69
55 16 0.31
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTAGTGACTCTGCCACATATATCT
Found at i:85345921 original size:19 final size:22
Alignment explanation
Indices: 85345897--85345936 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
85345887 CTCCCCACAC
85345897 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
85345916 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
85345937 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:85352735 original size:4 final size:4
Alignment explanation
Indices: 85352722--85352847 Score: 234
Period size: 4 Copynumber: 31.2 Consensus size: 4
85352712 AATCAATTAA
*
85352722 ACAT ATAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
85352770 ACAAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 AC-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
85352819 ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
85352848 TTTTTCATAT
Statistics
Matches: 119, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
4 115 0.97
5 4 0.03
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:85357340 original size:19 final size:18
Alignment explanation
Indices: 85357317--85357367 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
85357307 TTTTTTTAGA
85357317 TAATTACATTTATTTTTT
1 TAATTACATTTATTTTTT
* *
85357335 TAAATTAGGATTTAATTTTT
1 T-AATTA-CATTTATTTTTT
*
85357355 TAATTTCATTTAT
1 TAATTACATTTAT
85357368 GATTTATTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
18 6 0.23
19 9 0.35
20 11 0.42
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (18 bp):
TAATTACATTTATTTTTT
Found at i:85374419 original size:14 final size:14
Alignment explanation
Indices: 85374400--85374426 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
85374390 TAATTAATAA
85374400 TTAAAATGAAAGTG
1 TTAAAATGAAAGTG
85374414 TTAAAATGAAAGT
1 TTAAAATGAAAGT
85374427 CAGGATGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.30
Consensus pattern (14 bp):
TTAAAATGAAAGTG
Found at i:85375367 original size:98 final size:99
Alignment explanation
Indices: 85375184--85375380 Score: 247
Period size: 98 Copynumber: 2.0 Consensus size: 99
85375174 GTATTATTGA
* *
85375184 TTAACTCCGATTGCGTCATTGCTTTAGTTCAGTTCAGAAAACGTGAAAATTAAGGTTACTTTAAG
1 TTAACTCCGATTGCGTCACTGCTTTAGTTCAGTTCAGAAAACGTGAAAATTAAGGTTACTTTAAC
*
85375249 ATTGGAGTATTGATTAATTACTTTATAATTCAAT
66 ATCGGAGTATTGATTAATTACTTTATAATTCAAT
* * * * * * * *
85375283 TTAATTCCGATTGCGTCACTGTTTTGGTTCAGTT-AGAAAATGTGAGAGTT-TGGATTTCTTTAA
1 TTAACTCCGATTGCGTCACTGCTTTAGTTCAGTTCAGAAAACGTGAAAATTAAGG-TTACTTTAA
*
85375346 CATCGGA-TCATTTATTAATTACTTTATAATTCAAT
65 CATCGGAGT-ATTGATTAATTACTTTATAATTCAAT
85375381 AGGTATTTGA
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
97 3 0.04
98 51 0.61
99 30 0.36
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (99 bp):
TTAACTCCGATTGCGTCACTGCTTTAGTTCAGTTCAGAAAACGTGAAAATTAAGGTTACTTTAAC
ATCGGAGTATTGATTAATTACTTTATAATTCAAT
Found at i:85408010 original size:51 final size:51
Alignment explanation
Indices: 85407934--85408048 Score: 221
Period size: 51 Copynumber: 2.3 Consensus size: 51
85407924 CGGATCTCAT
*
85407934 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAGGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAATGTAGCTGAGGCTACCAC
85407985 TTATCACTTGTCACTTGTCACTGATCAGATAAATGTAGCTGAGGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAATGTAGCTGAGGCTACCAC
85408036 TTATCACTTGTCA
1 TTATCACTTGTCA
85408049 TTGATCAGAA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAATGTAGCTGAGGCTACCAC
Found at i:85410638 original size:16 final size:17
Alignment explanation
Indices: 85410607--85410639 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
85410597 TTCATAAGTA
85410607 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
85410624 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
85410640 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:85410985 original size:46 final size:46
Alignment explanation
Indices: 85410920--85411289 Score: 501
Period size: 46 Copynumber: 8.0 Consensus size: 46
85410910 TTATCTTTGA
* * * * * *
85410920 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
**
85410966 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * ** ***
85411012 CACGTTGCCGTGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* **
85411058 CATGTTGCAATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
85411104 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
85411150 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
85411196 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
85411242 CA-GATTGCCATAGTATCTTTCAAACATGGTCTTACACATTTCATAT
1 CATG-TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
85411288 CA
1 CA
85411290 GAGAGCACAC
Statistics
Matches: 298, Mismatches: 24, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
45 5 0.02
46 293 0.98
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:85433710 original size:43 final size:43
Alignment explanation
Indices: 85433662--85433818 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
85433652 GCCTGAATTC
*
85433662 GTGTAAGACCATGTCCGGGACATTGGCATTGATATGAGATTAT
1 GTGTAAGACCATGTCTGGGACATTGGCATTGATATGAGATTAT
* *
85433705 GTGTAAGACCATGTCTGGGACATTAGCATCG-TAT-ATGATT-T
1 GTGTAAGACCATGTCTGGGACATTGGCATTGATATGA-GATTAT
* ** * * *
85433746 GTGTAAGACCCTGTCTGGGACAGAGGCATTGATATGTGATAAC
1 GTGTAAGACCATGTCTGGGACATTGGCATTGATATGAGATTAT
* * *
85433789 ATGTAAGACCATATCTGGGATA-TGGCATTG
1 GTGTAAGACCATGTCTGGGACATTGGCATTG
85433819 TATTCGATAT
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
41 28 0.30
42 20 0.21
43 46 0.49
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATTGATATGAGATTAT
Found at i:85444057 original size:47 final size:46
Alignment explanation
Indices: 85443945--85444215 Score: 248
Period size: 47 Copynumber: 5.8 Consensus size: 46
85443935 AGTTGTTTCT
*** * *
85443945 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTTGA-GACGA
* * *
85443991 GAGCTAGTTTAAGACCATGTTTGGGACATGGCATCGGCATTGAAACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-TTGAGACGA
* *
85444039 GAGCTAGTGTATGA-CATGTCTGGGACATGCATCGAGCTCGAGACGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCG-GCTTGAGACG-A
* * * *
85444086 -AGCCAGTGTAAGA-CATGTCTGGGACATGTATCGGCTACGAGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCT-TGAGACGA
* * * *
85444131 TAG-TCAGTGTAAGACCGTGTCTGGGACATGGCATCGACTTGAGA-TA
1 GAGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGGCTTGAGACGA
85444177 TGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCGGC
1 -GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC
85444216 ACCTTACCCA
Statistics
Matches: 187, Mismatches: 26, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
45 4 0.02
46 73 0.39
47 78 0.42
48 31 0.17
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTTGAGACGA
Found at i:85444202 original size:140 final size:141
Alignment explanation
Indices: 85443950--85444213 Score: 358
Period size: 140 Copynumber: 1.9 Consensus size: 141
85443940 TTTCTGAGCT
* * *
85443950 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTTTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGTCTGG
* *
85444015 GACATGGCATCGGCATTGAAACGAGAGCTAGTGTATGACATGTCTGGGACAT-GCATCGAGCTCG
66 GACATGGCATCGACATTGAAACGAGAGCTAGTGTAAGACATGTCTGGGACATAGCATCGAGCTCG
85444079 AGACGTAAGCC
131 AGACGTAAGCC
* * * *
85444090 AGTGTAAGACATGTCTGGGACATGTATCGGCTACGA-GATGATAG-TCAGTGTAAGACCGTGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCT-AGTGTAAGACCATGTCT
* *
85444153 GGGACATGGCATCGAC-TTGAGA-TATGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCG
64 GGGACATGGCATCGACATTGAAACGA-GAGCTAGTGTAAGA-CATGTCTGGGACATAGCATCG
85444214 GCACCTTACC
Statistics
Matches: 108, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
138 1 0.01
139 19 0.18
140 81 0.75
141 7 0.06
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTGAAACGAGAGCTAGTGTAAGACATGTCTGGGACATAGCATCGAGCTCG
AGACGTAAGCC
Found at i:85451671 original size:47 final size:48
Alignment explanation
Indices: 85451610--85451865 Score: 172
Period size: 47 Copynumber: 5.4 Consensus size: 48
85451600 TAGTGTAATA
85451610 CATGTCTGGGACAT-GCATCGACCACATTATGAGAGCCAATGTAAGAC
1 CATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAATGTAAGAC
* ** * *
85451657 CATCTCTGGGACATGGCATC-A--GTATTGAGACGAGAGCTAATGTAAGA-
1 CATGTCTGGGACATGGCATCGACCACATT---ATGAGAGCCAATGTAAGAC
* * *
85451704 CATGTCTGGGACAT-GCATCGGCCTCGA-GATGTA-AGCCAATGTAAGAC
1 CATGTCTGGGACATGGCATCGACCAC-ATTATG-AGAGCCAATGTAAGAC
* * * * * *
85451751 CATGTCTGGGACATGGCATCGGCTACGA-GATGATAGTCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCGACCAC-ATTATGAGAGCCAATGTAAGAC
* * *** * * * *
85451799 CGTGTCTGGGACATGGCTTCGACTTGA-GATGTGAGCCAGTGTAAGGC
1 CATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAATGTAAGAC
*
85451846 CGTGTCTGGGACATGGCATC
1 CATGTCTGGGACATGGCATC
85451866 AGCACCTTAC
Statistics
Matches: 171, Mismatches: 26, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
45 3 0.02
46 19 0.11
47 79 0.46
48 69 0.40
50 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (48 bp):
CATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAATGTAAGAC
Found at i:85451693 original size:48 final size:48
Alignment explanation
Indices: 85451638--85451867 Score: 229
Period size: 47 Copynumber: 4.9 Consensus size: 48
85451628 CGACCACATT
* *
85451638 ATGAGAGCCAATGTAAGACCATCTCTGGGACATGGCATCAGTATTGAG
1 ATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCAGTATCGAG
* * * **
85451686 ACGAGAGCTAATGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAG
1 ATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCAGTATCGAG
*
85451732 ATGTA-AGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCTA-CGAG
1 ATG-AGAGCCAATGTAAGACCATGTCTGGGACATGGCATCAG-TATCGAG
* * * * * *
85451780 ATGATAGTCAGTGTAAGACCGTGTCTGGGACATGGCTTC-G-ACTTGAG
1 ATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCAGTA-TCGAG
* * * *
85451827 ATGTGAGCCAGTGTAAGGCCGTGTCTGGGACATGGCATCAG
1 ATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCAG
85451868 CACCTTACCC
Statistics
Matches: 153, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 24 0.16
47 67 0.44
48 61 0.40
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (48 bp):
ATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCAGTATCGAG
Found at i:85451759 original size:94 final size:94
Alignment explanation
Indices: 85451596--85451868 Score: 295
Period size: 94 Copynumber: 2.9 Consensus size: 94
85451586 ATTTGTTTGT
* * * *
85451596 GAGCTAGTGTAATACATGTCTGGGACATGCATCGACCAC-ATTATG-AGAGCCAATGTAAGACCA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTA-AGCCAATGTAAGACCA
* *
85451659 TCTCTGGGACATGGCATCAG-TATTGAGACGA
64 TGTCTGGGACATGGCATCAGCTA-CGAGACGA
*
85451690 GAGCTAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAATGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAATGTAAGACCATG
* *
85451755 TCTGGGACATGGCATCGGCTACGAGATGA
66 TCTGGGACATGGCATCAGCTACGAGACGA
* * * * * * * *
85451784 TAG-TCAGTGTAAGACCGTGTCTGGGACATGGCTTC-GACTTGAGATGTGAGCCAGTGTAAGGCC
1 GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCCAATGTAAGACC
*
85451847 GTGTCTGGGACATGGCATCAGC
63 ATGTCTGGGACATGGCATCAGC
85451869 ACCTTACCCA
Statistics
Matches: 153, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
93 1 0.01
94 88 0.58
95 60 0.39
96 4 0.03
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAATGTAAGACCATG
TCTGGGACATGGCATCAGCTACGAGACGA
Found at i:85469463 original size:47 final size:47
Alignment explanation
Indices: 85469378--85469493 Score: 121
Period size: 47 Copynumber: 2.5 Consensus size: 47
85469368 GACGTAAGCA
* * * *
85469378 AGTGTAAGA-TATGTCTAGGACATGCGTTGGCTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGCGTTGACTACGAGAT-ATCAGCC
* *
85469424 AGTGTAAGACCATGTCTGGGACATGGCTTTGACT-TGAGATATCAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCGTTGACTACGAGATATCAGCC
* *
85469471 GGTGTAAGACCGTGTCTGGGACA
1 AGTGTAAGACCATGTCTGGGACA
85469494 CGGCATCGAC
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
46 11 0.19
47 41 0.69
48 7 0.12
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCGTTGACTACGAGATATCAGCC
Found at i:85473382 original size:27 final size:27
Alignment explanation
Indices: 85473352--85473407 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
85473342 AAATCAAGTC
*
85473352 ATTTTAGTAA-CAATTTATGTTTTTACA
1 ATTTCAGTAATCAATTTATGTTTTT-CA
*
85473379 ATTTCAGTAATTAATTTATGTTTTTCA
1 ATTTCAGTAATCAATTTATGTTTTTCA
85473406 AT
1 AT
85473408 AGTTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (27 bp):
ATTTCAGTAATCAATTTATGTTTTTCA
Found at i:85498949 original size:27 final size:26
Alignment explanation
Indices: 85498919--85498975 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
85498909 AAAATTTTAA
*
85498919 ATTAATAATAATAAAATAATTTAATTT-
1 ATTAAAAATAAT-AAA-AATTTAATTTG
85498946 ATTAAAAATAATAAAAATTTAATTTG
1 ATTAAAAATAATAAAAATTTAATTTG
85498972 ATTA
1 ATTA
85498976 TTTAAAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 10 0.36
26 7 0.25
27 11 0.39
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (26 bp):
ATTAAAAATAATAAAAATTTAATTTG
Done.